Query 012957
Match_columns 452
No_of_seqs 137 out of 221
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 19:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012957.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012957hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lkja_ a.39.1.5 (A:) Calmodul 58.0 22 0.0016 27.3 8.3 122 227-353 1-128 (146)
2 d1le8a_ a.4.1.1 (A:) Mating ty 39.2 15 0.0011 25.3 3.9 34 380-415 2-35 (53)
3 d1jgga_ a.4.1.1 (A:) Even-skip 37.0 9.5 0.00069 26.8 2.5 36 378-415 2-37 (57)
4 d1fx0a1 a.69.1.1 (A:373-501) F 32.3 38 0.0028 27.1 5.9 84 165-269 30-122 (129)
5 d2hk6a1 c.92.1.1 (A:2-310) Fer 24.2 51 0.0037 29.8 5.8 67 346-417 18-106 (309)
6 d1pbya1 a.3.1.7 (A:1-85) Quino 21.6 33 0.0024 25.9 3.3 34 364-397 33-66 (85)
7 d1ngka_ a.1.1.1 (A:) Protozoan 19.9 1.7E+02 0.012 21.9 8.6 33 381-413 77-113 (126)
8 d1ukwa2 e.6.1.1 (A:32-258) Med 18.7 1.5E+02 0.011 23.9 7.5 66 234-306 15-81 (227)
9 d2jdia1 a.69.1.1 (A:380-510) F 17.5 1.1E+02 0.0082 24.1 6.0 84 165-269 30-122 (131)
10 d1okra_ a.4.5.39 (A:) Methicil 17.4 1.9E+02 0.014 21.6 8.6 98 290-396 6-119 (120)
No 1
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=57.99 E-value=22 Score=27.31 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=74.8
Q ss_pred hcCCChHHHHHHHHHhhhHHHHHhhhhhcccchH-HHHHHHHhhcCchhhh-hhhhcccc--cCCCcchhHHHHHHHHHh
Q 012957 227 SSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFA-LYQALKKSLYKPAAFN-KGILFPLC--KSGTCNLREAVIIGSVIE 302 (452)
Q Consensus 227 ~Snl~~~~aqrF~~~VLLprvredI~e~KkLn~h-ly~ALkKalyKP~AFf-kGil~PL~--~s~~CTlrEA~IigSVl~ 302 (452)
+|||++.+.+.|-...-+ =|...+.+|++. +..+|...-+.|.... ..++.-.+ ..++++..+...+-+...
T Consensus 1 ~~~ls~~~i~~l~~~F~~----~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
T d1lkja_ 1 SSNLTEEQIAEFKEAFAL----FDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQL 76 (146)
T ss_dssp CCCCCHHHHHHHHHHHHH----HCCSSSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCSSSCCEEEHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH----HCCCCCCcEeHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCcccccHHHHHHHHHHhh
Confidence 589999999887332211 277888899987 5666777667766432 23333233 233455555444332222
Q ss_pred ccCCchhcHHHHHHHHhcccCCchHHH--HHHHHHHhhhcCcHHHHHHHHHHH
Q 012957 303 KISIPMLHSSVALLKLAEMEYCGTTSY--FIKLLLEKKYGLPYRVVDAIVAHF 353 (452)
Q Consensus 303 K~SiPvlHsaaAL~kl~~~~~sg~~s~--firvLldKKYaLPy~viDalV~hF 353 (452)
...-+ ---.....+.....-+|..+. |.++|-.=.+.++-..++.++.+|
T Consensus 77 ~~~~~-~~~~~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 128 (146)
T d1lkja_ 77 KSNDS-EQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 128 (146)
T ss_dssp CCCCH-HHHHHHHHHHHCSSSSCEEEHHHHHHHHHHHTCSCCHHHHHHHHHHH
T ss_pred ccccH-HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCcccHHHHHHHHHhc
Confidence 21111 112334466677788885444 888888889999999999988866
No 2
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.21 E-value=15 Score=25.30 Aligned_cols=34 Identities=6% Similarity=0.201 Sum_probs=27.9
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhhcCC
Q 012957 380 NELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRN 415 (452)
Q Consensus 380 ~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~~~~ 415 (452)
.-||++|+..|-......++ .+.+-+.+|....+
T Consensus 2 t~~s~~q~~~Le~~F~~~~~--P~~~~~~~LA~~lg 35 (53)
T d1le8a_ 2 SSISPQARAFLEQVFRRKQS--LNSKEKEEVAKKCG 35 (53)
T ss_dssp CCCCHHHHHHHHHHHHHCSC--CCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHC
Confidence 46899999999999987655 58999999987653
No 3
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=37.02 E-value=9.5 Score=26.81 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=29.4
Q ss_pred hhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhhcCC
Q 012957 378 YKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRN 415 (452)
Q Consensus 378 Yk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~~~~ 415 (452)
++.-+|++|.+.|..+....+| .+++-|.+|....+
T Consensus 2 ~Rt~fT~~Ql~~Le~~F~~~~y--p~~~~r~~LA~~lg 37 (57)
T d1jgga_ 2 YRTAFTRDQLGRLEKEFYKENY--VSRPRRCELAAQLN 37 (57)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSC--CCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHhC
Confidence 4567899999999999988766 48999999986543
No 4
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=32.29 E-value=38 Score=27.08 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=62.8
Q ss_pred CCChHH---HHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCChHHHHHHHHH
Q 012957 165 KLDESF---INLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKL 241 (452)
Q Consensus 165 ~l~pkV---vevY~~vG~~Ls~YrSGKLPKafKiiP~l~nWEeiL~lT~P~~WSp~A~~~aTriF~Snl~~~~aqrF~~~ 241 (452)
.||+.. ++--+++-++|+.=.-- .++-+++++ -+|++|+-|.-+++.....+|=..
T Consensus 30 dlD~~t~~~l~rG~rl~ElLKQ~q~~----------Pl~v~eQv~-----------iLyA~~~G~LD~ipv~~I~~fe~~ 88 (129)
T d1fx0a1 30 DLDKATQNQLARGQRLRELLKQPQSA----------PLTVEEQVM-----------TIYTGTNGYLDSLELDQVRKYLVE 88 (129)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCCCTTC----------CCCHHHHHH-----------HHHHHHTTSSSSSCHHHHHHHHHH
T ss_pred chhHHHHHhhhHHHHHHHHHHccccc----------CCCHHHHHH-----------HHHHHHcCccccCCHHHHHHHHHH
Confidence 577766 44457777777643322 345677776 469999999999999999998555
Q ss_pred hh------hHHHHHhhhhhcccchHHHHHHHHhh
Q 012957 242 VL------LPRIRDDIRKNKKLHFALYQALKKSL 269 (452)
Q Consensus 242 VL------LprvredI~e~KkLn~hly~ALkKal 269 (452)
++ .|-+.+.|.++++|+--+=..|++++
T Consensus 89 ll~~l~~~~~~il~~I~~~~~ltde~~~~L~~~i 122 (129)
T d1fx0a1 89 LRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAI 122 (129)
T ss_dssp HHHHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44 37889999999999988888888775
No 5
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]}
Probab=24.17 E-value=51 Score=29.78 Aligned_cols=67 Identities=10% Similarity=0.253 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhh--------hhcCHHHHHHHHHHHHh--------------CCCCCCC
Q 012957 346 VDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYK--------NELQKEDKDDLRILLKK--------------QKHKLVT 403 (452)
Q Consensus 346 iDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk--------~dls~eqk~~L~~Ll~~--------------~~H~~It 403 (452)
.++|..|+-.|..+.+.+|-+|... .++|+ +.+|..|.++|.+.|.. ..||.|
T Consensus 18 ~~dV~~yL~~~~~dr~~~~~~~~~~----~~~Y~~igg~SPL~~~t~~qa~~L~~~L~~~~~~~~~~v~~amry~~P~i- 92 (309)
T d2hk6a1 18 EEDIERYYTHIRRGRKPEPEMLQDL----KDRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFI- 92 (309)
T ss_dssp GGGHHHHHHHHTTTCCCCHHHHHHH----HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEESSSSSBH-
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHH----HHHHHHhCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEecccccccH-
Confidence 3567778888888888888877543 68898 67889999999887753 345555
Q ss_pred HHHHHHHhhcCCCC
Q 012957 404 PEIIRELDSSRNRG 417 (452)
Q Consensus 404 pEIrreL~~~~~R~ 417 (452)
.++.++|.+..++.
T Consensus 93 ~~~l~~l~~~g~~~ 106 (309)
T d2hk6a1 93 EDAVAEMHKDGITE 106 (309)
T ss_dssp HHHHHHHHHTTCCE
T ss_pred HHHHHHHHhcCCcc
Confidence 67778888766554
No 6
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=21.63 E-value=33 Score=25.94 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhC
Q 012957 364 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQ 397 (452)
Q Consensus 364 PVlWHQsLL~FvqrYk~dls~eqk~~L~~Ll~~~ 397 (452)
+--|...+..-++.|...|+++++..+.+-|-.+
T Consensus 33 ~~~W~~~V~~M~~~~Ga~l~~~e~~~Iv~YLa~~ 66 (85)
T d1pbya1 33 PEGWDMTVTRMMRNHGVALEPEERAAIVRHLSDT 66 (85)
T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4469999999999999999999999999998764
No 7
>d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
Probab=19.93 E-value=1.7e+02 Score=21.94 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=24.6
Q ss_pred hcCHHHHHHHHHHHH----hCCCCCCCHHHHHHHhhc
Q 012957 381 ELQKEDKDDLRILLK----KQKHKLVTPEIIRELDSS 413 (452)
Q Consensus 381 dls~eqk~~L~~Ll~----~~~H~~ItpEIrreL~~~ 413 (452)
.|++++.++-+.+++ ...+..++++.+.+|.+.
T Consensus 77 ~I~~~~fd~wl~~~~~al~~~~~~~~~~~~~~~l~~~ 113 (126)
T d1ngka_ 77 RISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDY 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 588999887766643 446778899998887654
No 8
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}
Probab=18.73 E-value=1.5e+02 Score=23.86 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhcCchhhhhhhhcccccCC-CcchhHHHHHHHHHhccCC
Q 012957 234 KAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSG-TCNLREAVIIGSVIEKISI 306 (452)
Q Consensus 234 ~aqrF~~~VLLprvredI~e~KkLn~hly~ALkKalyKP~AFfkGil~PL~~s~-~CTlrEA~IigSVl~K~Si 306 (452)
.+++|..-.+.|+.++ +.+...+...+|++|..+-| -|+.+|=.-.| ..++.++.++...+.+++.
T Consensus 15 ~~r~f~~~~~~p~a~~-~d~~~~~p~~~~~~l~~~G~------~~~~~P~~~GG~g~~~~~~~~v~e~~~~~~~ 81 (227)
T d1ukwa2 15 LARRFAKEVILPVAQE-YDEKEEVPWPVIEKLHEVGL------LNAIIPEEYGGMGLKMLDEVIVGEELAYACM 81 (227)
T ss_dssp HHHHHHHHTTGGGHHH-HHHHTCCCHHHHHHHHHTTC------TTTTSCGGGTSCCCCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhChHHHHH-HHhcCCCCHHHHHHHHhhhh------hhhccccccCcccccccccccchhhhccccc
Confidence 4778888888997754 77888999999999987632 25667755323 3667777777777776553
No 9
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.49 E-value=1.1e+02 Score=24.07 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=63.0
Q ss_pred CCChHH---HHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCChHHHHHHHHH
Q 012957 165 KLDESF---INLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKL 241 (452)
Q Consensus 165 ~l~pkV---vevY~~vG~~Ls~YrSGKLPKafKiiP~l~nWEeiL~lT~P~~WSp~A~~~aTriF~Snl~~~~aqrF~~~ 241 (452)
.||+.. ++--+++-.+|+.=..-+ ++-+|+++ -+|++|+-|.-++......+|=+.
T Consensus 30 dlD~~t~~~l~rG~rl~ElLKQ~q~~P----------l~v~eQv~-----------iL~A~~~G~lD~i~v~~I~~fe~~ 88 (131)
T d2jdia1 30 DLDAATQQLLSRGVRLTELLKQGQYSP----------MAIEEQVA-----------VIYAGVRGYLDKLEPSKITKFENA 88 (131)
T ss_dssp SSCHHHHHHHHHHHHHHHHTCCCSSCC----------CCHHHHHH-----------HHHHHHTTTTTTSCGGGHHHHHHH
T ss_pred hhhHHHHhhhhhHHHHHHHHhcccccc----------hhHHHHHH-----------HHHHHhcCCccccCHHHHHHHHHH
Confidence 577766 555678888887533333 34566665 469999999999999998887444
Q ss_pred hh------hHHHHHhhhhhcccchHHHHHHHHhh
Q 012957 242 VL------LPRIRDDIRKNKKLHFALYQALKKSL 269 (452)
Q Consensus 242 VL------LprvredI~e~KkLn~hly~ALkKal 269 (452)
.+ .|-+.+.|.++++|+--+=..|++++
T Consensus 89 ll~~l~~~~~~~l~~I~~~~~l~de~~~~L~~ai 122 (131)
T d2jdia1 89 FLSHVISQHQALLGKIRTDGKISEESDAKLKEIV 122 (131)
T ss_dssp HHHHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 33 57789999999999988888888876
No 10
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=17.43 E-value=1.9e+02 Score=21.56 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHhccCCchhcHHHHHHHHhcccC-CchHHHHHHHHHHhhhcCc---------------HHHHHHHHHHH
Q 012957 290 NLREAVIIGSVIEKISIPMLHSSVALLKLAEMEY-CGTTSYFIKLLLEKKYGLP---------------YRVVDAIVAHF 353 (452)
Q Consensus 290 TlrEA~IigSVl~K~SiPvlHsaaAL~kl~~~~~-sg~~s~firvLldKKYaLP---------------y~viDalV~hF 353 (452)
|..|-.|+..+=..-.+.+--...+|-. ..+| .++.+-+|..|.+|.|--- -+.+..++.-|
T Consensus 6 t~~E~~VM~~lW~~~~~t~~ei~~~l~~--~~~~~~sTv~t~L~rL~~Kg~l~r~~~gr~~~Y~~~~~~~~~~~~~~~~~ 83 (120)
T d1okra_ 6 SSAEWEVMNIIWMKKYASANNIIEEIQM--QKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNF 83 (120)
T ss_dssp CHHHHHHHHHHHHHSSEEHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhc--ccCccHHhHHHHHHHHHHCCCeEEEecCCceEEeecCCHHHHHHHHHHHH
Confidence 4445555555544444433333333322 1233 2366788999999987532 22233333333
Q ss_pred HhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHh
Q 012957 354 MRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKK 396 (452)
Q Consensus 354 lrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~Ll~~ 396 (452)
+...-+....+++ ..|+.. ..||+++.+.|.++|..
T Consensus 84 ~~~~~~~~~~~~~-----~~~~~~--~~ls~~el~~L~~lL~~ 119 (120)
T d1okra_ 84 INKVYKGGFNSLV-----LNFVEK--EDLSQDEIEELRNILNK 119 (120)
T ss_dssp HHHHSTTCHHHHH-----HHHHHH--SCCCHHHHHHHHHHHTC
T ss_pred HHHHHcccHHHHH-----HHHHHc--cCCCHHHHHHHHHHHhc
Confidence 3322222222222 345553 67999999999999865
Done!