Query 012956
Match_columns 452
No_of_seqs 249 out of 1864
Neff 10.2
Searched_HMMs 13730
Date Mon Mar 25 19:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012956.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012956hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 19.1 2.4E+02 0.017 23.3 13.0 15 279-293 73-87 (447)
2 d1nkzb_ f.3.1.1 (B:) Light-har 8.8 1.6E+02 0.011 15.6 4.7 34 296-329 7-40 (41)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 7.3 5.4E+02 0.039 20.7 28.9 24 400-423 406-429 (447)
4 d1q7ha2 d.17.6.2 (A:3-68) Hypo 4.4 3.4E+02 0.025 15.7 2.8 22 431-452 7-28 (66)
5 d1ijdb_ f.3.1.1 (B:) Light-har 4.3 3E+02 0.022 14.4 4.7 32 296-327 8-39 (40)
6 d1vpua_ g.34.1.1 (A:) HIV-1 VP 3.9 1.2E+02 0.0085 16.7 0.4 21 430-450 3-23 (45)
7 d1lghb_ f.3.1.1 (B:) Light-har 3.6 3.8E+02 0.028 14.4 4.6 32 297-328 11-42 (43)
8 d2r6gg1 f.58.1.1 (G:7-296) Mal 3.6 8.5E+02 0.062 18.5 8.4 35 286-320 183-217 (290)
9 d2iuba2 f.17.3.1 (A:286-349) M 3.3 2.7E+02 0.02 16.1 1.8 8 387-394 15-22 (64)
10 d1k85a_ b.1.2.1 (A:) Fibronect 2.9 1.9E+02 0.014 17.8 0.7 10 1-10 2-11 (88)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=19.13 E-value=2.4e+02 Score=23.31 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhc
Q 012956 279 GMNAAVSVRTSNELG 293 (452)
Q Consensus 279 ~l~~a~~~~~~~~~g 293 (452)
+++.-..-.+++.+|
T Consensus 73 ~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 73 GFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcC
Confidence 344444445555554
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=8.80 E-value=1.6e+02 Score=15.64 Aligned_cols=34 Identities=3% Similarity=-0.030 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 012956 296 HPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQY 329 (452)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 329 (452)
+-++..+....+.+.-..++++.-++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3477888888888888888888877777776664
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.31 E-value=5.4e+02 Score=20.71 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=13.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHH
Q 012956 400 GLEVKGIWCGMLCGTILQTCVIFG 423 (452)
Q Consensus 400 ~~g~~g~~~a~~~~~~~~~~~~~~ 423 (452)
..|..+..+.......+..++...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHH
Confidence 467666666555555555444333
No 4
>d1q7ha2 d.17.6.2 (A:3-68) Hypothetical protein Ta1423, N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=4.43 E-value=3.4e+02 Score=15.69 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhcCCCCCCC
Q 012956 431 NKEAAVAGDRIRKWGGHTENET 452 (452)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~ 452 (452)
+++.+...++.++.+.|.++|+
T Consensus 7 Kke~K~i~~~m~~~GIDisges 28 (66)
T d1q7ha2 7 KKEAKRIWEQMSRYGIDITGES 28 (66)
T ss_dssp HHHHHHHHHHHHTTTCCCTTCC
T ss_pred HHHHHHHHHHHHHhCccccCcE
Confidence 4566667777777777777663
No 5
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.25 E-value=3e+02 Score=14.36 Aligned_cols=32 Identities=3% Similarity=0.020 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012956 296 HPRTAKLSLVVAVFSSFLIGLTLSLILIVTRN 327 (452)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (452)
+-++..+....+.+.-..++++.-++.+...+
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 34677788888888888777777666665544
No 6
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=3.88 E-value=1.2e+02 Score=16.65 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHhhhhcCCCCC
Q 012956 430 WNKEAAVAGDRIRKWGGHTEN 450 (452)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~ 450 (452)
..+.+++.++|.+..+.+++.
T Consensus 3 IdrLi~RIrERAEDSGNESeG 23 (45)
T d1vpua_ 3 IDRLIDRITERAEDSGNESEG 23 (45)
T ss_dssp HHHHHHHHHHTTCHHHHTTTT
T ss_pred HHHHHHHHHHHcccCCCCCcc
Confidence 345566677777666555543
No 7
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.59 E-value=3.8e+02 Score=14.42 Aligned_cols=32 Identities=3% Similarity=0.003 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 012956 297 PRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQ 328 (452)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (452)
-++..+.+..++..-..++++.=++.+...|+
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35566667777766666666666666665554
No 8
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=3.55 E-value=8.5e+02 Score=18.48 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=23.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 012956 286 VRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSL 320 (452)
Q Consensus 286 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (452)
-..++..|+++.+..++..-..++=+...+.....
T Consensus 183 ~EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~f 217 (290)
T d2r6gg1 183 EEAAALDGATPWQAFRLVLLPLSVPILAVVFILSF 217 (290)
T ss_dssp HHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 34567778888888888876666666655554443
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.28 E-value=2.7e+02 Score=16.13 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=3.4
Q ss_pred hhhHHHHH
Q 012956 387 FGIPLGLI 394 (452)
Q Consensus 387 ~~i~~~~~ 394 (452)
+.+|..++
T Consensus 15 iflP~t~i 22 (64)
T d2iuba2 15 IFMPLTFI 22 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 10
>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}
Probab=2.85 E-value=1.9e+02 Score=17.78 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=6.3
Q ss_pred CCCCcccccc
Q 012956 1 MVPSRSRHLY 10 (452)
Q Consensus 1 ~~~~~~~~~~ 10 (452)
.+|++|..+.
T Consensus 2 ~AP~~P~~l~ 11 (88)
T d1k85a_ 2 MAPTAPTNLA 11 (88)
T ss_dssp CSCCCCEEEE
T ss_pred cCcCCCCCcE
Confidence 3677777553
Done!