BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012960
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/233 (54%), Positives = 161/233 (69%), Gaps = 9/233 (3%)
Query: 114 LRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCD 173
+ D+P S+DWR+KGAVT VKDQ CG+CWAFS ++EGIN I TGSLVSLSEQELIDCD
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 174 RSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHI 233
+ N GC GGLMD A++++ N G+ TE YPYR G CN + Q + +
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVAR--------AAQNSPVV 112
Query: 234 VTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIV 293
V IDG++DVP N+E+ L +AV QPVSV + S +AF YS G+FTG C T LDH V +V
Sbjct: 113 VHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVV 172
Query: 294 GYD-SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 345
GY +E+G YW +KNSWG SWG GY+ +++++G S G+CGI M ASYP KT
Sbjct: 173 GYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKT 225
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 127/233 (54%), Positives = 153/233 (65%), Gaps = 12/233 (5%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
VPAS+DWRKKGAVT VKDQ CG+CWAFS A+EGIN+I T LVSLSEQEL+DCD
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
N GC GGLMDYA++F+ + GI TE +YPY G C+ V + N V+I
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCD-----------VSKENAPAVSI 110
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
DG+++VPEN+E LL+AV QPVSV I FQ YS G+FTG C T LDH V IVGY
Sbjct: 111 DGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYG 170
Query: 297 SE-NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKTGQN 348
+ +G YW +KNSWG WG GY+ M+R + G+CGI M ASYP K N
Sbjct: 171 TTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSN 223
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 258 bits (659), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 162/233 (69%), Gaps = 13/233 (5%)
Query: 116 DVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRS 175
D+P SIDWR+ GAV VK+Q CG+CWAFS A+EGIN+IVTG L+SLSEQ+L+DC +
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDC-TT 60
Query: 176 YNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GG M+ A+QF++ N GI++E+ YPYRGQ G CN +N +V+
Sbjct: 61 ANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNST------------VNAPVVS 108
Query: 236 IDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGY 295
ID Y++VP +NE+ L +AV QPVSV + + R FQLY SGIFTG C+ S +HA+ +VGY
Sbjct: 109 IDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGY 168
Query: 296 DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKTGQN 348
+EN D+WI+KNSWG++WG +GY+ +RN N G CGI ASYP K G N
Sbjct: 169 GTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKKGTN 221
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/229 (55%), Positives = 157/229 (68%), Gaps = 13/229 (5%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P +DWR GAV ++KDQ CG+CWAFS A+EGINKI TG L+SLSEQEL+DC R+
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 177 NS-GCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N+ GC GG M +QF+I N GI+TE +YPY + GQCN LQ ++ V+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCN----------LDLQQEKY-VS 109
Query: 236 IDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGY 295
ID Y++VP NNE L AV QPVSV + + FQ YSSGIFTGPC T++DHAV IVGY
Sbjct: 110 IDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGY 169
Query: 296 DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
+E G+DYWI+KNSWG +WG GYM +QRN G +G CGI ASYP K
Sbjct: 170 GTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVG-GVGQCGIAKKASYPVK 217
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 254 bits (648), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 126/229 (55%), Positives = 156/229 (68%), Gaps = 13/229 (5%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P+ +DWR GAV ++K Q CG CWAFSA +EGINKIVTG L+SLSEQELIDC R+
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 177 NS-GCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N+ GC GG + +QF+I N GI+TE++YPY Q G+CN LQ N VT
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVD----------LQ-NEKYVT 109
Query: 236 IDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGY 295
ID Y++VP NNE L AV QPVSV + + AF+ YSSGIFTGPC T++DHAV IVGY
Sbjct: 110 IDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGY 169
Query: 296 DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
+E G+DYWI+KNSW +WG GYM + RN G + G CGI + SYP K
Sbjct: 170 GTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYPVK 217
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/229 (55%), Positives = 156/229 (68%), Gaps = 13/229 (5%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P +DWR GAV ++KDQ CG+ WAFS A+EGINKI TG L+SLSEQEL+DC R+
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 177 NS-GCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N+ GC GG M +QF+I N GI+TE +YPY + GQCN LQ ++ V+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCN----------LDLQQEKY-VS 109
Query: 236 IDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGY 295
ID Y++VP NNE L AV QPVSV + + FQ YSSGIFTGPC T++DHAV IVGY
Sbjct: 110 IDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGY 169
Query: 296 DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
+E G+DYWI+KNSWG +WG GYM +QRN G +G CGI ASYP K
Sbjct: 170 GTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVG-GVGQCGIAKKASYPVK 217
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/319 (44%), Positives = 185/319 (57%), Gaps = 18/319 (5%)
Query: 27 ELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEF 86
+LF +W H K Y + EK R +IF+DN ++ + N N+S+ L LN FADL++ EF
Sbjct: 20 QLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-NNSYWLGLNEFADLSNDEF 78
Query: 87 KASFLG-FSAASIDHDRRRNASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFS 145
++G A+I+ + NL P ++DWRKKGAVT V+ Q SCG+CWAFS
Sbjct: 79 NEKYVGSLIDATIEQSYDEEFINEDIVNL---PENVDWRKKGAVTPVRHQGSCGSCWAFS 135
Query: 146 ATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYP 205
A +EGINKI TG LV LSEQEL+DC+R + GC GG YA ++V KN GI YP
Sbjct: 136 AVATVEGINKIRTGKLVELSEQELVDCERR-SHGCKGGYPPYALEYVAKN-GIHLRSKYP 193
Query: 206 YRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICG 265
Y+ + G C + Q+ IV G V NNE LL A+ QPVSV +
Sbjct: 194 YKAKQGTCRAK-----------QVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVES 242
Query: 266 SERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 325
R FQLY GIF GPC T +D AV VGY G Y +IKNSWG +WG GY+ ++R
Sbjct: 243 KGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRA 302
Query: 326 TGNSLGICGINMLASYPTK 344
GNS G+CG+ + YPTK
Sbjct: 303 PGNSPGVCGLYKSSYYPTK 321
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 247 bits (631), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 158/228 (69%), Gaps = 14/228 (6%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P+ +DWR KGAV +K+Q CG+CWAFSA A+E INKI TG L+SLSEQEL+DCD +
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
+ GC GG M+ A+Q++I N GIDT+++YPY G C ++ +V+I
Sbjct: 60 SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRL-------------RVVSI 106
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
+G++ V NNE L AV +QPVSV + + FQ YSSGIFTGPC T+ +H V+IVGY
Sbjct: 107 NGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYG 166
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
+++G +YWI++NSWG++WG GY+ M+RN +S G+CGI L SYPTK
Sbjct: 167 TQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK 214
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 244 bits (623), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 119/229 (51%), Positives = 155/229 (67%), Gaps = 13/229 (5%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P+ +DWR GAV ++K Q CG WAFSA +EGINKI +GSL+SLSEQELIDC R+
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 177 NS-GCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N+ GC GG + +QF+I + GI+TE++YPY Q G C+ V ++ VT
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCD-----------VALQDQKYVT 109
Query: 236 IDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGY 295
ID Y++VP NNE L AV QPVSV + + AF+ Y+SGIFTGPC T++DHA++IVGY
Sbjct: 110 IDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGY 169
Query: 296 DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
+E GVDYWI+KNSW +WG GYM + RN G + G CGI + SYP K
Sbjct: 170 GTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYPVK 217
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/318 (41%), Positives = 182/318 (57%), Gaps = 19/318 (5%)
Query: 27 ELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEF 86
+LFE+W +H K Y + EK R +IF+DN ++ + N N+S+ L LN FAD+++ EF
Sbjct: 64 QLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NNSYWLGLNVFADMSNDEF 122
Query: 87 KASFLGFSAASIDHDRRRNASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSA 146
K + G A + V + G++ ++P +DWR+KGAVT VK+Q SCG+ WAFSA
Sbjct: 123 KEKYTGSIAGNYTTTELSYEEVLNDGDV-NIPEYVDWRQKGAVTPVKNQGSCGSAWAFSA 181
Query: 147 TGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPY 206
IE I KI TG+L SEQEL+DCDR + GC GG A Q V + +GI YPY
Sbjct: 182 VSTIESIIKIRTGNLNEYSEQELLDCDRR-SYGCNGGYPWSALQLVAQ-YGIHYRNTYPY 239
Query: 207 RGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGS 266
G C + + + DG + V NE LL ++ QPVSV + +
Sbjct: 240 EGVQRYCRSR-----------EKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAA 288
Query: 267 ERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNT 326
+ FQLY GIF GPC +DHAV VGY G +Y +I+NSWG WG NGY+ ++R T
Sbjct: 289 GKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIRNSWGTGWGENGYIRIKRGT 344
Query: 327 GNSLGICGINMLASYPTK 344
GNS G+CG+ + YP K
Sbjct: 345 GNSYGVCGLYTSSFYPVK 362
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 234 bits (598), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 119/229 (51%), Positives = 146/229 (63%), Gaps = 21/229 (9%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P IDWRKKGAVT VK+Q CG+CWAFS +E IN+I TG+L+SLSEQ+L+DC++
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
N GC GG YAYQ++I N GIDTE +YPY+ G C K +V I
Sbjct: 60 NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAK--------------KVVRI 105
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
DGYK VP NE L +AV +QP V I S + FQ Y SGIF+GPC T L+H V+IVGY
Sbjct: 106 DGYKGVPHCNENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYW 165
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 345
DYWI++NSWGR WG GY+ M+R G G+CGI L YPTK
Sbjct: 166 K----DYWIVRNSWGRYWGEQGYIRMKRVGG--CGLCGIARLPYYPTKA 208
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 234 bits (597), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 120/229 (52%), Positives = 146/229 (63%), Gaps = 21/229 (9%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P IDWRKKGAVT VK+Q SCG+CWAFS +E IN+I TG+L+SLSEQEL+DCD+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
N GC GG +AYQ++I N GIDT+ +YPY+ G C Q +V+I
Sbjct: 60 NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC--------------QAASKVVSI 105
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
DGY VP NE L QAV QP +V I S FQ YSSGIF+GPC T L+H V IVGY
Sbjct: 106 DGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQ 165
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 345
+ +YWI++NSWGR WG GY+ M R G G+CGI L YPTK
Sbjct: 166 A----NYWIVRNSWGRYWGEKGYIRMLRVGG--CGLCGIARLPYYPTKA 208
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 182/325 (56%), Gaps = 26/325 (8%)
Query: 25 INELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHN---NMGNSSFTLSLNAFADL 81
++ + W K +GK Y + E+ R I+E N FV HN +MG S+ L +N D+
Sbjct: 8 LDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDM 67
Query: 82 THQEFKASFLGFSAASIDHDRRRNASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGAC 141
T +E + S+ + +RN + +S N R +P S+DWR+KG VTEVK Q SCGA
Sbjct: 68 TSEEVMSLM---SSLRVPSQWQRNITYKSNPN-RILPDSVDWREKGCVTEVKYQGSCGAA 123
Query: 142 WAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNHGID 199
WAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N GID
Sbjct: 124 WAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGID 183
Query: 200 TEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-P 258
++ YPY+ +C T Y ++P E L +AV + P
Sbjct: 184 SDASYPYKAMDQKCQYDS------------KYRAATCSKYTELPYGREDVLKEAVANKGP 231
Query: 259 VSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMN 317
VSVG+ +F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G
Sbjct: 232 VSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEE 291
Query: 318 GYMHMQRNTGNSLGICGINMLASYP 342
GY+ M RN GN CGI SYP
Sbjct: 292 GYIRMARNKGNH---CGIASFPSYP 313
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 182/320 (56%), Gaps = 24/320 (7%)
Query: 29 FETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHN---NMGNSSFTLSLNAFADLTHQE 85
+E W K H K Y+++ ++ R I+E N +++ HN ++G ++ L++N D+T +E
Sbjct: 11 WELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEE 70
Query: 86 FKASFLGFSAASIDHDRRRNASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFS 145
G + H R N ++ P P S+D+RKKG VT VK+Q CG+CWAFS
Sbjct: 71 VVQKMTGLKVP-LSHSRS-NDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFS 128
Query: 146 ATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYP 205
+ GA+EG K TG L++LS Q L+DC S N GCGGG M A+Q+V KN GID+E YP
Sbjct: 129 SVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYP 187
Query: 206 YRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVV-AQPVSVGIC 264
Y GQ C + GY+++PE NEK L +AV PVSV I
Sbjct: 188 YVGQEESC------------MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 235
Query: 265 GSERAFQLYSSGIFTGPC--STSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHM 322
S +FQ YS G++ S +L+HAVL VGY + G +WIIKNSWG +WG GY+ M
Sbjct: 236 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 295
Query: 323 QRNTGNSLGICGINMLASYP 342
RN N+ CGI LAS+P
Sbjct: 296 ARNKNNA---CGIANLASFP 312
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 141/229 (61%), Gaps = 21/229 (9%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P +DWR KGAV +K+Q CG+CWAFS +E IN+I TG+L+SLSEQ+L+DC +
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
N GC GG D AYQ++I N GIDTE +YPY+ G C K +V I
Sbjct: 60 NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAK--------------KVVRI 105
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
DG K VP+ NE L AV +QP V I S + FQ Y GIFTGPC T L+H V+IVGY
Sbjct: 106 DGCKGVPQCNENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGY- 164
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 345
G DYWI++NSWGR WG GY M+R G G+CGI L YPTK
Sbjct: 165 ---GKDYWIVRNSWGRHWGEQGYTRMKRVGG--CGLCGIARLPFYPTKA 208
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 181/323 (56%), Gaps = 26/323 (8%)
Query: 26 NELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHN---NMGNSSFTLSLNAFADLT 82
++L+ W + + K Y+ + Q R I+E N + +HN ++G ++TL LN F D+T
Sbjct: 2 DDLWHQWKRMYNKEYNGADD-QHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMT 60
Query: 83 HQEFKASFLGFSAASIDHDRRRNASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACW 142
+EFKA +L + + D + V N R VP IDWR+ G VTEVKDQ +CG+ W
Sbjct: 61 FEEFKAKYLTEMSRASD---ILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGW 117
Query: 143 AFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDYAYQFVIKNHGIDTE 201
AFS TG +EG + +S SEQ+L+DC R + N+GCGGGLM+ AYQ+ +K G++TE
Sbjct: 118 AFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQFGLETE 176
Query: 202 KDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSV 261
YPY GQC K L + + G+ V +E +L V A+ +
Sbjct: 177 SSYPYTAVEGQCRYNKQLG------------VAKVTGFYTVHSGSEVELKNLVGAEGPAA 224
Query: 262 GICGSERAFQLYSSGIFTGPCSTSL--DHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGY 319
E F +Y SGI+ + L +HAVL VGY ++ G DYWI+KNSWG SWG GY
Sbjct: 225 VAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGY 284
Query: 320 MHMQRNTGNSLGICGINMLASYP 342
+ M RN GN +CGI LAS P
Sbjct: 285 IRMVRNRGN---MCGIASLASLP 304
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 221 bits (564), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 175/324 (54%), Gaps = 35/324 (10%)
Query: 32 WCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNM---GNSSFTLSLNAFADLTHQEFKA 88
W H + Y +E +R ++E N + HN G SFT+++NAF D+T +EF+
Sbjct: 11 WKAMHNRLYGMNEEGWRRA-VWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ 69
Query: 89 SFLGFSAASIDHDRRRNASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATG 148
G + R+ Q P + P S+DWR+KG VT VK+Q CG+ WAFSATG
Sbjct: 70 VMNGLQ----NRKPRKGKVFQEP-LFYEAPRSVDWREKGYVTPVKNQGQCGSSWAFSATG 124
Query: 149 AIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYR 207
A+EG TG L+SLSEQ L+DC N GC GGLMDYA+Q+V N G+D+E+ YPY
Sbjct: 125 ALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 184
Query: 208 GQAGQCNKQKVLHFLTSFVLQLNRHIVTID-GYKDVPENNEKQLLQAV-VAQPVSVGICG 265
C ++ V D G+ D+P+ EK L++AV P+SV I
Sbjct: 185 ATEESCKYNP-------------KYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDA 230
Query: 266 SERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWGRSWGMNGY 319
+F Y GI+ P S +DH VL+VGY E +G YW++KNSWG WGM GY
Sbjct: 231 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGY 290
Query: 320 MHMQRNTGNSLGICGINMLASYPT 343
+ M ++ N CGI ASYPT
Sbjct: 291 VKMAKDRRNH---CGIASAASYPT 311
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 175/324 (54%), Gaps = 35/324 (10%)
Query: 32 WCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNM---GNSSFTLSLNAFADLTHQEFKA 88
W H + Y +E +R ++E N + HN G SFT+++NAF D+T +EF+
Sbjct: 15 WKAMHNRLYGMNEEGWRRA-VWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ 73
Query: 89 SFLGFSAASIDHDRRRNASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATG 148
GF + R+ Q P + P S+DWR+KG VT VK+Q CG+ WAFSATG
Sbjct: 74 VMNGFQ----NRKPRKGKVFQEP-LFYEAPRSVDWREKGYVTPVKNQGQCGSXWAFSATG 128
Query: 149 AIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYR 207
A+EG TG L+SLSEQ L+DC N GC GGLMDYA+Q+V N G+D+E+ YPY
Sbjct: 129 ALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 188
Query: 208 GQAGQCNKQKVLHFLTSFVLQLNRHIVTID-GYKDVPENNEKQLLQAV-VAQPVSVGICG 265
C ++ V D G+ D+P+ EK L++AV P+SV I
Sbjct: 189 ATEESCKYNP-------------KYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDA 234
Query: 266 SERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWGRSWGMNGY 319
+F Y GI+ P S +DH VL+VGY E + YW++KNSWG WGM GY
Sbjct: 235 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 294
Query: 320 MHMQRNTGNSLGICGINMLASYPT 343
+ M ++ N CGI ASYPT
Sbjct: 295 VKMAKDRRNH---CGIASAASYPT 315
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 151/235 (64%), Gaps = 23/235 (9%)
Query: 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN 177
PASIDWRKKGAVT VKDQ +CG CWAF ATGAIEGI+ I TG L+S+SEQ+++DCD
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 178 SGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT-I 236
GG D A+++VI N GI ++ +YPY G G C+ LN+ I I
Sbjct: 62 XXXGGDADD-AFRWVITNGGIASDANYPYTGVDGTCD--------------LNKPIAARI 106
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYS-SGIFTG-PCS---TSLDHAVL 291
DGY +VP N+ LL AV QPVSV I S +FQLY+ GIF G CS ++DH VL
Sbjct: 107 DGYTNVP-NSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVL 165
Query: 292 IVGYDSE-NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 345
IVGY S DYWI+KNSWG WG++GY+ ++RNT G+C I+ SYPTK+
Sbjct: 166 IVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTKS 220
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 185/341 (54%), Gaps = 47/341 (13%)
Query: 22 CSDINELF-ETWCK---QHGKAYSSEQEKQQRLKIFEDNYAFVTQHN---NMGNSSFTLS 74
CS LF E W + H K+YSS E+ +R IF+DN A + +HN G +++ +
Sbjct: 16 CSLPKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKA 75
Query: 75 LNAFADLTHQEFKASFLGFSAASIDHDRRRNASVQSPGNLR--------DVPASIDWRKK 126
+N F D++ +EF A +R + + P NLR + AS+DWR
Sbjct: 76 MNQFGDMSKEEFLAYV----------NRGKAQKPKHPENLRMPYVSSKKPLAASVDWRSN 125
Query: 127 GAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLM 185
AV+EVKDQ CG+ W+FS TGA+EG + G L SLSEQ LIDC SY N+GC GG M
Sbjct: 126 -AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWM 184
Query: 186 DYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPEN 245
D A+ + I ++GI +E YPY Q C ++ + T+ GY D+P
Sbjct: 185 DSAFSY-IHDYGIMSESAYPYEAQGDYCR------------FDSSQSVTTLSGYYDLPSG 231
Query: 246 NEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIVGYDSENGVD 302
+E L AV A PV+V I ++ Q YS G+F + L+H VL+VGY S+NG D
Sbjct: 232 DENSLADAVGQAGPVAVAIDATDE-LQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQD 290
Query: 303 YWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
YWI+KNSWG WG +GY RN GN+ CGI ASYP
Sbjct: 291 YWILKNSWGSGWGESGYWRQVRNYGNN---CGIATAASYPA 328
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 218 bits (556), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/227 (48%), Positives = 142/227 (62%), Gaps = 13/227 (5%)
Query: 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN 177
P SIDWR KGAVT VK+Q +CG+ WAFS +EGINKIVTG+L+ LSEQEL+DCD+ ++
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDK-HS 60
Query: 178 SGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTID 237
GC GG + Q+V N+G+ T K YPY+ + +C V I
Sbjct: 61 YGCKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQYKCR-----------ATDKPGPKVKIT 108
Query: 238 GYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDS 297
GYK VP N E L A+ QP+SV + + FQLY SG+F GPC T LDHAV VGY +
Sbjct: 109 GYKRVPSNXETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGT 168
Query: 298 ENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
+G +Y IIKNSWG +WG GYM ++R +GNS G CG+ + YP K
Sbjct: 169 SDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK 215
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 214 bits (546), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 140/228 (61%), Gaps = 13/228 (5%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P ++DWRKKGAVT V+ Q SCG+CWAFSA +EGINKI TG LV LSEQEL+DC+R
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
+ GC GG YA ++V KN GI YPY+ + G C + Q+ IV
Sbjct: 60 SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAK-----------QVGGPIVKT 107
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
G V NNE LL A+ QPVSV + R FQLY GIF GPC T +DHAV VGY
Sbjct: 108 SGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYG 167
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G Y +IKNSWG +WG GY+ ++R GNS G+CG+ + YPTK
Sbjct: 168 KSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 140/228 (61%), Gaps = 13/228 (5%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P ++DWRKKGAVT V+ Q SCG+CWAFSA +EGINKI TG LV LSEQEL+DC+R
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
+ GC GG YA ++V KN GI YPY+ + G C + Q+ IV
Sbjct: 60 SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAK-----------QVGGPIVKT 107
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
G V NNE LL A+ QPVSV + R FQLY GIF GPC T ++HAV VGY
Sbjct: 108 SGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYG 167
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G Y +IKNSWG +WG GY+ ++R GNS G+CG+ + YPTK
Sbjct: 168 KSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 141/227 (62%), Gaps = 17/227 (7%)
Query: 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN 177
P SIDWR+KGAVT VK+Q CG+CWAFS IEGINKI+TG L+SLSEQEL+DC+R +
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-S 60
Query: 178 SGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTID 237
GC GG + Q+V+ N G+ TE++YPY + G+C + V I
Sbjct: 61 HGCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAK-----------DKKGPKVYIT 108
Query: 238 GYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDS 297
GYK VP N+E L+QA+ QPVSV R FQ Y GI+ GPC T+ DHAV VGY
Sbjct: 109 GYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGY-- 166
Query: 298 ENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G Y ++KNSWG +WG GY+ ++R +G S G CG+ + +P K
Sbjct: 167 --GKTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK 211
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 208 bits (530), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 140/231 (60%), Gaps = 16/231 (6%)
Query: 116 DVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRS 175
++PA +DWR +G VT VKDQ CG+CWAFS TGA+EG + TG LVSLSEQEL+DC R+
Sbjct: 6 ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRA 65
Query: 176 Y-NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N C GG M+ A+Q+V+ + GI +E YPY + +C Q +V
Sbjct: 66 EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSC------------EKVV 113
Query: 235 TIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVG 294
I G+KDVP +E + A+ PVS+ I + FQ Y G+F C T LDH VL+VG
Sbjct: 114 KILGFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVG 173
Query: 295 Y--DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
Y D E+ D+WI+KNSWG WG +GYM+M + G G CG+ + AS+P
Sbjct: 174 YGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEE-GQCGLLLDASFPV 223
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 156/279 (55%), Gaps = 31/279 (11%)
Query: 74 SLNAFADLTHQEFKASFLGFSAASIDHDRRRNASVQSPGNLRDVPASIDWRKKGAVTEVK 133
++NAF D+T +EF+ GF + R+ Q P + P S+DWR+KG VT VK
Sbjct: 1 AMNAFGDMTSEEFRQVMNGFQ----NRKPRKGKVFQEP-LFYEAPRSVDWREKGYVTPVK 55
Query: 134 DQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDYAYQFV 192
+Q CG+CWAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDYA+Q+V
Sbjct: 56 NQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV 115
Query: 193 IKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTID-GYKDVPENNEKQLL 251
N G+D+E+ YPY C ++ V D G+ D+P+ EK L+
Sbjct: 116 QDNGGLDSEESYPYEATEESCKYNP-------------KYSVANDAGFVDIPK-QEKALM 161
Query: 252 QAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYW 304
+AV P+SV I +F Y GI+ P S +DH VL+VGY E + YW
Sbjct: 162 KAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYW 221
Query: 305 IIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 222 LVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 257
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 204 bits (519), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 149/231 (64%), Gaps = 13/231 (5%)
Query: 116 DVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC-DR 174
D P S DW KKG +T+VK Q CG+ WAFSATGAIE + I TG+LVSLSEQELIDC D
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
S GC G ++++V+K+ GI +E DYPY+ + G+C ++ +T ++ + V
Sbjct: 61 S--EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVT-----IDNYGV 113
Query: 235 TIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGP-CSTS--LDHAVL 291
I + E L V+ QP+SV I + F YS GI+ G CS+ ++H VL
Sbjct: 114 QILSNESTESEAESSLQSFVLEQPISVSI--DAKDFHFYSGGIYDGGNCSSPYGINHFVL 171
Query: 292 IVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
IVGY SE+GVDYWI KNSWG WG++GY+ +QRNTGN LG+CG+N ASYP
Sbjct: 172 IVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYP 222
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 138/229 (60%), Gaps = 19/229 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+D+R+KG VT VK+Q CG+CWAFS+ GA+EG K TG L++LS Q L+DC S
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSE 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
N GCGGG M A+Q+V KN GID+E YPY GQ C +
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC------------MYNPTGKAAKC 107
Query: 237 DGYKDVPENNEKQLLQAVV-AQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIV 293
GY+++PE NEK L +AV PVSV I S +FQ YS G++ S +L+HAVL V
Sbjct: 108 RGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAV 167
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
GY G +WIIKNSWG +WGM GY+ M RN N+ CGI LAS+P
Sbjct: 168 GYGESKGNKHWIIKNSWGENWGMGGYIKMARNKNNA---CGIANLASFP 213
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 141/228 (61%), Gaps = 17/228 (7%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P SIDWR+KGAVT V++Q CG+CW FS+ A+EGINKIVTG L+SLSEQEL+DC+R
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
+ GC GG YA Q+V N GI + YPY G QC Q V
Sbjct: 60 SYGCRGGFPLYALQYV-ANSGIHLRQYYPYEGVQRQCRAS-----------QAKGPKVKT 107
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
DG VP NNE+ L+Q + QPVS+ + RAFQ Y GIF GPC TS+DHAV VGY
Sbjct: 108 DGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGY- 166
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G DY +IKNSWG WG GY+ ++R +GN G CG+ + +PTK
Sbjct: 167 ---GNDYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK 211
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 197 bits (502), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 138/229 (60%), Gaps = 19/229 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P SID+RKKG VT VK+Q CG+CWAFS+ GA+EG K TG L++LS Q L+DC S
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSE 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
N GCGGG M A+Q+V +N GID+E YPY GQ C +
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC------------MYNPTGKAAKC 107
Query: 237 DGYKDVPENNEKQLLQAVV-AQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIV 293
GY+++PE NEK L +AV PVSV I S +FQ YS G++ S +L+HAVL V
Sbjct: 108 RGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAV 167
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
GY + G +WIIKNSWG SWG GY+ M RN N+ CGI LAS+P
Sbjct: 168 GYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNA---CGIANLASFP 213
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 138/229 (60%), Gaps = 19/229 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+D+RKKG VT VK+Q CG+CWAFS+ GA+EG K TG L++LS Q L+DC S
Sbjct: 3 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSE 61
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
N GCGGG M A+Q+V KN GID+E YPY GQ C +
Sbjct: 62 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC------------MYNPTGKAAKC 109
Query: 237 DGYKDVPENNEKQLLQAVV-AQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIV 293
GY+++PE NEK L +AV PVSV I S +FQ YS G++ S +L+HAVL V
Sbjct: 110 RGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAV 169
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
GY + G +WIIKNSWG +WG GY+ M RN N+ CGI LAS+P
Sbjct: 170 GYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNA---CGIANLASFP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 138/229 (60%), Gaps = 19/229 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+D+RKKG VT VK+Q CG+CWAFS+ GA+EG K TG L++LS Q L+DC S
Sbjct: 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSE 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
N GCGGG M A+Q+V KN GID+E YPY GQ C +
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC------------MYNPTGKAAKC 107
Query: 237 DGYKDVPENNEKQLLQAVV-AQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIV 293
GY+++PE NEK L +AV PVSV I S +FQ YS G++ S +L+HAVL V
Sbjct: 108 RGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAV 167
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
GY + G +WIIKNSWG +WG GY+ M RN N+ CGI LAS+P
Sbjct: 168 GYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNA---CGIANLASFP 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 138/228 (60%), Gaps = 19/228 (8%)
Query: 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN 177
P S+D+RKKG VT VK+Q CG+CWAFS+ GA+EG K TG L++LS Q L+DC S N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 59
Query: 178 SGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTID 237
GCGGG M A+Q+V KN GID+E YPY GQ C +
Sbjct: 60 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC------------MYNPTGKAAKCR 107
Query: 238 GYKDVPENNEKQLLQAVV-AQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIVG 294
GY+++PE NEK L +AV PVSV I S +FQ YS G++ S +L+HAVL VG
Sbjct: 108 GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVG 167
Query: 295 YDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
Y + G +WIIKNSWG +WG GY+ M RN N+ CGI LAS+P
Sbjct: 168 YGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNA---CGIANLASFP 212
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 140/229 (61%), Gaps = 19/229 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P SID+RKKG VT VK+Q CG+CWAFS+ GA+EG K TG+L++L+ Q L+DC S
Sbjct: 1 APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDC-VSE 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
N GCGGG M A+Q+V +N GID+E YPY GQ C +
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC------------MYNPTGKAAKC 107
Query: 237 DGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIV 293
GY+++PE NE L +AV A PVSV I S +FQ YS+G++ S +L+HAVL V
Sbjct: 108 RGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAV 167
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
GY + G +WIIKNSWG SWG GY+ M RN N+ CGI LAS+P
Sbjct: 168 GYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNA---CGIANLASFP 213
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 138/232 (59%), Gaps = 19/232 (8%)
Query: 115 RDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC-- 172
R +P S+DWR+KG VTEVK Q SCGACWAFSA GA+E K+ TG LVSLS Q L+DC
Sbjct: 2 RILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 61
Query: 173 DRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRH 232
++ N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 62 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ------------YDSKYR 109
Query: 233 IVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAV 290
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H V
Sbjct: 110 AATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGV 169
Query: 291 LIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
L+VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 170 LVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 218
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 137/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DR 174
+P S+DWR+KG VTEVK Q SCGACWAFSA GA+E K+ TG LVSLS Q L+DC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ------------YDSKYRAA 108
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 109 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 168
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 169 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 137/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DR 174
+P S+DWR+KG VTEVK Q SCGACWAFSA GA+E K+ TG LVSLS Q L+DC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ------------YDSKYRAA 108
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 109 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 168
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 169 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 137/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DR 174
+P S+DWR+KG VTEVK Q SCGACWAFSA GA+E K+ TG LVSLS Q L+DC ++
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS------------KYRAA 109
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 110 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 169
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 170 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 216
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 137/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DR 174
+P S+DWR+KG VTEVK Q SCGACWAFSA GA+E K+ TG LVSLS Q L+DC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ------------YDSKYRAA 108
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 109 TCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 168
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 169 VGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNH---CGIASFPSYP 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 137/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DR 174
+P S+DWR+KG VTEVK Q SCGACWAFSA GA+E K+ TG LVSLS Q L+DC ++
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ------------YDSKYRAA 109
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 110 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 169
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 170 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 216
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 137/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCD-RS 175
+P S+DWR+KG VTEVK Q SCGACWAFSA GA+E K+ TG LVSLS Q L+DC +
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 176 Y-NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
Y N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSAY------------RAA 108
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 109 TCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 168
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 169 VGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNH---CGIASFPSYP 215
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 134/228 (58%), Gaps = 17/228 (7%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P +DWR+KGAVT VK+Q SCG+CWAFSA IEGI KI TG+L SEQEL+DCDR
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
+ GC GG A Q V + +GI YPY G C + + +
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSR-----------EKGPYAAKT 107
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
DG + V NE LL ++ QPVSV + + + FQLY GIF GPC +DHAV VGY
Sbjct: 108 DGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY- 166
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G +Y +IKNSWG WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 167 ---GPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 137/226 (60%), Gaps = 19/226 (8%)
Query: 120 SIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSG 179
S+D+RKKG VT VK+Q CG+CWAFS+ GA+EG K TG L++LS Q L+DC S N G
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDG 60
Query: 180 CGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGY 239
CGGG M A+Q+V KN GID+E YPY GQ C + GY
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC------------MYNPTGKAAKCRGY 108
Query: 240 KDVPENNEKQLLQAVV-AQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIVGYD 296
+++PE NEK L +AV PVSV I S +FQ YS G++ S +L+HAVL VGY
Sbjct: 109 REIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG 168
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
+ G +WIIKNSWG +WG GY+ M RN N+ CGI LAS+P
Sbjct: 169 IQKGNKHWIIKNSWGENWGNKGYILMARNKNNA---CGIANLASFP 211
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 137/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DR 174
+P S+DWR+KG VTEVK Q SCGACWAFSA GA+E K+ TG LV+LS Q L+DC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ------------YDSKYRAA 108
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 109 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 168
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 169 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 134/228 (58%), Gaps = 17/228 (7%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P +DWR+KGAVT VK+Q SCG+CWAFSA IEGI KI TG+L SEQEL+DCDR
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
+ GC GG A Q V + +GI YPY G C + + +
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSR-----------EKGPYAAKT 107
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
DG + V N+ LL ++ QPVSV + + + FQLY GIF GPC +DHAV VGY
Sbjct: 108 DGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY- 166
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G +Y +IKNSWG WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 167 ---GPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 179/337 (53%), Gaps = 42/337 (12%)
Query: 25 INELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNN---MGNSSFTLSLNAFADL 81
+ E +E + + ++Y + +E+ R +IF+ +HN G S+TL +N F D+
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 82 THQEFKASFLGFSAASIDH----------DRRRNASVQSPGNLRDVPASIDWRKKGAVTE 131
T +E KA G + H D NASV+ PAS DWR +G V+
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR-------YPASFDWRDQGMVSP 130
Query: 132 VKDQASCGACWAFSATGAIEGINKIVTGSLV--SLSEQELIDCDRSYNSGCGGGLMDYAY 189
VK+Q SCG+ WAFS+TGAIE KI G+ S+SEQ+L+DC + GC GG M+ A+
Sbjct: 131 VKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPN-ALGCSGGWMNDAF 189
Query: 190 QFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQ 249
+V +N GID+E YPY G C H+ N+ + GY + +E
Sbjct: 190 TYVAQNGGIDSEGAYPYEMADGNC------HY------DPNQVAARLSGYVYLSGPDENM 237
Query: 250 LLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTS-LDHAVLIVGYDSENGVDYWII 306
L V + PV+V ++ F YS G++ P C T+ HAVLIVGY +ENG DYW++
Sbjct: 238 LADMVATKGPVAVAF-DADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLV 296
Query: 307 KNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
KNSWG WG++GY + RN N GI G+ AS PT
Sbjct: 297 KNSWGDGWGLDGYFKIARNANNHCGIAGV---ASVPT 330
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 133/227 (58%), Gaps = 17/227 (7%)
Query: 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN 177
P +DWR+KGAVT VK+Q SCG+CWAFSA IEGI KI TG+L SEQEL+DCDR +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-S 60
Query: 178 SGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTID 237
GC GG A Q V + +GI YPY G C + + + D
Sbjct: 61 YGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSR-----------EKGPYAAKTD 108
Query: 238 GYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDS 297
G + V N+ LL ++ QPVSV + + + FQLY GIF GPC +DHAV VGY
Sbjct: 109 GVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-- 166
Query: 298 ENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G +Y +IKNSWG WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 167 --GPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 136/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DR 174
+P S+DWR+KG VTEVK Q SCGA WAFSA GA+E K+ TG LVSLS Q L+DC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS------------KYRAA 108
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 109 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 168
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 169 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 136/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DR 174
+P S+DWR+KG VTEVK Q SCGA WAFSA GA+E K+ TG LVSLS Q L+DC ++
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ------------YDSKYRAA 110
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 111 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 170
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 171 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 217
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 136/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DR 174
+P S+DWR+KG VTEVK Q SCGA WAFSA GA+E K+ TG LVSLS Q L+DC ++
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS------------KYRAA 109
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 110 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 169
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 170 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 216
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 136/230 (59%), Gaps = 19/230 (8%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DR 174
+P S+DWR+KG VTEVK Q SCGA WAFSA GA+E K+ TG LVSLS Q L+DC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 175 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GG M A+Q++I N GID++ YPY+ +C
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDS------------KYRAA 108
Query: 235 TIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLI 292
T Y ++P E L +AV + PVSVG+ +F LY SG++ P C+ +++H VL+
Sbjct: 109 TCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLV 168
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY NG +YW++KNSWG ++G GY+ M RN GN CGI SYP
Sbjct: 169 VGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 133/228 (58%), Gaps = 17/228 (7%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P +DWR+KGAVT VK+Q SCG+ WAFSA IEGI KI TG+L SEQEL+DCDR
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
+ GC GG A Q V + +GI YPY G C + + +
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSR-----------EKGPYAAKT 107
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
DG + V NE LL ++ QPVSV + + + FQLY GIF GPC +DHAV VGY
Sbjct: 108 DGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY- 166
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G +Y +IKNSWG WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 167 ---GPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 133/228 (58%), Gaps = 17/228 (7%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P +DWR+KGAVT VK+Q SCG+ WAFSA IEGI KI TG+L SEQEL+DCDR
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
+ GC GG A Q V + +GI YPY G C + + +
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSR-----------EKGPYAAKT 107
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
DG + V NE LL ++ QPVSV + + + FQLY GIF GPC +DHAV VGY
Sbjct: 108 DGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY- 166
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G +Y +IKNSWG WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 167 ---GPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 133/228 (58%), Gaps = 17/228 (7%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P +DWR+KGAVT VK+Q SCG+ WAFSA IEGI KI TG+L SEQEL+DCDR
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
+ GC GG A Q V + +GI YPY G C + + +
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSR-----------EKGPYAAKT 107
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYD 296
DG + V N+ LL ++ QPVSV + + + FQLY GIF GPC +DHAV VGY
Sbjct: 108 DGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY- 166
Query: 297 SENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G +Y +IKNSWG WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 167 ---GPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 134/236 (56%), Gaps = 24/236 (10%)
Query: 116 DVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRS 175
+ P S+DWR+KG VT VK+Q CG+CWAFSATGA+EG TG L+SLSEQ L+DC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 176 Y-NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GGLMDYA+Q+V N G+D+E+ YPY C +
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK------------YNPKYSVA 108
Query: 235 TIDGYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVL 291
G+ D+P+ EK L++AV P+SV I +F Y GI+ P S +DH VL
Sbjct: 109 NDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVL 167
Query: 292 IVGYDSE----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
+VGY E + YW++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 168 VVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 220
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 133/235 (56%), Gaps = 24/235 (10%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+DWR+KG VT VK+Q CG+CWAFSATGA+EG TG L+SLSEQ L+DC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 177 -NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GGLMDYA+Q+V N G+D+E+ YPY C +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK------------YNPKYSVAN 108
Query: 236 IDGYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLI 292
G+ D+P+ EK L++AV P+SV I +F Y GI+ P S +DH VL+
Sbjct: 109 DTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLV 167
Query: 293 VGYDSE----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
VGY E + YW++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 168 VGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 219
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 136/236 (57%), Gaps = 26/236 (11%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+DWR+KG VT VK+Q CG+CWAFSATGA+EG TG L+SLSEQ L+DC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 177 -NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GGLMDYA+Q+V N G+D+E+ YPY C ++ V
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------------KYSVA 107
Query: 236 ID-GYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVL 291
D G+ D+P+ EK L++AV P+SV I +F Y GI+ P S +DH VL
Sbjct: 108 NDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVL 166
Query: 292 IVGYDSE----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
+VGY E + YW++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 167 VVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 219
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 133/236 (56%), Gaps = 24/236 (10%)
Query: 116 DVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRS 175
+ P S+DWR+KG VT VK+Q CG+ WAFSATGA+EG TG L+SLSEQ L+DC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 176 Y-NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV 234
N GC GGLMDYA+Q+V N G+D+E+ YPY C +
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK------------YNPKYSVA 108
Query: 235 TIDGYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVL 291
G+ D+P+ EK L++AV P+SV I +F Y GI+ P S +DH VL
Sbjct: 109 NDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVL 167
Query: 292 IVGYDSE----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
+VGY E + YW++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 168 VVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 220
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 132/235 (56%), Gaps = 24/235 (10%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+DWR+KG VT VK+Q CG+ WAFSATGA+EG TG L+SLSEQ L+DC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 177 -NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GGLMDYA+Q+V N G+D+E+ YPY C +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK------------YNPKYSVAN 108
Query: 236 IDGYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLI 292
G+ D+P+ EK L++AV P+SV I +F Y GI+ P S +DH VL+
Sbjct: 109 DTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLV 167
Query: 293 VGYDSE----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
VGY E + YW++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 168 VGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 219
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 132/235 (56%), Gaps = 24/235 (10%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+DWR+KG VT VK+Q CG+ WAFSATGA+EG TG L+SLSEQ L+DC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 177 -NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GGLMDYA+Q+V N G+D+E+ YPY C +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK------------YNPKYSVAN 108
Query: 236 IDGYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLI 292
G+ D+P+ EK L++AV P+SV I +F Y GI+ P S +DH VL+
Sbjct: 109 DTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLV 167
Query: 293 VGYDSE----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
VGY E + YW++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 168 VGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 219
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 135/236 (57%), Gaps = 26/236 (11%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+DWR+KG VT VK+Q CG+ WAFSATGA+EG TG L+SLSEQ L+DC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 177 -NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GGLMDYA+Q+V N G+D+E+ YPY C ++ V
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------------KYSVA 107
Query: 236 ID-GYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVL 291
D G+ D+P+ EK L++AV P+SV I +F Y GI+ P S +DH VL
Sbjct: 108 NDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVL 166
Query: 292 IVGYDSE----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
+VGY E + YW++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 167 VVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 219
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 184 bits (468), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 133/234 (56%), Gaps = 23/234 (9%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P S+DWRKKG VT VK+Q CG+CWAFSATGA+EG TG LVSLSEQ L+DC R
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 177 -NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GG M A+Q+V +N G+D+E+ YPY C + +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICK------------YRPENSVAQ 108
Query: 236 IDGYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLI 292
G+ V EK L++AV P+SV + +FQ Y SGI+ P S +LDH VL+
Sbjct: 109 DTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLV 168
Query: 293 VGYDSE----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY E + YW++KNSWG WG NGY+ + ++ N CGI ASYP
Sbjct: 169 VGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNH---CGIATAASYP 219
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 184 bits (467), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 132/229 (57%), Gaps = 15/229 (6%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCD-RS 175
+P S+DWR KGAVT VK Q C +CWAFS +EGINKI TG+LV LSEQEL+DCD +S
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 176 YNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
Y GC G + Q+V +N GI YPY + C Q+ V
Sbjct: 61 Y--GCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRAN-----------QVGGPKVK 106
Query: 236 IDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGY 295
+G V NNE LL A+ QPVSV + + R FQ Y GIF G C T +DHAV VGY
Sbjct: 107 TNGVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGY 166
Query: 296 DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344
G Y +IKNSWG WG NGY+ ++R +GNS G+CG+ + YP K
Sbjct: 167 GKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPIK 215
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 132/234 (56%), Gaps = 23/234 (9%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
+P S+DWRKKG VT VK+Q CG+ WAFSATGA+EG TG LVSLSEQ L+DC R
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 177 -NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GG M A+Q+V +N G+D+E+ YPY C + +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICK------------YRPENSVAQ 108
Query: 236 IDGYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLI 292
G+ V EK L++AV P+SV + +FQ Y SGI+ P S +LDH VL+
Sbjct: 109 DTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLV 168
Query: 293 VGYDSE----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
VGY E + YW++KNSWG WG NGY+ + ++ N CGI ASYP
Sbjct: 169 VGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNH---CGIATAASYP 219
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 137/233 (58%), Gaps = 23/233 (9%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+DWR+KG VT VK+Q CGA +AFSATGA+EG TG L+SLSEQ L+DC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 177 -NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GGLMDYA+Q+V N G+D+E+ YPY C ++ V
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------------KYSVA 107
Query: 236 ID-GYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIF--TGPCSTSLDHAVL 291
D G+ D+P+ EK L++AV P+SV I +F Y GI+ + S+SL+HA+L
Sbjct: 108 NDVGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAML 166
Query: 292 IVGYDS-ENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
+VGY N YW++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 167 VVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 216
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 135/232 (58%), Gaps = 24/232 (10%)
Query: 118 PASIDWRKKGA-VTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+DWRKKG V+ VK+Q SCG+CW FS TGA+E I TG ++SL+EQ+L+DC +++
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 177 NS-GCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N+ GC GGL A++++ N GI E YPY+GQ C Q ++ I
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCK------------FQPDKAIAF 109
Query: 236 IDGYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTG----PCSTSLDHAV 290
+ ++ N+E+ +++AV + PVS F +Y GI++ ++HAV
Sbjct: 110 VKDVANITMNDEEAMVEAVALYNPVSFAF-EVTNDFLMYRKGIYSSTSCHKTPDKVNHAV 168
Query: 291 LIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
L VGY ENG+ YWI+KNSWG WGMNGY ++R +CG+ ASYP
Sbjct: 169 LAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGK----NMCGLAACASYP 216
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 128/220 (58%), Gaps = 24/220 (10%)
Query: 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN 177
PA++DWR+KGAVT VKDQ CG+CWAFS G IEG ++ LVSLSEQ L+ CD + +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD-TID 60
Query: 178 SGCGGGLMDYAYQFVIKNHG--IDTEKDYPY---RGQAGQCNKQKVLHFLTSFVLQLNRH 232
GCGGGLMD A+ +++ ++G + TE YPY G+ QC Q+N H
Sbjct: 61 FGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQC--------------QMNGH 106
Query: 233 IV--TIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAV 290
+ I + D+P++ + + A +A+ + I +F Y+ GI T S LDH V
Sbjct: 107 EIGAAITDHVDLPQDEDA--IAAYLAENGPLAIAVDATSFMDYNGGILTSCTSEQLDHGV 164
Query: 291 LIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSL 330
L+VGY+ + YWIIKNSW WG +GY+ +++ T L
Sbjct: 165 LLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCL 204
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 18/217 (8%)
Query: 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN 177
PA++DWR +GAVT VKDQ CG+CWAFSA G +E + L +LSEQ L+ CD++ +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 178 SGCGGGLMDYAYQFVIK--NHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV- 234
SGC GGLM+ A++++++ N + TE YPY G S + H V
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEG-----------ISPPCTTSGHTVG 109
Query: 235 -TIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIV 293
TI G+ ++P++ + V PV+V + S ++ Y+ G+ T S +LDH VL+V
Sbjct: 110 ATITGHVELPQDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEALDHGVLLV 167
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSL 330
GY+ V YWIIKNSW WG GY+ + + + L
Sbjct: 168 GYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCL 204
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 122/217 (56%), Gaps = 18/217 (8%)
Query: 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN 177
PA++DWR +GAVT VKDQ CG+CWAFSA G +E + L +LSEQ L+ CD++ +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 178 SGCGGGLMDYAYQFVIK--NHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV- 234
SGC GGLM+ A++++++ N + TE YPY G S + H V
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEG-----------ISPPCTTSGHTVG 109
Query: 235 -TIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIV 293
TI G+ ++P++ + V PV+V + S ++ Y+ G+ T S LDH VL+V
Sbjct: 110 ATITGHVELPQDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLV 167
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSL 330
GY+ V YWIIKNSW WG GY+ + + + L
Sbjct: 168 GYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCL 204
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 106/187 (56%), Gaps = 17/187 (9%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+DWR+KG VT VK+Q CG+CWAFSATGA+EG TG L+SLSEQ L+DC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 177 -NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GGLMDYA+Q+V N G+D+E+ YPY C +
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK------------YNPKYSVAN 108
Query: 236 IDGYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLI 292
G+ D+P+ EK L++AV P+SV I +F Y GI+ P S +DH VL+
Sbjct: 109 DTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLV 167
Query: 293 VGYDSEN 299
VGY E+
Sbjct: 168 VGYGFES 174
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 122/217 (56%), Gaps = 18/217 (8%)
Query: 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN 177
PA++DWR +GAVT VKDQ CG+CWAFSA G +E + L +L+EQ L+ CD++ +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 178 SGCGGGLMDYAYQFVIK--NHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV- 234
SGC GGLM+ A++++++ N + TE YPY G S + H V
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEG-----------ISPPCTTSGHTVG 109
Query: 235 -TIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIV 293
TI G+ ++P++ + V PV+V + S ++ Y+ G+ T S LDH VL+V
Sbjct: 110 ATITGHVELPQDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLV 167
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSL 330
GY+ V YWIIKNSW WG GY+ + + + L
Sbjct: 168 GYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCL 204
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 122/217 (56%), Gaps = 18/217 (8%)
Query: 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN 177
PA++DWR +GAVT VKDQ CG+CWAFSA G +E + L +L+EQ L+ CD++ +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 178 SGCGGGLMDYAYQFVIK--NHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIV- 234
SGC GGLM+ A++++++ N + TE YPY G S + H V
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEG-----------ISPPCTTSGHTVG 109
Query: 235 -TIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIV 293
TI G+ ++P++ + V PV+V + S ++ Y+ G+ T S LDH VL+V
Sbjct: 110 ATITGHVELPQDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLV 167
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSL 330
GY+ V YWIIKNSW WG GY+ + + + L
Sbjct: 168 GYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCL 204
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 108/188 (57%), Gaps = 19/188 (10%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P S+DWR+KG VT VK+Q CG+ WAFSATGA+EG TG L+SLSEQ L+DC
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 177 -NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
N GC GGLMDYA+Q+V N G+D+E+ YPY C ++ V
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-------------KYSVA 107
Query: 236 ID-GYKDVPENNEKQLLQAV-VAQPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVL 291
D G+ D+P+ EK L++AV P+SV I +F Y GI+ P S +DH VL
Sbjct: 108 NDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVL 166
Query: 292 IVGYDSEN 299
+VGY E+
Sbjct: 167 VVGYGFES 174
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 126/235 (53%), Gaps = 27/235 (11%)
Query: 119 ASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNS 178
A+ DWR VT VKDQ +CG+CWAFS+ G++E I L++LSEQEL+DC N
Sbjct: 20 AAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NY 78
Query: 179 GCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQ-CNKQKVLHFLTSFVLQLNRHIVTID 237
GC GGL++ A++ +I+ GI + DYPY A CN + I
Sbjct: 79 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRC------------TEKYGIK 126
Query: 238 GYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDS 297
Y VP+N K+ L+ + P+S+ + S+ F Y GIF G C L+HAV++VG+
Sbjct: 127 NYLSVPDNKLKEALRFL--GPISISVAVSDD-FAFYKEGIFDGECGDQLNHAVMLVGFGM 183
Query: 298 ENGVD----------YWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
+ V+ Y+IIKNSWG+ WG G+++++ + + CG+ A P
Sbjct: 184 KEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIP 238
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 125/235 (53%), Gaps = 27/235 (11%)
Query: 119 ASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNS 178
A+ DWR VT VKDQ +CG+ WAFS+ G++E I L++LSEQEL+DC N
Sbjct: 19 AAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NY 77
Query: 179 GCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQ-CNKQKVLHFLTSFVLQLNRHIVTID 237
GC GGL++ A++ +I+ GI + DYPY A CN + I
Sbjct: 78 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRC------------TEKYGIK 125
Query: 238 GYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDS 297
Y VP+N K+ L+ + P+S+ + S+ F Y GIF G C L+HAV++VG+
Sbjct: 126 NYLSVPDNKLKEALRFL--GPISISVAVSDD-FAFYKEGIFDGECGDQLNHAVMLVGFGM 182
Query: 298 ENGVD----------YWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
+ V+ Y+IIKNSWG+ WG G+++++ + + CG+ A P
Sbjct: 183 KEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIP 237
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 120/228 (52%), Gaps = 23/228 (10%)
Query: 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY 176
P DWR KGAVT+VKDQ CG+CWAFS TG +EG + G+L+SLSEQEL+DCD+
Sbjct: 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDK-M 59
Query: 177 NSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTI 236
+ C GGL AY + G++TE DY Y+G C + V I
Sbjct: 60 DKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQ------------FSAEKAKVYI 107
Query: 237 DGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGI---FTGPCSTSL-DHAVLI 292
++ +N +K P+SV I + Q Y GI CS L DHAVL+
Sbjct: 108 QDSVELSQNEQKLAAWLAKRGPISVAI--NAFGMQFYRHGISRPLRPLCSPWLIDHAVLL 165
Query: 293 VGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLAS 340
VGY + V +W IKNSWG WG GY ++ R + G CG+N +AS
Sbjct: 166 VGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGS----GACGVNTMAS 209
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 123/243 (50%), Gaps = 27/243 (11%)
Query: 111 PGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELI 170
P + + + DWR G VT VKDQA CG+CWAFS+ G++E I +L SEQEL+
Sbjct: 14 PADAKLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELV 73
Query: 171 DCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQ-CNKQKVLHFLTSFVLQL 229
DC N+GC GG + A+ +I G+ ++ DYPY + CN L+
Sbjct: 74 DCSVK-NNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCN------------LKR 120
Query: 230 NRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHA 289
TI Y +P++ K+ L+ + P+S+ I S+ F Y G + G C + +HA
Sbjct: 121 CNERYTIKSYVSIPDDKFKEALRYL--GPISISIAASDD-FAFYRGGFYDGECGAAPNHA 177
Query: 290 VLIVGYDSENGVD----------YWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLA 339
V++VGY ++ + Y+IIKNSWG WG GY++++ + C I A
Sbjct: 178 VILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEA 237
Query: 340 SYP 342
P
Sbjct: 238 YVP 240
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 147/327 (44%), Gaps = 50/327 (15%)
Query: 29 FETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKA 88
FE + K K+Y++ ++++ K F ++ +V +N G ++N +DL+ EFK
Sbjct: 8 FEEYKKAFNKSYATFEDEEAARKNFLESVKYV--QSNGG------AINHLSDLSLDEFKN 59
Query: 89 SFLGFSAASIDHDRRR---NASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFS 145
FL SA + +H + + NA + + PA ID R+ VT ++ Q CG+ WAFS
Sbjct: 60 RFL-MSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFS 118
Query: 146 ATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYP 205
A E + L+EQEL+DC + GC G + ++ I+++G+ E Y
Sbjct: 119 GVAATESAYLAYRDQSLDLAEQELVDCASQH--GCHGDTIPRGIEY-IQHNGVVQESYYR 175
Query: 206 YRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEK---QLLQAVVAQPVSVG 262
Y + C + F S Q+ P N K L Q A V +G
Sbjct: 176 YVAREQSCRRPNAQRFGISNYCQI------------YPPNANKIREALAQTHSAIAVIIG 223
Query: 263 ICGSERAFQLYSSGIFTGPCSTSLD-------HAVLIVGYDSENGVDYWIIKNSWGRSWG 315
I + AF+ Y G D HAV IVGY + GVDYWI++NSW +WG
Sbjct: 224 IKDLD-AFRHYD-----GRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWG 277
Query: 316 MNGYMHMQRNTGNSLGICGINMLASYP 342
NGY + N + M+ YP
Sbjct: 278 DNGYGYFAAN-------IDLMMIEEYP 297
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 110/232 (47%), Gaps = 22/232 (9%)
Query: 113 NLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC 172
N +VP+ +D R VT ++ Q CG+CWAFS A E + + LSEQEL+DC
Sbjct: 7 NSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC 66
Query: 173 DRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRH 232
+ GC G + +++ +N G+ E+ YPY + +C + H+ S Q+
Sbjct: 67 ASQH--GCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQRCRRPNSQHYGISNYCQI--- 120
Query: 233 IVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD--HAV 290
Y + + L Q A V +GI RAFQ Y + HAV
Sbjct: 121 ------YPPDVKQIREALTQTHTAIAVIIGI-KDLRAFQHYDGRTIIQHDNGYQPNYHAV 173
Query: 291 LIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
IVGY S G DYWI++NSW +WG +GY + Q GN+L M+ YP
Sbjct: 174 NIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQ--AGNNL-----MMIEQYP 218
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 45/246 (18%)
Query: 117 VPASIDWRKKGA---VTEVKDQASCGACWAFSATGAIEGINKIVTGSLVS--LSEQELID 171
+P S DWR V+ V++QASCG+C++F++ G +E +I+T + + LS QE++
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 172 CDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQK--------VLHFLT 223
C + Y GC GG ++ G+ E +PY G C ++ H++
Sbjct: 267 CSQ-YAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVG 325
Query: 224 SFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIF--TG- 280
F N ++ L+ V P++V + F Y GI+ TG
Sbjct: 326 GFYGGCNEALMK---------------LELVHHGPMAVAFEVYDD-FLHYKKGIYHHTGL 369
Query: 281 -----PCSTSLDHAVLIVGY--DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGIC 333
P + +HAVL+VGY DS +G+DYWI+KNSWG WG NGY ++R T C
Sbjct: 370 RDPFNPFELT-NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDE----C 424
Query: 334 GINMLA 339
I +A
Sbjct: 425 AIESIA 430
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 102/229 (44%), Gaps = 22/229 (9%)
Query: 116 DVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRS 175
+ PA ID R+ VT ++ Q CG+CWAFS A E + L+EQEL+DC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ 68
Query: 176 YNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
+ GC G + ++ I+++G+ E Y Y + C + F S Q+
Sbjct: 69 H--GCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQI------ 119
Query: 236 IDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD--HAVLIV 293
Y + L Q A V +GI + AF+ Y + HAV IV
Sbjct: 120 ---YPPNVNKIREALAQTHSAIAVIIGIKDLD-AFRHYDGRTIIQRDNGYQPNYHAVNIV 175
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
GY + GVDYWI++NSW +WG NGY + N + M+ YP
Sbjct: 176 GYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANI-------DLMMIEEYP 217
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 102/229 (44%), Gaps = 22/229 (9%)
Query: 116 DVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRS 175
+ PA ID R+ VT ++ Q CG+CWAFS A E + L+EQEL+DC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 176 YNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
+ GC G + ++ I+++G+ E Y Y + C + F S Q+
Sbjct: 69 H--GCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQI------ 119
Query: 236 IDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD--HAVLIV 293
Y + L Q A V +GI + AF+ Y + HAV IV
Sbjct: 120 ---YPPNANKIREALAQTHSAIAVIIGIKDLD-AFRHYDGRTIIQRDNGYQPNYHAVNIV 175
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
GY + GVDYWI++NSW +WG NGY + N + M+ YP
Sbjct: 176 GYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANI-------DLMMIEEYP 217
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 101/229 (44%), Gaps = 22/229 (9%)
Query: 116 DVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRS 175
+ PA ID R+ VT ++ Q CG+ WAFS A E + L+EQEL+DC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 176 YNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVT 235
+ GC G + ++ I+++G+ E Y Y + C + F S Q+
Sbjct: 69 H--GCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQI------ 119
Query: 236 IDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD--HAVLIV 293
Y + L Q A V +GI + AF+ Y + HAV IV
Sbjct: 120 ---YPPNANKIREALAQTHSAIAVIIGIKDLD-AFRHYDGRTIIQRDNGYQPNYHAVNIV 175
Query: 294 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342
GY + GVDYWI++NSW +WG NGY + N + M+ YP
Sbjct: 176 GYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANI-------DLMMIEEYP 217
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 114/239 (47%), Gaps = 31/239 (12%)
Query: 117 VPASIDWRK-KGA--VTEVKDQASCGACWAFSATGAIEGINKIVTGSLVS--LSEQELID 171
+P S DWR +G V+ V++Q SCG+C++F++ G +E +I+T + + LS QE++
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 172 CDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCN-KQKVLHFLTSFVLQLN 230
C Y GC GG ++ G+ E +PY C K+ L + +S +
Sbjct: 266 CS-PYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEYYYVG 324
Query: 231 RHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIF--TG------PC 282
N L+ V P++V F Y SGI+ TG P
Sbjct: 325 GFYGGC--------NEALMKLELVKHGPMAVAF-EVHDDFLHYHSGIYHHTGLSDPFNPF 375
Query: 283 STSLDHAVLIVGY--DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLA 339
+ +HAVL+VGY D G+DYWI+KNSWG WG +GY ++R T C I +A
Sbjct: 376 ELT-NHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDE----CAIESIA 429
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 38/234 (16%)
Query: 116 DVPASIDWRKKGAV---TEVKDQ---ASCGACWAFSATGAI-EGINKIVTGSLVS--LSE 166
D+P S DWR V + ++Q CG+CWA ++T A+ + IN G+ S LS
Sbjct: 35 DLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSV 94
Query: 167 QELIDCDRSYNSGCGGG----LMDYAYQFVIKNHGIDTEKDYPYRG---------QAGQC 213
Q +IDC + C GG + DYA+Q HGI E Y+ Q G C
Sbjct: 95 QNVIDCGNA--GSCEGGNDLSVWDYAHQ-----HGIPDETCNNYQAKDQECDKFNQCGTC 147
Query: 214 NKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLY 273
N+ K H + ++ L ++ G EK + + P+S GI +ER Y
Sbjct: 148 NEFKECHAIRNYTLWRVGDYGSLSG-------REKMMAEIYANGPISCGIMATER-LANY 199
Query: 274 SSGIFTGPCSTS-LDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNT 326
+ GI+ T+ ++H V + G+ +G +YWI++NSWG WG G++ + +T
Sbjct: 200 TGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTST 253
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 111/242 (45%), Gaps = 39/242 (16%)
Query: 116 DVPASIDWRKK----GAVTEVKDQASCGACWAFSATGAIEGINKIVTGSL--VSLSEQEL 169
++P+S D RKK ++ ++DQ+ CG+CWAF A A+ + I +G V LS +L
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 170 IDCDRSYNSGCGGGLMDYAYQFVIK----------NHG-----------IDTEKDYPYRG 208
+ C S GC GG++ A+ + +K NH T+ YP G
Sbjct: 62 LSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121
Query: 209 ----QAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGI 263
+ +C + + T + +R + + +N+EK + + ++ PV G
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYN-----VKNDEKAIQKEIMKYGPVEAGF 176
Query: 264 CGSERAFQLYSSGIFTGPCSTSL-DHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHM 322
E F Y SGI+ +L HA+ I+G+ EN YW+I NSW WG NGY +
Sbjct: 177 TVYE-DFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRI 235
Query: 323 QR 324
R
Sbjct: 236 VR 237
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 38/233 (16%)
Query: 117 VPASIDWRKKGAV---TEVKDQ---ASCGACWAFSATGAI-EGINKIVTGSLVS--LSEQ 167
+P S DWR V + ++Q CG+CWA ++T A+ + IN G+ S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 168 ELIDCDRSYNSGCGGG----LMDYAYQFVIKNHGIDTEKDYPYRG---------QAGQCN 214
+IDC + C GG + DYA+Q HGI E Y+ Q G CN
Sbjct: 61 NVIDCGNA--GSCEGGNDLSVWDYAHQ-----HGIPDETCNNYQAKDQECDKFNQCGTCN 113
Query: 215 KQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYS 274
+ K H + ++ L ++ G EK + + P+S GI +ER Y+
Sbjct: 114 EFKECHAIRNYTLWRVGDYGSLSG-------REKMMAEIYANGPISCGIMATER-LANYT 165
Query: 275 SGIFTGPCSTS-LDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNT 326
GI+ T+ ++H V + G+ +G +YWI++NSWG WG G++ + +T
Sbjct: 166 GGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTST 218
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 41/251 (16%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSL--SEQELI 170
+PAS D W + + E++DQ SCG+CWAF A AI I T + VS+ S ++L+
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 171 DCDRSY-NSGCGGGLMDYAYQFVIKN-----------------------HGIDTEKDYPY 206
C S GC GG A+ F + H ++ + P
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRP-PC 182
Query: 207 RGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICG 265
G+ K+ S + ++H GY N+EK ++ + G
Sbjct: 183 TGEGDTPKCSKICEPGYSPTYKQDKHY----GYNSYSVSNSEKDIMAEIYKNGPVEGAFS 238
Query: 266 SERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQR 324
F LY SG++ + HA+ I+G+ ENG YW++ NSW WG NG+ + R
Sbjct: 239 VYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 298
Query: 325 NTGNSLGICGI 335
+ CGI
Sbjct: 299 GQDH----CGI 305
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 101/240 (42%), Gaps = 37/240 (15%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSL--SEQELI 170
+PAS D W + + E++DQ SCG+CWAF A AI I T + VS+ S ++L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 171 DCDRSY-NSGCGGGLMDYAYQFVIKN-----------------------HGIDTEKDYPY 206
C S GC GG A+ F + H ++ + P
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRP-PC 119
Query: 207 RGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICG 265
G+ K+ S + ++H GY N+EK ++ + G
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHY----GYNSYSVSNSEKDIMAEIYKNGPVEGAFS 175
Query: 266 SERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQR 324
F LY SG++ + HA+ I+G+ ENG YW++ NSW WG NG+ + R
Sbjct: 176 VYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 235
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 41/251 (16%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSL--SEQELI 170
+PAS D W + + E++DQ SCG+CWAF A AI I T + VS+ S ++L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 171 DCDRSY-NSGCGGGLMDYAYQFVIKN-----------------------HGIDTEKDYPY 206
C S GC GG A+ F + H ++ + P
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRP-PC 121
Query: 207 RGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICG 265
G+ K+ S + ++H GY N+EK ++ + G
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHY----GYNSYSVSNSEKDIMAEIYKNGPVEGAFS 177
Query: 266 SERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQR 324
F LY SG++ + HA+ I+G+ ENG YW++ NSW WG NG+ + R
Sbjct: 178 VYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 237
Query: 325 NTGNSLGICGI 335
+ CGI
Sbjct: 238 GQDH----CGI 244
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 41/251 (16%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSL--SEQELI 170
+PAS D W + + E++DQ SCG+CWAF A AI I T + VS+ S ++L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 171 DCDRSY-NSGCGGGLMDYAYQFVIKN-----------------------HGIDTEKDYPY 206
C S GC GG A+ F + H ++ + P
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRP-PC 120
Query: 207 RGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICG 265
G+ K+ S + ++H GY N+EK ++ + G
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHY----GYNSYSVSNSEKDIMAEIYKNGPVEGAFS 176
Query: 266 SERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQR 324
F LY SG++ + HA+ I+G+ ENG YW++ NSW WG NG+ + R
Sbjct: 177 VYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 236
Query: 325 NTGNSLGICGI 335
+ CGI
Sbjct: 237 GQDH----CGI 243
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 110/263 (41%), Gaps = 47/263 (17%)
Query: 116 DVPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSL---SEQE 168
++P S D W + +++DQ SCG+CWAF A A+ I T V++ +E
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 169 LIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDY-------PY--------------- 206
L C GC GG A+ F + G+ + Y PY
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 124
Query: 207 ---RGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVG 262
G +CNK + TS+ + ++H GY ++EK+++ + G
Sbjct: 125 CTGEGDTPKCNKMCEAGYSTSY--KEDKHY----GYTSYSVSDSEKEIMAEIYKNGPVEG 178
Query: 263 ICGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMH 321
F Y SG++ + HA+ I+G+ ENGV YW++ NSW WG NG+
Sbjct: 179 AFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFK 238
Query: 322 MQRNTGNSLGICGI--NMLASYP 342
+ R + CGI ++A P
Sbjct: 239 ILRGENH----CGIESEIVAGIP 257
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 109/262 (41%), Gaps = 47/262 (17%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSL---SEQEL 169
+P S D W + +++DQ SCG+CWAF A A+ I T V++ +E L
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 170 IDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDY-------PY---------------- 206
C GC GG A+ F + G+ + Y PY
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 119
Query: 207 --RGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGI 263
G +CNK + TS+ + ++H GY ++EK+++ + G
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSY--KEDKHY----GYTSYSVSDSEKEIMAEIYKNGPVEGA 173
Query: 264 CGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHM 322
F Y SG++ + HA+ I+G+ ENGV YW++ NSW WG NG+ +
Sbjct: 174 FTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKI 233
Query: 323 QRNTGNSLGICGI--NMLASYP 342
R + CGI ++A P
Sbjct: 234 LRGENH----CGIESEIVAGIP 251
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 104/251 (41%), Gaps = 41/251 (16%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSL--SEQELI 170
+PAS D W + + E++DQ SCG+ WAF A AI I T + VS+ S ++L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 171 DCDRSY-NSGCGGGLMDYAYQFVIKNHGIDTEKDY-----------------------PY 206
C S GC GG A+ F + G+ + Y P
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 207 RGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICG 265
G+ K+ S + ++H GY N+EK ++ + G
Sbjct: 126 TGEGDTPKCSKICEPGYSPTYKQDKHY----GYNSYSVSNSEKDIMAEIYKNGPVEGAFS 181
Query: 266 SERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQR 324
F LY SG++ + HA+ I+G+ ENG YW++ NSW WG NG+ + R
Sbjct: 182 VYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 241
Query: 325 NTGNSLGICGI 335
+ CGI
Sbjct: 242 GQDH----CGI 248
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELID 171
+P+S D W + ++ DQ++CG+CWA +A A+ + G V +S +L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 172 CDRSYNSGCGGGLMDYAYQFVIKNHGI-DTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLN 230
C GC GG D A+ + + D + YP+ + + + F
Sbjct: 154 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 213
Query: 231 RHIVTIDGYKDVP------------ENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIF 278
+ T D +P + + + + P V E F Y+SG++
Sbjct: 214 KCNYTCDD-PTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVY 271
Query: 279 TGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 335
L HAV +VG+ + NGV YW I NSW WGM+GY ++R + CGI
Sbjct: 272 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 325
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELID 171
+P+S D W + ++ DQ++CG+CWA +A A+ + G V +S +L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 172 CDRSYNSGCGGGLMDYAYQFVIKNHGI-DTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLN 230
C GC GG D A+ + + D + YP+ + + + F
Sbjct: 132 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 191
Query: 231 RHIVTIDGYKDVP------------ENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIF 278
+ T D +P + + + + P V E F Y+SG++
Sbjct: 192 KCDYTCDD-PTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVY 249
Query: 279 TGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 335
L HAV +VG+ + NGV YW I NSW WGM+GY ++R + CGI
Sbjct: 250 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 303
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELID 171
+P+S D W + ++ DQ++CG+CWA +A A+ + G V +S +L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 172 CDRSYNSGCGGGLMDYAYQFVIKNHGI-DTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLN 230
C GC GG D A+ + + D + YP+ + + + F
Sbjct: 131 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 190
Query: 231 RHIVTIDGYKDVP------------ENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIF 278
+ T D +P + + + + P V E F Y+SG++
Sbjct: 191 KCNYTCDD-PTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVY 248
Query: 279 TGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 335
L HAV +VG+ + NGV YW I NSW WGM+GY ++R + CGI
Sbjct: 249 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 302
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 109/263 (41%), Gaps = 47/263 (17%)
Query: 116 DVPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSL---SEQE 168
++P S D W + +++DQ SCG+ WAF A A+ I T V++ +E
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 169 LIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDY-------PY--------------- 206
L C GC GG A+ F + G+ + Y PY
Sbjct: 122 LTCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 180
Query: 207 ---RGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVG 262
G +CNK + TS+ + ++H GY ++EK+++ + G
Sbjct: 181 CTGEGDTPKCNKMCEAGYSTSY--KEDKHY----GYTSYSVSDSEKEIMAEIYKNGPVEG 234
Query: 263 ICGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMH 321
F Y SG++ + HA+ I+G+ ENGV YW++ NSW WG NG+
Sbjct: 235 AFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFK 294
Query: 322 MQRNTGNSLGICGI--NMLASYP 342
+ R + CGI ++A P
Sbjct: 295 ILRGENH----CGIESEIVAGIP 313
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 287 DHAVLIVGY--DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
+HAVL+VGY DS +G+DYWI+KNSWG WG NGY ++R T C I +A T
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDE----CAIESIAVAAT 64
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 47/262 (17%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIV----TGSL-VSLSEQ 167
+P S D W + E++DQ SCG+CWAF GA+E I+ + G + V +S +
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAF---GAVEAISDRICIHSNGRVNVEVSAE 57
Query: 168 ELIDCDRS---------YNSGC----------GGGLMD-----YAYQFVIKNHGIDTEKD 203
+++ C + SG GGL + Y H ++ +
Sbjct: 58 DMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRP 117
Query: 204 YPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGI 263
P G+ K S + ++H Y NNEK+++ + G
Sbjct: 118 -PCTGEGDTPKCSKTCEPGYSPSYKEDKHF-GCSSYSVA--NNEKEIMAEIYKNGPVEGA 173
Query: 264 CGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHM 322
F LY SG++ + HA+ I+G+ ENG YW++ NSW WG NG+ +
Sbjct: 174 FSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKI 233
Query: 323 QRNTGNSLGICGI--NMLASYP 342
R + CGI ++A P
Sbjct: 234 LRGQDH----CGIESEIVAGMP 251
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 106/262 (40%), Gaps = 47/262 (17%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAIEGINKIV----TGSL-VSLSEQ 167
+P S D W + E++DQ SCG+CWAF GA+E I+ + G + V +S +
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAF---GAVEAISDRICIHSNGRVNVEVSAE 57
Query: 168 ELI--------------DCDRSYNSGCGGGLMD----------YAYQFVIKNHGIDTEKD 203
+++ + ++N GL+ Y H ++ +
Sbjct: 58 DMLTCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRP 117
Query: 204 YPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGI 263
P G+ K S + ++H Y NNEK+++ + G
Sbjct: 118 -PCTGEGDTPKCSKTCEPGYSPSYKEDKHF-GCSSYSVA--NNEKEIMAEIYKNGPVEGA 173
Query: 264 CGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHM 322
F LY SG++ + HA+ I+G+ ENG YW++ NSW WG NG+ +
Sbjct: 174 FSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 233
Query: 323 QRNTGNSLGICGI--NMLASYP 342
R + CGI ++A P
Sbjct: 234 LRGQDH----CGIESEIVAGMP 251
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In
Complex With Its Propeptide
Length = 106
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 27 ELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEF 86
+ F ++ + K+Y++E+EKQ+R IF++N ++ HN G S++L +N F DL+ EF
Sbjct: 23 DAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQG-YSYSLKMNHFGDLSRDEF 81
Query: 87 KASFLGFSAA 96
+ +LGF +
Sbjct: 82 RRKYLGFKKS 91
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 117 VPASIDWRKKGA---VTEVKDQASCGACWAFSATGAIEGINKIVTGSLVS--LSEQELID 171
+P S DWR V+ V++QASCG+C++F++ G +E +I+T + + LS QE++
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 172 CDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQK 217
C + Y GC GG ++ G+ E +PY G C ++
Sbjct: 61 CSQ-YAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKE 105
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 245 NNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDY 303
NNEK+++ + G F LY SG++ + HA+ I+G+ ENG Y
Sbjct: 107 NNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPY 166
Query: 304 WIIKNSWGRSWGMNGYMHMQR 324
W++ NSW WG NG+ + R
Sbjct: 167 WLVGNSWNTDWGDNGFFKILR 187
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 245 NNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDY 303
N+EK ++ + G F LY SG++ + HA+ I+G+ ENG Y
Sbjct: 106 NSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPY 165
Query: 304 WIIKNSWGRSWGMNGYMHMQR 324
W++ NSW WG NG+ + R
Sbjct: 166 WLVANSWNTDWGDNGFFKILR 186
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 303 YWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343
YW++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 41
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 26/215 (12%)
Query: 131 EVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDR-SYNSGCGGGLMDYAY 189
+V+DQ +C W F++ +E I + +S + +C + + C G +
Sbjct: 24 QVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEF 83
Query: 190 QFVIKNHG-IDTEKDYPYR--GQAGQCNKQKVLHFLTSF----VLQLNRHIVTIDG---- 238
+I+++G + E +YPY QC K + H++ + +L ++DG
Sbjct: 84 LQIIEDYGFLPAESNYPYNYVKVGEQCPKVED-HWMNLWDNGKILHNKNEPNSLDGKGYT 142
Query: 239 ------YKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAV 290
+ D + K + V+ + + +E SG + DHAV
Sbjct: 143 AYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAV 202
Query: 291 LIVGY----DSE-NGVDYWIIKNSWGRSWGMNGYM 320
IVGY +SE YWI++NSWG WG GY
Sbjct: 203 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYF 237
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 26/215 (12%)
Query: 131 EVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDR-SYNSGCGGGLMDYAY 189
+V+DQ +C W F++ +E I + +S + +C + + C G +
Sbjct: 23 QVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEF 82
Query: 190 QFVIKNHG-IDTEKDYPYR--GQAGQCNKQKVLHFLTSF----VLQLNRHIVTIDG---- 238
+I+++G + E +YPY QC K + H++ + +L ++DG
Sbjct: 83 LQIIEDYGFLPAESNYPYNYVKVGEQCPKVED-HWMNLWDNGKILHNKNEPNSLDGKGYT 141
Query: 239 ------YKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAV 290
+ D + K + V+ + + +E SG + DHAV
Sbjct: 142 AYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAV 201
Query: 291 LIVGY----DSE-NGVDYWIIKNSWGRSWGMNGYM 320
IVGY +SE YWI++NSWG WG GY
Sbjct: 202 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYF 236
>pdb|2JYE|A Chain A, Human Granulin A
Length = 72
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 359 RCSLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCL 418
+C + C G TCC S +W CC F+ AVCC DH +CCP+ + CD+ + C
Sbjct: 5 KCDMEVSCPDGYTCCRLQS-----GAWGCCPFTQAVCCEDHIHCCPAGF-TCDTQKGTCE 58
Query: 419 TRLTGNV 425
+L +
Sbjct: 59 QKLAAAL 65
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAI 150
+PAS D W + + E++DQ SCG+CWAF A AI
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|2JYT|A Chain A, Human Granulin C, Isomer 1
pdb|2JYU|A Chain A, Human Granulin C, Isomer 2
Length = 69
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 385 WKCCGFSSAVCCSDHRYCCPSNY 407
W CC AVCCSDH++CCP Y
Sbjct: 25 WGCCPIPEAVCCSDHQHCCPQGY 47
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 117 VPASID----WRKKGAVTEVKDQASCGACWAFSATGAI 150
+P S D W + E++DQ SCG+CWAF A AI
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 288 HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHM 322
HAVL VGYD E + ++ I+NSWG + G +GY M
Sbjct: 237 HAVLCVGYDDE--IRHFRIRNSWGNNVGEDGYFWM 269
>pdb|2JYV|A Chain A, Human Granulin F
Length = 72
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 366 CAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCL 418
C TCC + + SW CC A CC D +CCP CD V +C+
Sbjct: 13 CPDFSTCC-----VMVDGSWGCCPMPQASCCEDRVHCCPHG-AFCDLVHTRCI 59
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 32.0 bits (71), Expect = 0.65, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 30 ETWCK---QHGKAYSSEQEKQQRLKIFEDNYAFVTQHN---NMGNSSFTLSLNAFADLTH 83
E W + + K Y +E++ +R +I+ ++ A + +HN G ++ + +N ADLT
Sbjct: 8 EEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 84 QEF 86
+EF
Sbjct: 67 EEF 69
>pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase
pdb|2DPH|B Chain B, Crystal Structure Of Formaldehyde Dismutase
Length = 398
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 244 ENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDY 303
E+N ++L AV+ + VS ICGS+ Q G F P L H I G E G D
Sbjct: 25 EHNNRKLEHAVILKVVSTNICGSD---QHIYRGRFIVPKGHVLGHE--ITGEVVEKGSDV 79
Query: 304 WII 306
++
Sbjct: 80 ELM 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,431,671
Number of Sequences: 62578
Number of extensions: 503323
Number of successful extensions: 1405
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 151
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)