Citrus Sinensis ID: 012958

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
Protein Sequence
MAKKQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED
Secondary Structure (PSIPRED)
cccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHccccccccccHHccccHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccccccccccccccccccccHccccccEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccHcEEccccccHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHEEccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccHHccccccEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
makkqkrerfqnpqpflpsndddksvasSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVleeseepnatksAFVFAEEeqskrrveededdiddfggfnetqsqfgnyeeeiDEDDERLLEAFLskdagpqvTLADLIIKKIKendaniasgetrplpkldeSFINLYKGVGEFLSKytagkmpkafkhipstqMWEQVLYltepekwtpnamFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKslykpaafnkgilfplcksgtcnlrEAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFledtrvmpvIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDssrnrgekegdlvsisypmsvinktieedrfdipdvpmeed
Flexible Loop (DISEMBL)
makkqkrerfqnpqpflpsndddksvASSKKRskaakhhqkqdkmissgissKILKEAMIQQKEVleeseepnatksafvfaeeeqskrrveededdiddfggfnetqsqfgnYEEEIDEDDERLLEAFlskdagpqvTLADLIIKKIkendaniasgetrplpkldESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRillkkqkhklvtpeiireldssrnrgekegdlvsisypmsvinktieedrfdipdvpmeed
Low Complexity Region (SEG)
MAKKQKRERFQNPQPFLPsndddksvasskkrskaakHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVeededdiddFGGFNETQSQFGNYeeeideddeRLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED
Disordered region (IsUnstruct)
*****************************************************************************************************************************LEAFLSKDAGPQVTLADLIIKKIKENDANI********PKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQ****DDLRILLKKQKHKLVTPEI*******************ISYPMSVIN******************
Disordered Region (DISOPRED)
*************************************************ISSKILKEAMIQQ**************************************FGGFNETQSQFGNYEEEIDEDDERLLE**************DLII*************************INLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEII**********************MSVINKTIEEDRFDIPDVPM***
Disordered Region (DISEMBL)
**********QNPQPFLPS**************************ISSGISSKILKEAMIQQ************TKSAFVF***************DIDDFGGFNETQSQFGNYEEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED
Disordered Region (DISPRO)
***************************************************SKILKEAMIQQKEVLEES***************************************S*FGNYEEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIA****RPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRN****EGDLVSISYPMSVINKTIEEDRFDIPDVP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKKQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	452	2.2.26 [Sep-21-2011]
Q5E9N0	435	Bystin OS=Bos taurus GN=B	yes	no	0.867	0.901	0.458	1e-101
Q13895	437	Bystin OS=Homo sapiens GN	yes	no	0.851	0.881	0.472	1e-100
O54825	436	Bystin OS=Mus musculus GN	yes	no	0.834	0.864	0.469	3e-97
A9UNU6	414	Bystin OS=Monosiga brevic	N/A	no	0.836	0.913	0.453	8e-97
Q80WL2	436	Bystin OS=Rattus norvegic	yes	no	0.816	0.846	0.476	2e-96
A7S7F2	430	Bystin OS=Nematostella ve	N/A	no	0.643	0.676	0.549	4e-95
Q20932	449	Cell adhesion protein byn	yes	no	0.840	0.846	0.463	3e-93
Q54IS0	475	Bystin OS=Dictyostelium d	yes	no	0.723	0.688	0.491	2e-89
P51406	436	Bystin OS=Drosophila mela	yes	no	0.831	0.862	0.444	5e-86
O60071	449	Uncharacterized protein C	yes	no	0.663	0.668	0.477	6e-79

>sp|Q5E9N0|BYST_BOVIN Bystin OS=Bos taurus GN=BYSL PE=2 SV=1

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/401 (45%), Positives = 271/401 (67%), Gaps = 9/401 (2%)

Query: 23  DKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFA 82
           D   A ++++ +      ++++ +   ++ +IL++A  QQ+E+  E+E  +  + A    
Sbjct: 27  DAVRAGTREKRRGRGTGDEEEEYVGPRLTRRILQQARQQQEEL--EAEHGSGDRPAVPRE 84

Query: 83  EEEQSKRRVEEDEDDIDDFGGFNETQSQFG-NYEEEI--DEDDERLLEAFLSKDAGPQVT 139
              +    V +D  D +++    +  ++ G  Y+ E+  D +DER +E F++++   + T
Sbjct: 85  RTTRLGPGVPQDGSDDEEWPTLEQAAARAGPGYQAEVVVDPEDERAIEMFMNQNPPARRT 144

Query: 140 LADLIIKKIKENDANIASGETR----PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKH 195
           LAD+I++K+ E    + +  +     P+P+LD   + +Y+GV E LSKY +GK+PKAFK 
Sbjct: 145 LADIIMEKLTEKQTEVETVMSEVSGFPVPQLDPRVLEVYRGVREVLSKYRSGKLPKAFKI 204

Query: 196 IPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNK 255
           IP+   WEQ+LY+TEPE WT  AM+QATRIF+SNL  + A+RFY LVLLPR+RDDI + K
Sbjct: 205 IPALSNWEQILYITEPEAWTAAAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDIAEYK 264

Query: 256 KLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVAL 315
           +L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A+
Sbjct: 265 RLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAM 324

Query: 316 LKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFV 375
           LK+AEMEY G  S F++LLL+KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL  V
Sbjct: 325 LKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLGFRTEKRELPVLWHQCLLTLV 384

Query: 376 QRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 416
           QRYK +L  E K+ L  LL+ Q H  ++PEI REL S+  R
Sbjct: 385 QRYKADLATEQKEALLELLRLQPHPQLSPEIRRELQSAVPR 425

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.
Bos taurus (taxid: 9913)

>sp|Q13895|BYST_HUMAN Bystin OS=Homo sapiens GN=BYSL PE=1 SV=3

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/402 (47%), Positives = 273/402 (67%), Gaps = 17/402 (4%)

Query: 27  ASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQ 86
           A  +++ +     + +++ +   +S +IL++A  QQ+E+  E+E     K A   A  E+
Sbjct: 31  AGVREKRRGRGTGEAEEEYVGPRLSRRILQQARQQQEEL--EAEHGTGDKPA---APRER 85

Query: 87  SKR---RVEED-EDDIDDFGGFNE---TQSQFGNYEEEI-DEDDERLLEAFLSKDAGPQV 138
           + R   R+ +D  DD D+     E   T +  G++ E + D +DER +E F++K+   + 
Sbjct: 86  TTRLGPRMPQDGSDDEDEEWPTLEKAATMTAAGHHAEVVVDPEDERAIEMFMNKNPPARR 145

Query: 139 TLADLIIKKIKENDANIASGETR----PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFK 194
           TLAD+I++K+ E    + +  +     P+P+LD   + +Y+GV E LSKY +GK+PKAFK
Sbjct: 146 TLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVREVLSKYRSGKLPKAFK 205

Query: 195 HIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKN 254
            IP+   WEQ+LY+TEPE WT  AM+QATRIF+SNL  + A+RFY LVLLPR+RDD+ + 
Sbjct: 206 IIPALSNWEQILYVTEPEAWTAAAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDVAEY 265

Query: 255 KKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVA 314
           K+L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A
Sbjct: 266 KRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAA 325

Query: 315 LLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAF 374
           +LK+AEMEY G  S F++LLL+KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL  
Sbjct: 326 MLKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLGFRTEKRELPVLWHQCLLTL 385

Query: 375 VQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 416
           VQRYK +L  + K+ L  LL+ Q H  ++PEI REL S+  R
Sbjct: 386 VQRYKADLATDQKEALLELLRLQPHPQLSPEIRRELQSAVPR 427

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits. May be required for trophinin-dependent regulation of cell adhesion during implantation of human embryos.

Homo sapiens (taxid: 9606)

>sp|O54825|BYST_MOUSE Bystin OS=Mus musculus GN=Bysl PE=1 SV=3

 Score =  355 bits (912), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 182/388 (46%), Positives = 261/388 (67%), Gaps = 11/388 (2%)

Query: 46  ISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDD--FGG 103
           +   +S +IL++A  QQ+E+  E++     +SA       +    + +D  D +D  +  
Sbjct: 49  VGPRLSRRILQQARQQQEEL--ETDHGAGDRSAPPRERATRLGPGLPQDGSDEEDEEWPT 106

Query: 104 FNETQSQFG-NYEEEI--DEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGET 160
             +     G +++ E+  D +DER +E F++K+   + TLAD+I++K+ E    + +  +
Sbjct: 107 LEKAAKMAGVDHQAEVIVDPEDERAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMS 166

Query: 161 R----PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTP 216
                P+P+LD   + +Y+GV E L KY +GK+PKAFK IP+   WEQ+LY+TEPE WT 
Sbjct: 167 EVSGFPMPQLDPRVLEVYRGVREVLCKYRSGKLPKAFKVIPALSNWEQILYVTEPEAWTA 226

Query: 217 NAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFN 276
            AM+QATRIF+SNL  + A+RFY LVLLPR+RDDI + K+L+F LY ALKK+L+KP A+ 
Sbjct: 227 AAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWF 286

Query: 277 KGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLE 336
           KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A+LK+AEMEY G  S F++LLL+
Sbjct: 287 KGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLD 346

Query: 337 KKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKK 396
           KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL   QRYK +L  E K+ L  LL+ 
Sbjct: 347 KKYALPYRVLDALVFHFLAFRTEKRQLPVLWHQCLLTLAQRYKADLATEQKEALLELLRL 406

Query: 397 QKHKLVTPEIIRELDSSRNRGEKEGDLV 424
           Q H  ++PEI REL S+  R  ++G + 
Sbjct: 407 QPHPQLSPEIRRELQSAVPRDVEDGGVT 434

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Mus musculus (taxid: 10090)

>sp|A9UNU6|BYST_MONBE Bystin OS=Monosiga brevicollis GN=bysl PE=3 SV=1

 Score =  354 bits (908), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 182/401 (45%), Positives = 266/401 (66%), Gaps = 23/401 (5%)

Query: 22  DDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVF 81
           DDKSV  +K+  +  +   + D+ + + ++ K  +  +I ++  L+++EE          
Sbjct: 20  DDKSVRRNKRSKQRGR--MQDDESVDAPLNEK--QAQVIARQAQLQQNEED--------V 67

Query: 82  AEEEQSKRRVE-----EDEDDIDDFGGFNETQSQFGNYEEEIDEDDERLLEAFLSKDAGP 136
           ++ EQ+ + V+     +DE   DD     +    F     EIDE DE  L AF+  +   
Sbjct: 68  SDSEQTGQPVDIDVPSDDEGQADDLAQPEDAYRHF-----EIDEHDEVALRAFMPAEPAQ 122

Query: 137 QVTLADLIIKKIKENDANIASGETRPLPK-LDESFINLYKGVGEFLSKYTAGKMPKAFKH 195
           + TLAD+I++KI+     +AS  ++  P+ L+   I +Y+GVG+ LS+Y +GK+PKAFK 
Sbjct: 123 RRTLADIIMEKIQGKRTEVASQVSQTGPRELNPKVIEVYQGVGQVLSRYRSGKLPKAFKI 182

Query: 196 IPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNK 255
           IP  + WE+++Y+TEPE WT  +M+ ATR+F+SNL  K A+RFY L+LLPR+RDDI + K
Sbjct: 183 IPRLKNWEEIVYITEPENWTAASMYAATRLFASNLKEKMAQRFYNLILLPRVRDDIAEYK 242

Query: 256 KLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVAL 315
           +L+F LYQA+KK+++KP AF KG L PLC++G C LREAVIIG ++ + SIP+LHSS A+
Sbjct: 243 RLNFHLYQAIKKAIFKPGAFFKGFLLPLCEAGDCTLREAVIIGGILVRKSIPVLHSSAAM 302

Query: 316 LKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFV 375
           LK+AEM Y G TS F+++LL+KKY LP+RVVDA+VAHF RF  D R +PV+WHQ LL FV
Sbjct: 303 LKMAEMPYSGATSIFLRVLLDKKYSLPFRVVDAVVAHFYRFNADHRQLPVLWHQCLLVFV 362

Query: 376 QRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 416
           QRYK ++  E K  L  +L+   H  +TPEI REL  S++R
Sbjct: 363 QRYKEDITSEQKRALLDVLRSHNHYAITPEIRRELVQSKSR 403

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Monosiga brevicollis (taxid: 81824)

>sp|Q80WL2|BYST_RAT Bystin OS=Rattus norvegicus GN=Bysl PE=2 SV=3

 Score =  353 bits (905), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/380 (47%), Positives = 256/380 (67%), Gaps = 11/380 (2%)

Query: 46  ISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDD--FGG 103
           +   +S +IL++A  QQ+E+  E+E     + A       +    V +D  D +D  +  
Sbjct: 49  VGPRLSRRILQQARQQQEEL--ETEHATGDRPAKPRERATRLGPGVPQDGSDEEDEEWPT 106

Query: 104 FNET-QSQFGNYEEEI--DEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGET 160
             +  +    N++ E+  D +DER +E F++K+   + TLAD+I++K+ E    + +  +
Sbjct: 107 LEKAAKMTVVNHQAEVVVDPEDERAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMS 166

Query: 161 R----PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTP 216
                P+P+LD   + +Y+GV E L KY +G +PKAFK IP+   WEQ+LY+TEPE WT 
Sbjct: 167 EVSGFPMPQLDPRVLEVYRGVREVLCKYRSGILPKAFKIIPALSNWEQILYVTEPEAWTA 226

Query: 217 NAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFN 276
            AM+QATRIF+SNL  + A+RFY LVLLPR+RDDI + K+L+F LY ALKK+L+KP A+ 
Sbjct: 227 AAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWF 286

Query: 277 KGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLE 336
           KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A+LK+AEMEY G +S F++LLL+
Sbjct: 287 KGILIPLCESGTCTLREAIIVGSIISKCSIPVLHSSAAMLKIAEMEYSGASSIFLRLLLD 346

Query: 337 KKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKK 396
           KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL   QRYK +L  E K+ L  LL+ 
Sbjct: 347 KKYALPYRVLDALVFHFLAFRTEKRQLPVLWHQCLLTLAQRYKADLATEQKEALLELLRL 406

Query: 397 QKHKLVTPEIIRELDSSRNR 416
           Q H  ++PEI REL S+  R
Sbjct: 407 QPHPQLSPEIRRELQSAVPR 426

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Rattus norvegicus (taxid: 10116)

>sp|A7S7F2|BYST_NEMVE Bystin OS=Nematostella vectensis GN=bysl PE=3 SV=1

 Score =  348 bits (894), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 161/293 (54%), Positives = 218/293 (74%), Gaps = 2/293 (0%)

Query: 126 LEAFLSKDAGPQVTLADLIIKKIKENDANIAS--GETRPLPKLDESFINLYKGVGEFLSK 183
            E F+S++A  + TLAD+I++KI++    I S   E    P++DE  + ++KGVGE L K
Sbjct: 127 FEMFMSQEAPTRRTLADVIMEKIQDKKTEIESHMSEQSTAPQMDERLVKVFKGVGEILKK 186

Query: 184 YTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVL 243
           Y +GK+PKAFK IPS   WE+VL++TEP++W+  A+FQAT+IF SNLNAK A+RF+ LVL
Sbjct: 187 YRSGKLPKAFKFIPSLTNWEEVLFITEPDEWSAAALFQATKIFVSNLNAKMAQRFFNLVL 246

Query: 244 LPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEK 303
           LPRI+DDI + K+L++ LY ALKK+L+KPAAF KGIL P+C+SG C+LREA+II SV+ K
Sbjct: 247 LPRIQDDIAEYKRLNYHLYMALKKALFKPAAFFKGILLPMCESGNCSLREAIIISSVLAK 306

Query: 304 ISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM 363
            +IP+LHSS  +LK+AEM Y G  S F++ L +KKY LPYRV+DA V HF+RFL D R +
Sbjct: 307 TTIPVLHSSAVILKIAEMNYSGANSIFLRTLFDKKYALPYRVIDAAVYHFLRFLTDKRTL 366

Query: 364 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 416
           PV+WHQ LL FVQRYK ++  E K+ L  L +   H  +TPE+ REL  S++R
Sbjct: 367 PVLWHQCLLTFVQRYKEDISSEQKEALMELCRVHVHDKITPEVRRELVHSKSR 419

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Nematostella vectensis (taxid: 45351)

>sp|Q20932|BYN1_CAEEL Cell adhesion protein byn-1 OS=Caenorhabditis elegans GN=byn-1 PE=3 SV=2

 Score =  342 bits (878), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 182/393 (46%), Positives = 255/393 (64%), Gaps = 13/393 (3%)

Query: 30  KKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKR 89
           +++ K  +   + D+ +   +SSKIL EA   +K++LEE+ E   T+SA     + Q   
Sbjct: 36  REKQKRKREDSQTDEFVPDSLSSKILNEA---RKQLLEEALERQETESATSSVPKRQRGA 92

Query: 90  RVEED-EDDIDDFGGFNETQSQFGNYEE---EIDEDDERLLEAFLSKDAGPQVTLADLII 145
            +  D   D  D    +  +     +E+   E+D  DE  L  FL KDA    TL D+I 
Sbjct: 93  WLGADASGDKSDDDDDDNEEEDDNGFEDQVVELDPRDEADLARFLKKDAIQMSTLYDIIQ 152

Query: 146 KKI--KENDANIASGETRP----LPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPST 199
            KI  K+NDA +A  +  P    +  +D   + +Y+ +G+++SKY +GK+PKAFK IP  
Sbjct: 153 AKIEAKQNDAELALSQVDPNEFNMRDMDPEVVEMYEQIGQYMSKYRSGKVPKAFKIIPKM 212

Query: 200 QMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHF 259
             WEQ+L+LT+PE WT  AM+QATR+F+SN+N K  +RFY LVLLPR+RDDI + KKL++
Sbjct: 213 INWEQILFLTKPETWTAAAMYQATRLFASNMNPKMCQRFYTLVLLPRLRDDIDEFKKLNY 272

Query: 260 ALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLA 319
            LYQAL K++YKPAAF KG++ PL +SGTC LREAVI  SV+ K+ IP+ HS+ A+L++A
Sbjct: 273 HLYQALCKAIYKPAAFFKGLILPLLESGTCTLREAVIFSSVLTKVPIPIFHSAAAMLRIA 332

Query: 320 EMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYK 379
           EMEY G  S F++ L++KKY LPYR VD +V HF+R   D R MPV+WHQ LLA  QRYK
Sbjct: 333 EMEYTGANSVFLRALIDKKYALPYRAVDGVVNHFIRLKTDERDMPVLWHQCLLALCQRYK 392

Query: 380 NELQKEDKDDLRILLKKQKHKLVTPEIIRELDS 412
           N+L  E K  +  L++   H L++PEI REL+S
Sbjct: 393 NDLNAEQKAAIYELIRFHGHYLISPEIRRELES 425

Caenorhabditis elegans (taxid: 6239)

>sp|Q54IS0|BYST_DICDI Bystin OS=Dictyostelium discoideum GN=bysl PE=3 SV=1

 Score =  330 bits (846), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/342 (49%), Positives = 240/342 (70%), Gaps = 15/342 (4%)

Query: 87  SKRRVE-EDEDDIDDFGGFNETQSQFG-NYEEEIDEDDERLLEAFLSKDAG--------P 136
           +KRR    D D+ D F  F++T+SQFG   E EIDE+DER+L  F+    G         
Sbjct: 122 NKRRSNGNDFDENDGFEQFSDTESQFGVGGEVEIDEEDERVLSMFMGGGGGDGQEQQFQT 181

Query: 137 QVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHI 196
           + TL D+I  K+KE+++   S E    PK+    I++Y  VG+ L  YT+GK+P+AF+ +
Sbjct: 182 RFTLGDIIESKLKEHESRQVSSENAINPKV----IDVYTKVGKLLETYTSGKIPRAFRIL 237

Query: 197 PSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKK 256
           P+   WE +LYLT P+KWTP+++  AT++F  + N+K  +RF  +V+LPR+RD+I + KK
Sbjct: 238 PNFTNWEDLLYLTRPDKWTPHSIRVATKLFCMSTNSKITQRFLSIVVLPRVRDNIAEYKK 297

Query: 257 LHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALL 316
           L++ LY ALKKSLY+PAAF K IL PL +SG C L EA IIGSV+ K+SIP+LHSSVAL+
Sbjct: 298 LNYHLYMALKKSLYRPAAFYKAILLPLAESGDCTLLEAKIIGSVVCKVSIPVLHSSVALM 357

Query: 317 KLAEM-EYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFV 375
           KL+++  Y G TS FI++L +KKY LPYRV+D +V HF+ F E+ R +PV+WH++LL+FV
Sbjct: 358 KLSQLTRYNGATSMFIRMLCDKKYALPYRVIDGLVDHFVMFDEEVRELPVLWHRALLSFV 417

Query: 376 QRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRG 417
           QRYK ++ K+ K+ L+I+L+K  H ++T EI REL  S +RG
Sbjct: 418 QRYKTDITKDQKEKLKIILRKHNHHIITAEIRRELFFSNSRG 459

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Dictyostelium discoideum (taxid: 44689)

>sp|P51406|BYS_DROME Bystin OS=Drosophila melanogaster GN=bys PE=1 SV=2

 Score =  318 bits (815), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 177/398 (44%), Positives = 250/398 (62%), Gaps = 22/398 (5%)

Query: 26  VASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEE 85
           VA +K + K  K   ++   I +  S KIL  A +QQ E+ EE+     T     F+  +
Sbjct: 26  VAKNKNKDKV-KLRAEESANIDARSSQKILAAAKLQQLELDEENFPSLVTVKKVNFSLND 84

Query: 86  QSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDDERLLEAFL--SKDAGPQVTLADL 143
                V+EDE+        NET       + ++DEDD    E F   +++    + L+ +
Sbjct: 85  G---HVKEDEE-------VNETDLM---ADLDMDEDDVAAFERFQQPAQEGKRTLHLSKM 131

Query: 144 IIKKIKENDANIAS-----GETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPS 198
           I++KI+E +A+I +     G  + + ++D     +Y+GV + L +Y +GK+PKAFK IP 
Sbjct: 132 IMQKIQEKEADIHTKISDEGSLK-IEEIDPKVKEMYEGVRDVLKRYRSGKIPKAFKIIPK 190

Query: 199 TQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLH 258
            + WEQ+L++TEP  W+  AMFQ TRIF S L+   A+RFY LVLLPR+RDD+ + KKL+
Sbjct: 191 LRNWEQILFITEPHNWSAAAMFQGTRIFCSVLSQAMAQRFYNLVLLPRVRDDLCEYKKLN 250

Query: 259 FALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKL 318
             LY ALK++L+KPAAF KGI+ PL + G C LREA+I GSV+ + SIP+LHSS  LLK+
Sbjct: 251 MHLYNALKRALFKPAAFMKGIILPLLEGGDCTLREAIIFGSVVARSSIPVLHSSACLLKI 310

Query: 319 AEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRY 378
            EM Y G  S FI+  L+K+Y LPYRVVDA V HF+RF  D R +PV+WHQSLL F QRY
Sbjct: 311 CEMAYSGANSIFIRYFLDKRYALPYRVVDAAVFHFLRFENDKRELPVLWHQSLLTFAQRY 370

Query: 379 KNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 416
           KN++  E +D L  LLKK+ H  +TP++ REL ++  R
Sbjct: 371 KNDISSEQRDALLQLLKKKSHFKITPDVRRELQAASCR 408

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Drosophila melanogaster (taxid: 7227)

>sp|O60071|YBB9_SCHPO Uncharacterized protein C13G1.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13G1.09 PE=1 SV=1

 Score =  295 bits (754), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 152/318 (47%), Positives = 215/318 (67%), Gaps = 18/318 (5%)

Query: 118 IDEDDERLLEAFLSKDAGPQ--------VTLADLIIKKIKENDANIASGETRP------- 162
           ID+ D  L + FL   +G +         +L+DLI++KI E +A  A GE  P       
Sbjct: 127 IDDADRDLFDRFLPTVSGEEGDLTEEKTTSLSDLIMQKINEAEAR-ARGEYIPSAEEEEN 185

Query: 163 -LPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQ 221
            LP L    I +Y  VG  LSKY +GK+PKAFK IP+   WE +LYLT P+ WTP+A ++
Sbjct: 186 ALPPLPPKVIEVYSKVGVLLSKYRSGKIPKAFKIIPTLSNWEDILYLTRPDMWTPHACYE 245

Query: 222 ATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILF 281
           ATRIF SNL   +A+ F  +++L R+RDDIR+NKKL++ LY ALKK+LYKP+++ KG LF
Sbjct: 246 ATRIFISNLKPVQAQHFLTVIILERVRDDIRENKKLNYHLYMALKKALYKPSSWFKGFLF 305

Query: 282 PLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGL 341
           PL +   C LREA IIGS+++K+S+P+LHS+ ALL+L E +  G TS FI++LL+KKY L
Sbjct: 306 PLVQEN-CTLREAAIIGSILQKVSVPVLHSAAALLRLTEFDLSGATSVFIRILLDKKYAL 364

Query: 342 PYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKL 401
           PY+V+D++V +FMR+    R + V+ HQS+L F QRYK ++  E KD L  +++ + H  
Sbjct: 365 PYKVLDSLVFYFMRWKSLERPLAVLEHQSMLVFAQRYKFDITPEQKDALLEVVRLKGHYS 424

Query: 402 VTPEIIRELDSSRNRGEK 419
           + PEI REL +S +RGE+
Sbjct: 425 IGPEIRRELLNSASRGEE 442

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
224121608	443	predicted protein [Populus trichocarpa]	0.975	0.995	0.754	0.0
118483587	443	unknown [Populus trichocarpa]	0.975	0.995	0.754	0.0
255549595	448	Bystin, putative [Ricinus communis] gi|2	0.984	0.993	0.771	0.0
225463866	440	PREDICTED: bystin-like [Vitis vinifera]	0.969	0.995	0.729	0.0
225436863	440	PREDICTED: bystin-like [Vitis vinifera]	0.969	0.995	0.723	0.0
224117072	429	predicted protein [Populus trichocarpa]	0.913	0.962	0.755	0.0
356505324	442	PREDICTED: bystin-like [Glycine max]	0.975	0.997	0.717	1e-178
296086673	431	unnamed protein product [Vitis vinifera]	0.949	0.995	0.700	1e-176
356511772	441	PREDICTED: bystin-like [Glycine max]	0.971	0.995	0.712	1e-176
296081054	417	unnamed protein product [Vitis vinifera]	0.911	0.988	0.718	1e-171

>gi|224121608|ref|XP_002330743.1| predicted protein [Populus trichocarpa] gi|222872519|gb|EEF09650.1| predicted protein [Populus trichocarpa]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/448 (75%), Positives = 397/448 (88%), Gaps = 7/448 (1%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KRER QNP+PFLP  D D   +S+K RSKA+KHHQKQ KMISSG+SSKILK+A+IQQKE
Sbjct: 3   KKRERHQNPEPFLP-EDTDSIASSTKTRSKASKHHQKQQKMISSGMSSKILKQALIQQKE 61

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDDER 124
           +  ++EE N   +A      E       ED+  IDDF GF+ETQSQF +Y EEIDE+DE+
Sbjct: 62  I--QAEERNPNFNALEEELPEPEGEECAEDQ--IDDFSGFSETQSQFNDYPEEIDENDEK 117

Query: 125 LLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKY 184
           LLEAFLSKDAGPQ TLADLII+K+K+ DAN++S E +P+PKLD+S I+LYKGVGE+LSKY
Sbjct: 118 LLEAFLSKDAGPQRTLADLIIEKLKKTDANVSS-ELQPIPKLDQSLIDLYKGVGEYLSKY 176

Query: 185 TAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLL 244
           TAGK+PKAFKHIPS Q+WE +LYLTEP+KW+PNAM+QATRIFSSNL AKKAERFY+LVLL
Sbjct: 177 TAGKIPKAFKHIPSMQLWEDILYLTEPQKWSPNAMYQATRIFSSNLGAKKAERFYRLVLL 236

Query: 245 PRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKI 304
           PR+RDDIR NK+LHF+LYQALKKSLYKPAAFNKGIL PLCKSGTC LREAV++GS+I+K+
Sbjct: 237 PRVRDDIRTNKRLHFSLYQALKKSLYKPAAFNKGILLPLCKSGTCTLREAVVVGSIIQKV 296

Query: 305 SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMP 364
           SIPMLHS VA+LKLAEMEYCGTTSYFIKLLL+KKY LP+RV+DA+VAHFMRFLEDTR+MP
Sbjct: 297 SIPMLHSCVAVLKLAEMEYCGTTSYFIKLLLDKKYALPFRVLDAVVAHFMRFLEDTRIMP 356

Query: 365 VIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLV 424
           VIWHQSLL+FVQRYKNELQKEDKD+LR L+ +QKHKLV+PEIIRELD+SRNRGEK+ D +
Sbjct: 357 VIWHQSLLSFVQRYKNELQKEDKDNLRRLVLRQKHKLVSPEIIRELDNSRNRGEKD-DPM 415

Query: 425 SISYPMSVINKTIEEDRFDIPDVPMEED 452
           SI+ P+SVINKTIEEDRFDIP+VPMEED
Sbjct: 416 SITSPVSVINKTIEEDRFDIPEVPMEED 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483587|gb|ABK93690.1| unknown [Populus trichocarpa]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/448 (75%), Positives = 392/448 (87%), Gaps = 7/448 (1%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KRER QNP+PFLP  D D   +S+K RSKA+KHHQKQ KMISSG+SSKILK+A+IQQKE
Sbjct: 3   KKRERHQNPEPFLP-EDTDSIASSTKTRSKASKHHQKQQKMISSGMSSKILKQALIQQKE 61

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDDER 124
           +  E   PN         EE       E  ED IDDF GF+E QSQF +Y E IDE+DE+
Sbjct: 62  IQAEERNPNFN----ALEEELLEPEGEECAEDQIDDFSGFSEAQSQFNDYPEGIDENDEK 117

Query: 125 LLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKY 184
           LLEAFLSKDAGPQ TLADLII+K+K+ DAN++S E +P+PKLD+S I+LYKGVGE+LSKY
Sbjct: 118 LLEAFLSKDAGPQRTLADLIIEKLKKTDANVSS-ELQPIPKLDQSLIDLYKGVGEYLSKY 176

Query: 185 TAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLL 244
           TAGK+PKAFKHIPS Q+WE +LYLTEP+KW+PNAM+QATRIFSSNL AKKAERFY+LVLL
Sbjct: 177 TAGKIPKAFKHIPSMQLWEDILYLTEPQKWSPNAMYQATRIFSSNLGAKKAERFYRLVLL 236

Query: 245 PRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKI 304
           PR+RDDIR NK+LHF+LYQALKKSLYKPAAFNKGIL PLCKSGTC LREAVI+GS+I+K+
Sbjct: 237 PRVRDDIRTNKRLHFSLYQALKKSLYKPAAFNKGILLPLCKSGTCTLREAVIVGSIIQKV 296

Query: 305 SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMP 364
           SIPMLHS VA+LKLAEMEYCGTTSYFIKLLL+KKY LP+RV+DA+VAHFMRFLEDTR+MP
Sbjct: 297 SIPMLHSCVAVLKLAEMEYCGTTSYFIKLLLDKKYALPFRVLDAVVAHFMRFLEDTRIMP 356

Query: 365 VIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLV 424
           VIWHQSLL+FVQRYKNELQKEDKD+LR L+ +QKHKLV+PEIIRELD+SRNRGEK+ D +
Sbjct: 357 VIWHQSLLSFVQRYKNELQKEDKDNLRRLVLRQKHKLVSPEIIRELDNSRNRGEKD-DPM 415

Query: 425 SISYPMSVINKTIEEDRFDIPDVPMEED 452
           SI+ P+SVINKTIEEDRFDIP+VPMEED
Sbjct: 416 SITSPVSVINKTIEEDRFDIPEVPMEED 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549595|ref|XP_002515849.1| Bystin, putative [Ricinus communis] gi|223545004|gb|EEF46518.1| Bystin, putative [Ricinus communis]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/450 (77%), Positives = 408/450 (90%), Gaps = 5/450 (1%)

Query: 4   KQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQK 63
           K+KR R QNPQPF+    DD S ++SKKRSKA K HQKQ+KMISSG+SSKILKEAM  Q+
Sbjct: 3   KKKRSRHQNPQPFM-REVDDSSGSNSKKRSKAPKQHQKQEKMISSGMSSKILKEAM-IQQ 60

Query: 64  EVLEESEEPNATKSAFVFAEEEQSK-RRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDD 122
           + ++E EE N    AFV AEEE ++ +R E +E+D+DDFGGF+ETQ+QFG+Y+EEI+ED+
Sbjct: 61  KEIQEEEETNPINDAFVAAEEEAARHQREEVEEEDVDDFGGFDETQTQFGDYDEEINEDE 120

Query: 123 ERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLS 182
           E+LLEAFLSKDAG Q TLADLII+KIK+ DAN++S ET PLPKLDES I+LY+G+GEFLS
Sbjct: 121 EKLLEAFLSKDAGQQQTLADLIIEKIKKQDANVSS-ETHPLPKLDESLIDLYRGLGEFLS 179

Query: 183 KYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLV 242
           KYTAGKMPKAFKHIP+ Q+WE VLYLT+PE W+PNAM+QATRIF+SN  AKKAERFY+LV
Sbjct: 180 KYTAGKMPKAFKHIPAMQLWEDVLYLTKPENWSPNAMYQATRIFASNFGAKKAERFYRLV 239

Query: 243 LLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIE 302
           LLPRIRDDI+++K+LHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVI+GS+++
Sbjct: 240 LLPRIRDDIKQHKRLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIVGSIVQ 299

Query: 303 KISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRV 362
           K+SIPMLHSSVALLKLAEMEYCGTTSYFIKLL+EKKY LPYRVVDA+V+H+M+FL+DTR+
Sbjct: 300 KVSIPMLHSSVALLKLAEMEYCGTTSYFIKLLVEKKYALPYRVVDAVVSHYMKFLDDTRI 359

Query: 363 MPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGD 422
           MPVIWHQSLLAFVQRYKNELQKEDKD+LR L+ KQKHKLVTPEI+RELD+SRNRGEK+ D
Sbjct: 360 MPVIWHQSLLAFVQRYKNELQKEDKDNLRTLVGKQKHKLVTPEIVRELDNSRNRGEKD-D 418

Query: 423 LVSISYPMSVINKTIEEDRFDIPDVPMEED 452
            +SI+ P+SVINK IEEDRFDIPDVPMEED
Sbjct: 419 PMSITSPVSVINKVIEEDRFDIPDVPMEED 448

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463866|ref|XP_002267654.1| PREDICTED: bystin-like [Vitis vinifera]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/448 (72%), Positives = 389/448 (86%), Gaps = 10/448 (2%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KR +  NPQPFL   DDD  V SSKKRSK AK HQ ++K+ISSG+SSKILKEA++QQKE
Sbjct: 3   KKRSKHHNPQPFLA--DDD--VVSSKKRSKPAKLHQAEEKLISSGMSSKILKEALLQQKE 58

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDDER 124
           + +E+ + N   S+F   E+  +K    ++E+D+DDF GF+ETQS FG YEEEIDE+DE+
Sbjct: 59  IEDEARDQNP-HSSFFAVEDVPAK----DEEEDVDDFAGFDETQSHFGGYEEEIDEEDEK 113

Query: 125 LLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKY 184
           LLEAFLSK+AGP+ TLAD+I ++IKE D   +S E RPLPKLD S I+LYKGVG+ LS+Y
Sbjct: 114 LLEAFLSKNAGPERTLADVIAERIKEKDEKFSS-EARPLPKLDASIIDLYKGVGKLLSRY 172

Query: 185 TAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLL 244
           TAGK+PKAFKHIPS Q WE+VLYLTEPE W+PNA++QATRIF+SNL  KKAERFY+LVLL
Sbjct: 173 TAGKLPKAFKHIPSVQHWEEVLYLTEPENWSPNAVYQATRIFASNLGGKKAERFYRLVLL 232

Query: 245 PRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKI 304
           PR+R+DIRKNK+LHFALYQ LKKSLYKPAAF KGILFPLC+SGTCNLREAVIIGS+IEK+
Sbjct: 233 PRVREDIRKNKRLHFALYQTLKKSLYKPAAFFKGILFPLCESGTCNLREAVIIGSIIEKV 292

Query: 305 SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMP 364
           SIP LHSSVALLKLAEMEYCGTTSYFIKLLL+KKY LPYR VDA+VAHF+RF+EDTR+MP
Sbjct: 293 SIPALHSSVALLKLAEMEYCGTTSYFIKLLLDKKYALPYRAVDAVVAHFIRFIEDTRIMP 352

Query: 365 VIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLV 424
           VIWHQSLL FVQRYKN+L+KEDKD L+ L++ Q+H+LVTP+I REL++SRNRGE+E DL+
Sbjct: 353 VIWHQSLLTFVQRYKNQLRKEDKDSLKTLIENQRHRLVTPDISRELNNSRNRGEEEDDLM 412

Query: 425 SISYPMSVINKTIEEDRFDIPDVPMEED 452
            IS P+SVINKTIEEDRFDIPDVPMEED
Sbjct: 413 LISSPISVINKTIEEDRFDIPDVPMEED 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436863|ref|XP_002272540.1| PREDICTED: bystin-like [Vitis vinifera]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/448 (72%), Positives = 380/448 (84%), Gaps = 10/448 (2%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KR ++ NPQPFL     D  VASSKKRSK AKHHQ ++KMISSG+SSKILKEA+ QQKE
Sbjct: 3   KKRSKYHNPQPFLA----DDGVASSKKRSKPAKHHQAEEKMISSGMSSKILKEALFQQKE 58

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDDER 124
           + +E+ + N   S F   EE            D+DDF GF++TQS FG YEEEIDE+DE+
Sbjct: 59  IEDEARDQNPNSSFFAVEEEPAKDEEE-----DVDDFAGFDDTQSHFGGYEEEIDEEDEK 113

Query: 125 LLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKY 184
           LLE FLSK+AGP+ TLAD+I +KIKE D   +S E RPLPKLD S I+LYKGVG+ L++Y
Sbjct: 114 LLEVFLSKNAGPERTLADVIAEKIKEKDEQFSS-EVRPLPKLDTSIIDLYKGVGKLLNRY 172

Query: 185 TAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLL 244
           TAGK+PKAFKHIPS Q WE+VLYLTEPE W+PNA++QATRIF+SNL  KKAERFY+LVLL
Sbjct: 173 TAGKLPKAFKHIPSVQHWEEVLYLTEPENWSPNAVYQATRIFASNLGGKKAERFYRLVLL 232

Query: 245 PRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKI 304
           PR+R+DI+KNK+LHFALYQ LKKSLYKPAAF KGILFPLC+SGTCNLREAVIIGS+IEK+
Sbjct: 233 PRVREDIQKNKRLHFALYQTLKKSLYKPAAFFKGILFPLCESGTCNLREAVIIGSIIEKV 292

Query: 305 SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMP 364
           SIP LHSSVALLKLAEMEYCGTTSYFIK+LL+KKY LPYR VDA+ AHF++F+EDTR+MP
Sbjct: 293 SIPALHSSVALLKLAEMEYCGTTSYFIKILLDKKYALPYRAVDAVAAHFIKFIEDTRIMP 352

Query: 365 VIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLV 424
           VIWHQSLL FVQRYKN+L+KEDKD L+ L++ Q+HKLVTPEI REL++SRNRGEKE DL+
Sbjct: 353 VIWHQSLLTFVQRYKNQLRKEDKDSLKTLIENQRHKLVTPEISRELNNSRNRGEKEDDLM 412

Query: 425 SISYPMSVINKTIEEDRFDIPDVPMEED 452
            IS P+SVINKTIEEDRFDIPDVPMEED
Sbjct: 413 LISSPISVINKTIEEDRFDIPDVPMEED 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117072|ref|XP_002317469.1| predicted protein [Populus trichocarpa] gi|222860534|gb|EEE98081.1| predicted protein [Populus trichocarpa]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/421 (75%), Positives = 370/421 (87%), Gaps = 8/421 (1%)

Query: 1   MAKKQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMI 60
           MAKK  RER QNP+PFL   +D  S+AS+K R+KA+KHHQKQ KMISSG+SSKILK A+I
Sbjct: 1   MAKK--RERHQNPEPFL--KEDTDSIASTKTRTKASKHHQKQQKMISSGMSSKILKAALI 56

Query: 61  QQKEV-LEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEID 119
           QQKE+  EE+ E N   +A      E+ + +  EDE  IDDF GF+ETQSQF +Y EEID
Sbjct: 57  QQKEIQAEEAGERNPNFNALEEELPEREEEQYAEDE--IDDFSGFSETQSQFNDYPEEID 114

Query: 120 EDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGE 179
           E+DE+LLEAFLSKDAGPQ TL DLII KIK+ DA+++S ET+P+PKLD+S I+LYKGVGE
Sbjct: 115 ENDEKLLEAFLSKDAGPQQTLTDLIIDKIKKRDAHVSS-ETQPMPKLDQSLIDLYKGVGE 173

Query: 180 FLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFY 239
           +LSKYTAGK+PKAFKHIPS Q+WE VLYLTEP+KW+P AM+QATRIFSSNL AKKAERFY
Sbjct: 174 YLSKYTAGKIPKAFKHIPSMQLWEDVLYLTEPQKWSPAAMYQATRIFSSNLGAKKAERFY 233

Query: 240 KLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGS 299
           +LVLLPR+RDDIR NK+LHF+LYQALKKSLYKPAAFNKGIL PLCKSGTCNLREAVI+GS
Sbjct: 234 RLVLLPRVRDDIRMNKRLHFSLYQALKKSLYKPAAFNKGILLPLCKSGTCNLREAVIVGS 293

Query: 300 VIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLED 359
           +I+K+SIP+LHS V LLKLAEM+YCGTTSYFIKLLL+KKY LPYRVVDA+V HFMRFLED
Sbjct: 294 IIQKVSIPVLHSCVTLLKLAEMDYCGTTSYFIKLLLDKKYALPYRVVDAVVGHFMRFLED 353

Query: 360 TRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEK 419
           TR+MPVIWHQSLL+FVQRYKNELQKEDKD+LR L+ +QKHKLV+PEIIRELD+SRNRGEK
Sbjct: 354 TRIMPVIWHQSLLSFVQRYKNELQKEDKDNLRRLVLRQKHKLVSPEIIRELDNSRNRGEK 413

Query: 420 E 420
           +
Sbjct: 414 D 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505324|ref|XP_003521441.1| PREDICTED: bystin-like [Glycine max]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 325/453 (71%), Positives = 381/453 (84%), Gaps = 12/453 (2%)

Query: 1   MAKKQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMI 60
           MAK+  +ER QNP+PF P   D    A +KKRSK  K HQ++++ I+  +SSKI+K+A+I
Sbjct: 1   MAKR--KERIQNPEPFDPYGADP---AKTKKRSKPPKRHQQEEQFIAPKLSSKIMKQALI 55

Query: 61  QQKEVLEE-SEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEID 119
           QQKE  +E + E NA  + F     E+     E+  DDIDDF GF+ETQSQF  Y+EEI+
Sbjct: 56  QQKEEEKEETHENNAAANLF-----EEVPNFEEDGGDDIDDFAGFSETQSQFAGYDEEIN 110

Query: 120 EDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGE 179
           E+DERL+EAF+SK+ G Q TLADLI+++IKE DA+IAS E RP+PKLD+S I++YKGVG 
Sbjct: 111 EEDERLMEAFISKEPGQQKTLADLIVQRIKEKDASIAS-ENRPVPKLDKSIIDIYKGVGT 169

Query: 180 FLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFY 239
            LS+YT GK+PKAFKHIPS Q+WE+VLY+TEPE W+PNA++QATRIF+SN  AKKAERFY
Sbjct: 170 HLSRYTIGKIPKAFKHIPSMQLWEEVLYITEPENWSPNALYQATRIFASNFGAKKAERFY 229

Query: 240 KLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGS 299
           KLVLLPR+R+DIRKNK+LHFALYQ LKK+LYKPAAF KGILFPLC+S TC LREAVIIGS
Sbjct: 230 KLVLLPRVREDIRKNKRLHFALYQTLKKALYKPAAFFKGILFPLCESRTCTLREAVIIGS 289

Query: 300 VIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLED 359
           +IEK+SIP LHSSVALLKL+ MEYCGTTSYFIKLLLEKKY LPYRVVDA+VAHFMRF  +
Sbjct: 290 IIEKVSIPPLHSSVALLKLSGMEYCGTTSYFIKLLLEKKYALPYRVVDAVVAHFMRFFNE 349

Query: 360 TRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEK 419
           TR+MPVIWHQSLLAFVQRYKNELQKEDKD LR LL+KQKHKLVTPEI RELD S NRGEK
Sbjct: 350 TRIMPVIWHQSLLAFVQRYKNELQKEDKDRLRNLLEKQKHKLVTPEISRELDHSCNRGEK 409

Query: 420 EGDLVSISYPMSVINKTIEEDRFDIPDVPMEED 452
           E DL+SIS P+ VINKTIEEDRFDIPDVPMEED
Sbjct: 410 EEDLMSISSPVYVINKTIEEDRFDIPDVPMEED 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086673|emb|CBI32308.3| unnamed protein product [Vitis vinifera]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/448 (70%), Positives = 370/448 (82%), Gaps = 19/448 (4%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KR ++ NPQPFL     D  VASSKKRSK AKHHQ ++KMISSG+SSKILKEA+ QQKE
Sbjct: 3   KKRSKYHNPQPFLA----DDGVASSKKRSKPAKHHQAEEKMISSGMSSKILKEALFQQKE 58

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDDER 124
           + +E+ + N   S F   EE            D+DDF GF++TQS FG YEEEIDE+DE+
Sbjct: 59  IEDEARDQNPNSSFFAVEEEPAKDEEE-----DVDDFAGFDDTQSHFGGYEEEIDEEDEK 113

Query: 125 LLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKY 184
           LLE FLSK+AGP+ TLAD+I +KIKE D   +S E RPLPKLD S I+LYKGVG+ L++Y
Sbjct: 114 LLEVFLSKNAGPERTLADVIAEKIKEKDEQFSS-EVRPLPKLDTSIIDLYKGVGKLLNRY 172

Query: 185 TAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLL 244
           TAGK+PKAFKHIPS Q WE+VLYLTEPE W+PNA++QATRIF+SNL  KKAERFY+LVLL
Sbjct: 173 TAGKLPKAFKHIPSVQHWEEVLYLTEPENWSPNAVYQATRIFASNLGGKKAERFYRLVLL 232

Query: 245 PRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKI 304
           PR+R+DI+KNK+LHFALYQ LKKSLYKPAAF KGILFPLC+SGTCNLREAVIIGS+IEK+
Sbjct: 233 PRVREDIQKNKRLHFALYQTLKKSLYKPAAFFKGILFPLCESGTCNLREAVIIGSIIEKV 292

Query: 305 SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMP 364
           SIP LHSSVALLKLAEMEYCGTTSYFIK+LL+KKY LPYR VDA+ AHF++F+EDTR+MP
Sbjct: 293 SIPALHSSVALLKLAEMEYCGTTSYFIKILLDKKYALPYRAVDAVAAHFIKFIEDTRIMP 352

Query: 365 VIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLV 424
           VIWHQSLL FVQRYKN+L+KEDKD L+ L++ Q+HKLVTPEI REL++SRNRGEKE DL+
Sbjct: 353 VIWHQSLLTFVQRYKNQLRKEDKDSLKTLIENQRHKLVTPEISRELNNSRNRGEKEDDLM 412

Query: 425 SISYPMSVINKTIEEDRFDIPDVPMEED 452
                     K  +EDRFDIPDVPMEED
Sbjct: 413 P---------KPSKEDRFDIPDVPMEED 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511772|ref|XP_003524597.1| PREDICTED: bystin-like [Glycine max]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 319/448 (71%), Positives = 374/448 (83%), Gaps = 9/448 (2%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +++ER QNP+PF P   D    A +KKRSKA K HQ++++ I+  +SSKI+K+A+IQQKE
Sbjct: 3   KRKERIQNPEPFDPYGADP---AKTKKRSKAPKRHQQEEQFIAPKLSSKIMKQALIQQKE 59

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDDER 124
             +E    N   + F     E+     E+  DDIDDF GF+ETQSQF  Y+EEI+E+DER
Sbjct: 60  EEKEEAPENNAANLF-----EEVPDVEEDGGDDIDDFAGFSETQSQFAEYDEEINEEDER 114

Query: 125 LLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKY 184
           L+EAF  K+ G Q TLADLI+++IKE DA++AS E RP+PKLD S I++YKGVG  LS+Y
Sbjct: 115 LMEAFALKEPGQQKTLADLIVQRIKEKDASVAS-ENRPVPKLDNSIIDIYKGVGTHLSRY 173

Query: 185 TAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLL 244
           T GK+PKAFKHIPS Q+WE+VLY+TEPE W+PNA++QATRIF+SN  AKKAERFYKLVLL
Sbjct: 174 TIGKIPKAFKHIPSMQLWEEVLYITEPENWSPNALYQATRIFASNFGAKKAERFYKLVLL 233

Query: 245 PRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKI 304
           PR+R+DIRKNK+LHFALYQ LKK+LYKPAAF KGILF LC+S TC LREAVIIGS+IEK+
Sbjct: 234 PRVREDIRKNKRLHFALYQTLKKALYKPAAFFKGILFSLCESRTCTLREAVIIGSIIEKV 293

Query: 305 SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMP 364
           SIP LHSSVALLKL+ MEYCGTTSYFIKLLLEKKY LPYRVVDA+VAHF RFL +TR+MP
Sbjct: 294 SIPPLHSSVALLKLSGMEYCGTTSYFIKLLLEKKYALPYRVVDAVVAHFTRFLNETRIMP 353

Query: 365 VIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLV 424
           VIWHQSLLAFVQRYKNELQKEDKD LR LL+KQKHKLVTPEI RELD SRNRGEKE DL+
Sbjct: 354 VIWHQSLLAFVQRYKNELQKEDKDRLRNLLEKQKHKLVTPEISRELDHSRNRGEKEEDLM 413

Query: 425 SISYPMSVINKTIEEDRFDIPDVPMEED 452
           SIS P+ VINKTIEEDRFDIPDVPMEED
Sbjct: 414 SISSPVYVINKTIEEDRFDIPDVPMEED 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081054|emb|CBI18335.3| unnamed protein product [Vitis vinifera]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 303/422 (71%), Positives = 364/422 (86%), Gaps = 10/422 (2%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KR +  NPQPFL   DDD  V SSKKRSK AK HQ ++K+ISSG+SSKILKEA++QQKE
Sbjct: 3   KKRSKHHNPQPFLA--DDD--VVSSKKRSKPAKLHQAEEKLISSGMSSKILKEALLQQKE 58

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEEEIDEDDER 124
           + +E+ + N   S+F   E+  +K    ++E+D+DDF GF+ETQS FG YEEEIDE+DE+
Sbjct: 59  IEDEARDQNP-HSSFFAVEDVPAK----DEEEDVDDFAGFDETQSHFGGYEEEIDEEDEK 113

Query: 125 LLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKY 184
           LLEAFLSK+AGP+ TLAD+I ++IKE D   +S E RPLPKLD S I+LYKGVG+ LS+Y
Sbjct: 114 LLEAFLSKNAGPERTLADVIAERIKEKDEKFSS-EARPLPKLDASIIDLYKGVGKLLSRY 172

Query: 185 TAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLL 244
           TAGK+PKAFKHIPS Q WE+VLYLTEPE W+PNA++QATRIF+SNL  KKAERFY+LVLL
Sbjct: 173 TAGKLPKAFKHIPSVQHWEEVLYLTEPENWSPNAVYQATRIFASNLGGKKAERFYRLVLL 232

Query: 245 PRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKI 304
           PR+R+DIRKNK+LHFALYQ LKKSLYKPAAF KGILFPLC+SGTCNLREAVIIGS+IEK+
Sbjct: 233 PRVREDIRKNKRLHFALYQTLKKSLYKPAAFFKGILFPLCESGTCNLREAVIIGSIIEKV 292

Query: 305 SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMP 364
           SIP LHSSVALLKLAEMEYCGTTSYFIKLLL+KKY LPYR VDA+VAHF+RF+EDTR+MP
Sbjct: 293 SIPALHSSVALLKLAEMEYCGTTSYFIKLLLDKKYALPYRAVDAVVAHFIRFIEDTRIMP 352

Query: 365 VIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLV 424
           VIWHQSLL FVQRYKN+L+KEDKD L+ L++ Q+H+LVTP+I REL++SRNRGE+E DL+
Sbjct: 353 VIWHQSLLTFVQRYKNQLRKEDKDSLKTLIENQRHRLVTPDISRELNNSRNRGEEEDDLM 412

Query: 425 SI 426
            I
Sbjct: 413 LI 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
TAIR|locus:2028686	444	ENP1 "AT1G31660" [Arabidopsis	0.973	0.990	0.594	9.5e-137
UNIPROTKB|Q13895	437	BYSL "Bystin" [Homo sapiens (t	0.641	0.663	0.554	2.1e-88
MGI|MGI:1858419	436	Bysl "bystin-like" [Mus muscul	0.659	0.683	0.546	2.7e-88
RGD|727959	436	Bysl "bystin-like" [Rattus nor	0.641	0.665	0.551	3.9e-87
UNIPROTKB|Q5E9N0	435	BYSL "Bystin" [Bos taurus (tax	0.820	0.852	0.463	8.9e-86
UNIPROTKB|F1NPV8	417	BYSL "Uncharacterized protein"	0.657	0.712	0.549	1e-84
WB|WBGene00000276	449	byn-1 [Caenorhabditis elegans	0.811	0.817	0.460	3.9e-83
FB|FBgn0010292	436	bys "by S6" [Drosophila melano	0.612	0.635	0.523	3.6e-78
DICTYBASE|DDB_G0288565	475	bysl "bystin" [Dictyostelium d	0.807	0.768	0.416	2.1e-77
POMBASE|SPBC13G1.09	449	SPBC13G1.09 "bystin family U3	0.780	0.786	0.430	1.6e-73

TAIR|locus:2028686 ENP1 "AT1G31660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
 Identities = 271/456 (59%), Positives = 336/456 (73%)

Query:     1 MAKKQKRERFQNPQPFLPXXXXXXXXXXXXXXXXXXXHHQKQDKMISSGISSKILKEAMI 60
             MAKK  R+R  N QPF+                     HQKQ+K+I +G+S KI+K+A+ 
Sbjct:     1 MAKK--RDRIVNTQPFISDDASVASSRKRSKVPKT---HQKQEKLIEAGMSEKIMKQALA 55

Query:    61 QQKEVL-EESEEPNATKSAFVFAEEE---QSKRRVXXXXXXXXXFGGFNETQSQFGNYXX 116
             QQKEV  EE+ E N + +AF  A      + ++ +         F G  E QSQF     
Sbjct:    56 QQKEVADEENAERNPSSAAFAVAGAATAGEEQKILEEEEDDIDDFDGTFENQSQFDKQEE 115

Query:   117 XXXXXXXRLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKG 176
                    +L E+FL+K+A PQ TL D+IIKK+K+ DA++A  E RP PK+D +   LYKG
Sbjct:   116 INEDDE-KLFESFLNKNAPPQRTLTDIIIKKLKDKDADLAE-EERPDPKMDPAITKLYKG 173

Query:   177 VGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAE 236
             VG+F+S+YT GK+PKAFK + S + WE VLYLTEPEKW+PNA++QATRIF+SNL  ++ +
Sbjct:   174 VGKFMSEYTVGKLPKAFKLVTSMEHWEDVLYLTEPEKWSPNALYQATRIFASNLKDRQVQ 233

Query:   237 RFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVI 296
             RFY  VLLPR+R+DIRK+KKLHFALYQALKKSLYKP+AFN+GILFPLCKSGTCNLREAVI
Sbjct:   234 RFYNYVLLPRVREDIRKHKKLHFALYQALKKSLYKPSAFNQGILFPLCKSGTCNLREAVI 293

Query:   297 IGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRF 356
             IGS++EK SIPMLHS VAL +LAEM+YCGTTSYFIK+LLEKKY +PYRV+DA+VAHFMRF
Sbjct:   294 IGSILEKCSIPMLHSCVALNRLAEMDYCGTTSYFIKVLLEKKYCMPYRVLDALVAHFMRF 353

Query:   357 LEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 416
             ++D RVMPVIWHQSLL FVQRYK E+ KEDK+ L+ LL++QKH LVTPEI+REL  SRNR
Sbjct:   354 VDDIRVMPVIWHQSLLTFVQRYKYEILKEDKEHLQTLLQRQKHHLVTPEILRELKDSRNR 413

Query:   417 GEKEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED 452
             GEKE  +V    P+       +EDRFDIP+VPMEED
Sbjct:   414 GEKEDPMVDNFAPVPA-----KEDRFDIPEVPMEED 444

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0006364 "rRNA processing" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

UNIPROTKB|Q13895 BYSL "Bystin" [Homo sapiens (taxid:9606)]

 Score = 856 (306.4 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
 Identities = 163/294 (55%), Positives = 219/294 (74%)

Query:   124 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIAS--GETR--PLPKLDESFINLYKGVGE 179
             R +E F++K+   + TLAD+I++K+ E    + +   E    P+P+LD   + +Y+GV E
Sbjct:   131 RAIEMFMNKNPPARRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVRE 190

Query:   180 FLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFY 239
              LSKY +GK+PKAFK IP+   WEQ+LY+TEPE WT  AM+QATRIF+SNL  + A+RFY
Sbjct:   191 VLSKYRSGKLPKAFKIIPALSNWEQILYVTEPEAWTAAAMYQATRIFASNLKERMAQRFY 250

Query:   240 KLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGS 299
              LVLLPR+RDD+ + K+L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+I+GS
Sbjct:   251 NLVLLPRVRDDVAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGS 310

Query:   300 VIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLED 359
             +I K SIP+LHSS A+LK+AEMEY G  S F++LLL+KKY LPYRV+DA+V HF+ F  +
Sbjct:   311 IITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLGFRTE 370

Query:   360 TRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSS 413
              R +PV+WHQ LL  VQRYK +L  + K+ L  LL+ Q H  ++PEI REL S+
Sbjct:   371 KRELPVLWHQCLLTLVQRYKADLATDQKEALLELLRLQPHPQLSPEIRRELQSA 424

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007155 "cell adhesion" evidence=TAS

GO:0007565 "female pregnancy" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:1858419 Bysl "bystin-like" [Mus musculus (taxid:10090)]

 Score = 857 (306.7 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
 Identities = 165/302 (54%), Positives = 221/302 (73%)

Query:   124 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIAS--GETR--PLPKLDESFINLYKGVGE 179
             R +E F++K+   + TLAD+I++K+ E    + +   E    P+P+LD   + +Y+GV E
Sbjct:   130 RAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVRE 189

Query:   180 FLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFY 239
              L KY +GK+PKAFK IP+   WEQ+LY+TEPE WT  AM+QATRIF+SNL  + A+RFY
Sbjct:   190 VLCKYRSGKLPKAFKVIPALSNWEQILYVTEPEAWTAAAMYQATRIFASNLKERMAQRFY 249

Query:   240 KLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGS 299
              LVLLPR+RDDI + K+L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+I+GS
Sbjct:   250 NLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGS 309

Query:   300 VIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLED 359
             +I K SIP+LHSS A+LK+AEMEY G  S F++LLL+KKY LPYRV+DA+V HF+ F  +
Sbjct:   310 IITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLAFRTE 369

Query:   360 TRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEK 419
              R +PV+WHQ LL   QRYK +L  E K+ L  LL+ Q H  ++PEI REL S+  R  +
Sbjct:   370 KRQLPVLWHQCLLTLAQRYKADLATEQKEALLELLRLQPHPQLSPEIRRELQSAVPRDVE 429

Query:   420 EG 421
             +G
Sbjct:   430 DG 431

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001825 "blastocyst formation" evidence=IMP

GO:0001829 "trophectodermal cell differentiation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007155 "cell adhesion" evidence=ISS

GO:0008283 "cell proliferation" evidence=IMP

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0045177 "apical part of cell" evidence=IDA

RGD|727959 Bysl "bystin-like" [Rattus norvegicus (taxid:10116)]

 Score = 845 (302.5 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 162/294 (55%), Positives = 217/294 (73%)

Query:   124 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIAS--GETR--PLPKLDESFINLYKGVGE 179
             R +E F++K+   + TLAD+I++K+ E    + +   E    P+P+LD   + +Y+GV E
Sbjct:   130 RAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVRE 189

Query:   180 FLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFY 239
              L KY +G +PKAFK IP+   WEQ+LY+TEPE WT  AM+QATRIF+SNL  + A+RFY
Sbjct:   190 VLCKYRSGILPKAFKIIPALSNWEQILYVTEPEAWTAAAMYQATRIFASNLKERMAQRFY 249

Query:   240 KLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGS 299
              LVLLPR+RDDI + K+L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+I+GS
Sbjct:   250 NLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGS 309

Query:   300 VIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLED 359
             +I K SIP+LHSS A+LK+AEMEY G +S F++LLL+KKY LPYRV+DA+V HF+ F  +
Sbjct:   310 IISKCSIPVLHSSAAMLKIAEMEYSGASSIFLRLLLDKKYALPYRVLDALVFHFLAFRTE 369

Query:   360 TRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSS 413
              R +PV+WHQ LL   QRYK +L  E K+ L  LL+ Q H  ++PEI REL S+
Sbjct:   370 KRQLPVLWHQCLLTLAQRYKADLATEQKEALLELLRLQPHPQLSPEIRRELQSA 423

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001825 "blastocyst formation" evidence=ISO

GO:0001829 "trophectodermal cell differentiation" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0008283 "cell proliferation" evidence=ISO

GO:0030182 "neuron differentiation" evidence=IEP

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042995 "cell projection" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0071347 "cellular response to interleukin-1" evidence=IEP

GO:0071363 "cellular response to growth factor stimulus" evidence=IEP

GO:0071407 "cellular response to organic cyclic compound" evidence=IEP

UNIPROTKB|Q5E9N0 BYSL "Bystin" [Bos taurus (taxid:9913)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 176/380 (46%), Positives = 251/380 (66%)

Query:    41 KQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVXXXXXXXXX 100
             ++++ +   ++ +IL++A  QQ+E+  E+E  +  + A       +    V         
Sbjct:    45 EEEEYVGPRLTRRILQQARQQQEEL--EAEHGSGDRPAVPRERTTRLGPGVPQDGSDDEE 102

Query:   101 FGGFNETQSQFG-NYXXXXXXX--XXRLLEAFLSKDAGPQVTLADLIIKKIKENDANIAS 157
             +    +  ++ G  Y           R +E F++++   + TLAD+I++K+ E    + +
Sbjct:   103 WPTLEQAAARAGPGYQAEVVVDPEDERAIEMFMNQNPPARRTLADIIMEKLTEKQTEVET 162

Query:   158 --GETR--PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEK 213
                E    P+P+LD   + +Y+GV E LSKY +GK+PKAFK IP+   WEQ+LY+TEPE 
Sbjct:   163 VMSEVSGFPVPQLDPRVLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYITEPEA 222

Query:   214 WTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPA 273
             WT  AM+QATRIF+SNL  + A+RFY LVLLPR+RDDI + K+L+F LY ALKK+L+KP 
Sbjct:   223 WTAAAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPG 282

Query:   274 AFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKL 333
             A+ KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A+LK+AEMEY G  S F++L
Sbjct:   283 AWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRL 342

Query:   334 LLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRIL 393
             LL+KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL  VQRYK +L  E K+ L  L
Sbjct:   343 LLDKKYALPYRVLDALVFHFLGFRTEKRELPVLWHQCLLTLVQRYKADLATEQKEALLEL 402

Query:   394 LKKQKHKLVTPEIIRELDSS 413
             L+ Q H  ++PEI REL S+
Sbjct:   403 LRLQPHPQLSPEIRRELQSA 422

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1NPV8 BYSL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 824 (295.1 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
 Identities = 167/304 (54%), Positives = 219/304 (72%)

Query:   124 RLLEAFLSKDAGPQVTLADLIIKKI--KENDANIASGET--RPLPKLDESFINLYKGVGE 179
             + LE F+S+    + TLAD+I++KI  K+ +   A  E   RP+P+LD   + +Y+GV E
Sbjct:   108 KALEVFMSRAPPLRRTLADVIMEKITEKQTEVQTALSELSGRPMPQLDPRVLEVYRGVRE 167

Query:   180 FLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFY 239
              LSKY +GK+PKAFK IP+   WEQ+LY+TEPE WT  AM+QATRIFSSNL  + A+RFY
Sbjct:   168 VLSKYRSGKLPKAFKIIPALSNWEQILYITEPETWTAAAMYQATRIFSSNLKERMAQRFY 227

Query:   240 KLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGS 299
              LVLLPR+RDDI + K+L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+IIGS
Sbjct:   228 NLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIIGS 287

Query:   300 VIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLED 359
             ++ K SIP+LHSS A+LK+AEM Y G  S F++LL++KKY LP+RVVDA+V HF+ F  D
Sbjct:   288 ILTKCSIPVLHSSAAMLKIAEMPYNGANSIFLRLLIDKKYALPFRVVDALVFHFLAFRTD 347

Query:   360 TRVMPVIWHQSLLAFVQRYKN--ELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRG 417
              R +PV+WHQS L+   R     EL K  K+ L  LLK   H  ++ EI REL +S+ R 
Sbjct:   348 QRTLPVLWHQSFLSLRVRXXKVLELLKFHKEVLLELLKFHSHPQISGEIRRELANSKTR- 406

Query:   418 EKEG 421
             + EG
Sbjct:   407 DVEG 410

GO:0005730 "nucleolus" evidence=IEA

WB|WBGene00000276 byn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 175/380 (46%), Positives = 242/380 (63%)

Query:    43 DKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVXXXXXXXXXFG 102
             D+ +   +SSKIL EA   +K++LEE+ E   T+SA     + Q    +           
Sbjct:    49 DEFVPDSLSSKILNEA---RKQLLEEALERQETESATSSVPKRQRGAWLGADASGDKSDD 105

Query:   103 GFNETQSQFGNYXXXXXXXXXRLLEA----FLSKDAGPQVTLADLIIKKI--KENDANIA 156
               ++ + +  N             EA    FL KDA    TL D+I  KI  K+NDA +A
Sbjct:   106 DDDDNEEEDDNGFEDQVVELDPRDEADLARFLKKDAIQMSTLYDIIQAKIEAKQNDAELA 165

Query:   157 SGETRP----LPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPE 212
               +  P    +  +D   + +Y+ +G+++SKY +GK+PKAFK IP    WEQ+L+LT+PE
Sbjct:   166 LSQVDPNEFNMRDMDPEVVEMYEQIGQYMSKYRSGKVPKAFKIIPKMINWEQILFLTKPE 225

Query:   213 KWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKP 272
              WT  AM+QATR+F+SN+N K  +RFY LVLLPR+RDDI + KKL++ LYQAL K++YKP
Sbjct:   226 TWTAAAMYQATRLFASNMNPKMCQRFYTLVLLPRLRDDIDEFKKLNYHLYQALCKAIYKP 285

Query:   273 AAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIK 332
             AAF KG++ PL +SGTC LREAVI  SV+ K+ IP+ HS+ A+L++AEMEY G  S F++
Sbjct:   286 AAFFKGLILPLLESGTCTLREAVIFSSVLTKVPIPIFHSAAAMLRIAEMEYTGANSVFLR 345

Query:   333 LLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 392
              L++KKY LPYR VD +V HF+R   D R MPV+WHQ LLA  QRYKN+L  E K  +  
Sbjct:   346 ALIDKKYALPYRAVDGVVNHFIRLKTDERDMPVLWHQCLLALCQRYKNDLNAEQKAAIYE 405

Query:   393 LLKKQKHKLVTPEIIRELDS 412
             L++   H L++PEI REL+S
Sbjct:   406 LIRFHGHYLISPEIRRELES 425

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0007276 "gamete generation" evidence=IMP

FB|FBgn0010292 bys "by S6" [Drosophila melanogaster (taxid:7227)]

 Score = 763 (273.6 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
 Identities = 147/281 (52%), Positives = 200/281 (71%)

Query:   140 LADLIIKKIKENDANI---ASGE-TRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKH 195
             L+ +I++KI+E +A+I    S E +  + ++D     +Y+GV + L +Y +GK+PKAFK 
Sbjct:   128 LSKMIMQKIQEKEADIHTKISDEGSLKIEEIDPKVKEMYEGVRDVLKRYRSGKIPKAFKI 187

Query:   196 IPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNK 255
             IP  + WEQ+L++TEP  W+  AMFQ TRIF S L+   A+RFY LVLLPR+RDD+ + K
Sbjct:   188 IPKLRNWEQILFITEPHNWSAAAMFQGTRIFCSVLSQAMAQRFYNLVLLPRVRDDLCEYK 247

Query:   256 KLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVAL 315
             KL+  LY ALK++L+KPAAF KGI+ PL + G C LREA+I GSV+ + SIP+LHSS  L
Sbjct:   248 KLNMHLYNALKRALFKPAAFMKGIILPLLEGGDCTLREAIIFGSVVARSSIPVLHSSACL 307

Query:   316 LKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFV 375
             LK+ EM Y G  S FI+  L+K+Y LPYRVVDA V HF+RF  D R +PV+WHQSLL F 
Sbjct:   308 LKICEMAYSGANSIFIRYFLDKRYALPYRVVDAAVFHFLRFENDKRELPVLWHQSLLTFA 367

Query:   376 QRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 416
             QRYKN++  E +D L  LLKK+ H  +TP++ REL ++  R
Sbjct:   368 QRYKNDISSEQRDALLQLLKKKSHFKITPDVRRELQAASCR 408

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

DICTYBASE|DDB_G0288565 bysl "bystin" [Dictyostelium discoideum (taxid:44689)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 162/389 (41%), Positives = 251/389 (64%)

Query:    40 QKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVXXXXXXXX 99
             +KQ+K+++     + ++  ++   + +++ ++          A+++ +KRR         
Sbjct:    84 EKQEKLLT--FEQERIQSKLLSFNDFIDDDDDDED-------ADQDDNKRRSNGNDFDEN 134

Query:   100 X-FGGFNETQSQFG-NYXXXXXXXXXRLLEAFLSKDAGP--------QVTLADLIIKKIK 149
               F  F++T+SQFG            R+L  F+    G         + TL D+I  K+K
Sbjct:   135 DGFEQFSDTESQFGVGGEVEIDEEDERVLSMFMGGGGGDGQEQQFQTRFTLGDIIESKLK 194

Query:   150 ENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLT 209
             E+++   S E    PK+    I++Y  VG+ L  YT+GK+P+AF+ +P+   WE +LYLT
Sbjct:   195 EHESRQVSSENAINPKV----IDVYTKVGKLLETYTSGKIPRAFRILPNFTNWEDLLYLT 250

Query:   210 EPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSL 269
              P+KWTP+++  AT++F  + N+K  +RF  +V+LPR+RD+I + KKL++ LY ALKKSL
Sbjct:   251 RPDKWTPHSIRVATKLFCMSTNSKITQRFLSIVVLPRVRDNIAEYKKLNYHLYMALKKSL 310

Query:   270 YKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEM-EYCGTTS 328
             Y+PAAF K IL PL +SG C L EA IIGSV+ K+SIP+LHSSVAL+KL+++  Y G TS
Sbjct:   311 YRPAAFYKAILLPLAESGDCTLLEAKIIGSVVCKVSIPVLHSSVALMKLSQLTRYNGATS 370

Query:   329 YFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKD 388
              FI++L +KKY LPYRV+D +V HF+ F E+ R +PV+WH++LL+FVQRYK ++ K+ K+
Sbjct:   371 MFIRMLCDKKYALPYRVIDGLVDHFVMFDEEVRELPVLWHRALLSFVQRYKTDITKDQKE 430

Query:   389 DLRILLKKQKHKLVTPEIIRELDSSRNRG 417
              L+I+L+K  H ++T EI REL  S +RG
Sbjct:   431 KLKIILRKHNHHIITAEIRRELFFSNSRG 459

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

POMBASE|SPBC13G1.09 SPBC13G1.09 "bystin family U3 and U14 snoRNA associated protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 723 (259.6 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
 Identities = 165/383 (43%), Positives = 236/383 (61%)

Query:    46 ISSGISSKILKEAMIQQKEVLEESEEP-NATKSAFVFAEEEQSKRRVXXXXXXXXXFGGF 104
             IS+G     L+   I+     EESE   N + S  + ++EE+    +         F  F
Sbjct:    81 ISNGHQKDTLENPAIESS--YEESEHARNVSDSESITSQEEEEYEELEIDDADRDLFDRF 138

Query:   105 NETQSQFGNYXXXXXXXXXRLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRP-- 162
               T S  G              E  L+++     +L+DLI++KI E +A  A GE  P  
Sbjct:   139 LPTVS--GE-------------EGDLTEEK--TTSLSDLIMQKINEAEAR-ARGEYIPSA 180

Query:   163 ------LPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTP 216
                   LP L    I +Y  VG  LSKY +GK+PKAFK IP+   WE +LYLT P+ WTP
Sbjct:   181 EEEENALPPLPPKVIEVYSKVGVLLSKYRSGKIPKAFKIIPTLSNWEDILYLTRPDMWTP 240

Query:   217 NAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFN 276
             +A ++ATRIF SNL   +A+ F  +++L R+RDDIR+NKKL++ LY ALKK+LYKP+++ 
Sbjct:   241 HACYEATRIFISNLKPVQAQHFLTVIILERVRDDIRENKKLNYHLYMALKKALYKPSSWF 300

Query:   277 KGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLE 336
             KG LFPL +   C LREA IIGS+++K+S+P+LHS+ ALL+L E +  G TS FI++LL+
Sbjct:   301 KGFLFPLVQEN-CTLREAAIIGSILQKVSVPVLHSAAALLRLTEFDLSGATSVFIRILLD 359

Query:   337 KKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKK 396
             KKY LPY+V+D++V +FMR+    R + V+ HQS+L F QRYK ++  E KD L  +++ 
Sbjct:   360 KKYALPYKVLDSLVFYFMRWKSLERPLAVLEHQSMLVFAQRYKFDITPEQKDALLEVVRL 419

Query:   397 QKHKLVTPEIIRELDSSRNRGEK 419
             + H  + PEI REL +S +RGE+
Sbjct:   420 KGHYSIGPEIRRELLNSASRGEE 442

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q20932	BYN1_CAEEL	No assigned EC number	0.4631	0.8407	0.8463	yes	no
O54825	BYST_MOUSE	No assigned EC number	0.4690	0.8340	0.8646	yes	no
Q80WL2	BYST_RAT	No assigned EC number	0.4763	0.8163	0.8463	yes	no
Q13895	BYST_HUMAN	No assigned EC number	0.4726	0.8517	0.8810	yes	no
Q5E9N0	BYST_BOVIN	No assigned EC number	0.4588	0.8672	0.9011	yes	no
P51406	BYS_DROME	No assigned EC number	0.4447	0.8318	0.8623	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	452
pfam05291	303	pfam05291, Bystin, Bystin	1e-166

>gnl|CDD|218540 pfam05291, Bystin, Bystin

 Score =  469 bits (1209), Expect = e-166
 Identities = 184/300 (61%), Positives = 236/300 (78%), Gaps = 6/300 (2%)

Query: 129 FLSKDAGPQVTLADLIIKKIKENDANIAS------GETRPLPKLDESFINLYKGVGEFLS 182
           F++KD G   TLAD+I++KI+E +A+         G   P  KLD   I +Y+ VGE LS
Sbjct: 1   FMNKDDGGTRTLADIIMEKIQEKEASGQGAGRDEEGNPSPEIKLDPKVIEVYEKVGELLS 60

Query: 183 KYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLV 242
           +Y +GK+PKAFK IP    WE +LYLT PE WTP+AM+ ATR+FSSNL  K+A+RFY+LV
Sbjct: 61  RYKSGKLPKAFKIIPKLSNWEDILYLTNPENWTPHAMYAATRLFSSNLKEKQAQRFYELV 120

Query: 243 LLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIE 302
           LLPR+R+DIR+NKKL+  LY ALKK+LYKPAAF KGILFPLC+SGTC LREA+IIGSV+ 
Sbjct: 121 LLPRVREDIRENKKLNVHLYNALKKALYKPAAFFKGILFPLCESGTCTLREAIIIGSVLA 180

Query: 303 KISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRV 362
           K+SIP+LHSS ALLKLAEM+Y G TS FI++LL+KKY LPYRVVDA+V HF+RF  + RV
Sbjct: 181 KVSIPVLHSSAALLKLAEMDYNGATSVFIRVLLDKKYALPYRVVDALVFHFLRFENEERV 240

Query: 363 MPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGD 422
           +PV+WHQSLL F QRYKN++ ++ K+ L  LL+K+KH L++PEI REL +SR+RG K+ +
Sbjct: 241 LPVLWHQSLLTFAQRYKNDITEDQKEALLDLLRKKKHHLISPEIRRELLASRSRGVKDPE 300

Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy. This family also includes the yeast protein ENP1. ENP1 is an essential protein in Saccharomyces cerevisiae and is localised in the nucleus. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective yeast cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits. Length = 303

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	452
KOG3871	449	consensus Cell adhesion complex protein bystin [Ex	100.0
PF05291	301	Bystin: Bystin; InterPro: IPR007955 Trophinin and	100.0
PF11510	263	FA_FANCE: Fanconi Anaemia group E protein FANCE; I	98.75
cd07439	254	FANCE_c-term Fanconi anemia complementation group	98.1
cd07313	104	terB_like_2 tellurium resistance terB-like protein	81.28

>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]

Probab=100.00  E-value=5.5e-157  Score=1169.74  Aligned_cols=426  Identities=55%  Similarity=0.855  Sum_probs=368.5

Q ss_pred             hcccCCCCcCCCCCCCCCCccccccc--chhhhhh--ccccCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCcccchh-h
Q 012958            6 KRERFQNPQPFLPSNDDDKSVASSKK--RSKAAKH--HQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAF-V   80 (452)
Q Consensus         6 kk~rh~pL~~qi~s~~~~~~~~~~~~--r~k~~~~--~~~~e~~vd~~~SrkIL~~Ar~Qq~E~~~e~~~~~~~~~~~-~   80 (452)
                      ++.+|.||.+||.   +++ +++.++  |+|.+++  ..++++|||+++|+|||++||+||.|+++|+.....+..++ .
T Consensus        10 ~~~~~~pl~kdl~---a~~-va~~k~~~r~k~k~~~e~~e~d~~ida~~S~KIL~~Ak~Qq~E~~~Ee~~~~~~~s~~~~   85 (449)
T KOG3871|consen   10 RKQRHAPLLKDLA---AGQ-VAKKKKLARSKVKKHDEANEEDGFIDAKASRKILQLAKEQQLELAEEENAESSRNSAFEA   85 (449)
T ss_pred             chhccCchhhhhH---HHh-hhhhhhhhhhhhhhhhhhccccccccchhhHHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            4567999999998   333 544544  5554444  34556899999999999999999999988776443332222 1


Q ss_pred             hhhHhhhhccCCCCcccccccCCCCcccc--ccCCcccccChHHHHHHHHHhccCCCCCcChHHHHHHHHhhhhhhh---
Q 012958           81 FAEEEQSKRRVEEDEDDIDDFGGFNETQS--QFGNYEEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANI---  155 (452)
Q Consensus        81 ~~~~~~~~~~~~dd~~~~~~~~~~~~~~~--~~~~e~~eideeDe~~l~~Fm~~~~~~~~tLADiImeKi~eke~~~---  155 (452)
                      .......+++++.+++++||++|++.+++  +++.+.+|||++|++.|++|++++++..+||+|+||+||+||++..   
T Consensus        86 ~~~~~~~~ee~~i~~~~eddi~D~~~~~d~~~eed~~~Eide~d~~~f~r~l~k~a~~~~tL~diIm~ki~ekead~~~~  165 (449)
T KOG3871|consen   86 RFTTASYGEEDEIEEEDEDDIDDFEMEEDDKEEEDEIVEIDEEDAALFERFLKKSADFNYTLADIIMAKIREKEADVETE  165 (449)
T ss_pred             hccccccccccccccchhcccccccccccchhhhhhhhhcCcchHHHHHHHhccccchhccHHHHHHHHHHHHHhhHHhh
Confidence            11100000111112222334444432222  1222469999999999999999999999999999999999999873   


Q ss_pred             -c--cCCCCCCCCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCCh
Q 012958          156 -A--SGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNA  232 (452)
Q Consensus       156 -~--~~~~~~~~~l~pkVvevY~~vG~~Ls~YrSGKLPKafKiiP~l~nWEeiL~lT~P~~WSp~A~~~aTriF~Snl~~  232 (452)
                       +  +..+.+++.|||+|+++|++||.+||+||||||||||||||+|.|||+|||||+|+.|||||||||||||+|||++
T Consensus       166 ~~~~~~~e~~~~~ldpkV~e~Y~~Vg~~lskyrsGKlPKaFKiIp~l~nWediLylT~Pe~Ws~~amyqaTRiF~SnL~~  245 (449)
T KOG3871|consen  166 QSDPDENEFPMPALDPKVIEMYEGVGSVLSKYRSGKLPKAFKIIPSLRNWEDILYLTEPEEWSPAAMYQATRIFASNLKP  245 (449)
T ss_pred             hcccccccCCCCCCCHHHHHHHHHHHHHHHHhhcCCCchhhhcccccccHhHheeecCccccCHHHHHHHHHHHHhcCCH
Confidence             2  2334567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhcCchhhhhhhhcccccCCCcchhHHHHHHHHHhccCCchhcHH
Q 012958          233 KKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSS  312 (452)
Q Consensus       233 ~~aqrF~~~VLLprvredI~e~KkLn~hly~ALkKalyKP~AFfkGil~PL~~s~~CTlrEA~IigSVl~K~SiPvlHsa  312 (452)
                      +|||||||+|||||||+||+++||||||||+|||||||||+|||||||||||++||||||||+||||||+||||||+|||
T Consensus       246 ~~~QrFynlvLLpRvRddi~e~kkLnyhLY~AlkKaLyKPsAffkG~l~PL~esgtCtlREAvI~gSvl~K~siPvlHSs  325 (449)
T KOG3871|consen  246 KMAQRFYNLVLLPRVRDDIREYKKLNYHLYQALKKALYKPSAFFKGILFPLVESGTCTLREAVIIGSVLAKVSIPVLHSS  325 (449)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhhHHHHHHHHHHhcCcHHHhccchhhhccCCCchHHHHHHHHHHHhhCcchhHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012958          313 VALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI  392 (452)
Q Consensus       313 aAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~  392 (452)
                      |||++||+|+|||+||+|||+||||||||||||||+||+|||||+++.|.|||+||||||+||||||+||++|||++|++
T Consensus       326 aallrl~em~ysgatSvFir~lLdKKYalPYrvvD~~V~hFmrf~~d~R~lpVlwHqslLtf~QRYK~di~~eqkdaLle  405 (449)
T KOG3871|consen  326 AALLRLAEMDYSGATSVFIRILLDKKYALPYRVVDALVFHFMRFRTDERVLPVLWHQSLLTFAQRYKNDITQEQKDALLE  405 (449)
T ss_pred             HHHHHHHhcccCCcchHHHHHHhhhhccchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCHHHHHHHhhcCCCCCCCCccccccccccccccccccccCCCCCCCCC
Q 012958          393 LLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPME  450 (452)
Q Consensus       393 Ll~~~~H~~ItpEIrreL~~~~~R~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  450 (452)
                      |+|.|+|+.|||||||||+++.+||+.+.+|               |++++.++|+|+
T Consensus       406 llr~~~H~~i~PEIrREL~~~~~r~~~~~~~---------------~~~~~~~~v~me  448 (449)
T KOG3871|consen  406 LLRLQGHYLIGPEIRRELLASASRDEEDPQM---------------EDRFADDDVEME  448 (449)
T ss_pred             HHHhcCCCcCCHHHHHHHHhccccCccccch---------------hhcccCCCcccC
Confidence            9999999999999999999999999976644               788888999886

>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation

Probab=100.00  E-value=2.4e-133  Score=984.59  Aligned_cols=295  Identities=62%  Similarity=1.049  Sum_probs=285.2

Q ss_pred             HhccCCCCCcChHHHHHHHHhhhhhhhc----cCCCCCC-CCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHH
Q 012958          129 FLSKDAGPQVTLADLIIKKIKENDANIA----SGETRPL-PKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWE  203 (452)
Q Consensus       129 Fm~~~~~~~~tLADiImeKi~eke~~~~----~~~~~~~-~~l~pkVvevY~~vG~~Ls~YrSGKLPKafKiiP~l~nWE  203 (452)
                      ||++++++++||||+||+||+|++++..    ++++.+. ..+||||++||++||.+||+||||||||||||||+|+|||
T Consensus         1 fm~~~~~~~~~Lad~I~~Ki~e~e~~~~~~~~~~~~~~~~~~l~~kVvevY~~vG~~Ls~YrSGkLPKafKiiP~l~nWE   80 (301)
T PF05291_consen    1 FMNEEAGQRRTLADIIMEKIKEKEAEQQGQQSDEEGKPEPEELDPKVVEVYTKVGELLSRYRSGKLPKAFKIIPSLPNWE   80 (301)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhHhhhccccCccCCCCCcccCCHHHHHHHHHHHHHHhhcCCCCCCcCeecccCchhHH
Confidence            8999999999999999999999998742    2223333 4899999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCchhHHHHhHHHhhcCCChHHHHHHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhcCchhhhhhhhccc
Q 012958          204 QVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPL  283 (452)
Q Consensus       204 eiL~lT~P~~WSp~A~~~aTriF~Snl~~~~aqrF~~~VLLprvredI~e~KkLn~hly~ALkKalyKP~AFfkGil~PL  283 (452)
                      +|||+|+|++|||||||+|||||+||||+++|||||++|||||||+||++|||||||||+|||||+|||+||||||||||
T Consensus        81 eiL~lT~P~~WSp~A~~~aTRiF~SnL~~~~aqrF~~~VLLprvredI~~~KKLn~hly~ALkKalyKP~AffkGil~PL  160 (301)
T PF05291_consen   81 EILYLTRPEKWSPHAMYEATRIFASNLNEKMAQRFYNLVLLPRVREDIAENKKLNYHLYMALKKALYKPAAFFKGILLPL  160 (301)
T ss_pred             HHHHhCChhhccHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCcHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcchhHHHHHHHHHhccCCchhcHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCc
Q 012958          284 CKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM  363 (452)
Q Consensus       284 ~~s~~CTlrEA~IigSVl~K~SiPvlHsaaAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~l  363 (452)
                      |+|||||+|||+||||||+||||||+||||||++||+|+|+|++|+|||+||+|||||||||||+||+||+||.++.++|
T Consensus       161 ~~sg~CTlrEA~Ii~svl~k~sipvlhsaaaL~kl~~~~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~~~~l  240 (301)
T PF05291_consen  161 CESGTCTLREAVIIGSVLAKVSIPVLHSAAALLKLAEMEYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRNDKRKL  240 (301)
T ss_pred             hcCCCccHHHHHHHHHHHHhcCCCchhHHHHHHHHHcCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhhcCCCCCCCCcc
Q 012958          364 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDL  423 (452)
Q Consensus       364 PVlWHQsLL~FvqrYk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~~~~R~~~~~~~  423 (452)
                      ||+||||||+||||||+|||+|||++|++||++|+|++|||||||||.+|++||++.++|
T Consensus       241 PVlWHq~lL~F~qrYk~di~~eqk~~L~~ll~~~~H~~ItpEIrreL~~~~~r~~~~~~~  300 (301)
T PF05291_consen  241 PVLWHQSLLVFVQRYKNDITEEQKEALLELLRKQKHPQITPEIRRELLASRSRGVEIMDM  300 (301)
T ss_pred             cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhcCCCCCCccCCC
Confidence            999999999999999999999999999999999999999999999999999999976654

Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].

>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair

Probab=98.75  E-value=4.9e-07  Score=89.71  Aligned_cols=229  Identities=16%  Similarity=0.224  Sum_probs=154.5

Q ss_pred             CCChHHHHHHHHHHHHHhhccc------CCCCccccccCCCc--hHHHHHhhcCCCCCchhHHHHhHHHh---hcCCChH
Q 012958          165 KLDESFINLYKGVGEFLSKYTA------GKMPKAFKHIPSTQ--MWEQVLYLTEPEKWTPNAMFQATRIF---SSNLNAK  233 (452)
Q Consensus       165 ~l~pkVvevY~~vG~~Ls~YrS------GKLPKafKiiP~l~--nWEeiL~lT~P~~WSp~A~~~aTriF---~Snl~~~  233 (452)
                      +||..+....-++-++|..-..      |..|..++++=..+  .-|-+-..-+=.+||..++++..+.+   ..+++-.
T Consensus         7 ~lp~~~~~~~~~lk~ll~~~~e~~~~~~~~~~~~lq~L~~csp~q~e~lc~~L~l~~lsd~~l~~lc~~ll~Ls~dls~~   86 (263)
T PF11510_consen    7 ELPKHIQDQVPRLKELLETESEGLEGLEDAPPSELQFLNECSPSQVEMLCSQLQLPQLSDDGLLQLCSSLLALSPDLSHS   86 (263)
T ss_dssp             ---HHHHHHHHHHHHHHHHHH-----------HHHHGGGG--HHHHHHHHHHHTGGG--HHHHHHHHHHHHH-SS---HH
T ss_pred             hCcHHHHHHHHHHHHHHHHhhhhcccccCCChHHHHHHHhCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHccCcccchh
Confidence            4665555555555555554443      44667777775432  44555555555689999999999977   4578888


Q ss_pred             HHHHHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhcC-chhhhhhhhcccccCCCcchhHHHHHHHHHhccCCchhcHH
Q 012958          234 KAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYK-PAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSS  312 (452)
Q Consensus       234 ~aqrF~~~VLLprvredI~e~KkLn~hly~ALkKalyK-P~AFfkGil~PL~~s~~CTlrEA~IigSVl~K~SiPvlHsa  312 (452)
                      .|-.|....+||+|+.-   +..-..+|..|+.-..-+ |.++..|+++||...+.-..-.+-+|..++++-+++..|-.
T Consensus        87 ~a~~l~~sl~LpkilsL---~~~ASR~L~sal~~f~k~~p~~~~~all~PlL~~~~~g~~Q~eLl~rlvk~~~l~p~~~~  163 (263)
T PF11510_consen   87 NATVLLRSLFLPKILSL---EEPASRLLVSALTSFCKKYPRPVCEALLVPLLQAPGLGPPQCELLCRLVKKECLEPDHRL  163 (263)
T ss_dssp             HHHHHHHHHHHHHHHH----SS---HHHHHHHHHHHHHSHHHHHHHHHHHHHHSTT--HHHHHHHHHHHH-TTS-HHHHH
T ss_pred             hHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHH
Confidence            89999999999999987   556778888888766655 99999999999887665667789999999988899999999


Q ss_pred             HHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012958          313 VALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI  392 (452)
Q Consensus       313 aAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~  392 (452)
                      ..+-.+.+.+|+-.+..++..+|++|-.|+-..++-++.-+..-...- .=-+.+-+-+|+|+..|...|++.||..|-.
T Consensus       164 l~l~~~L~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~a~~~-skSlkFakLlLtvltKy~~~it~~~~~~L~~  242 (263)
T PF11510_consen  164 LLLRQILELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQAPQF-SKSLKFAKLLLTVLTKYQSQITEAHKLSLAE  242 (263)
T ss_dssp             HHHHHHHHS---HHHHHHHHHHHTT-----HHHHHHHHHHHH---------SHHHHHHHHHHHHHTGGG--HHHHHHHHH
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhh-hcchHHHHHHHHHHHHcchhccHHHHHHHHH
Confidence            888899999999999999999999999999999998888775432221 1146799999999999999999999998988


Q ss_pred             HHHhC
Q 012958          393 LLKKQ  397 (452)
Q Consensus       393 Ll~~~  397 (452)
                      .+...
T Consensus       243 ~l~~n  247 (263)
T PF11510_consen  243 ALELN  247 (263)
T ss_dssp             HH-SS
T ss_pred             HHHhc
Confidence            87543

In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.

>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain

Probab=98.10  E-value=0.00022  Score=70.71  Aligned_cols=226  Identities=15%  Similarity=0.151  Sum_probs=173.7

Q ss_pred             CCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHH-----HHHhhcCCCCCchhHHHHhHHHhhcCC---ChHHHH
Q 012958          165 KLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWE-----QVLYLTEPEKWTPNAMFQATRIFSSNL---NAKKAE  236 (452)
Q Consensus       165 ~l~pkVvevY~~vG~~Ls~YrSGKLPKafKiiP~l~nWE-----eiL~lT~P~~WSp~A~~~aTriF~Snl---~~~~aq  236 (452)
                      .+++.+.++-..+-++|..|..+. |-++-++=.+.-|.     -+...-+.++=+...+....+.|.+..   +...+-
T Consensus         2 e~~~~i~~~~~~ikeLl~~~~~~~-~~~~~~L~~l~~~~~~~~~~lc~~L~~~~~~d~~~~~Lcs~lL~~~~~~s~~~~~   80 (254)
T cd07439           2 ELPSVIQEVLEDIKELLLQEGEWL-PSSPDELQFLHSCSPSQMEVLCSQLQLSSLSDQTLLLLCSSLLPLSPDLSLANAV   80 (254)
T ss_pred             cchHHHHHHHHHHHHHHHhhccCc-CChHHHHHHHccCCHHHHHHHHHHhccCCcccHHHHHHHHHHhccCCccCcccHH
Confidence            367777888888888888887765 55544444444442     233344444455556666677777763   777899


Q ss_pred             HHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhc-CchhhhhhhhcccccCCCcchhHHHHHHHHHhccCCchhcHHHHH
Q 012958          237 RFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLY-KPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVAL  315 (452)
Q Consensus       237 rF~~~VLLprvredI~e~KkLn~hly~ALkKaly-KP~AFfkGil~PL~~s~~CTlrEA~IigSVl~K~SiPvlHsaaAL  315 (452)
                      .|...++||+++.-=   ..-..+|+-|+.--.- .|.+|..++++||.+.+.-+.-.+-+|..++..+- ++.|....+
T Consensus        81 ~~~~~l~LpKl~~l~---~~aSR~L~~al~~f~~r~~~~~ceall~PLl~~~~~~~~q~ell~rlike~~-~~~~~~l~~  156 (254)
T cd07439          81 VFTRHLLLPKLLSLN---ESASRALVAALASFAKRYPRPFCEALLRPLLQCPHPGPFQAELLCRLVKECF-EPDAVLLLL  156 (254)
T ss_pred             HHHHHHHhhhhhccC---cchhHHHHHHHHHHHHhCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc-cHHHHHHHH
Confidence            999999999998632   4445778887765544 49999999999999876557777888999998887 778888888


Q ss_pred             HHHhccc---CCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012958          316 LKLAEME---YCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI  392 (452)
Q Consensus       316 ~kl~~~~---~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~  392 (452)
                      .++..-+   |+-.+-..+..+|+++-.|.-..++.+|.....-...-.. -+.+-+-+|.|+..|...++..++..|..
T Consensus       157 ~q~L~~~~~~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~~sk-SlkFa~lll~~itky~~~~~~~~~~~L~~  235 (254)
T cd07439         157 HQILISPNLVWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEAFSK-SLKFAKLLLAVITKYGPQMSPAHKQSLSE  235 (254)
T ss_pred             HHHHccccccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHccHhhcHHHHHHHHH
Confidence            8887666   9999999999999999999999999999988665543221 45788999999999999999999999998


Q ss_pred             HHHh
Q 012958          393 LLKK  396 (452)
Q Consensus       393 Ll~~  396 (452)
                      .+..
T Consensus       236 ~~~~  239 (254)
T cd07439         236 ALER  239 (254)
T ss_pred             HHHh
Confidence            8753

Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.

>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2

Probab=81.28  E-value=14  Score=30.74  Aligned_cols=75  Identities=21%  Similarity=0.290  Sum_probs=57.7

Q ss_pred             HHHHHHhccc--CCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHH
Q 012958          313 VALLKLAEME--YCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDL  390 (452)
Q Consensus       313 aAL~kl~~~~--~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L  390 (452)
                      +-|.++|..+  ++-.---.++.++...|.|+-...+.+..+|.....+..        .+-.|++..+..++.++|..+
T Consensus         4 ~Ll~~vA~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~r~~~   75 (104)
T cd07313           4 ALLVEVARADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAP--------DLYEFTSLIKEHFDYEERLEL   75 (104)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHhCCHHHHHHH
Confidence            3445565554  555666678889999999999999999999988776554        245788888888899999998


Q ss_pred             HHHHH
Q 012958          391 RILLK  395 (452)
Q Consensus       391 ~~Ll~  395 (452)
                      ++.+-
T Consensus        76 l~~L~   80 (104)
T cd07313          76 VEALW   80 (104)
T ss_pred             HHHHH
Confidence            87763

This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	452
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 70/474 (14%), Positives = 148/474 (31%), Gaps = 103/474 (21%)

Query: 38  HHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRV--EEDE 95
           HH   D             E   Q K++L   E+  A    F   + +   + +  +E+ 
Sbjct: 3   HHHHMDFETG---------EHQYQYKDILSVFED--AFVDNFDCKDVQDMPKSILSKEEI 51

Query: 96  DDI----DD-------FGGFNETQSQ-FGNYEEEIDEDD-ERLLEAFLSKDAGPQVTLAD 142
           D I    D        F      Q +    + EE+   + + L+    ++   P +    
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 143 LIIKKIK-ENDANIASGE--TRP---------LPKL-DESFINLY--KGVGEFLSKYT-A 186
            I ++ +  ND  + +    +R          L +L     + +    G G    K   A
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTWVA 167

Query: 187 GKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPR 246
             +  ++K     +M  ++ +L      +P  + +  +     ++     R      +  
Sbjct: 168 LDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 247 IRDDIRKNKKLHFALYQALKKSL------YKP---AAFNKGILFPLCKSGTCNL---REA 294
               I+   +      +  +  L             AFN       CK     L   R  
Sbjct: 226 RIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLS-----CKI----LLTTRFK 275

Query: 295 VIIGSVIEKIS--IPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVD----- 347
            +   +    +  I + H S+ L    E++     S  +K L  +   LP  V+      
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTP-DEVK-----SLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 348 -AIVAHFMRFLEDTRVMPVIW----HQSLLAFVQRYKNELQKEDKDDLRILLKK----QK 398
            +I+A  +R           W    H +        ++ L   +  + R +  +      
Sbjct: 330 LSIIAESIR------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 399 HKLVTPEIIREL--DSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPME 450
              +   ++  +  D  +        +V+  +  S++ K  +E    IP + +E
Sbjct: 384 SAHIPTILLSLIWFDVIK---SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 81/547 (14%), Positives = 144/547 (26%), Gaps = 189/547 (34%)

Query: 5   QKRERFQN-PQPFLPSNDDDKSVASSKKRSKAAKHHQKQDK--------MISSGISSKIL 55
           ++R+R  N  Q F   N     V+  +   K  +   +           ++ SG      
Sbjct: 114 EQRDRLYNDNQVFAKYN-----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG------ 162

Query: 56  KEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDF--------GGFNET 107
           K  +    +V    +     +    F     + +     E  ++            +   
Sbjct: 163 KTWVA--LDVCLSYK----VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 108 QSQFGNYEEEIDEDDERLLEAFLSKDAGPQ--VTLADL----IIK------KI-----KE 150
                N +  I      L     SK       + L ++             KI      +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 151 NDANIASGETRPLPKLDESFINLYKGVG-EFLSKYT---AGKMPK-AFKHIP-------- 197
              +  S  T     LD   + L        L KY       +P+      P        
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 198 ----STQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKA----ERFYKLVLLPR--- 246
                   W+   ++   +          T I  S+LN  +     + F +L + P    
Sbjct: 336 SIRDGLATWDNWKHVNCDKL---------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 247 -------------IRDD-------------IRKNKK-----LHFALYQALKKSLYKPAAF 275
                        I+ D             + K  K     +  ++Y  LK  L    A 
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEYAL 445

Query: 276 NKGIL----FPLCKSGTCNLREAVIIGSVIEKISIPML----------HSSVALLKLAEM 321
           ++ I+     P                   + +  P L          H       L  +
Sbjct: 446 HRSIVDHYNIPKTFDS--------------DDLIPPYLDQYFYSHIGHH-------LKNI 484

Query: 322 EYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDT-RVMPVIWHQS-----LLAFV 375
           E+    + F  + L+                  RFLE   R     W+ S      L  +
Sbjct: 485 EHPERMTLFRMVFLD-----------------FRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 376 QRYKNELQKEDKDDLRILLKKQKHKLVTPE--IIRELDSSRNRGEKEGDLVSISYPMSVI 433
           + YK  +   D    R L+      L   E  +I           K  DL+ I+  +   
Sbjct: 528 KFYKPYICDNDPKYER-LVNAILDFLPKIEENLIC---------SKYTDLLRIA--LMAE 575

Query: 434 NKTIEED 440
           ++ I E+
Sbjct: 576 DEAIFEE 582

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	452
2ilr_A	264	Protein FACE, fanconi anemia group E protein; anti	98.62

>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}

Probab=98.62  E-value=2.1e-06  Score=83.94  Aligned_cols=180  Identities=12%  Similarity=0.167  Sum_probs=152.9

Q ss_pred             CCchhHHHHhHHHhhc---CCChHHHHHHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhcC-chhhhhhhhcccccCCC
Q 012958          213 KWTPNAMFQATRIFSS---NLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYK-PAAFNKGILFPLCKSGT  288 (452)
Q Consensus       213 ~WSp~A~~~aTriF~S---nl~~~~aqrF~~~VLLprvredI~e~KkLn~hly~ALkKalyK-P~AFfkGil~PL~~s~~  288 (452)
                      +-|..++++....+.+   -++-..|..|....+||++++-   +..-.-+|..|+.--.-| |.||..|+++||+..+.
T Consensus        63 ~lsd~~l~~lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L---~~~ASR~L~sal~~f~k~~p~a~~~all~PLL~~~~  139 (264)
T 2ilr_A           63 QLSDLGLLRLCTWLLALSPDLSLSNATVLTRSLFLGRILSL---TSSASRLLTTALTSFAAKYTYPVCSALLDPVLQAPG  139 (264)
T ss_dssp             GCCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHC---SSCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHSTT
T ss_pred             cCCHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHhc---cCcchhHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence            6788899998886666   4567889999999999999987   677788888888766544 99999999999998776


Q ss_pred             cchhHHHHHHHHHhccCCchhcHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHH
Q 012958          289 CNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWH  368 (452)
Q Consensus       289 CTlrEA~IigSVl~K~SiPvlHsaaAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWH  368 (452)
                      -..-.+-+|..+|.--++++.|.+..+-.+-+.+|+-.+...+..+|++|-.|.-..++.+|..+..-...-.. -..+-
T Consensus       140 ~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~sk-SlkFa  218 (264)
T 2ilr_A          140 TGPAQTELLCCLVKMESLEPDAQVLMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATT-SMAYA  218 (264)
T ss_dssp             CCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CC-SHHHH
T ss_pred             CCHHHHHHHHHHHHhccCCHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhc-ccHHH
Confidence            67788889999998677999999999999999999999999999999999999999999999988754432221 46799


Q ss_pred             HHHHHHHHHhhhhcCHHHHHHHHHHHHh
Q 012958          369 QSLLAFVQRYKNELQKEDKDDLRILLKK  396 (452)
Q Consensus       369 QsLL~FvqrYk~dls~eqk~~L~~Ll~~  396 (452)
                      +-+|+|+..|...|++.|+..|...+..
T Consensus       219 kLll~~itky~~~i~~~~~~~L~~~l~~  246 (264)
T 2ilr_A          219 KLMLTVMTKYQANITETQRLGLAMALEP  246 (264)
T ss_dssp             HHHHHHHHHTGGGCCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhHHhcCHHHHHHHHHHHHh
Confidence            9999999999999999999888887743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00