Query 012959
Match_columns 452
No_of_seqs 137 out of 221
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 08:05:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3871 Cell adhesion complex 100.0 6E-157 1E-161 1169.7 32.3 426 6-450 10-448 (449)
2 PF05291 Bystin: Bystin; Inte 100.0 2E-133 5E-138 984.6 31.0 295 129-423 1-300 (301)
3 PF11510 FA_FANCE: Fanconi Ana 98.7 4.9E-07 1.1E-11 89.7 17.6 229 165-397 7-247 (263)
4 cd07439 FANCE_c-term Fanconi a 98.1 0.00022 4.8E-09 70.7 17.8 226 165-396 2-239 (254)
5 cd07313 terB_like_2 tellurium 81.3 14 0.0003 30.7 8.7 75 313-395 4-80 (104)
6 PF04931 DNA_pol_phi: DNA poly 74.3 1.7 3.7E-05 49.1 1.8 16 164-179 735-750 (784)
7 KOG1832 HIV-1 Vpr-binding prot 71.4 4.1 8.8E-05 47.8 3.8 18 116-133 1487-1504(1516)
8 KOG2153 Protein involved in th 69.7 31 0.00067 39.3 10.0 115 280-394 301-432 (704)
9 COG4103 Uncharacterized protei 66.7 40 0.00086 31.9 8.6 99 273-394 8-108 (148)
10 PF04147 Nop14: Nop14-like fam 63.2 48 0.001 38.5 10.3 139 173-321 427-594 (840)
11 PF07240 Turandot: Stress-indu 62.3 8.6 0.00019 33.1 3.2 30 368-397 12-43 (85)
12 PF10446 DUF2457: Protein of u 60.0 8 0.00017 42.0 3.2 23 395-417 420-445 (458)
13 COG3189 Uncharacterized conser 51.7 21 0.00046 32.5 4.0 38 363-404 58-95 (117)
14 KOG2147 Nucleolar protein invo 49.1 1.6E+02 0.0035 34.4 11.1 84 217-310 467-553 (823)
15 PF10446 DUF2457: Protein of u 48.2 15 0.00033 39.9 3.0 29 170-200 206-234 (458)
16 cd00159 RhoGAP RhoGAP: GTPase- 41.1 2.4E+02 0.0052 24.7 9.0 106 177-308 31-149 (169)
17 PF11116 DUF2624: Protein of u 38.3 75 0.0016 27.5 5.1 45 369-413 18-62 (85)
18 PRK13434 F0F1 ATP synthase sub 32.7 2.5E+02 0.0054 26.3 8.1 84 306-401 50-134 (184)
19 PF06524 NOA36: NOA36 protein; 31.6 26 0.00056 36.2 1.5 21 46-66 223-243 (314)
20 PRK13430 F0F1 ATP synthase sub 28.7 2.7E+02 0.0058 28.1 8.1 87 305-402 145-231 (271)
21 KOG1617 CDP-alcohol phosphatid 26.6 59 0.0013 32.9 3.0 40 173-215 163-202 (243)
22 KOG4557 Origin recognition com 26.2 77 0.0017 32.1 3.7 56 170-237 105-172 (262)
23 PF09371 Tex_N: Tex-like prote 23.4 1.7E+02 0.0037 28.4 5.4 67 336-417 2-89 (193)
24 PF05099 TerB: Tellurite resis 22.4 4.1E+02 0.0089 22.9 7.2 66 322-395 39-104 (140)
25 PF06784 UPF0240: Uncharacteri 21.6 99 0.0021 29.7 3.4 50 286-358 115-165 (179)
26 KOG0943 Predicted ubiquitin-pr 20.4 61 0.0013 40.0 2.0 40 232-273 2058-2101(3015)
No 1
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=100.00 E-value=5.5e-157 Score=1169.74 Aligned_cols=426 Identities=55% Similarity=0.855 Sum_probs=368.5
Q ss_pred hcccCCCCcCCCCCCCCCCccccccc--chhhhhh--ccccCCCCCchhhHHHHHHHHHHHHHHHhhcCCCCcccchh-h
Q 012959 6 KRERFQNPQPFLPSNDDDKSVASSKK--RSKAAKH--HQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAF-V 80 (452)
Q Consensus 6 kk~rh~pL~~qi~s~~~~~~~~~~~~--r~k~~~~--~~~~e~~vd~~~SrkIL~~Ar~Qq~E~~~e~~~~~~~~~~~-~ 80 (452)
++.+|.||.+||. +++ +++.++ |+|.+++ ..++++|||+++|+|||++||+||.|+++|+.....+..++ .
T Consensus 10 ~~~~~~pl~kdl~---a~~-va~~k~~~r~k~k~~~e~~e~d~~ida~~S~KIL~~Ak~Qq~E~~~Ee~~~~~~~s~~~~ 85 (449)
T KOG3871|consen 10 RKQRHAPLLKDLA---AGQ-VAKKKKLARSKVKKHDEANEEDGFIDAKASRKILQLAKEQQLELAEEENAESSRNSAFEA 85 (449)
T ss_pred chhccCchhhhhH---HHh-hhhhhhhhhhhhhhhhhhccccccccchhhHHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence 4567999999998 333 544544 5554444 34556899999999999999999999988776443332222 1
Q ss_pred hhhHhhhhccCCCCcccccccCCCCcccc--ccCCcccccChHHHHHHHHHhccCCCCCcChHHHHHHHHhhhhhhh---
Q 012959 81 FAEEEQSKRRVEEDEDDIDDFGGFNETQS--QFGNYEEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANI--- 155 (452)
Q Consensus 81 ~~~~~~~~~~~~dd~~~~~~~~~~~~~~~--~~~~e~~eideeDe~~l~~Fm~~~~~~~~tLADiImeKi~eke~~~--- 155 (452)
.......+++++.+++++||++|++.+++ +++.+.+|||++|++.|++|++++++..+||+|+||+||+||++..
T Consensus 86 ~~~~~~~~ee~~i~~~~eddi~D~~~~~d~~~eed~~~Eide~d~~~f~r~l~k~a~~~~tL~diIm~ki~ekead~~~~ 165 (449)
T KOG3871|consen 86 RFTTASYGEEDEIEEEDEDDIDDFEMEEDDKEEEDEIVEIDEEDAALFERFLKKSADFNYTLADIIMAKIREKEADVETE 165 (449)
T ss_pred hccccccccccccccchhcccccccccccchhhhhhhhhcCcchHHHHHHHhccccchhccHHHHHHHHHHHHHhhHHhh
Confidence 11100000111112222334444432222 1222469999999999999999999999999999999999999873
Q ss_pred -c--cCCCCCCCCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCCh
Q 012959 156 -A--SGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNA 232 (452)
Q Consensus 156 -~--~~~~~~~~~l~pkVvevY~~vG~~Ls~YrSGKLPKafKiiP~l~nWEeiL~lT~P~~WSp~A~~~aTriF~Snl~~ 232 (452)
+ +..+.+++.|||+|+++|++||.+||+||||||||||||||+|.|||+|||||+|+.|||||||||||||+|||++
T Consensus 166 ~~~~~~~e~~~~~ldpkV~e~Y~~Vg~~lskyrsGKlPKaFKiIp~l~nWediLylT~Pe~Ws~~amyqaTRiF~SnL~~ 245 (449)
T KOG3871|consen 166 QSDPDENEFPMPALDPKVIEMYEGVGSVLSKYRSGKLPKAFKIIPSLRNWEDILYLTEPEEWSPAAMYQATRIFASNLKP 245 (449)
T ss_pred hcccccccCCCCCCCHHHHHHHHHHHHHHHHhhcCCCchhhhcccccccHhHheeecCccccCHHHHHHHHHHHHhcCCH
Confidence 2 2334567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhcCchhhhhhhhcccccCCCcchhHHHHHHHHHhccCCchhcHH
Q 012959 233 KKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSS 312 (452)
Q Consensus 233 ~~aqrF~~~VLLprvredI~e~KkLn~hly~ALkKalyKP~AFfkGil~PL~~s~~CTlrEA~IigSVl~K~SiPvlHsa 312 (452)
+|||||||+|||||||+||+++||||||||+|||||||||+|||||||||||++||||||||+||||||+||||||+|||
T Consensus 246 ~~~QrFynlvLLpRvRddi~e~kkLnyhLY~AlkKaLyKPsAffkG~l~PL~esgtCtlREAvI~gSvl~K~siPvlHSs 325 (449)
T KOG3871|consen 246 KMAQRFYNLVLLPRVRDDIREYKKLNYHLYQALKKALYKPSAFFKGILFPLVESGTCTLREAVIIGSVLAKVSIPVLHSS 325 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhhHHHHHHHHHHhcCcHHHhccchhhhccCCCchHHHHHHHHHHHhhCcchhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012959 313 VALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 392 (452)
Q Consensus 313 aAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~ 392 (452)
|||++||+|+|||+||+|||+||||||||||||||+||+|||||+++.|.|||+||||||+||||||+||++|||++|++
T Consensus 326 aallrl~em~ysgatSvFir~lLdKKYalPYrvvD~~V~hFmrf~~d~R~lpVlwHqslLtf~QRYK~di~~eqkdaLle 405 (449)
T KOG3871|consen 326 AALLRLAEMDYSGATSVFIRILLDKKYALPYRVVDALVFHFMRFRTDERVLPVLWHQSLLTFAQRYKNDITQEQKDALLE 405 (449)
T ss_pred HHHHHHHhcccCCcchHHHHHHhhhhccchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHhhcCCCCCCCCccccccccccccccccccccCCCCCCCCC
Q 012959 393 LLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPME 450 (452)
Q Consensus 393 Ll~~~~H~~ItpEIrreL~~~~~R~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 450 (452)
|+|.|+|+.|||||||||+++.+||+.+.+| |++++.++|+|+
T Consensus 406 llr~~~H~~i~PEIrREL~~~~~r~~~~~~~---------------~~~~~~~~v~me 448 (449)
T KOG3871|consen 406 LLRLQGHYLIGPEIRRELLASASRDEEDPQM---------------EDRFADDDVEME 448 (449)
T ss_pred HHHhcCCCcCCHHHHHHHHhccccCccccch---------------hhcccCCCcccC
Confidence 9999999999999999999999999976644 788888999886
No 2
>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].
Probab=100.00 E-value=2.4e-133 Score=984.59 Aligned_cols=295 Identities=62% Similarity=1.049 Sum_probs=285.2
Q ss_pred HhccCCCCCcChHHHHHHHHhhhhhhhc----cCCCCCC-CCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHH
Q 012959 129 FLSKDAGPQVTLADLIIKKIKENDANIA----SGETRPL-PKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWE 203 (452)
Q Consensus 129 Fm~~~~~~~~tLADiImeKi~eke~~~~----~~~~~~~-~~l~pkVvevY~~vG~~Ls~YrSGKLPKafKiiP~l~nWE 203 (452)
||++++++++||||+||+||+|++++.. ++++.+. ..+||||++||++||.+||+||||||||||||||+|+|||
T Consensus 1 fm~~~~~~~~~Lad~I~~Ki~e~e~~~~~~~~~~~~~~~~~~l~~kVvevY~~vG~~Ls~YrSGkLPKafKiiP~l~nWE 80 (301)
T PF05291_consen 1 FMNEEAGQRRTLADIIMEKIKEKEAEQQGQQSDEEGKPEPEELDPKVVEVYTKVGELLSRYRSGKLPKAFKIIPSLPNWE 80 (301)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhccccCccCCCCCcccCCHHHHHHHHHHHHHHhhcCCCCCCcCeecccCchhHH
Confidence 8999999999999999999999998742 2223333 4899999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCchhHHHHhHHHhhcCCChHHHHHHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhcCchhhhhhhhccc
Q 012959 204 QVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPL 283 (452)
Q Consensus 204 eiL~lT~P~~WSp~A~~~aTriF~Snl~~~~aqrF~~~VLLprvredI~e~KkLn~hly~ALkKalyKP~AFfkGil~PL 283 (452)
+|||+|+|++|||||||+|||||+||||+++|||||++|||||||+||++|||||||||+|||||+|||+||||||||||
T Consensus 81 eiL~lT~P~~WSp~A~~~aTRiF~SnL~~~~aqrF~~~VLLprvredI~~~KKLn~hly~ALkKalyKP~AffkGil~PL 160 (301)
T PF05291_consen 81 EILYLTRPEKWSPHAMYEATRIFASNLNEKMAQRFYNLVLLPRVREDIAENKKLNYHLYMALKKALYKPAAFFKGILLPL 160 (301)
T ss_pred HHHHhCChhhccHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchhHHHHHHHHHhccCCchhcHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCc
Q 012959 284 CKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM 363 (452)
Q Consensus 284 ~~s~~CTlrEA~IigSVl~K~SiPvlHsaaAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~l 363 (452)
|+|||||+|||+||||||+||||||+||||||++||+|+|+|++|+|||+||+|||||||||||+||+||+||.++.++|
T Consensus 161 ~~sg~CTlrEA~Ii~svl~k~sipvlhsaaaL~kl~~~~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~~~~l 240 (301)
T PF05291_consen 161 CESGTCTLREAVIIGSVLAKVSIPVLHSAAALLKLAEMEYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRNDKRKL 240 (301)
T ss_pred hcCCCccHHHHHHHHHHHHhcCCCchhHHHHHHHHHcCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhhcCCCCCCCCcc
Q 012959 364 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDL 423 (452)
Q Consensus 364 PVlWHQsLL~FvqrYk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~~~~R~~~~~~~ 423 (452)
||+||||||+||||||+|||+|||++|++||++|+|++|||||||||.+|++||++.++|
T Consensus 241 PVlWHq~lL~F~qrYk~di~~eqk~~L~~ll~~~~H~~ItpEIrreL~~~~~r~~~~~~~ 300 (301)
T PF05291_consen 241 PVLWHQSLLVFVQRYKNDITEEQKEALLELLRKQKHPQITPEIRRELLASRSRGVEIMDM 300 (301)
T ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhcCCCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999976654
No 3
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=98.75 E-value=4.9e-07 Score=89.71 Aligned_cols=229 Identities=16% Similarity=0.224 Sum_probs=154.5
Q ss_pred CCChHHHHHHHHHHHHHhhccc------CCCCccccccCCCc--hHHHHHhhcCCCCCchhHHHHhHHHh---hcCCChH
Q 012959 165 KLDESFINLYKGVGEFLSKYTA------GKMPKAFKHIPSTQ--MWEQVLYLTEPEKWTPNAMFQATRIF---SSNLNAK 233 (452)
Q Consensus 165 ~l~pkVvevY~~vG~~Ls~YrS------GKLPKafKiiP~l~--nWEeiL~lT~P~~WSp~A~~~aTriF---~Snl~~~ 233 (452)
+||..+....-++-++|..-.. |..|..++++=..+ .-|-+-..-+=.+||..++++..+.+ ..+++-.
T Consensus 7 ~lp~~~~~~~~~lk~ll~~~~e~~~~~~~~~~~~lq~L~~csp~q~e~lc~~L~l~~lsd~~l~~lc~~ll~Ls~dls~~ 86 (263)
T PF11510_consen 7 ELPKHIQDQVPRLKELLETESEGLEGLEDAPPSELQFLNECSPSQVEMLCSQLQLPQLSDDGLLQLCSSLLALSPDLSHS 86 (263)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-----------HHHHGGGG--HHHHHHHHHHHTGGG--HHHHHHHHHHHHH-SS---HH
T ss_pred hCcHHHHHHHHHHHHHHHHhhhhcccccCCChHHHHHHHhCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHccCcccchh
Confidence 4665555555555555554443 44667777775432 44555555555689999999999977 4578888
Q ss_pred HHHHHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhcC-chhhhhhhhcccccCCCcchhHHHHHHHHHhccCCchhcHH
Q 012959 234 KAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYK-PAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSS 312 (452)
Q Consensus 234 ~aqrF~~~VLLprvredI~e~KkLn~hly~ALkKalyK-P~AFfkGil~PL~~s~~CTlrEA~IigSVl~K~SiPvlHsa 312 (452)
.|-.|....+||+|+.- +..-..+|..|+.-..-+ |.++..|+++||...+.-..-.+-+|..++++-+++..|-.
T Consensus 87 ~a~~l~~sl~LpkilsL---~~~ASR~L~sal~~f~k~~p~~~~~all~PlL~~~~~g~~Q~eLl~rlvk~~~l~p~~~~ 163 (263)
T PF11510_consen 87 NATVLLRSLFLPKILSL---EEPASRLLVSALTSFCKKYPRPVCEALLVPLLQAPGLGPPQCELLCRLVKKECLEPDHRL 163 (263)
T ss_dssp HHHHHHHHHHHHHHHH----SS---HHHHHHHHHHHHHSHHHHHHHHHHHHHHSTT--HHHHHHHHHHHH-TTS-HHHHH
T ss_pred hHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHH
Confidence 89999999999999987 556778888888766655 99999999999887665667789999999988899999999
Q ss_pred HHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012959 313 VALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 392 (452)
Q Consensus 313 aAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~ 392 (452)
..+-.+.+.+|+-.+..++..+|++|-.|+-..++-++.-+..-...- .=-+.+-+-+|+|+..|...|++.||..|-.
T Consensus 164 l~l~~~L~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~a~~~-skSlkFakLlLtvltKy~~~it~~~~~~L~~ 242 (263)
T PF11510_consen 164 LLLRQILELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQAPQF-SKSLKFAKLLLTVLTKYQSQITEAHKLSLAE 242 (263)
T ss_dssp HHHHHHHHS---HHHHHHHHHHHTT-----HHHHHHHHHHHH---------SHHHHHHHHHHHHHTGGG--HHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhh-hcchHHHHHHHHHHHHcchhccHHHHHHHHH
Confidence 888899999999999999999999999999999998888775432221 1146799999999999999999999998988
Q ss_pred HHHhC
Q 012959 393 LLKKQ 397 (452)
Q Consensus 393 Ll~~~ 397 (452)
.+...
T Consensus 243 ~l~~n 247 (263)
T PF11510_consen 243 ALELN 247 (263)
T ss_dssp HH-SS
T ss_pred HHHhc
Confidence 87543
No 4
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=98.10 E-value=0.00022 Score=70.71 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=173.7
Q ss_pred CCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHH-----HHHhhcCCCCCchhHHHHhHHHhhcCC---ChHHHH
Q 012959 165 KLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWE-----QVLYLTEPEKWTPNAMFQATRIFSSNL---NAKKAE 236 (452)
Q Consensus 165 ~l~pkVvevY~~vG~~Ls~YrSGKLPKafKiiP~l~nWE-----eiL~lT~P~~WSp~A~~~aTriF~Snl---~~~~aq 236 (452)
.+++.+.++-..+-++|..|..+. |-++-++=.+.-|. -+...-+.++=+...+....+.|.+.. +...+-
T Consensus 2 e~~~~i~~~~~~ikeLl~~~~~~~-~~~~~~L~~l~~~~~~~~~~lc~~L~~~~~~d~~~~~Lcs~lL~~~~~~s~~~~~ 80 (254)
T cd07439 2 ELPSVIQEVLEDIKELLLQEGEWL-PSSPDELQFLHSCSPSQMEVLCSQLQLSSLSDQTLLLLCSSLLPLSPDLSLANAV 80 (254)
T ss_pred cchHHHHHHHHHHHHHHHhhccCc-CChHHHHHHHccCCHHHHHHHHHHhccCCcccHHHHHHHHHHhccCCccCcccHH
Confidence 367777888888888888887765 55544444444442 233344444455556666677777763 777899
Q ss_pred HHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhc-CchhhhhhhhcccccCCCcchhHHHHHHHHHhccCCchhcHHHHH
Q 012959 237 RFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLY-KPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVAL 315 (452)
Q Consensus 237 rF~~~VLLprvredI~e~KkLn~hly~ALkKaly-KP~AFfkGil~PL~~s~~CTlrEA~IigSVl~K~SiPvlHsaaAL 315 (452)
.|...++||+++.-= ..-..+|+-|+.--.- .|.+|..++++||.+.+.-+.-.+-+|..++..+- ++.|....+
T Consensus 81 ~~~~~l~LpKl~~l~---~~aSR~L~~al~~f~~r~~~~~ceall~PLl~~~~~~~~q~ell~rlike~~-~~~~~~l~~ 156 (254)
T cd07439 81 VFTRHLLLPKLLSLN---ESASRALVAALASFAKRYPRPFCEALLRPLLQCPHPGPFQAELLCRLVKECF-EPDAVLLLL 156 (254)
T ss_pred HHHHHHHhhhhhccC---cchhHHHHHHHHHHHHhCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc-cHHHHHHHH
Confidence 999999999998632 4445778887765544 49999999999999876557777888999998887 778888888
Q ss_pred HHHhccc---CCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012959 316 LKLAEME---YCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 392 (452)
Q Consensus 316 ~kl~~~~---~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~ 392 (452)
.++..-+ |+-.+-..+..+|+++-.|.-..++.+|.....-...-.. -+.+-+-+|.|+..|...++..++..|..
T Consensus 157 ~q~L~~~~~~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~~sk-SlkFa~lll~~itky~~~~~~~~~~~L~~ 235 (254)
T cd07439 157 HQILISPNLVWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEAFSK-SLKFAKLLLAVITKYGPQMSPAHKQSLSE 235 (254)
T ss_pred HHHHccccccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHccHhhcHHHHHHHHH
Confidence 8887666 9999999999999999999999999999988665543221 45788999999999999999999999998
Q ss_pred HHHh
Q 012959 393 LLKK 396 (452)
Q Consensus 393 Ll~~ 396 (452)
.+..
T Consensus 236 ~~~~ 239 (254)
T cd07439 236 ALER 239 (254)
T ss_pred HHHh
Confidence 8753
No 5
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=81.28 E-value=14 Score=30.74 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=57.7
Q ss_pred HHHHHHhccc--CCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHH
Q 012959 313 VALLKLAEME--YCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDL 390 (452)
Q Consensus 313 aAL~kl~~~~--~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L 390 (452)
+-|.++|..+ ++-.---.++.++...|.|+-...+.+..+|.....+.. .+-.|++..+..++.++|..+
T Consensus 4 ~Ll~~vA~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~r~~~ 75 (104)
T cd07313 4 ALLVEVARADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAP--------DLYEFTSLIKEHFDYEERLEL 75 (104)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHhCCHHHHHHH
Confidence 3445565554 555666678889999999999999999999988776554 245788888888899999998
Q ss_pred HHHHH
Q 012959 391 RILLK 395 (452)
Q Consensus 391 ~~Ll~ 395 (452)
++.+-
T Consensus 76 l~~L~ 80 (104)
T cd07313 76 VEALW 80 (104)
T ss_pred HHHHH
Confidence 87763
No 6
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=74.28 E-value=1.7 Score=49.15 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=11.0
Q ss_pred CCCChHHHHHHHHHHH
Q 012959 164 PKLDESFINLYKGVGE 179 (452)
Q Consensus 164 ~~l~pkVvevY~~vG~ 179 (452)
..||+.+.++|+.-..
T Consensus 735 ~~lD~~La~~Fk~r~~ 750 (784)
T PF04931_consen 735 MALDEQLAAIFKERKE 750 (784)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4678888888875533
No 7
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.43 E-value=4.1 Score=47.80 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=14.9
Q ss_pred cccChHHHHHHHHHhccC
Q 012959 116 EEIDEDDERLLEAFLSKD 133 (452)
Q Consensus 116 ~eideeDe~~l~~Fm~~~ 133 (452)
...|+||+..++-||+..
T Consensus 1487 ~D~Dee~~~~~~d~~ss~ 1504 (1516)
T KOG1832|consen 1487 EDEDEEDDGEMQDFMSSG 1504 (1516)
T ss_pred cccchhhhhhhhcccCCC
Confidence 478899999999999873
No 8
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.71 E-value=31 Score=39.31 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=75.6
Q ss_pred hcccccCCCcchhHHH--------HHHHHHhccCCch----hcHHHHHHHHhcccCCchHHHHHHHHHHhhh-cCcHHHH
Q 012959 280 LFPLCKSGTCNLREAV--------IIGSVIEKISIPM----LHSSVALLKLAEMEYCGTTSYFIKLLLEKKY-GLPYRVV 346 (452)
Q Consensus 280 l~PL~~s~~CTlrEA~--------IigSVl~K~SiPv----lHsaaAL~kl~~~~~sg~~s~firvLldKKY-aLPy~vi 346 (452)
++=+|-.--|+|-+|+ |+..|+...+-|- .-+.+++-.+++=|--|..|+++-.+++.-| ..=|.|+
T Consensus 301 l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~ 380 (704)
T KOG2153|consen 301 LAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVL 380 (704)
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccch
Confidence 4445544457888887 6777777777662 2233556666777777888887766666543 3446677
Q ss_pred HHHHHHHHhhhccCCCcchHH----HHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 012959 347 DAIVAHFMRFLEDTRVMPVIW----HQSLLAFVQRYKNELQKEDKDDLRILL 394 (452)
Q Consensus 347 DalV~hFlrF~~~~~~lPVlW----HQsLL~FvqrYk~dls~eqk~~L~~Ll 394 (452)
-.+.+-|+.-+-+....+--| .|...-|-+.=+..++.-||.+=++..
T Consensus 381 ~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ 432 (704)
T KOG2153|consen 381 PDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERN 432 (704)
T ss_pred hhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence 788888877665544444443 467777777777778888888777644
No 9
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.74 E-value=40 Score=31.87 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=72.7
Q ss_pred hhhhhhhhcccccCCCcchhHHHHHHHHHhccCCchhcHHHHHHHHhcccC--CchHHHHHHHHHHhhhcCcHHHHHHHH
Q 012959 273 AAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEY--CGTTSYFIKLLLEKKYGLPYRVVDAIV 350 (452)
Q Consensus 273 ~AFfkGil~PL~~s~~CTlrEA~IigSVl~K~SiPvlHsaaAL~kl~~~~~--sg~~s~firvLldKKYaLPy~viDalV 350 (452)
-+||++|.=++..... .-=|.+-+++-|+.+++-+- +.+--.=+|.|+.-.|.++-.-+|+|+
T Consensus 8 ~sfl~~l~~~~~~~~~---------------adDP~lAa~~Llf~Vm~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali 72 (148)
T COG4103 8 LSFLKQLPGGLDGDNS---------------ADDPRLAAAALLFHVMEADGTVSESEREAFRAILKENFGIDGEELDALI 72 (148)
T ss_pred HHHHHhccCccccCcC---------------CCCHHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4677877655542211 23466655555555555553 334446678899999999999999999
Q ss_pred HHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 012959 351 AHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILL 394 (452)
Q Consensus 351 ~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~Ll 394 (452)
.|--.|..+.- .|-.|.-.-+..|+++||-.|..++
T Consensus 73 ~~~e~~~~Ea~--------d~y~fts~l~r~Ld~e~R~eli~~m 108 (148)
T COG4103 73 EAGEEAGYEAI--------DLYSFTSVLKRHLDEEQRLELIGLM 108 (148)
T ss_pred HHHHHhhHHHH--------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99988887654 4678999999999999999998877
No 10
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=63.24 E-value=48 Score=38.46 Aligned_cols=139 Identities=15% Similarity=0.226 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhcccCCCCcccccc-----CCCc-------------hHHHHHhhcCCC-CCchhHHHHhHHHhh--cCCC
Q 012959 173 LYKGVGEFLSKYTAGKMPKAFKHI-----PSTQ-------------MWEQVLYLTEPE-KWTPNAMFQATRIFS--SNLN 231 (452)
Q Consensus 173 vY~~vG~~Ls~YrSGKLPKafKii-----P~l~-------------nWEeiL~lT~P~-~WSp~A~~~aTriF~--Snl~ 231 (452)
-|..+-.+|+.|....+|.+++-| |+|. -|.-|+++.... .=....+-..+++.. +.+.
T Consensus 427 s~eel~~lL~~~~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~vLlq~i~~la~~~~~~~~~~ld~L~~~L~~Laq~~ 506 (840)
T PF04147_consen 427 SHEELLELLDGYSPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFGVLLQHILYLASQDSPPPFEVLDSLIPHLYDLAQKY 506 (840)
T ss_pred CHHHHHHHHhcCCHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777776655 5541 367777787766 333444555555332 2223
Q ss_pred hHHHHHHHHHhhhHHHHHhhhhh--------cccchHHHHHHHHhhcCchhhhhhhhcccccCCCcchhHHHHHHHHHhc
Q 012959 232 AKKAERFYKLVLLPRIRDDIRKN--------KKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEK 303 (452)
Q Consensus 232 ~~~aqrF~~~VLLprvredI~e~--------KkLn~hly~ALkKalyKP~AFfkGil~PL~~s~~CTlrEA~IigSVl~K 303 (452)
+..+-.+|..+|.-.-..--... =.+.-=+|-.|.-.+|=-.-|+.-++-|.. ++||.+|.+
T Consensus 507 p~~~a~~~r~~L~~~~~~~~~~~l~~~~~~~P~l~~Lvllklv~~lFPTSD~~HpVVTPal----------llm~~~L~q 576 (840)
T PF04147_consen 507 PEEAAECFREVLKEMQKRFRKGALKPKERSWPSLSDLVLLKLVGTLFPTSDFRHPVVTPAL----------LLMSEYLSQ 576 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCChhHHHHHHHHHHhcCcccccCcchhHHH----------HHHHHHHhc
Confidence 34444444444433221111100 012333566666666666666665555532 457888888
Q ss_pred cCCchhcHHHHHHHHhcc
Q 012959 304 ISIPMLHSSVALLKLAEM 321 (452)
Q Consensus 304 ~SiPvlHsaaAL~kl~~~ 321 (452)
|.|-.++-.+.=+-||.+
T Consensus 577 ~~v~s~~di~~GlfL~~l 594 (840)
T PF04147_consen 577 CRVRSLRDIASGLFLCTL 594 (840)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 877777666555555554
No 11
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=62.30 E-value=8.6 Score=33.12 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhh--cCHHHHHHHHHHHHhC
Q 012959 368 HQSLLAFVQRYKNE--LQKEDKDDLRILLKKQ 397 (452)
Q Consensus 368 HQsLL~FvqrYk~d--ls~eqk~~L~~Ll~~~ 397 (452)
-|.|+.|..||... |+++++..+-+.++.+
T Consensus 12 i~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y 43 (85)
T PF07240_consen 12 IQELIAFYEKYSPRLPLTPQDRQRIDRFIRRY 43 (85)
T ss_pred HHHHHHHHHHcCccCCCCHHHHHHHHHHHHHH
Confidence 47899999999999 9999999999999765
No 12
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=60.04 E-value=8 Score=41.97 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=17.0
Q ss_pred HhCCCCCCCHHHHHHHh---hcCCCC
Q 012959 395 KKQKHKLVTPEIIRELD---SSRNRG 417 (452)
Q Consensus 395 ~~~~H~~ItpEIrreL~---~~~~R~ 417 (452)
...+-+.-+.|=+|||- ++++|.
T Consensus 420 errp~PG~GAERMrELGL~mA~r~~a 445 (458)
T PF10446_consen 420 ERRPAPGKGAERMRELGLEMAGRFRA 445 (458)
T ss_pred ccCCCCCchHHHHHHHHHHHhhhhhh
Confidence 34778888999999974 665554
No 13
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=51.70 E-value=21 Score=32.49 Aligned_cols=38 Identities=34% Similarity=0.553 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCH
Q 012959 363 MPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTP 404 (452)
Q Consensus 363 lPVlWHQsLL~FvqrYk~dls~eqk~~L~~Ll~~~~H~~Itp 404 (452)
-|..|+ .|.+||...|+...-.+|.+|+..-.|..+|.
T Consensus 58 dp~~w~----~F~~rY~~EL~~~~~~~l~~L~~~~~~~~lTL 95 (117)
T COG3189 58 DPKKWD----EFRERYRAELNAQDAQALEDLLDIASHGPLTL 95 (117)
T ss_pred CHHHHH----HHHHHHHHHHhcccHHHHHHHHHHHcCCCeEE
Confidence 366787 69999999997766658888887766666653
No 14
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=49.13 E-value=1.6e+02 Score=34.38 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=43.6
Q ss_pred hHHHHhHHHhhcCCChHHHHHHHHHhhhHHHHHhhhhhcccchHHHHHHHHhhcCchhhhh--hhhcccccCCCcchhHH
Q 012959 217 NAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNK--GILFPLCKSGTCNLREA 294 (452)
Q Consensus 217 ~A~~~aTriF~Snl~~~~aqrF~~~VLLprvredI~e~KkLn~hly~ALkKalyKP~AFfk--Gil~PL~~s~~CTlrEA 294 (452)
..+|..+.+|...++ .=.+.+||.++++.-+..|--|.-.|-.|.-.+ ||+ |+|||-.....--..=|
T Consensus 467 ~~L~~l~q~~pe~~~-----~~~~~~ll~~~~e~~e~~k~k~~~~~psl~~Lv-----~f~l~g~LFptSDf~HpVVtPa 536 (823)
T KOG2147|consen 467 AHLISLAQMFPEIAS-----IVRCVRLLERIHEKGEQIKQKNHPVSPSLDDLV-----FFKLTGLLFPTSDFRHPVVTPA 536 (823)
T ss_pred HHHHHHHHhhhHHhh-----hhHHHHHHHHHHHHHHHhcccCccCCCCcchhh-----hhhhhcccccccccccccccHH
Confidence 356666666655322 223345888888888777755544444444433 344 35777654443222333
Q ss_pred HH-HHHHHhccCCchhc
Q 012959 295 VI-IGSVIEKISIPMLH 310 (452)
Q Consensus 295 ~I-igSVl~K~SiPvlH 310 (452)
+| ++-+|.+|.|-.+.
T Consensus 537 lllm~e~L~~~p~~Sl~ 553 (823)
T KOG2147|consen 537 LLLMSEALSQSPIASLQ 553 (823)
T ss_pred HHHHHHHHHhCcchhHH
Confidence 33 33355555554443
No 15
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=48.22 E-value=15 Score=39.90 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccccCCCc
Q 012959 170 FINLYKGVGEFLSKYTAGKMPKAFKHIPSTQ 200 (452)
Q Consensus 170 VvevY~~vG~~Ls~YrSGKLPKafKiiP~l~ 200 (452)
+-.+|--+-.-=.+-|.=.+|. -|=|+++
T Consensus 206 LE~AY~Scle~Rr~~K~~~iPQ--DIDPSFP 234 (458)
T PF10446_consen 206 LEAAYISCLEARRREKHIPIPQ--DIDPSFP 234 (458)
T ss_pred HHHHHHHHHHHHHHcCCCCCCC--CCCCCCC
Confidence 3345654444333333333333 3445554
No 16
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=41.09 E-value=2.4e+02 Score=24.66 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=65.3
Q ss_pred HHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCCh-----HHHHHHHHHh-------hh
Q 012959 177 VGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNA-----KKAERFYKLV-------LL 244 (452)
Q Consensus 177 vG~~Ls~YrSGKLPKafKiiP~l~nWEeiL~lT~P~~WSp~A~~~aTriF~Snl~~-----~~aqrF~~~V-------LL 244 (452)
+..+...+.+|..+. .+..|++|.+-.+-|.|..+|.. ...++|.... -.
T Consensus 31 ~~~l~~~~~~~~~~~------------------~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~~~~~~~~ 92 (169)
T cd00159 31 IEELKKKFDRGEDID------------------DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERI 92 (169)
T ss_pred HHHHHHHHhcCCCCc------------------cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHcCCHHHHH
Confidence 555667777777654 57889999999999999999865 5566676653 44
Q ss_pred HHHHHhhhhhcccchHHHHHHHHhhcCchhhhhhhhcccccCCCcch-hHHHHHHHHHhccCCch
Q 012959 245 PRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNL-REAVIIGSVIEKISIPM 308 (452)
Q Consensus 245 prvredI~e~KkLn~hly~ALkKalyKP~AFfkGil~PL~~s~~CTl-rEA~IigSVl~K~SiPv 308 (452)
..++.-|..=-+.|.+++..|..-+++ |.- -.+...||. .=|+++|-.|-+.+.+.
T Consensus 93 ~~~~~~i~~Lp~~~~~~L~~l~~~l~~-------v~~-~~~~n~M~~~nLa~~f~p~l~~~~~~~ 149 (169)
T cd00159 93 EALKELLKSLPPENRDLLKYLLKLLHK-------ISQ-NSEVNKMTASNLAIVFAPTLLRPPDSD 149 (169)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHH-------HHh-hccCCCCCHHHHHHHHccccCCCCCcc
Confidence 555555554444455555555443333 211 011122433 34667777777777664
No 17
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=38.29 E-value=75 Score=27.51 Aligned_cols=45 Identities=13% Similarity=0.343 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhhc
Q 012959 369 QSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSS 413 (452)
Q Consensus 369 QsLL~FvqrYk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~~ 413 (452)
.-||-+++.|.-.||.+|-+.+..++|.+++-..-++-|..|...
T Consensus 18 ~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llke 62 (85)
T PF11116_consen 18 KELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKE 62 (85)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 358899999999999999999999999999998888888776643
No 18
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=32.70 E-value=2.5e+02 Score=26.34 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=50.2
Q ss_pred CchhcHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCC-cchHHHHHHHHHHHHhhhhcCH
Q 012959 306 IPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRV-MPVIWHQSLLAFVQRYKNELQK 384 (452)
Q Consensus 306 iPvlHsaaAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~-lPVlWHQsLL~FvqrYk~dls~ 384 (452)
||.-.-...|.+++.-..+..+.=||++|++++- ...+..++.+|.+..++.+. .-+. + .....||+
T Consensus 50 i~~~~K~~~l~~~~~~~~~~~~~nfl~lL~e~~R---~~~l~~I~~~f~~l~~~~~~~~~~~-----V----~sA~~Ls~ 117 (184)
T PRK13434 50 VSPEEKEQTLAKNLRGKISDITLNFLGVLLNKGR---FIYLPEIQKDFTVELDKKKGRVRAQ-----I----VSYPSLEP 117 (184)
T ss_pred CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHcCeEEEE-----E----EEcCCCCH
Confidence 4443333444455443445556679999999875 35577777777766543211 0000 0 01236999
Q ss_pred HHHHHHHHHHHhCCCCC
Q 012959 385 EDKDDLRILLKKQKHKL 401 (452)
Q Consensus 385 eqk~~L~~Ll~~~~H~~ 401 (452)
+|++.|.+.+.++....
T Consensus 118 ~q~~~l~~~L~k~~g~~ 134 (184)
T PRK13434 118 AQVDKLGSILSEKFKSE 134 (184)
T ss_pred HHHHHHHHHHHHHHCCE
Confidence 99999999997765443
No 19
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=31.62 E-value=26 Score=36.17 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=15.7
Q ss_pred CCchhhHHHHHHHHHHHHHHH
Q 012959 46 ISSGISSKILKEAMIQQKEVL 66 (452)
Q Consensus 46 vd~~~SrkIL~~Ar~Qq~E~~ 66 (452)
-|=.||-|..+-+|+.+.+..
T Consensus 223 kdLSmStR~hkyGRQ~~~~~~ 243 (314)
T PF06524_consen 223 KDLSMSTRSHKYGRQGQADED 243 (314)
T ss_pred ccceeeeecchhccccCCCcC
Confidence 356788888888888877654
No 20
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=28.69 E-value=2.7e+02 Score=28.08 Aligned_cols=87 Identities=16% Similarity=0.097 Sum_probs=51.5
Q ss_pred CCchhcHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCH
Q 012959 305 SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQK 384 (452)
Q Consensus 305 SiPvlHsaaAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~ 384 (452)
+||.-.-...|.+++.-..+..+.-|+++|++++- ...+..++.+|....++.+..-+. -| .-...||+
T Consensus 145 ~i~~e~K~~ll~~l~~~~~~~~~~nfl~~lv~~~R---~~~l~~i~~~f~~l~~~~~~~~~a-------~V-tSA~pLs~ 213 (271)
T PRK13430 145 AAPAEAKRELLARLLYGKVTPVTERLAEQAVGRPR---GRSIEEGLDELSNLAAARRGRSVA-------TV-TTAVPLSD 213 (271)
T ss_pred CCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhCCC---hhhHHHHHHHHHHHHHHHcCeeEE-------EE-EecCCCCH
Confidence 34444444445555543345555679999999854 255667777777766542211000 00 01236999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 012959 385 EDKDDLRILLKKQKHKLV 402 (452)
Q Consensus 385 eqk~~L~~Ll~~~~H~~I 402 (452)
+|++.|.+.+.+..+..|
T Consensus 214 ~q~~~L~~~L~k~~g~~V 231 (271)
T PRK13430 214 EQKQRLAAALSRIYGRPV 231 (271)
T ss_pred HHHHHHHHHHHHHHCCce
Confidence 999999999987655443
No 21
>KOG1617 consensus CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase [Lipid transport and metabolism]
Probab=26.61 E-value=59 Score=32.94 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCc
Q 012959 173 LYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWT 215 (452)
Q Consensus 173 vY~~vG~~Ls~YrSGKLPKafKiiP~l~nWEeiL~lT~P~~WS 215 (452)
|-=-.|-+--||++||+|+++.+ .+.-|.-+.++| |..||
T Consensus 163 V~Lv~~~~y~ry~~l~~p~~~a~--~f~~~~~~~~l~-~~~~S 202 (243)
T KOG1617|consen 163 VLLVAGAFYLRYQNLKLPYTLAV--FFNPWKAATQLT-PLLAS 202 (243)
T ss_pred HHHHHHHHHHHHhcCCCchhHHH--hcchhhhhhhcc-chhhh
Confidence 33444666789999999999999 899999998855 66666
No 22
>KOG4557 consensus Origin recognition complex, subunit 6 [Replication, recombination and repair]
Probab=26.22 E-value=77 Score=32.12 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccccCCCchHHHH-HhhcCCCCCchhHHHHhHHHh-----------hcCCChHHHHH
Q 012959 170 FINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQV-LYLTEPEKWTPNAMFQATRIF-----------SSNLNAKKAER 237 (452)
Q Consensus 170 VvevY~~vG~~Ls~YrSGKLPKafKiiP~l~nWEei-L~lT~P~~WSp~A~~~aTriF-----------~Snl~~~~aqr 237 (452)
.++|-+.+-.+|+.|++. ||- =+++ +.+|+|. +|..|+|+|.|+. +|++++.+.++
T Consensus 105 c~evi~~a~~vl~syk~~-lpa----------T~~~~~D~SrP~-ft~aA~~~ack~lKlKVdK~kli~~sg~~~s~F~~ 172 (262)
T KOG4557|consen 105 CVEVIKSAQNVLSSYKER-LPA----------TRRANADFSRPV-FTAAAFYLACKKLKLKVDKLKLIEVSGTSESEFSC 172 (262)
T ss_pred HHHHHHHHHHHHHHHHhc-Cch----------hhhcCCcccchH-HHHHHHHHHHHHHHHhhhHhhcccccCCCHHHHHH
Confidence 467888999999999986 332 2222 5678886 9999999999965 57777766554
No 23
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=23.38 E-value=1.7e+02 Score=28.37 Aligned_cols=67 Identities=16% Similarity=0.453 Sum_probs=34.3
Q ss_pred HhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcC----HHH-----------------HHHHHHHH
Q 012959 336 EKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQ----KED-----------------KDDLRILL 394 (452)
Q Consensus 336 dKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls----~eq-----------------k~~L~~Ll 394 (452)
.+.+.++...|.++|.-| ++....| |+-||+.+.| ++| |+.++..+
T Consensus 2 a~el~i~~~~v~~~i~Ll----~eG~TvP---------FIARYRKe~TG~Lde~~lR~i~~~~~~~~~L~~Rk~~il~~i 68 (193)
T PF09371_consen 2 AEELNIKPKQVENVIKLL----DEGNTVP---------FIARYRKEMTGGLDEVQLREIQDRYEYLRELEKRKESILKSI 68 (193)
T ss_dssp -------HHHHHHHHHHH----HTT--HH---------HHHHH-HHHHTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHH----hCCCCcc---------hhhhhhhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888755 2344444 7788887654 333 34455555
Q ss_pred HhCCCCCCCHHHHHHHhhcCCCC
Q 012959 395 KKQKHKLVTPEIIRELDSSRNRG 417 (452)
Q Consensus 395 ~~~~H~~ItpEIrreL~~~~~R~ 417 (452)
..++ ..|||++..|.+...-.
T Consensus 69 ~eqg--kLt~eL~~~I~~a~tl~ 89 (193)
T PF09371_consen 69 EEQG--KLTPELKQAIENATTLQ 89 (193)
T ss_dssp HHTT-----HHHHHHHHH--SHH
T ss_pred HHcc--cCCHHHHHHHHhcCCHH
Confidence 5554 47999999999877643
No 24
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=22.41 E-value=4.1e+02 Score=22.86 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=48.2
Q ss_pred cCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 012959 322 EYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLK 395 (452)
Q Consensus 322 ~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~~~~~lPVlWHQsLL~FvqrYk~dls~eqk~~L~~Ll~ 395 (452)
.++..---+|.-++...+.+|-.-.+.+..++....... ..+-.|+...+..++.++|..|+..+-
T Consensus 39 ~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~r~~ll~~l~ 104 (140)
T PF05099_consen 39 EVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEP--------IDLEELLRELRDSLSPEEREDLLRMLI 104 (140)
T ss_dssp S--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHC--------CHHHHHHHHHCTS--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhcc--------ccHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 366677788888899999999999999988886665541 234466777788889999999988775
No 25
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=21.65 E-value=99 Score=29.66 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=36.0
Q ss_pred CCCcchhHHHHHHHHHhcc-CCchhcHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhc
Q 012959 286 SGTCNLREAVIIGSVIEKI-SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLE 358 (452)
Q Consensus 286 s~~CTlrEA~IigSVl~K~-SiPvlHsaaAL~kl~~~~~sg~~s~firvLldKKYaLPy~viDalV~hFlrF~~ 358 (452)
-|-||++||+=+-+ .. .=|-.+.|. -|...|.|--.-++.++.||.-|.-
T Consensus 115 kGkltl~qal~lL~---~Hq~~P~~Wtae--------------------kIA~eY~L~~~dv~~iL~yF~~F~v 165 (179)
T PF06784_consen 115 KGKLTLRQALELLN---NHQLDPETWTAE--------------------KIAQEYKLDEKDVKNILKYFKPFEV 165 (179)
T ss_pred CCceeHHHHHHHHH---HhccCccccCHH--------------------HHHHHhCCCHHHHHHHHHhcCCcee
Confidence 48899999986433 22 223333333 2567899999999999999998875
No 26
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=20.37 E-value=61 Score=40.01 Aligned_cols=40 Identities=28% Similarity=0.477 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhhhHHHHHh--h--hhhcccchHHHHHHHHhhcCch
Q 012959 232 AKKAERFYKLVLLPRIRDD--I--RKNKKLHFALYQALKKSLYKPA 273 (452)
Q Consensus 232 ~~~aqrF~~~VLLprvred--I--~e~KkLn~hly~ALkKalyKP~ 273 (452)
+-.|||.|.-+|-...|+. + ++.-||||- ....||+..|+
T Consensus 2058 ~L~AqrlfgdilndafR~mgrmfa~eEAkinf~--E~~ekall~pA 2101 (3015)
T KOG0943|consen 2058 PLHAQRLFGDILNDAFREMGRMFAREEAKINFL--EGREKALLLPA 2101 (3015)
T ss_pred cchHhhhhhHHHHHHHHHHHhhhhhhhhhhhhh--hhhhhhhcccC
Confidence 4468999999999998888 3 566677764 55566665554
Done!