Query 012960
Match_columns 452
No_of_seqs 404 out of 2031
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.3E-80 5E-85 595.7 26.2 299 23-343 65-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 2.1E-76 4.6E-81 593.8 34.9 300 22-342 31-338 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 1.9E-75 4.1E-80 603.3 30.8 305 22-344 162-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 4.4E-73 9.5E-78 584.0 31.5 303 22-345 119-446 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 3.1E-68 6.7E-73 531.0 31.4 289 33-344 30-324 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 4.2E-55 9.2E-60 422.4 21.6 213 117-343 1-241 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 2E-54 4.4E-59 416.4 22.4 221 117-343 1-237 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 8.4E-54 1.8E-58 403.7 22.8 207 118-342 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 5.9E-54 1.3E-58 412.5 21.8 216 118-340 1-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 9.1E-53 2E-57 397.8 19.8 213 117-343 1-219 (219)
11 PTZ00364 dipeptidyl-peptidase 100.0 2.7E-51 5.9E-56 428.3 23.4 225 114-353 202-467 (548)
12 PTZ00049 cathepsin C-like prot 100.0 6.7E-51 1.4E-55 429.2 22.3 224 114-344 378-676 (693)
13 smart00645 Pept_C1 Papain fami 100.0 3.2E-47 7E-52 349.2 18.1 166 117-338 1-169 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 2.1E-44 4.6E-49 341.2 20.4 197 120-326 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 4.6E-42 1E-46 371.5 21.8 212 129-345 544-782 (1004)
16 KOG1544 Predicted cysteine pro 100.0 7.6E-41 1.6E-45 317.9 8.0 273 58-340 151-456 (470)
17 KOG4296 Epithelin/granulin [Si 100.0 1.8E-30 3.9E-35 199.4 5.0 74 360-434 1-74 (90)
18 COG4870 Cysteine protease [Pos 100.0 7E-29 1.5E-33 242.4 7.1 197 115-326 97-314 (372)
19 cd00585 Peptidase_C1B Peptidas 99.9 1E-21 2.2E-26 201.9 15.3 190 130-325 55-399 (437)
20 smart00277 GRAN Granulin. 99.9 9.4E-23 2E-27 144.8 3.5 51 361-417 1-51 (51)
21 PF00396 Granulin: Granulin; 99.7 4.9E-18 1.1E-22 117.3 1.9 43 371-419 1-43 (43)
22 PF08246 Inhibitor_I29: Cathep 99.7 8.3E-17 1.8E-21 120.5 7.1 58 29-86 1-58 (58)
23 PF03051 Peptidase_C1_2: Pepti 99.6 4.8E-14 1E-18 145.4 16.8 189 130-324 56-399 (438)
24 smart00848 Inhibitor_I29 Cathe 99.5 1.3E-14 2.7E-19 108.1 5.5 57 29-85 1-57 (57)
25 COG3579 PepC Aminopeptidase C 98.5 2.5E-07 5.5E-12 90.2 7.4 75 247-323 297-400 (444)
26 PF13529 Peptidase_C39_2: Pept 96.9 0.011 2.3E-07 51.0 10.9 57 245-310 87-144 (144)
27 PF08127 Propeptide_C1: Peptid 95.9 0.0081 1.8E-07 41.3 3.1 36 57-95 3-38 (41)
28 PF05543 Peptidase_C47: Stapho 95.5 0.2 4.4E-06 45.4 11.3 118 134-311 18-145 (175)
29 PF14399 Transpep_BrtH: NlpC/p 87.6 1.5 3.2E-05 43.7 6.8 54 247-307 78-132 (317)
30 COG4990 Uncharacterized protei 81.8 2.8 6.1E-05 38.3 5.1 52 240-311 116-168 (195)
31 KOG4128 Bleomycin hydrolases a 72.4 0.46 9.9E-06 47.2 -2.8 77 130-207 63-169 (457)
32 cd02549 Peptidase_C39A A sub-f 70.0 12 0.00026 32.0 5.9 44 250-310 70-114 (141)
33 KOG4128 Bleomycin hydrolases a 69.8 5.1 0.00011 40.1 3.7 76 246-323 305-412 (457)
34 cd00044 CysPc Calpains, domain 69.0 18 0.00038 36.3 7.6 27 286-312 235-263 (315)
35 PF09778 Guanylate_cyc_2: Guan 67.9 15 0.00033 34.7 6.3 58 246-308 112-180 (212)
36 PF12385 Peptidase_C70: Papain 58.3 1.3E+02 0.0027 27.2 9.9 37 247-298 98-135 (166)
37 cd00206 snake_toxin Snake toxi 49.7 18 0.00039 27.2 2.9 47 360-411 11-64 (64)
38 PF04885 Stig1: Stigma-specifi 43.7 25 0.00055 30.8 3.2 18 356-373 56-73 (136)
39 PF01640 Peptidase_C10: Peptid 40.3 1.1E+02 0.0024 28.2 7.2 49 248-321 141-192 (192)
40 PF14625 Lustrin_cystein: Lust 37.0 28 0.00061 23.9 2.1 18 356-373 15-32 (45)
41 PF12662 cEGF: Complement Clr- 36.9 22 0.00047 21.5 1.2 18 401-419 3-21 (24)
42 PF08139 LPAM_1: Prokaryotic m 36.8 24 0.00053 21.5 1.4 15 1-15 7-21 (25)
43 PF11567 PfUIS3: Plasmodium fa 33.6 29 0.00064 27.8 1.8 28 46-86 20-47 (101)
44 PF07438 DUF1514: Protein of u 32.0 1.2E+02 0.0025 23.0 4.6 21 1-21 1-21 (66)
45 PF15240 Pro-rich: Proline-ric 24.8 47 0.001 30.5 1.8 21 4-24 2-22 (179)
46 KOG4702 Uncharacterized conser 24.6 2.7E+02 0.0058 21.5 5.5 34 26-60 28-61 (77)
47 PF09403 FadA: Adhesion protei 23.8 1.1E+02 0.0023 26.6 3.7 35 1-37 1-37 (126)
48 PF11873 DUF3393: Domain of un 22.7 94 0.002 29.2 3.5 17 1-17 1-17 (204)
49 smart00230 CysPc Calpain-like 22.5 1.4E+02 0.003 29.9 5.0 27 286-312 227-255 (318)
50 PF05391 Lsm_interact: Lsm int 22.3 51 0.0011 19.3 1.0 12 80-91 9-20 (21)
51 PF11106 YjbE: Exopolysacchari 21.8 75 0.0016 24.9 2.1 17 1-17 1-17 (80)
52 PF07829 Toxin_14: Alpha-A con 21.3 42 0.00091 20.1 0.5 10 386-395 1-11 (26)
53 PF15588 Imm7: Immunity protei 21.1 2.6E+02 0.0056 23.6 5.6 48 289-337 17-71 (115)
54 PF13333 rve_2: Integrase core 21.0 1.8E+02 0.004 20.5 4.0 40 36-91 13-52 (52)
55 smart00289 WR1 Worm-specific r 20.6 78 0.0017 20.6 1.8 20 356-375 12-31 (38)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-80 Score=595.72 Aligned_cols=299 Identities=42% Similarity=0.781 Sum_probs=264.5
Q ss_pred hhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHHhhhhhcCcCCCcccccc
Q 012960 23 SDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDHDR 102 (452)
Q Consensus 23 ~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~fsDlt~eEf~~~~l~~~~~~~~~~~ 102 (452)
....+.|..|+.+|+|+|.+.+|...|+.||+.|+..++++++....+..+|+|+|||||+|||++++++.+.. .....
T Consensus 65 l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~-~~~~~ 143 (372)
T KOG1542|consen 65 LGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRR-GSKLP 143 (372)
T ss_pred cchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccc-cccCc
Confidence 34588999999999999999999999999999999999999988556999999999999999999999887763 11111
Q ss_pred cCCccccCCCCCCCCCCeeecCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHhCCccccChHHHhhhcCCCCCCCCC
Q 012960 103 RRNASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGG 182 (452)
Q Consensus 103 ~~~~~~~~~~~~~~lP~s~Dwr~~g~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~~~~~lS~q~lvdc~~~~~~gC~G 182 (452)
....... ......||++||||++|.||||||||+||||||||+++++|++++|++|++++||||||+||+. .++||+|
T Consensus 144 ~~~~~~~-~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~-~d~gC~G 221 (372)
T KOG1542|consen 144 GDAAEAP-IEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS-CDNGCNG 221 (372)
T ss_pred cccccCc-CCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC-cCCcCCC
Confidence 1111111 1345789999999999999999999999999999999999999999999999999999999996 5899999
Q ss_pred CchHHHHHHHHHhCCcCCCCCCCCCCCCC-CccccccccchhhhhhccccceEEeeeeEecCCChHHHHHHHHH-cCCeE
Q 012960 183 GLMDYAYQFVIKNHGIDTEKDYPYRGQAG-QCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVV-AQPVS 260 (452)
Q Consensus 183 G~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~-~gPV~ 260 (452)
|.+..||+|+++.+|+..|++|||++..+ .|...+ ....+.|++|..++ .||++|.+.|. +|||+
T Consensus 222 Gl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~------------~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~ 288 (372)
T KOG1542|consen 222 GLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK------------SKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLS 288 (372)
T ss_pred CChhHHHHHHHHhCCccccccCCccccCCCccccch------------hhceEEEeccEecC-CCHHHHHHHHHhcCCeE
Confidence 99999999988999999999999999888 898876 56778999999998 58888888776 59999
Q ss_pred EEEEcCchhhhccCCceEeC---CCCCC-CCceEEEEEEeecC-CeeEEEEEcCCCCCCCCCcEEEEEecCCCCCCcccc
Q 012960 261 VGICGSERAFQLYSSGIFTG---PCSTS-LDHAVLIVGYDSEN-GVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 335 (452)
Q Consensus 261 v~i~~~~~~f~~Y~sGiy~~---~~~~~-~~HaV~IVGyg~~~-g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI 335 (452)
|+|++ ..+|.|.+||+.+ .|+.. ++|||+|||||..+ .++|||||||||++|||+||+|+.||+| .|||
T Consensus 289 vgiNa--~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N----~CGi 362 (372)
T KOG1542|consen 289 VGINA--KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSN----ACGI 362 (372)
T ss_pred EEEch--HHHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEecccc----cccc
Confidence 99996 5799999999977 68765 89999999999987 8999999999999999999999999975 8999
Q ss_pred cccccccc
Q 012960 336 NMLASYPT 343 (452)
Q Consensus 336 ~~~~~~p~ 343 (452)
+.+++-++
T Consensus 363 ~~mvss~~ 370 (372)
T KOG1542|consen 363 ADMVSSAA 370 (372)
T ss_pred ccchhhhh
Confidence 99987554
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=2.1e-76 Score=593.83 Aligned_cols=300 Identities=37% Similarity=0.691 Sum_probs=250.0
Q ss_pred chhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHHhhhhhcCcCCCccccc
Q 012960 22 CSDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDHD 101 (452)
Q Consensus 22 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~fsDlt~eEf~~~~l~~~~~~~~~~ 101 (452)
..++..+|++||++|+|+|.+.+|+.+|+.||++|+++|++||++ +.+|++|+|+|+|||+|||++++++.........
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~ 109 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQAR-NPHARFGITKFFDLSEAEFAARYLNGAAYFAAAK 109 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccccccCCHHHHHHHhcCCCccccccc
Confidence 567888999999999999999889999999999999999999987 6799999999999999999988764221110000
Q ss_pred ccCCccccC-CCCCCCCCCeeecCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHhCCccccChHHHhhhcCCCCCCC
Q 012960 102 RRRNASVQS-PGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 180 (452)
Q Consensus 102 ~~~~~~~~~-~~~~~~lP~s~Dwr~~g~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~~~~~lS~q~lvdc~~~~~~gC 180 (452)
......+.. .....+||++||||++|+|+||||||.||||||||+++++|++++++++..++||+|||+||+. .+.||
T Consensus 110 ~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~-~~~GC 188 (348)
T PTZ00203 110 QHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH-VDNGC 188 (348)
T ss_pred ccccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC-CCCCC
Confidence 000011110 1123468999999999999999999999999999999999999999999999999999999986 47899
Q ss_pred CCCchHHHHHHHHHh--CCcCCCCCCCCCCCCC---CccccccccchhhhhhccccceEEeeeeEecCCChHHHHHHHHH
Q 012960 181 GGGLMDYAYQFVIKN--HGIDTEKDYPYRGQAG---QCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVV 255 (452)
Q Consensus 181 ~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~ 255 (452)
+||++..||+|++++ +|+++|++|||.+.++ .|.... ......++.+|..++. ++++|+++|+
T Consensus 189 ~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~-----------~~~~~~~i~~~~~i~~-~e~~~~~~l~ 256 (348)
T PTZ00203 189 GGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSS-----------ELAPGARIDGYVSMES-SERVMAAWLA 256 (348)
T ss_pred CCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCc-----------ccccceEecceeecCc-CHHHHHHHHH
Confidence 999999999999764 6789999999998766 465322 1123356788888875 6788999887
Q ss_pred c-CCeEEEEEcCchhhhccCCceEeCCCCC-CCCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEecCCCCCCcc
Q 012960 256 A-QPVSVGICGSERAFQLYSSGIFTGPCST-SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGIC 333 (452)
Q Consensus 256 ~-gPV~v~i~~~~~~f~~Y~sGiy~~~~~~-~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~C 333 (452)
+ |||+|+|++. +|++|++|||+. |.. .+||||+|||||+++|++|||||||||++|||+|||||+|+.| .|
T Consensus 257 ~~GPv~v~i~a~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n----~C 329 (348)
T PTZ00203 257 KNGPISIAVDAS--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVN----AC 329 (348)
T ss_pred hCCCEEEEEEhh--hhcCccCceeec-cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCC----cc
Confidence 5 9999999973 899999999985 653 5799999999999889999999999999999999999999864 89
Q ss_pred ccccccccc
Q 012960 334 GINMLASYP 342 (452)
Q Consensus 334 gI~~~~~~p 342 (452)
||++.++..
T Consensus 330 gi~~~~~~~ 338 (348)
T PTZ00203 330 LLTGYPVSV 338 (348)
T ss_pred cccceEEEE
Confidence 999776664
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=1.9e-75 Score=603.28 Aligned_cols=305 Identities=37% Similarity=0.670 Sum_probs=257.5
Q ss_pred chhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHHhhhhhcCcCCCcccc-
Q 012960 22 CSDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDH- 100 (452)
Q Consensus 22 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~fsDlt~eEf~~~~l~~~~~~~~~- 100 (452)
..+....|++|+++|+|+|.+.+|+.+|+.||++|+++|++||++++.+|++|+|+|+|||.|||++++++........
T Consensus 162 n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~ 241 (489)
T PTZ00021 162 NLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSN 241 (489)
T ss_pred ChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccccc
Confidence 3455578999999999999999999999999999999999999876789999999999999999999887644211000
Q ss_pred -c--ccC---C---ccccCCCCCCCCCCeeecCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHhCCccccChHHHhh
Q 012960 101 -D--RRR---N---ASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELID 171 (452)
Q Consensus 101 -~--~~~---~---~~~~~~~~~~~lP~s~Dwr~~g~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~~~~~lS~q~lvd 171 (452)
. ... . ..+. +.....+|++||||+.|.|+||||||.||||||||+++++|++++|+++..++||+|||+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~-~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVD 320 (489)
T PTZ00021 242 GKKSPRVINYDDVIKKYK-PKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVD 320 (489)
T ss_pred cccccccccccccccccc-cccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhh
Confidence 0 000 0 0011 1111224999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCCCCCC-CCCccccccccchhhhhhccccceEEeeeeEecCCChHHHH
Q 012960 172 CDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQ-AGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQL 250 (452)
Q Consensus 172 c~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~l 250 (452)
|+. .+.||+||++..||.|+++++||++|++|||.+. .+.|.... ....++|.+|..++ +++|
T Consensus 321 Cs~-~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~------------~~~~~~i~~y~~i~---~~~l 384 (489)
T PTZ00021 321 CSF-KNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDR------------CKEKYKIKSYVSIP---EDKF 384 (489)
T ss_pred hcc-CCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCcccccc------------ccccceeeeEEEec---HHHH
Confidence 996 4889999999999999988889999999999987 46786543 23346788888886 4689
Q ss_pred HHHHHc-CCeEEEEEcCchhhhccCCceEeCCCCCCCCceEEEEEEeecCC----------eeEEEEEcCCCCCCCCCcE
Q 012960 251 LQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENG----------VDYWIIKNSWGRSWGMNGY 319 (452)
Q Consensus 251 k~al~~-gPV~v~i~~~~~~f~~Y~sGiy~~~~~~~~~HaV~IVGyg~~~g----------~~yWivkNSWG~~WGe~GY 319 (452)
+++|+. |||+|+|++. .+|++|++|||++.|+..++|||+|||||++++ .+|||||||||++|||+||
T Consensus 385 k~al~~~GPVsv~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY 463 (489)
T PTZ00021 385 KEAIRFLGPISVSIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGF 463 (489)
T ss_pred HHHHHhcCCeEEEEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeE
Confidence 999985 9999999996 589999999999889888899999999997632 4799999999999999999
Q ss_pred EEEEecCCCCCCccccccccccccc
Q 012960 320 MHMQRNTGNSLGICGINMLASYPTK 344 (452)
Q Consensus 320 ~~i~r~~~~~~~~CgI~~~~~~p~~ 344 (452)
|||+|+.+...|+|||++.++||+.
T Consensus 464 ~rI~r~~~g~~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 464 IRIETDENGLMKTCSLGTEAYVPLI 488 (489)
T ss_pred EEEEcCCCCCCCCCCCcccceeEec
Confidence 9999987655679999999999974
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=4.4e-73 Score=584.01 Aligned_cols=303 Identities=35% Similarity=0.659 Sum_probs=253.3
Q ss_pred chhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHHhhhhhcCcCCCcccc-
Q 012960 22 CSDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDH- 100 (452)
Q Consensus 22 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~fsDlt~eEf~~~~l~~~~~~~~~- 100 (452)
+.++..+|++|+++|+|+|.+.+|+.+|+.||++|+++|++||. +.+|++|+|+|+|||+|||++++++...+....
T Consensus 119 e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~ 196 (448)
T PTZ00200 119 EFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNS 196 (448)
T ss_pred hHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeEEeccccccCCHHHHHHHhccCCCcccccc
Confidence 66778899999999999999999999999999999999999996 468999999999999999998876543221000
Q ss_pred --c------c-cCCccccCC--------CC----CCCCCCeeecCCCCCcccccCCC-CCcchHHHHHHHHHHHHHHHHh
Q 012960 101 --D------R-RRNASVQSP--------GN----LRDVPASIDWRKKGAVTEVKDQA-SCGACWAFSATGAIEGINKIVT 158 (452)
Q Consensus 101 --~------~-~~~~~~~~~--------~~----~~~lP~s~Dwr~~g~vtpVkdQg-~cGsCWAfA~~~alE~~~~~~~ 158 (452)
. + .....+... .. ...+|++||||+.|.|+|||||| .||||||||+++++|+++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~ 276 (448)
T PTZ00200 197 TSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYR 276 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhc
Confidence 0 0 000001000 00 12369999999999999999999 9999999999999999999999
Q ss_pred CCccccChHHHhhhcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCCCCCCCCCccccccccchhhhhhccccceEEeee
Q 012960 159 GSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDG 238 (452)
Q Consensus 159 ~~~~~lS~q~lvdc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (452)
+..+.||+|||+||+. .+.||+||++..|++|+.+ .||++|++|||.+..+.|.... ...+.|.+
T Consensus 277 ~~~~~LSeQqLvDC~~-~~~GC~GG~~~~A~~yi~~-~Gi~~e~~YPY~~~~~~C~~~~-------------~~~~~i~~ 341 (448)
T PTZ00200 277 DKSVDLSEQELVNCDT-KSQGCSGGYPDTALEYVKN-KGLSSSSDVPYLAKDGKCVVSS-------------TKKVYIDS 341 (448)
T ss_pred CCCeecCHHHHhhccC-ccCCCCCCcHHHHHHHHhh-cCccccccCCCCCCCCCCcCCC-------------CCeeEecc
Confidence 9999999999999986 4789999999999999965 4999999999999999997543 22345778
Q ss_pred eEecCCChHHHHHHHHHcCCeEEEEEcCchhhhccCCceEeCCCCCCCCceEEEEEEee--cCCeeEEEEEcCCCCCCCC
Q 012960 239 YKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDS--ENGVDYWIIKNSWGRSWGM 316 (452)
Q Consensus 239 ~~~i~~~~~~~lk~al~~gPV~v~i~~~~~~f~~Y~sGiy~~~~~~~~~HaV~IVGyg~--~~g~~yWivkNSWG~~WGe 316 (452)
|..++ ..+.|+++++.|||+|+|.+. .+|+.|++|||+++|+..++|||+|||||. ++|.+|||||||||++|||
T Consensus 342 y~~~~--~~~~l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe 418 (448)
T PTZ00200 342 YLVAK--GKDVLNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGE 418 (448)
T ss_pred eEecC--HHHHHHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCccc
Confidence 87654 345677778789999999987 689999999998889877899999999984 4688999999999999999
Q ss_pred CcEEEEEecCCCCCCcccccccccccccc
Q 012960 317 NGYMHMQRNTGNSLGICGINMLASYPTKT 345 (452)
Q Consensus 317 ~GY~~i~r~~~~~~~~CgI~~~~~~p~~~ 345 (452)
+|||||+|+.. +.|.|||++.+.||+..
T Consensus 419 ~GY~ri~r~~~-g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 419 NGYMRLERTNE-GTDKCGILTVGLTPVFY 446 (448)
T ss_pred CeeEEEEeCCC-CCCcCCccccceeeEEe
Confidence 99999999752 55799999999999863
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-68 Score=531.05 Aligned_cols=289 Identities=44% Similarity=0.783 Sum_probs=251.8
Q ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHHhhhhhcCcCCCcccccccCCccccCCC
Q 012960 33 CKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDHDRRRNASVQSPG 112 (452)
Q Consensus 33 ~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~fsDlt~eEf~~~~l~~~~~~~~~~~~~~~~~~~~~ 112 (452)
+.+|.+.|.+..|+..|+.+|.+|++.|+.||.....+|++++|+|+|+|.+|+++.+.+....... ........
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~-----~~~~~~~~ 104 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIK-----RDKFTEKL 104 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCcccc-----cccccccc
Confidence 6777888877788999999999999999999997789999999999999999999988776654431 11111123
Q ss_pred CCCCCCCeeecCCCC-CcccccCCCCCcchHHHHHHHHHHHHHHHHhC-CccccChHHHhhhcCCCCCCCCCCchHHHHH
Q 012960 113 NLRDVPASIDWRKKG-AVTEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELIDCDRSYNSGCGGGLMDYAYQ 190 (452)
Q Consensus 113 ~~~~lP~s~Dwr~~g-~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~-~~~~lS~q~lvdc~~~~~~gC~GG~~~~a~~ 190 (452)
...++|++||||++| .++||||||.||||||||++++||++++|+++ .+++||+|+|+||+...+.||+||.+..|++
T Consensus 105 ~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~~ 184 (325)
T KOG1543|consen 105 DGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAFK 184 (325)
T ss_pred chhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHHH
Confidence 356899999999997 55569999999999999999999999999999 8999999999999986688999999999999
Q ss_pred HHHHhCCcCCCCCCCCCCCCCCccccccccchhhhhhccccceEEeeeeEecCCChHHHHHHHHHc-CCeEEEEEcCchh
Q 012960 191 FVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERA 269 (452)
Q Consensus 191 ~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~~-gPV~v~i~~~~~~ 269 (452)
|+.+++++.++++|||.+..+.|..+. ....+.+.++..++.+ +++|+++|++ |||+|+|++.. +
T Consensus 185 yi~~~G~~t~~~~Ypy~~~~~~C~~~~------------~~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~ 250 (325)
T KOG1543|consen 185 YIKKNGGVTECENYPYIGKDGTCKSNK------------KDKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-D 250 (325)
T ss_pred HHHHhCCCCCCcCCCCcCCCCCccCCC------------ccceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-h
Confidence 998885555599999999999999876 2566788888888866 9999999986 89999999985 9
Q ss_pred hhccCCceEeCCCCC--CCCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEecCCCCCCcccccccccc-ccc
Q 012960 270 FQLYSSGIFTGPCST--SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASY-PTK 344 (452)
Q Consensus 270 f~~Y~sGiy~~~~~~--~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~-p~~ 344 (452)
|++|++|||.+++.+ .++|||+|||||+.++.+|||||||||+.|||+|||||.|+.+ .|+|++.++| |++
T Consensus 251 F~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~----~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 251 FSLYKGGVYAEEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVN----KCGIASEASYGPIK 324 (325)
T ss_pred hhhccCceEeCCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCC----chhhhcccccCCCC
Confidence 999999999877554 5899999999999667899999999999999999999999986 6999999998 653
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=4.2e-55 Score=422.38 Aligned_cols=213 Identities=31% Similarity=0.644 Sum_probs=175.3
Q ss_pred CCCeeecCCCC----CcccccCCCCCcchHHHHHHHHHHHHHHHHhCC------ccccChHHHhhhcCCCCCCCCCCchH
Q 012960 117 VPASIDWRKKG----AVTEVKDQASCGACWAFSATGAIEGINKIVTGS------LVSLSEQELIDCDRSYNSGCGGGLMD 186 (452)
Q Consensus 117 lP~s~Dwr~~g----~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~~------~~~lS~q~lvdc~~~~~~gC~GG~~~ 186 (452)
||++||||+.+ +|+||||||.||||||||++++||+++.|+++. .+.||+|||+||.. .+.||+||++.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~-~~~GC~GG~~~ 79 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ-YSQGCDGGFPF 79 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC-CCCCCCCCCHH
Confidence 79999999998 999999999999999999999999999998776 68999999999986 47899999999
Q ss_pred HHHHHHHHhCCcCCCCCCCCCC-CCCCccccccccchhhhhhccccceEEeeeeEecCCChHHHHHHHHHc-CCeEEEEE
Q 012960 187 YAYQFVIKNHGIDTEKDYPYRG-QAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGIC 264 (452)
Q Consensus 187 ~a~~~~~~~~Gi~~e~~yPY~~-~~~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~~-gPV~v~i~ 264 (452)
.|++|+.+ .|+++|++|||.. ..+.|...... ...+ .......+.++.. ..++++||++|++ |||+|+|+
T Consensus 80 ~a~~~~~~-~Gi~~e~~yPY~~~~~~~C~~~~~~--~~~~---~~~~~~~i~~~~~--~~~~~~ik~~i~~~GPv~v~~~ 151 (243)
T cd02621 80 LVGKFAED-FGIVTEDYFPYTADDDRPCKASPSE--CRRY---YFSDYNYVGGCYG--CTNEDEMKWEIYRNGPIVVAFE 151 (243)
T ss_pred HHHHHHHh-cCcCCCceeCCCCCCCCCCCCCccc--cccc---cccceeEcccccc--cCCHHHHHHHHHHcCCEEEEEE
Confidence 99999865 4999999999998 67788654300 0000 0011122333322 2478899999875 99999999
Q ss_pred cCchhhhccCCceEeCC-----CCC---------CCCceEEEEEEeecC--CeeEEEEEcCCCCCCCCCcEEEEEecCCC
Q 012960 265 GSERAFQLYSSGIFTGP-----CST---------SLDHAVLIVGYDSEN--GVDYWIIKNSWGRSWGMNGYMHMQRNTGN 328 (452)
Q Consensus 265 ~~~~~f~~Y~sGiy~~~-----~~~---------~~~HaV~IVGyg~~~--g~~yWivkNSWG~~WGe~GY~~i~r~~~~ 328 (452)
+. ++|++|++|||+.. |.. .++|||+|||||++. |++|||||||||++|||+|||||+|+.+
T Consensus 152 ~~-~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~- 229 (243)
T cd02621 152 VY-SDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTN- 229 (243)
T ss_pred ec-ccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCc-
Confidence 87 68999999999764 532 469999999999876 8999999999999999999999999864
Q ss_pred CCCcccccccccccc
Q 012960 329 SLGICGINMLASYPT 343 (452)
Q Consensus 329 ~~~~CgI~~~~~~p~ 343 (452)
.|||++.+.++.
T Consensus 230 ---~cgi~~~~~~~~ 241 (243)
T cd02621 230 ---ECGIESQAVFAY 241 (243)
T ss_pred ---ccCcccceEeec
Confidence 899999887654
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=2e-54 Score=416.44 Aligned_cols=221 Identities=28% Similarity=0.591 Sum_probs=181.8
Q ss_pred CCCeeecCCCC---CcccccCCC---CCcchHHHHHHHHHHHHHHHHhC---CccccChHHHhhhcCCCCCCCCCCchHH
Q 012960 117 VPASIDWRKKG---AVTEVKDQA---SCGACWAFSATGAIEGINKIVTG---SLVSLSEQELIDCDRSYNSGCGGGLMDY 187 (452)
Q Consensus 117 lP~s~Dwr~~g---~vtpVkdQg---~cGsCWAfA~~~alE~~~~~~~~---~~~~lS~q~lvdc~~~~~~gC~GG~~~~ 187 (452)
||++||||+++ +|+|||||| .||||||||++++||+++.++++ ..+.||+|||+||+. +.||+||++..
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG~~~~ 78 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPGG 78 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCcCHHH
Confidence 79999999988 999999998 89999999999999999998865 357899999999986 78999999999
Q ss_pred HHHHHHHhCCcCCCCCCCCCCCCCCccccccccchhh---hhhccccceEEeeeeEecCCChHHHHHHHHH-cCCeEEEE
Q 012960 188 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTS---FVLQLNRHIVTIDGYKDVPENNEKQLLQAVV-AQPVSVGI 263 (452)
Q Consensus 188 a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~---~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~-~gPV~v~i 263 (452)
|++|+.+ .|+++|++|||...+..|........+.. .........++++.|..++ ++++||++|. +|||+|+|
T Consensus 79 a~~~~~~-~Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i 155 (239)
T cd02698 79 VYEYAHK-HGIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGI 155 (239)
T ss_pred HHHHHHH-cCcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEE
Confidence 9999976 49999999999988777764211100000 0000123456788887775 4678888876 59999999
Q ss_pred EcCchhhhccCCceEeCC-CCCCCCceEEEEEEeecC-CeeEEEEEcCCCCCCCCCcEEEEEecC-CCCCCccccccccc
Q 012960 264 CGSERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSEN-GVDYWIIKNSWGRSWGMNGYMHMQRNT-GNSLGICGINMLAS 340 (452)
Q Consensus 264 ~~~~~~f~~Y~sGiy~~~-~~~~~~HaV~IVGyg~~~-g~~yWivkNSWG~~WGe~GY~~i~r~~-~~~~~~CgI~~~~~ 340 (452)
.+. .+|+.|++|||+.. |...++|||+|||||+++ |++|||||||||++|||+|||||+|+. ....++|||++.+.
T Consensus 156 ~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~ 234 (239)
T cd02698 156 MAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCA 234 (239)
T ss_pred Eec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceE
Confidence 997 48999999999764 455679999999999876 999999999999999999999999987 22234899999999
Q ss_pred ccc
Q 012960 341 YPT 343 (452)
Q Consensus 341 ~p~ 343 (452)
|+.
T Consensus 235 ~~~ 237 (239)
T cd02698 235 WAD 237 (239)
T ss_pred EEe
Confidence 875
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=8.4e-54 Score=403.70 Aligned_cols=207 Identities=56% Similarity=1.079 Sum_probs=185.8
Q ss_pred CCeeecCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHhCCccccChHHHhhhcCCCCCCCCCCchHHHHHHHHHhCC
Q 012960 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHG 197 (452)
Q Consensus 118 P~s~Dwr~~g~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~~~~~lS~q~lvdc~~~~~~gC~GG~~~~a~~~~~~~~G 197 (452)
|++||||+.+.++||+|||.||+|||||++++||++++++++..++||+|+|++|....+.+|.||+...|++++. +.|
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~-~~G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVK-NGG 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHH-HCC
Confidence 7899999999999999999999999999999999999999998899999999999874378999999999999875 569
Q ss_pred cCCCCCCCCCCCCCCccccccccchhhhhhccccceEEeeeeEecCCChHHHHHHHHHc-CCeEEEEEcCchhhhccCCc
Q 012960 198 IDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSG 276 (452)
Q Consensus 198 i~~e~~yPY~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~~-gPV~v~i~~~~~~f~~Y~sG 276 (452)
+++|++|||......|.... ....++|.+|..+...++++||++|++ |||+++|.+. ++|+.|++|
T Consensus 80 i~~e~~yPY~~~~~~C~~~~------------~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~G 146 (210)
T cd02248 80 LASESDYPYTGKDGTCKYNS------------SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGG 146 (210)
T ss_pred cCccccCCccCCCCCccCCC------------CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCC
Confidence 99999999999888887654 345688999999987678899999986 8999999986 689999999
Q ss_pred eEeCCCC--CCCCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccccccc
Q 012960 277 IFTGPCS--TSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 342 (452)
Q Consensus 277 iy~~~~~--~~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p 342 (452)
||+.+.. ..++|||+|||||++.+++|||||||||++||++|||||+|+. +.|||+..+.||
T Consensus 147 iy~~~~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 147 IYSGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred ceeCCCCCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 9976543 4679999999999998999999999999999999999999986 489999888776
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=5.9e-54 Score=412.49 Aligned_cols=216 Identities=31% Similarity=0.579 Sum_probs=173.5
Q ss_pred CCeeecCCC--CC--cccccCCCCCcchHHHHHHHHHHHHHHHHhC--CccccChHHHhhhcCCCCCCCCCCchHHHHHH
Q 012960 118 PASIDWRKK--GA--VTEVKDQASCGACWAFSATGAIEGINKIVTG--SLVSLSEQELIDCDRSYNSGCGGGLMDYAYQF 191 (452)
Q Consensus 118 P~s~Dwr~~--g~--vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~--~~~~lS~q~lvdc~~~~~~gC~GG~~~~a~~~ 191 (452)
|++||||++ ++ |+||+|||.||||||||++++||+++.++++ +.+.||+|||+||+...+.||+||++..||+|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 889999997 45 4599999999999999999999999999887 78899999999998743789999999999999
Q ss_pred HHHhCCcCCCCCCCCCCCCCCcccc---------ccccchhhhhh-ccccceEEeeeeEecCCChHHHHHHHHHc-CCeE
Q 012960 192 VIKNHGIDTEKDYPYRGQAGQCNKQ---------KVLHFLTSFVL-QLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVS 260 (452)
Q Consensus 192 ~~~~~Gi~~e~~yPY~~~~~~C~~~---------~~~~~~~~~~~-~~~~~~~~i~~~~~i~~~~~~~lk~al~~-gPV~ 260 (452)
+.++ |+++|++|||......|... .....+..... ......+++..+..+. .++++||++|.+ |||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeE
Confidence 9765 99999999998866543210 00000000000 0012234555666665 478899999875 9999
Q ss_pred EEEEcCchhhhccCCceEeCCCCC-CCCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEecCCCCCCcccccccc
Q 012960 261 VGICGSERAFQLYSSGIFTGPCST-SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLA 339 (452)
Q Consensus 261 v~i~~~~~~f~~Y~sGiy~~~~~~-~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~ 339 (452)
|+|.+. ++|+.|++|||+..+.. .++|||+|||||+++|++|||||||||++|||+|||||+|+. ++|||++.+
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi~~~~ 233 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS----NECGIESEV 233 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC----cccccccce
Confidence 999995 79999999999765554 468999999999989999999999999999999999999986 489999886
Q ss_pred c
Q 012960 340 S 340 (452)
Q Consensus 340 ~ 340 (452)
+
T Consensus 234 ~ 234 (236)
T cd02620 234 V 234 (236)
T ss_pred e
Confidence 5
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=9.1e-53 Score=397.76 Aligned_cols=213 Identities=49% Similarity=0.898 Sum_probs=183.5
Q ss_pred CCCeeecCCC-CCcccccCCCCCcchHHHHHHHHHHHHHHHHh-CCccccChHHHhhhcCCCCCCCCCCchHHHHHHHHH
Q 012960 117 VPASIDWRKK-GAVTEVKDQASCGACWAFSATGAIEGINKIVT-GSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIK 194 (452)
Q Consensus 117 lP~s~Dwr~~-g~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~-~~~~~lS~q~lvdc~~~~~~gC~GG~~~~a~~~~~~ 194 (452)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|....+.+|+||++..|++++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999998 788999999999999744789999999999999988
Q ss_pred hCCcCCCCCCCCCCCC-CCccccccccchhhhhhccccceEEeeeeEecCCChHHHHHHHHHc-CCeEEEEEcCchhhhc
Q 012960 195 NHGIDTEKDYPYRGQA-GQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQL 272 (452)
Q Consensus 195 ~~Gi~~e~~yPY~~~~-~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~~-gPV~v~i~~~~~~f~~ 272 (452)
+.|+++|++|||.... ..|.... ......++..|..+...++++||++|.+ |||+++|.+...+|+.
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~-----------~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~ 149 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKK-----------SNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQN 149 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSG-----------GGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHT
T ss_pred cCcccccccccccccccccccccc-----------cccccccccccccccccchhHHHHHHhhCceeeeeeecccccccc
Confidence 5699999999999877 6787654 1222578888998887789999999987 9999999998557999
Q ss_pred cCCceEeCC-CC-CCCCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEecCCCCCCcccccccccccc
Q 012960 273 YSSGIFTGP-CS-TSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 343 (452)
Q Consensus 273 Y~sGiy~~~-~~-~~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~ 343 (452)
|++|||+.+ +. ..++|||+|||||++.+++|||||||||++||++|||||+|+.+ ++|||++.++||+
T Consensus 150 ~~~gi~~~~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 150 YKSGIYDPPDCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp EESSEECSTSSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred ccceeeeccccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 999999764 54 36799999999999999999999999999999999999999875 4899999999996
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=2.7e-51 Score=428.28 Aligned_cols=225 Identities=21% Similarity=0.439 Sum_probs=179.4
Q ss_pred CCCCCCeeecCCCC---CcccccCCCC---CcchHHHHHHHHHHHHHHHHhC------CccccChHHHhhhcCCCCCCCC
Q 012960 114 LRDVPASIDWRKKG---AVTEVKDQAS---CGACWAFSATGAIEGINKIVTG------SLVSLSEQELIDCDRSYNSGCG 181 (452)
Q Consensus 114 ~~~lP~s~Dwr~~g---~vtpVkdQg~---cGsCWAfA~~~alE~~~~~~~~------~~~~lS~q~lvdc~~~~~~gC~ 181 (452)
..+||++||||++| +|+||||||. ||||||||++++||++++|+++ ..+.||+|+|+||+. +++||+
T Consensus 202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~-~n~GCd 280 (548)
T PTZ00364 202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ-YGQGCA 280 (548)
T ss_pred ccCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC-CCCCCC
Confidence 36799999999987 7999999999 9999999999999999999873 468899999999986 589999
Q ss_pred CCchHHHHHHHHHhCCcCCCCCC--CCCCCCC---CccccccccchhhhhhccccceEEeeeeEecCCChHHHHHHHHHc
Q 012960 182 GGLMDYAYQFVIKNHGIDTEKDY--PYRGQAG---QCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVA 256 (452)
Q Consensus 182 GG~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~~ 256 (452)
||++..|++|+.+ .||++|++| ||.+.++ .|..... ...........|.+|..+. +++++|+.+|++
T Consensus 281 GG~p~~A~~yi~~-~GI~tE~dY~~PY~~~dg~~~~Ck~~~~------~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~ 352 (548)
T PTZ00364 281 GGFPEEVGKFAET-FGILTTDSYYIPYDSGDGVERACKTRRP------SRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYR 352 (548)
T ss_pred CCcHHHHHHHHHh-CCcccccccCCCCCCCCCCCCCCCCCcc------cceeeeeeeEEecceeecC-CcHHHHHHHHHH
Confidence 9999999999965 599999999 9987665 4764320 0000011223455565554 467889988875
Q ss_pred -CCeEEEEEcCchhhhccCCceEeCC---------C-----------CCCCCceEEEEEEee-cCCeeEEEEEcCCCC--
Q 012960 257 -QPVSVGICGSERAFQLYSSGIFTGP---------C-----------STSLDHAVLIVGYDS-ENGVDYWIIKNSWGR-- 312 (452)
Q Consensus 257 -gPV~v~i~~~~~~f~~Y~sGiy~~~---------~-----------~~~~~HaV~IVGyg~-~~g~~yWivkNSWG~-- 312 (452)
|||+|+|++. .+|+.|++|||.+. | ...++|||+|||||+ ++|.+|||||||||+
T Consensus 353 ~GPVsVaIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~ 431 (548)
T PTZ00364 353 HGPVPASVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRR 431 (548)
T ss_pred cCCeEEEEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCC
Confidence 9999999997 68999999987521 1 134799999999996 578899999999999
Q ss_pred CCCCCcEEEEEecCCCCCCccccccccccccccCCCCCCCC
Q 012960 313 SWGMNGYMHMQRNTGNSLGICGINMLASYPTKTGQNPPPSP 353 (452)
Q Consensus 313 ~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~~~~~~p~~~~ 353 (452)
+|||+|||||+|+.| +|||++.++.... .|.|+...
T Consensus 432 ~WGE~GYfRI~RG~N----~CGIes~~v~~~~-~~~~~~~~ 467 (548)
T PTZ00364 432 SWCDGGTRKIARGVN----AYNIESEVVVMYW-APYPDVLH 467 (548)
T ss_pred CcccCCeEEEEcCCC----cccccceeeeeee-ecCCCccC
Confidence 999999999999864 8999998874433 34444433
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=6.7e-51 Score=429.22 Aligned_cols=224 Identities=25% Similarity=0.526 Sum_probs=178.8
Q ss_pred CCCCCCeeecCCC----CCcccccCCCCCcchHHHHHHHHHHHHHHHHhCC-----c-----cccChHHHhhhcCCCCCC
Q 012960 114 LRDVPASIDWRKK----GAVTEVKDQASCGACWAFSATGAIEGINKIVTGS-----L-----VSLSEQELIDCDRSYNSG 179 (452)
Q Consensus 114 ~~~lP~s~Dwr~~----g~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~~-----~-----~~lS~q~lvdc~~~~~~g 179 (452)
..+||++||||+. +.++||+|||.||||||||++++||++++|+++. . ..||+|+|+||+. ++.|
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~-~nqG 456 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF-YDQG 456 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC-CCCC
Confidence 4689999999984 6799999999999999999999999999998642 1 2799999999987 5899
Q ss_pred CCCCchHHHHHHHHHhCCcCCCCCCCCCCCCCCccccccccc---h------------------hh------hhhccccc
Q 012960 180 CGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHF---L------------------TS------FVLQLNRH 232 (452)
Q Consensus 180 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~---~------------------~~------~~~~~~~~ 232 (452)
|+||++..|++|+.+. ||++|++|||.+..+.|........ . .. ........
T Consensus 457 C~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 457 CNGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred cCCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999665 9999999999998888864321100 0 00 00001112
Q ss_pred eEEeeeeEecC-------CChHHHHHHHHHc-CCeEEEEEcCchhhhccCCceEeC-------CCCC-------------
Q 012960 233 IVTIDGYKDVP-------ENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTG-------PCST------------- 284 (452)
Q Consensus 233 ~~~i~~~~~i~-------~~~~~~lk~al~~-gPV~v~i~~~~~~f~~Y~sGiy~~-------~~~~------------- 284 (452)
.+.++.|..+. .+++++|+++|+. |||+|+|++. .+|++|++|||+. .|..
T Consensus 536 r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 536 RWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred ceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 34455565553 2468889988875 9999999996 6899999999964 2531
Q ss_pred --CCCceEEEEEEeec--CCe--eEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccccccccc
Q 012960 285 --SLDHAVLIVGYDSE--NGV--DYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 344 (452)
Q Consensus 285 --~~~HaV~IVGyg~~--~g~--~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~~ 344 (452)
.++|||+|||||.+ +|+ +|||||||||++|||+|||||+|+.+ .|||++.++|+.+
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N----~CGIEs~a~~~~p 676 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKN----FSGIESQSLFIEP 676 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCC----ccCCccceeEEee
Confidence 36999999999974 464 79999999999999999999999874 8999999999764
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=3.2e-47 Score=349.17 Aligned_cols=166 Identities=60% Similarity=1.118 Sum_probs=147.3
Q ss_pred CCCeeecCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHhCCccccChHHHhhhcCCCCCCCCCCchHHHHHHHHHhC
Q 012960 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNH 196 (452)
Q Consensus 117 lP~s~Dwr~~g~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~~~~~lS~q~lvdc~~~~~~gC~GG~~~~a~~~~~~~~ 196 (452)
||++||||+.++++||+|||.||+|||||+++++|++++++++..++||+|+|++|....+.||+||++..|++|+.++.
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999974356999999999999997656
Q ss_pred CcCCCCCCCCCCCCCCccccccccchhhhhhccccceEEeeeeEecCCChHHHHHHHHHcCCeEEEEEcCchhhhccCCc
Q 012960 197 GIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSG 276 (452)
Q Consensus 197 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~~gPV~v~i~~~~~~f~~Y~sG 276 (452)
|+++|++|||.. ++.+.+. +|++|++|
T Consensus 81 Gi~~e~~~PY~~---------------------------------------------------~~~~~~~--~f~~Y~~G 107 (174)
T smart00645 81 GLETESCYPYTG---------------------------------------------------SVAIDAS--DFQFYKSG 107 (174)
T ss_pred CcccccccCccc---------------------------------------------------EEEEEcc--cccCCcCe
Confidence 999999999975 4455543 59999999
Q ss_pred eEeC-CCCCC-CCceEEEEEEeec-CCeeEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccc
Q 012960 277 IFTG-PCSTS-LDHAVLIVGYDSE-NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINML 338 (452)
Q Consensus 277 iy~~-~~~~~-~~HaV~IVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~ 338 (452)
||+. .|... ++|+|+|||||.+ +|++|||||||||+.|||+|||||.|+.. +.|||+..
T Consensus 108 i~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~---~~c~i~~~ 169 (174)
T smart00645 108 IYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKN---NECGIEAS 169 (174)
T ss_pred EECCCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCC---CccCceee
Confidence 9976 46653 7999999999987 88999999999999999999999999852 48999544
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=2.1e-44 Score=341.24 Aligned_cols=197 Identities=35% Similarity=0.548 Sum_probs=166.8
Q ss_pred eeecCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHhC--CccccChHHHhhhcCCC----CCCCCCCchHHHHHHHH
Q 012960 120 SIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTG--SLVSLSEQELIDCDRSY----NSGCGGGLMDYAYQFVI 193 (452)
Q Consensus 120 s~Dwr~~g~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~--~~~~lS~q~lvdc~~~~----~~gC~GG~~~~a~~~~~ 193 (452)
.+|||+.+ ++||+|||.||+|||||+++++|+++.+++. ..++||+|+|++|.... ..+|.||.+..++.+++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999988 9999999999999999999999999999887 88999999999998743 26999999999998333
Q ss_pred HhCCcCCCCCCCCCCCCCCccccccccchhhhhhccccceEEeeeeEecCCChHHHHHHHHHc-CCeEEEEEcCchhhhc
Q 012960 194 KNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQL 272 (452)
Q Consensus 194 ~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~~-gPV~v~i~~~~~~f~~ 272 (452)
++.|+++|++|||......|.... ........+++..|..+...++++||++|++ |||+++|.+. ..|..
T Consensus 80 ~~~Gi~~e~~~Py~~~~~~~~~~~--------~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~ 150 (223)
T cd02619 80 ALKGIPPEEDYPYGAESDGEEPKS--------EAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDR 150 (223)
T ss_pred HHcCCCccccCCCCCCCCCCCCCC--------ccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhc
Confidence 566999999999998877765331 0001334577888988887788999999987 8999999987 68999
Q ss_pred cCCceEe------CCC-CCCCCceEEEEEEeecC--CeeEEEEEcCCCCCCCCCcEEEEEecC
Q 012960 273 YSSGIFT------GPC-STSLDHAVLIVGYDSEN--GVDYWIIKNSWGRSWGMNGYMHMQRNT 326 (452)
Q Consensus 273 Y~sGiy~------~~~-~~~~~HaV~IVGyg~~~--g~~yWivkNSWG~~WGe~GY~~i~r~~ 326 (452)
|++|+|. ..+ ...++|||+|||||++. +++|||||||||+.||++||+||+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 151 LKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred ccCccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 9999862 122 23579999999999986 899999999999999999999999985
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=371.46 Aligned_cols=212 Identities=22% Similarity=0.399 Sum_probs=159.6
Q ss_pred cccccCCCCCcchHHHHHHHHHHHHHHHHhCCccccChHHHhhhcCCC-CCCCCCCchH-HHHHHHHHhCCcCCCCCCCC
Q 012960 129 VTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMD-YAYQFVIKNHGIDTEKDYPY 206 (452)
Q Consensus 129 vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~~~~~lS~q~lvdc~~~~-~~gC~GG~~~-~a~~~~~~~~Gi~~e~~yPY 206 (452)
..||||||.||+|||||+++++|++++++++..+.||+|+|+||+..+ +.||.||+.. .++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 579999999999999999999999999999999999999999998632 6799999755 45588877767999999999
Q ss_pred CC--CCCCccccccc--cchhhhhh---c-cccceEEeeeeEecCCC----h----HHHHHHHHHc-CCeEEEEEcCchh
Q 012960 207 RG--QAGQCNKQKVL--HFLTSFVL---Q-LNRHIVTIDGYKDVPEN----N----EKQLLQAVVA-QPVSVGICGSERA 269 (452)
Q Consensus 207 ~~--~~~~C~~~~~~--~~~~~~~~---~-~~~~~~~i~~~~~i~~~----~----~~~lk~al~~-gPV~v~i~~~~~~ 269 (452)
.. ..+.|...... ........ . .....+.+.+|..+... + +++|+++|++ |||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 45678643200 00000000 0 01123344566555421 1 4688888886 9999999974 6
Q ss_pred hhccC-CceE-eCCCCC-CCCceEEEEEEeec-----CCeeEEEEEcCCCCCCCCCcEEEEEecCCCCCCcccccccccc
Q 012960 270 FQLYS-SGIF-TGPCST-SLDHAVLIVGYDSE-----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASY 341 (452)
Q Consensus 270 f~~Y~-sGiy-~~~~~~-~~~HaV~IVGyg~~-----~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~ 341 (452)
|+.|. +||| ...|+. .++|||+|||||.+ .|++|||||||||+.|||+|||||.|+. .+.|||+....+
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g---~n~CGin~i~t~ 778 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG---PSHCEDNFIHSV 778 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC---CCCCccchheee
Confidence 88884 8986 556874 57999999999964 2578999999999999999999999843 248998877666
Q ss_pred cccc
Q 012960 342 PTKT 345 (452)
Q Consensus 342 p~~~ 345 (452)
|+..
T Consensus 779 ~~fn 782 (1004)
T PTZ00462 779 VIFN 782 (1004)
T ss_pred eeEe
Confidence 6653
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=7.6e-41 Score=317.90 Aligned_cols=273 Identities=25% Similarity=0.413 Sum_probs=206.5
Q ss_pred HHHHHhccCCCCceEEecc-cCCccchHHhhhhhcCcCCCcccccccCCccccCCCCCCCCCCeeecCCC--CCcccccC
Q 012960 58 AFVTQHNNMGNSSFTLSLN-AFADLTHQEFKASFLGFSAASIDHDRRRNASVQSPGNLRDVPASIDWRKK--GAVTEVKD 134 (452)
Q Consensus 58 ~~I~~~N~~~~~s~~lg~N-~fsDlt~eEf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~Dwr~~--g~vtpVkd 134 (452)
++|++.|.- +-+|+++.- +|..||.++-.+..||..++.... ...+..+.+.....+||+.|+.|++ +++.++.|
T Consensus 151 d~iE~in~G-~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv-~nMNEi~~~l~p~~~LPE~F~As~KWp~liH~plD 228 (470)
T KOG1544|consen 151 DMIEAINQG-NYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSV-MNMNEIYTVLNPGEVLPEAFEASEKWPNLIHEPLD 228 (470)
T ss_pred HHHHHHhcC-CccccccchhhhhcccccccceeeecccCchhhh-hhHHhHhhccCcccccchhhhhhhcCCccccCccc
Confidence 478888875 788887654 899999999777778877655321 1122223323445789999999997 89999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhCC--ccccChHHHhhhcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCCCCCCC--
Q 012960 135 QASCGACWAFSATGAIEGINKIVTGS--LVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQA-- 210 (452)
Q Consensus 135 Qg~cGsCWAfA~~~alE~~~~~~~~~--~~~lS~q~lvdc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~-- 210 (452)
||+|++.|||+++++...+++|.... ...||+|+|++|.....+||+||+.+.|+-|+.+. |++...+|||...+
T Consensus 229 QgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~~ 307 (470)
T KOG1544|consen 229 QGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQAG 307 (470)
T ss_pred cCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCCC
Confidence 99999999999999999999887643 46799999999997667899999999999999665 99999999997532
Q ss_pred --CCcccccc---------ccchhhhhhccccceEEeeeeEecCCChHHHHHH-HHHcCCeEEEEEcCchhhhccCCceE
Q 012960 211 --GQCNKQKV---------LHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQ-AVVAQPVSVGICGSERAFQLYSSGIF 278 (452)
Q Consensus 211 --~~C~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~-al~~gPV~v~i~~~~~~f~~Y~sGiy 278 (452)
+.|...+. ...+++. ......++....-+++..+ |++|++ ++.+|||.+.|.+ +++|..|++|||
T Consensus 308 ~~~~C~m~sR~~grgkRqat~~CPn~-~~~Sn~iyq~tPPYrVSSn-E~eImkElM~NGPVQA~m~V-HEDFF~YkgGiY 384 (470)
T KOG1544|consen 308 PAPPCMMHSRAMGRGKRQATAHCPNS-YVNSNDIYQVTPPYRVSSN-EKEIMKELMENGPVQALMEV-HEDFFLYKGGIY 384 (470)
T ss_pred CCCCceeeccccCcccccccCcCCCc-ccccCceeeecCCeeccCC-HHHHHHHHHhCCChhhhhhh-hhhhhhhcccee
Confidence 33432221 0001111 1123355666666667644 555555 4557999987776 589999999999
Q ss_pred eCCCCC---------CCCceEEEEEEeecCC-----eeEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccccc
Q 012960 279 TGPCST---------SLDHAVLIVGYDSENG-----VDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLAS 340 (452)
Q Consensus 279 ~~~~~~---------~~~HaV~IVGyg~~~g-----~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~ 340 (452)
.....+ .+.|+|.|.|||++.+ .+|||..||||+.|||+|||||.|+.| .|.|+++..
T Consensus 385 ~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvN----ecdIEsfvI 456 (470)
T KOG1544|consen 385 SHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVN----ECDIESFVI 456 (470)
T ss_pred eccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEecccc----chhhhHhhh
Confidence 654322 4689999999998732 579999999999999999999999986 799998643
No 17
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-30 Score=199.38 Aligned_cols=74 Identities=43% Similarity=1.064 Sum_probs=72.8
Q ss_pred CCCceeeCCCCccccccCCCCccccccccCCCCceecCCCCcccCCCCCcccCCcCceecccCCCchhHHHHhhh
Q 012960 360 CSLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCLTRLTGNVTAAEAIEMR 434 (452)
Q Consensus 360 c~~~~~c~~~~tcc~~~~~~~~~~~~~cc~~~~~~cc~d~~~ccp~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~ 434 (452)
||.+++||+++||||+.+++|+|++|||||+++||||+|+.||||||||+||+.+++|++.. ++++++++++|+
T Consensus 1 Cd~~~~Cp~~~TCCcl~e~~~~cfsWgCCp~e~A~CCdD~~hCCPh~ypVCD~~~~~Cl~k~-ns~~sikal~kk 74 (90)
T KOG4296|consen 1 CDSYTECPDSETCCCLYEYGGYCFSWGCCPMESAVCCDDRSHCCPHGYPVCDLQRSTCLMKK-NSPTSIKALKKK 74 (90)
T ss_pred CCcceecCCCCceEEeeecCceeceeccccCCcceeecCCCccCCCCCcccccccceeeccC-CCcccchhhccC
Confidence 88999999999999999999999999999999999999999999999999999999999999 999999999998
No 18
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7e-29 Score=242.41 Aligned_cols=197 Identities=28% Similarity=0.398 Sum_probs=129.2
Q ss_pred CCCCCeeecCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHhCCccccChHHHhhhcC-CCCCC-----CCCCchHHH
Q 012960 115 RDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDR-SYNSG-----CGGGLMDYA 188 (452)
Q Consensus 115 ~~lP~s~Dwr~~g~vtpVkdQg~cGsCWAfA~~~alE~~~~~~~~~~~~lS~q~lvdc~~-~~~~g-----C~GG~~~~a 188 (452)
..+|+.||||+.|.|+||||||.+|+||||++++++|+.+.-.. ..++|+-.+..-.. .+..+ -+||....+
T Consensus 97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~ 174 (372)
T COG4870 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMS 174 (372)
T ss_pred ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccc
Confidence 45999999999999999999999999999999999999865433 34455544432211 11222 237777777
Q ss_pred HHHHHHhCCcCCCCCCCCCCCCCCccccccccchhhhhhccccc-eEEe-eeeEecCCChHHHHHHHHHc-CCeE--EEE
Q 012960 189 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKVLHFLTSFVLQLNRH-IVTI-DGYKDVPENNEKQLLQAVVA-QPVS--VGI 263 (452)
Q Consensus 189 ~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~~~~~~-~~~i-~~~~~i~~~~~~~lk~al~~-gPV~--v~i 263 (452)
..|+.+..|.+.|.+-||......|..... ...... ...| .....+. ...|++++.. |-++ +.|
T Consensus 175 ~a~l~e~sgpv~et~d~y~~~s~~~~~~~p--------~~k~~~~~~~i~~~~~~Ld---nG~i~~~~~~yg~~s~~~~i 243 (372)
T COG4870 175 AAYLTEWSGPVYETDDPYSENSYFSPTNLP--------VTKHVQEAQIIPSRKKYLD---NGNIKAMFGFYGAVSSSMYI 243 (372)
T ss_pred cccccccCCcchhhcCccccccccCCcCCc--------hhhccccceecccchhhhc---ccchHHHHhhhccccceeEE
Confidence 778888889999999999887666654320 000101 0111 1111122 2235555543 4333 335
Q ss_pred EcCchhhhccCCceEeCCCCCCCCceEEEEEEeec----------CCeeEEEEEcCCCCCCCCCcEEEEEecC
Q 012960 264 CGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSE----------NGVDYWIIKNSWGRSWGMNGYMHMQRNT 326 (452)
Q Consensus 264 ~~~~~~f~~Y~sGiy~~~~~~~~~HaV~IVGyg~~----------~g~~yWivkNSWG~~WGe~GY~~i~r~~ 326 (452)
++. .+....-+.|........+|||+||||||. .|.++||||||||++||++|||||++..
T Consensus 244 d~~--~~~~~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 244 DAT--NSLGICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred ecc--cccccccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 553 222222334433233567999999999986 3577999999999999999999999965
No 19
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.87 E-value=1e-21 Score=201.86 Aligned_cols=190 Identities=24% Similarity=0.384 Sum_probs=128.0
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHH-hCCccccChHHHhh----------------hcCC-----------CCCCCC
Q 012960 130 TEVKDQASCGACWAFSATGAIEGINKIV-TGSLVSLSEQELID----------------CDRS-----------YNSGCG 181 (452)
Q Consensus 130 tpVkdQg~cGsCWAfA~~~alE~~~~~~-~~~~~~lS~q~lvd----------------c~~~-----------~~~gC~ 181 (452)
.||+||+.-|.||.||+...+|..+.++ +.+.+.||+.+|.. .... ...-.+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 3899999999999999999999987764 55789999988764 1100 134578
Q ss_pred CCchHHHHHHHHHhCCcCCCCCCCCCCCCCC------------------cc----cc---------c-------------
Q 012960 182 GGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQ------------------CN----KQ---------K------------- 217 (452)
Q Consensus 182 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~------------------C~----~~---------~------------- 217 (452)
||....++..+ +++|+++.+.||-+..... .+ .. .
T Consensus 135 GGqw~m~~~li-~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLI-EKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHH-HHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 5579999999995421000 00 00 0
Q ss_pred -------c--------------c------cchhhhh--------------h--ccccceEEee-----------eeEecC
Q 012960 218 -------V--------------L------HFLTSFV--------------L--QLNRHIVTID-----------GYKDVP 243 (452)
Q Consensus 218 -------~--------------~------~~~~~~~--------------~--~~~~~~~~i~-----------~~~~i~ 243 (452)
. . .+...+. . .+..+.+.+. .|.+++
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 0 0 0000000 0 0000111111 233443
Q ss_pred CChHHHHH----HHHHcC-CeEEEEEcCchhhhccCCceEeCC----------------------CCCCCCceEEEEEEe
Q 012960 244 ENNEKQLL----QAVVAQ-PVSVGICGSERAFQLYSSGIFTGP----------------------CSTSLDHAVLIVGYD 296 (452)
Q Consensus 244 ~~~~~~lk----~al~~g-PV~v~i~~~~~~f~~Y~sGiy~~~----------------------~~~~~~HaV~IVGyg 296 (452)
.+.|+ ++|..| ||.+++++. .|+.|++||++.. +.+..+|||+|||||
T Consensus 294 ---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 294 ---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 34444 456665 999999996 5779999999643 233568999999999
Q ss_pred ec-CCe-eEEEEEcCCCCCCCCCcEEEEEec
Q 012960 297 SE-NGV-DYWIIKNSWGRSWGMNGYMHMQRN 325 (452)
Q Consensus 297 ~~-~g~-~yWivkNSWG~~WGe~GY~~i~r~ 325 (452)
.+ +|+ .||+||||||+.||++||++|+++
T Consensus 369 ~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 75 476 699999999999999999999875
No 20
>smart00277 GRAN Granulin.
Probab=99.86 E-value=9.4e-23 Score=144.83 Aligned_cols=51 Identities=41% Similarity=1.013 Sum_probs=47.9
Q ss_pred CCceeeCCCCccccccCCCCccccccccCCCCceecCCCCcccCCCCCcccCCcCce
Q 012960 361 SLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQC 417 (452)
Q Consensus 361 ~~~~~c~~~~tcc~~~~~~~~~~~~~cc~~~~~~cc~d~~~ccp~~~~~c~~~~~~c 417 (452)
|++++||+++|||++.++. ||||||++||||+|+.||||+|| +||++.++|
T Consensus 1 d~~~~Cp~~~TCC~~~~g~-----wgCCP~~~AvCC~D~~hCCP~gy-~Cd~~~~~C 51 (51)
T smart00277 1 DSATSCPDGTTCCLLPQGS-----WGCCPLPNAVCCEDGIHCCPHGY-HCDTDGGTC 51 (51)
T ss_pred CCcccCCCCCeEcCCCCCC-----EECCCCCCCCccCCCCccCCCCC-eeCCCCCcC
Confidence 5688999999999999944 99999999999999999999999 999999987
No 21
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=99.69 E-value=4.9e-18 Score=117.33 Aligned_cols=43 Identities=44% Similarity=1.121 Sum_probs=39.8
Q ss_pred ccccccCCCCccccccccCCCCceecCCCCcccCCCCCcccCCcCceec
Q 012960 371 TCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCLT 419 (452)
Q Consensus 371 tcc~~~~~~~~~~~~~cc~~~~~~cc~d~~~ccp~~~~~c~~~~~~c~~ 419 (452)
|||.+.++. ||||||++||||+|+.||||+|| +||++.++|+|
T Consensus 1 TCC~~~~g~-----~~CCP~~~avCC~D~~hCCP~G~-~C~~~~~~C~k 43 (43)
T PF00396_consen 1 TCCKTPSGG-----YGCCPYPNAVCCSDGKHCCPHGY-TCDPDGGSCIK 43 (43)
T ss_dssp EEEE-TTSS-----EEEEETSSSTTSSTTTTSSSTTS-EEECTTTEEES
T ss_pred CCcccCCCC-----ccccCCCCCCccCCCCccCCCcC-EECCCCCEEcC
Confidence 799999866 99999999999999999999999 99999999986
No 22
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.68 E-value=8.3e-17 Score=120.55 Aligned_cols=58 Identities=41% Similarity=0.777 Sum_probs=52.0
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHHh
Q 012960 29 FETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEF 86 (452)
Q Consensus 29 f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~fsDlt~eEf 86 (452)
|++|+++|+|.|.+.+|+.+|+.+|.+|++.|++||+.++.+|++|+|+|||||.+||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999999999999996669999999999999999997
No 23
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.57 E-value=4.8e-14 Score=145.44 Aligned_cols=189 Identities=26% Similarity=0.403 Sum_probs=106.6
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHhC-CccccChHHHh----------------hhcCC-----------CCCCCC
Q 012960 130 TEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELI----------------DCDRS-----------YNSGCG 181 (452)
Q Consensus 130 tpVkdQg~cGsCWAfA~~~alE~~~~~~~~-~~~~lS~q~lv----------------dc~~~-----------~~~gC~ 181 (452)
.||+||..-|.||.||+...++..+.++.+ ..+.||+.+|. +.... ...-.+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 399999999999999999999998887765 78999999875 22210 023467
Q ss_pred CCchHHHHHHHHHhCCcCCCCCCCCCCCCC---------------------------C----------------------
Q 012960 182 GGLMDYAYQFVIKNHGIDTEKDYPYRGQAG---------------------------Q---------------------- 212 (452)
Q Consensus 182 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~---------------------------~---------------------- 212 (452)
||....+...+ +++||++.+.||-+.... .
T Consensus 136 GGqw~~~~nli-~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLI-KKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHH-HHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHH-HHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877 556999999998542100 0
Q ss_pred ----ccccccc------------cchhh--h----hh----------------ccccceEEee-----------eeEecC
Q 012960 213 ----CNKQKVL------------HFLTS--F----VL----------------QLNRHIVTID-----------GYKDVP 243 (452)
Q Consensus 213 ----C~~~~~~------------~~~~~--~----~~----------------~~~~~~~~i~-----------~~~~i~ 243 (452)
.+..-.. ...++ + .. .+..+.+.+. .|.+++
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 0000000 00000 0 00 0000111111 133333
Q ss_pred CChHHHHHH----HHHcC-CeEEEEEcCchhhhccCCceEeCCC----------------------CCCCCceEEEEEEe
Q 012960 244 ENNEKQLLQ----AVVAQ-PVSVGICGSERAFQLYSSGIFTGPC----------------------STSLDHAVLIVGYD 296 (452)
Q Consensus 244 ~~~~~~lk~----al~~g-PV~v~i~~~~~~f~~Y~sGiy~~~~----------------------~~~~~HaV~IVGyg 296 (452)
.+.|++ +|..| ||..+-++. . +...+.||.+... .+..+|||+|||.+
T Consensus 295 ---id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~ 369 (438)
T PF03051_consen 295 ---IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVD 369 (438)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEE
Confidence 344444 45667 999999996 3 4466888875421 01358999999999
Q ss_pred e-cCCe-eEEEEEcCCCCCCCCCcEEEEEe
Q 012960 297 S-ENGV-DYWIIKNSWGRSWGMNGYMHMQR 324 (452)
Q Consensus 297 ~-~~g~-~yWivkNSWG~~WGe~GY~~i~r 324 (452)
. ++|+ .+|+|+||||+..|.+|||.|+.
T Consensus 370 ~D~~g~p~~wkVeNSWG~~~g~kGy~~msd 399 (438)
T PF03051_consen 370 LDEDGKPVRWKVENSWGTDNGDKGYFYMSD 399 (438)
T ss_dssp E-TTSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred eccCCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence 6 5665 69999999999999999999975
No 24
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.52 E-value=1.3e-14 Score=108.10 Aligned_cols=57 Identities=51% Similarity=0.912 Sum_probs=54.2
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHH
Q 012960 29 FETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQE 85 (452)
Q Consensus 29 f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~fsDlt~eE 85 (452)
|++|+++|+|.|.+.+|+..|+.+|.+|++.|+.||+.++.+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999999999876689999999999999986
No 25
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.50 E-value=2.5e-07 Score=90.23 Aligned_cols=75 Identities=27% Similarity=0.459 Sum_probs=53.4
Q ss_pred HHHHHHH----HHcC-CeEEEEEcCchhhhccCCceEeCC---C----C---------------CCCCceEEEEEEee-c
Q 012960 247 EKQLLQA----VVAQ-PVSVGICGSERAFQLYSSGIFTGP---C----S---------------TSLDHAVLIVGYDS-E 298 (452)
Q Consensus 247 ~~~lk~a----l~~g-PV~v~i~~~~~~f~~Y~sGiy~~~---~----~---------------~~~~HaV~IVGyg~-~ 298 (452)
.+.+|++ +..| +|-.+-++. .+..-+.||.+.. . + +-..|||+|.|.+. +
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 4556664 3346 998888875 4666677776321 0 0 01369999999994 4
Q ss_pred CCe-eEEEEEcCCCCCCCCCcEEEEE
Q 012960 299 NGV-DYWIIKNSWGRSWGMNGYMHMQ 323 (452)
Q Consensus 299 ~g~-~yWivkNSWG~~WGe~GY~~i~ 323 (452)
+|. --|.|.||||.+=|.+|||-++
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred CCCceeeEeecccccccCCCceEeeh
Confidence 443 4699999999999999999876
No 26
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.93 E-value=0.011 Score=51.05 Aligned_cols=57 Identities=26% Similarity=0.454 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHcC-CeEEEEEcCchhhhccCCceEeCCCCCCCCceEEEEEEeecCCeeEEEEEcCC
Q 012960 245 NNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSW 310 (452)
Q Consensus 245 ~~~~~lk~al~~g-PV~v~i~~~~~~f~~Y~sGiy~~~~~~~~~HaV~IVGyg~~~g~~yWivkNSW 310 (452)
.+.+.|++.|.+| ||.+.+....... .++.+. ....+|.|+|+||+++. +++|-.+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~---~~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD---GTYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE---E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC---CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 4678899999987 9999997431111 111221 12468999999999853 78888777
No 27
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=95.94 E-value=0.0081 Score=41.35 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=23.4
Q ss_pred HHHHHHhccCCCCceEEecccCCccchHHhhhhhcCcCC
Q 012960 57 YAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSA 95 (452)
Q Consensus 57 ~~~I~~~N~~~~~s~~lg~N~fsDlt~eEf~~~~l~~~~ 95 (452)
-++|+.+|+. +.+|++|.| |.+.|.+.++.+ +|..+
T Consensus 3 de~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~L-lGv~~ 38 (41)
T PF08127_consen 3 DEFIDYINSK-NTTWKAGRN-FENTSIEYIKRL-LGVLP 38 (41)
T ss_dssp HHHHHHHHHC-T-SEEE-----SSB-HHHHHHC-S-B-T
T ss_pred HHHHHHHHcC-CCcccCCCC-CCCCCHHHHHHH-cCCCC
Confidence 3689999998 999999999 899999998775 66554
No 28
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=95.55 E-value=0.2 Score=45.44 Aligned_cols=118 Identities=14% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHH--------HHhCCccccChHHHhhhcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCC
Q 012960 134 DQASCGACWAFSATGAIEGINK--------IVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYP 205 (452)
Q Consensus 134 dQg~cGsCWAfA~~~alE~~~~--------~~~~~~~~lS~q~lvdc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP 205 (452)
.||.=+=|-+|+.++.|-.... +.+.-...+|+++|.+++. .+...++|... .|....
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~---------~~~~~i~y~ks-~g~~~~---- 83 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL---------TPNQMIKYAKS-QGRNPQ---- 83 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B----------HHHHHHHHHH-TTEEEE----
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC---------CHHHHHHHHHH-cCcchh----
Confidence 4888899999999998876421 1122245677888876653 24566777533 243210
Q ss_pred CCCCCCCccccccccchhhhhhccccceEEeeeeEecCCChHHHHHHHHHc-CCeEEEEEcCchhhhccCCceEeCCCCC
Q 012960 206 YRGQAGQCNKQKVLHFLTSFVLQLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCST 284 (452)
Q Consensus 206 Y~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~lk~al~~-gPV~v~i~~~~~~f~~Y~sGiy~~~~~~ 284 (452)
--... .+.+++++.+.+ -|+.+..+.... ..+.
T Consensus 84 --------------------------------~~n~~--~s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~ 117 (175)
T PF05543_consen 84 --------------------------------YNNRM--PSFDEVKKLIDNNKGIAILADRVEQ------------TNGP 117 (175)
T ss_dssp --------------------------------EECS-----HHHHHHHHHTT-EEEEEEEETTS------------CTTB
T ss_pred --------------------------------HhcCC--CCHHHHHHHHHcCCCeEEEeccccc------------CCCC
Confidence 00111 145678888776 488776654321 1233
Q ss_pred CCCceEEEEEEee-cCCeeEEEEEcCCC
Q 012960 285 SLDHAVLIVGYDS-ENGVDYWIIKNSWG 311 (452)
Q Consensus 285 ~~~HaV~IVGyg~-~~g~~yWivkNSWG 311 (452)
..+|||+||||-. .+|.++.++=|=|-
T Consensus 118 ~~gHAlavvGya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 118 HAGHALAVVGYAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp --EEEEEEEEEEEETTSEEEEEEE-TT-
T ss_pred ccceeEEEEeeeecCCCCeEEEEeCCcc
Confidence 5689999999987 56789999977764
No 29
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=87.61 E-value=1.5 Score=43.70 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=35.8
Q ss_pred HHHHHHHHHcC-CeEEEEEcCchhhhccCCceEeCCCCCCCCceEEEEEEeecCCeeEEEEE
Q 012960 247 EKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIK 307 (452)
Q Consensus 247 ~~~lk~al~~g-PV~v~i~~~~~~f~~Y~sGiy~~~~~~~~~HaV~IVGyg~~~g~~yWivk 307 (452)
.+.|+++|.+| ||.+.++.. +..|...-|. ....+|.|+|+||++++ ..+.++-
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~~---~~~~~H~i~v~G~d~~~-~~~~v~D 132 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYYK---KHHADHYIVVYGYDEEE-DVFYVSD 132 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCccccc---cccCCcEEEEEEEeCCC-CEEEEEc
Confidence 45778888888 999998764 3334433221 12458999999999864 3466653
No 30
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.82 E-value=2.8 Score=38.29 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=37.2
Q ss_pred EecCCChHHHHHHHHHcC-CeEEEEEcCchhhhccCCceEeCCCCCCCCceEEEEEEeecCCeeEEEEEcCCC
Q 012960 240 KDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 311 (452)
Q Consensus 240 ~~i~~~~~~~lk~al~~g-PV~v~i~~~~~~f~~Y~sGiy~~~~~~~~~HaV~IVGyg~~~g~~yWivkNSWG 311 (452)
.++...+..+|+..|.+| ||.+-... |.. ..-|+|+|.|||+. ++..-++||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeeccccc----ceEeccccc
Confidence 456667899999999886 98764432 322 33699999999974 566667775
No 31
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=72.40 E-value=0.46 Score=47.21 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=51.5
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHh-CCccccChHHHhh--------------------hcCC---------CCCC
Q 012960 130 TEVKDQASCGACWAFSATGAIEGINKIVT-GSLVSLSEQELID--------------------CDRS---------YNSG 179 (452)
Q Consensus 130 tpVkdQg~cGsCWAfA~~~alE~~~~~~~-~~~~~lS~q~lvd--------------------c~~~---------~~~g 179 (452)
+||.||..-|-||.|+.+..+---+..+- -..+.||..+|+- |..- .+.-
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 69999999999999999987754333322 2356677776632 1110 1334
Q ss_pred CCCCchHHHHHHHHHhCCcCCCCCCCCC
Q 012960 180 CGGGLMDYAYQFVIKNHGIDTEKDYPYR 207 (452)
Q Consensus 180 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~ 207 (452)
-+||....-++.+ +++|+.+.++||-.
T Consensus 143 ~DGGqw~MfvNlV-kKYGviPKkcy~~s 169 (457)
T KOG4128|consen 143 PDGGQWQMFVNLV-KKYGVIPKKCYLHS 169 (457)
T ss_pred CCCchHHHHHHHH-HHhCCCcHHhcccc
Confidence 5688777666665 56799999999743
No 32
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=70.00 E-value=12 Score=32.00 Aligned_cols=44 Identities=27% Similarity=0.420 Sum_probs=28.9
Q ss_pred HHHHHHcC-CeEEEEEcCchhhhccCCceEeCCCCCCCCceEEEEEEeecCCeeEEEEEcCC
Q 012960 250 LLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSW 310 (452)
Q Consensus 250 lk~al~~g-PV~v~i~~~~~~f~~Y~sGiy~~~~~~~~~HaV~IVGyg~~~g~~yWivkNSW 310 (452)
+++.+..| ||.+.+... + .....+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---~-----------~~~~~gH~vVv~g~~~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---V-----------SITPSGHAMVVIGYDR---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---c-----------ccCCCCeEEEEEEEcC---CCCEEEECCC
Confidence 66777776 998877541 0 1124589999999982 1235666665
No 33
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=69.77 E-value=5.1 Score=40.07 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=50.4
Q ss_pred hHHHHHHHHH---c-C-CeEEEEEcCchhhhccCCceEeC-----C-------CC-C----------CCCceEEEEEEe-
Q 012960 246 NEKQLLQAVV---A-Q-PVSVGICGSERAFQLYSSGIFTG-----P-------CS-T----------SLDHAVLIVGYD- 296 (452)
Q Consensus 246 ~~~~lk~al~---~-g-PV~v~i~~~~~~f~~Y~sGiy~~-----~-------~~-~----------~~~HaV~IVGyg- 296 (452)
+.+.|++.++ + + ||-.+-+.. .+..-++|+.+- + .. + -..|||+|.|-+
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~~--k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~ 382 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDIR--KAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGL 382 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEecccH--hhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccc
Confidence 3566776654 2 3 888777763 456667775421 1 00 1 136999998888
Q ss_pred ec---CCeeEEEEEcCCCCCCCCCcEEEEE
Q 012960 297 SE---NGVDYWIIKNSWGRSWGMNGYMHMQ 323 (452)
Q Consensus 297 ~~---~g~~yWivkNSWG~~WGe~GY~~i~ 323 (452)
.+ ++-.-|-|.||||++-|.+||..|.
T Consensus 383 kd~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 383 KDPATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred cCcccCCchhhhhhchhhhhccccchhhhh
Confidence 22 3445799999999999999996653
No 34
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=68.98 E-value=18 Score=36.26 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=24.0
Q ss_pred CCceEEEEEEeecC--CeeEEEEEcCCCC
Q 012960 286 LDHAVLIVGYDSEN--GVDYWIIKNSWGR 312 (452)
Q Consensus 286 ~~HaV~IVGyg~~~--g~~yWivkNSWG~ 312 (452)
.+||-.|++....+ |.....+||-||.
T Consensus 235 ~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEEccCceEEEEecCCccC
Confidence 48999999998766 8899999999995
No 35
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=67.90 E-value=15 Score=34.65 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=33.1
Q ss_pred hHHHHHHHHHcC-CeEEEEEcCchhhhc---cCCceEeC---C----CCCCCCceEEEEEEeecCCeeEEEEEc
Q 012960 246 NEKQLLQAVVAQ-PVSVGICGSERAFQL---YSSGIFTG---P----CSTSLDHAVLIVGYDSENGVDYWIIKN 308 (452)
Q Consensus 246 ~~~~lk~al~~g-PV~v~i~~~~~~f~~---Y~sGiy~~---~----~~~~~~HaV~IVGyg~~~g~~yWivkN 308 (452)
..++|...|+.| |+.|-++.. +.. -+.-.... . .....+|-|+|+||+.+.+. ++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~---~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~~--~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS---LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATKE--FEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc---cccChhhcccccccccccccCCCCCccEEEEEEEeecCCCCe--EEEeC
Confidence 467888888875 666555543 111 02222211 1 12356999999999976433 55554
No 36
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=58.30 E-value=1.3e+02 Score=27.25 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=25.9
Q ss_pred HHHHHHHHHc-CCeEEEEEcCchhhhccCCceEeCCCCCCCCceEEEEEEeec
Q 012960 247 EKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSE 298 (452)
Q Consensus 247 ~~~lk~al~~-gPV~v~i~~~~~~f~~Y~sGiy~~~~~~~~~HaV~IVGyg~~ 298 (452)
.+.+...|.+ ||+-|++.... ..-..|+++|.|-+.+
T Consensus 98 ~e~~~~LL~~yGPLwv~~~~P~---------------~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 98 AEGLANLLREYGPLWVAWEAPG---------------DSWVAHASVITGIDGD 135 (166)
T ss_pred HHHHHHHHHHcCCeEEEecCCC---------------CcceeeEEEEEeecCC
Confidence 4667777765 99999865432 1234799999998754
No 37
>cd00206 snake_toxin Snake toxin domain, present in short and long neurotoxins, cytotoxins and short toxins, and in other miscellaneous venom peptides. The toxin acts by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and preventing the binding of acetylcholine, thereby blocking the excitation of muscles. This domain contains 60-75 amino acids that are fixed by 4-5 disulfide bridges and is nearly all beta sheet; it exists as either monomers or dimers.
Probab=49.74 E-value=18 Score=27.18 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=30.5
Q ss_pred CCCceeeCCCCcccccc---C-CCCccccccc---cCCCCceecCCCCcccCCCCCccc
Q 012960 360 CSLLTYCAAGETCCCGS---S-ILGICLSWKC---CGFSSAVCCSDHRYCCPSNYPICD 411 (452)
Q Consensus 360 c~~~~~c~~~~tcc~~~---~-~~~~~~~~~c---c~~~~~~cc~d~~~ccp~~~~~c~ 411 (452)
|.....||+|++-|-.. . ..|+=..+|| ||-+..- ..+.||..|. ||
T Consensus 11 ~~~~~tC~~ge~~Cyk~~~~~~~~g~~i~rGCa~tCP~~~~~---~~v~CC~TD~--CN 64 (64)
T cd00206 11 PFTTETCPDGENICYKKSWKDTPRGVRIERGCAATCPKVKPG---EYVTCCTTDK--CN 64 (64)
T ss_pred CCcceeCCcccCccceeEEEcCCCCCEEEccccCcCcCCCCC---cceEecCCCC--CC
Confidence 55567899988888432 1 2344577888 7765442 3568888774 64
No 38
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=43.70 E-value=25 Score=30.84 Aligned_cols=18 Identities=44% Similarity=0.990 Sum_probs=11.7
Q ss_pred CCccCCCceeeCCCCccc
Q 012960 356 GPTRCSLLTYCAAGETCC 373 (452)
Q Consensus 356 ~p~~c~~~~~c~~~~tcc 373 (452)
.|..|.....++.+.+||
T Consensus 56 ~~~iC~~~~~~~~~~~CC 73 (136)
T PF04885_consen 56 DPWICSAKGKCSPGPTCC 73 (136)
T ss_pred CchhhcCCCCCCCCCccc
Confidence 344676666667777777
No 39
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=40.28 E-value=1.1e+02 Score=28.23 Aligned_cols=49 Identities=37% Similarity=0.676 Sum_probs=29.1
Q ss_pred HHHHHHHHcC-CeEEEEEcCchhhhccCCceEeCCCCCCCCceEEEEEEeecCCeeEEEEEcCCCCCCC--CCcEEE
Q 012960 248 KQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWG--MNGYMH 321 (452)
Q Consensus 248 ~~lk~al~~g-PV~v~i~~~~~~f~~Y~sGiy~~~~~~~~~HaV~IVGyg~~~g~~yWivkNSWG~~WG--e~GY~~ 321 (452)
+.|+..|.+| ||.+.-... ..+||.+|=||..+ .|+-+ -|| || .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~------------------~~GHawViDGy~~~---~~~H~--NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK------------------SGGHAWVIDGYDSD---GYFHC--NWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET------------------TEEEEEEEEEEESS---SEEEE--E-S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC------------------CCCeEEEEcCccCC---CeEEE--eeC--ccCCCCCccC
Confidence 4566677765 987654321 11899999999643 46655 355 44 468875
No 40
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=37.04 E-value=28 Score=23.88 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=14.1
Q ss_pred CCccCCCceeeCCCCccc
Q 012960 356 GPTRCSLLTYCAAGETCC 373 (452)
Q Consensus 356 ~p~~c~~~~~c~~~~tcc 373 (452)
.+..|+....||.+.+|=
T Consensus 15 ~~~~C~~~~~CP~~y~C~ 32 (45)
T PF14625_consen 15 QPVSCSPDNSCPSGYSCH 32 (45)
T ss_pred CeeECcCCCCCCCcCEee
Confidence 345797777899999984
No 41
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=36.86 E-value=22 Score=21.50 Aligned_cols=18 Identities=28% Similarity=0.748 Sum_probs=13.2
Q ss_pred cc-cCCCCCcccCCcCceec
Q 012960 401 YC-CPSNYPICDSVRHQCLT 419 (452)
Q Consensus 401 ~c-cp~~~~~c~~~~~~c~~ 419 (452)
+| ||.|| .=+.....|..
T Consensus 3 ~C~C~~Gy-~l~~d~~~C~D 21 (24)
T PF12662_consen 3 TCSCPPGY-QLSPDGRSCED 21 (24)
T ss_pred EeeCCCCC-cCCCCCCcccc
Confidence 56 99999 76667677754
No 42
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=36.84 E-value=24 Score=21.54 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=10.3
Q ss_pred CchHHHHHHHHHHHh
Q 012960 1 MNSLAFFLLSILLLS 15 (452)
Q Consensus 1 M~~~l~~l~~~l~~~ 15 (452)
|+++++.+++++.++
T Consensus 7 mKkil~~l~a~~~La 21 (25)
T PF08139_consen 7 MKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHh
Confidence 378877777776554
No 43
>PF11567 PfUIS3: Plasmodium falciparum UIS3 membrane protein; InterPro: IPR021626 UIS3 is a membrane protein essential for sporozoite development in infected hepatocytes. This family is 130-229 of the Plasmodium falciparum UIS3 protein which is compact and has an all alpha-helical structure.PfUIS3(130-229) interacts with lipids, phospholipid lysosomes, the human liver fatty acid-binding protein and with the lipid phosphatidylethanolamine. The interaction with liver fatty acid-binding protein provides the parasite with a method to import essential fatty acids/lipids during rapid growth phases of sporozoites []. ; PDB: 2VWA_C.
Probab=33.65 E-value=29 Score=27.79 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHHh
Q 012960 46 KQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEF 86 (452)
Q Consensus 46 ~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~fsDlt~eEf 86 (452)
-.+||.+|.+|.+...+| +|++|+.+.-
T Consensus 20 piKrfN~F~Dn~rla~qh-------------HF~~LSn~Qq 47 (101)
T PF11567_consen 20 PIKRFNIFMDNARLAAQH-------------HFSNLSNEQQ 47 (101)
T ss_dssp -HHHHHHHHHHHHHHHHH-------------HHHHS-HHHH
T ss_pred cHHHHHHHHHHHHHHHHH-------------HHHhcCcHHH
Confidence 578999999999987777 5788887754
No 44
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=32.03 E-value=1.2e+02 Score=23.01 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=12.7
Q ss_pred CchHHHHHHHHHHHhhCCCCC
Q 012960 1 MNSLAFFLLSILLLSSLPLNY 21 (452)
Q Consensus 1 M~~~l~~l~~~l~~~~~~~~~ 21 (452)
|+-++..+|+++++.++..+.
T Consensus 1 MWIiiSIvLai~lLI~l~~ns 21 (66)
T PF07438_consen 1 MWIIISIVLAIALLISLSVNS 21 (66)
T ss_pred ChhhHHHHHHHHHHHHHhhhH
Confidence 677666666666665555443
No 45
>PF15240 Pro-rich: Proline-rich
Probab=24.83 E-value=47 Score=30.47 Aligned_cols=21 Identities=29% Similarity=0.148 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhCCCCCchh
Q 012960 4 LAFFLLSILLLSSLPLNYCSD 24 (452)
Q Consensus 4 ~l~~l~~~l~~~~~~~~~~~~ 24 (452)
||+||.++||+++.+...+++
T Consensus 2 LlVLLSvALLALSSAQ~~dEd 22 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDED 22 (179)
T ss_pred hhHHHHHHHHHhhhccccccc
Confidence 344555555555555554333
No 46
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.56 E-value=2.7e+02 Score=21.53 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHH
Q 012960 26 NELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFV 60 (452)
Q Consensus 26 ~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I 60 (452)
...|++|..+|.+.-..+ |..+|..-|++-++.-
T Consensus 28 pe~Fee~v~~~krel~pp-e~~~~~EE~~~~lRe~ 61 (77)
T KOG4702|consen 28 PEIFEEFVRGYKRELSPP-EATKRKEEYENFLREQ 61 (77)
T ss_pred hHHHHHHHHhccccCCCh-HHHhhHHHHHHHHHHH
Confidence 357999999999987654 6677777777665543
No 47
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=23.83 E-value=1.1e+02 Score=26.58 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=6.7
Q ss_pred CchHHHHHHHHHHHhhCCCCCc--hhHHHHHHHHHHHhC
Q 012960 1 MNSLAFFLLSILLLSSLPLNYC--SDINELFETWCKQHG 37 (452)
Q Consensus 1 M~~~l~~l~~~l~~~~~~~~~~--~~~~~~f~~~~~~~~ 37 (452)
|++++++ .+|+++++.+..+ .++...++.--.+|+
T Consensus 1 MKK~ll~--~~lllss~sfaA~~~~~v~~~l~~LEae~q 37 (126)
T PF09403_consen 1 MKKILLL--GMLLLSSISFAATATASVESELNQLEAEYQ 37 (126)
T ss_dssp ------------------------HHHHHHHHHHHHHHH
T ss_pred ChHHHHH--HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 8886533 4455555555542 244444444444443
No 48
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=22.70 E-value=94 Score=29.24 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHHHhhC
Q 012960 1 MNSLAFFLLSILLLSSL 17 (452)
Q Consensus 1 M~~~l~~l~~~l~~~~~ 17 (452)
|++++++++++|+.++.
T Consensus 1 ~k~l~~~~~~~lL~~Cs 17 (204)
T PF11873_consen 1 KKKLLLLLIALLLSGCS 17 (204)
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 77777776666666655
No 49
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=22.53 E-value=1.4e+02 Score=29.93 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=22.0
Q ss_pred CCceEEEEEEeecCCee--EEEEEcCCCC
Q 012960 286 LDHAVLIVGYDSENGVD--YWIIKNSWGR 312 (452)
Q Consensus 286 ~~HaV~IVGyg~~~g~~--yWivkNSWG~ 312 (452)
.+||-.|++...-++.+ -..+||-||.
T Consensus 227 ~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 48999999988655545 8999999993
No 50
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=22.32 E-value=51 Score=19.25 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=9.6
Q ss_pred ccchHHhhhhhc
Q 012960 80 DLTHQEFKASFL 91 (452)
Q Consensus 80 Dlt~eEf~~~~l 91 (452)
-+++++|++++|
T Consensus 9 p~SNddFrkmfl 20 (21)
T PF05391_consen 9 PKSNDDFRKMFL 20 (21)
T ss_pred ccchHHHHHHHc
Confidence 467889998876
No 51
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=21.83 E-value=75 Score=24.92 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=12.9
Q ss_pred CchHHHHHHHHHHHhhC
Q 012960 1 MNSLAFFLLSILLLSSL 17 (452)
Q Consensus 1 M~~~l~~l~~~l~~~~~ 17 (452)
|+|++..+++++++.+.
T Consensus 1 MKK~~~~~~~i~~l~~~ 17 (80)
T PF11106_consen 1 MKKIIYGLFAILALASS 17 (80)
T ss_pred ChhHHHHHHHHHHHHhc
Confidence 99988878777776544
No 52
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=21.30 E-value=42 Score=20.07 Aligned_cols=10 Identities=40% Similarity=1.354 Sum_probs=5.8
Q ss_pred ccc-CCCCcee
Q 012960 386 KCC-GFSSAVC 395 (452)
Q Consensus 386 ~cc-~~~~~~c 395 (452)
||| |||+|.|
T Consensus 1 gccg~ypnaac 11 (26)
T PF07829_consen 1 GCCGPYPNAAC 11 (26)
T ss_dssp --STTSSSSS-
T ss_pred CCccCCCCccc
Confidence 455 6899998
No 53
>PF15588 Imm7: Immunity protein 7
Probab=21.13 E-value=2.6e+02 Score=23.62 Aligned_cols=48 Identities=27% Similarity=0.479 Sum_probs=30.1
Q ss_pred eEEEEEEeec--CCeeEEEEEcCC-----CCCCCCCcEEEEEecCCCCCCcccccc
Q 012960 289 AVLIVGYDSE--NGVDYWIIKNSW-----GRSWGMNGYMHMQRNTGNSLGICGINM 337 (452)
Q Consensus 289 aV~IVGyg~~--~g~~yWivkNSW-----G~~WGe~GY~~i~r~~~~~~~~CgI~~ 337 (452)
-|++||++++ +-+.|-|++.+- -..=|.+||. +..+.+......||..
T Consensus 17 ~v~~vG~ADd~~~~~~yiilQR~~~~de~D~~~~~d~~~-~e~~~~~~~~Yg~i~~ 71 (115)
T PF15588_consen 17 NVLMVGFADDEDGPKEYIILQRSLEFDEQDEDLGSDGYY-TECNDQGYSCYGGIEK 71 (115)
T ss_pred cEEEEEEecCCCCCceEEEEEccCCCCCcccccCcCcEE-EEEecCCCceeccEEE
Confidence 3899999975 346799999963 4445568886 4553333333445543
No 54
>PF13333 rve_2: Integrase core domain
Probab=20.97 E-value=1.8e+02 Score=20.51 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=24.6
Q ss_pred hCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHHhhhhhc
Q 012960 36 HGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFL 91 (452)
Q Consensus 36 ~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~fsDlt~eEf~~~~l 91 (452)
|++.|.+-+|. +..|+ ++|+-+|.+. ++ .||+.||++..|
T Consensus 13 ~~~~~~t~eel--~~~I~----~YI~~yN~~R-------l~---~lsP~eyr~~~l 52 (52)
T PF13333_consen 13 YRQKFKTREEL--KQAID----EYIDYYNNER-------LK---GLSPVEYRNQYL 52 (52)
T ss_pred CCcccchHHHH--HHHHH----HHHHHhccCC-------CC---CcCHHHHHHhhC
Confidence 45566654443 33443 3777788762 22 899999987643
No 55
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=20.57 E-value=78 Score=20.56 Aligned_cols=20 Identities=35% Similarity=0.735 Sum_probs=14.7
Q ss_pred CCccCCCceeeCCCCccccc
Q 012960 356 GPTRCSLLTYCAAGETCCCG 375 (452)
Q Consensus 356 ~p~~c~~~~~c~~~~tcc~~ 375 (452)
.+..|.....||.+.+|=-.
T Consensus 12 ~~~~C~~~~~CP~g~~C~~~ 31 (38)
T smart00289 12 SPVRCSPNGSCPSGYSCQNS 31 (38)
T ss_pred CCeECCCCCCCCCCCEEecC
Confidence 34578877789998888644
Done!