Query 012961
Match_columns 452
No_of_seqs 645 out of 3281
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 5.8E-85 1.3E-89 667.3 16.1 348 93-446 1-354 (506)
2 PF01209 Ubie_methyltran: ubiE 99.7 1.5E-17 3.3E-22 160.4 9.8 102 215-317 47-153 (233)
3 COG2226 UbiE Methylase involve 99.7 4.3E-17 9.2E-22 156.7 12.6 101 215-317 51-156 (238)
4 PRK11088 rrmA 23S rRNA methylt 99.7 1.6E-16 3.4E-21 156.8 11.3 161 121-320 20-184 (272)
5 COG2230 Cfa Cyclopropane fatty 99.6 2.4E-16 5.2E-21 154.2 7.5 217 179-410 44-282 (283)
6 PLN02233 ubiquinone biosynthes 99.6 4.7E-15 1E-19 145.6 16.0 135 216-351 74-249 (261)
7 PF08241 Methyltransf_11: Meth 99.6 1.5E-15 3.3E-20 123.7 8.1 93 220-315 1-95 (95)
8 PLN02244 tocopherol O-methyltr 99.6 2E-14 4.3E-19 146.4 16.9 135 215-351 118-279 (340)
9 PTZ00098 phosphoethanolamine N 99.6 1.2E-14 2.6E-19 142.8 14.4 165 187-361 32-213 (263)
10 PLN02396 hexaprenyldihydroxybe 99.6 2.1E-14 4.5E-19 144.7 12.6 136 215-352 131-291 (322)
11 TIGR02752 MenG_heptapren 2-hep 99.6 9.6E-14 2.1E-18 133.1 16.7 135 216-351 46-219 (231)
12 PF13489 Methyltransf_23: Meth 99.6 9.4E-15 2E-19 131.1 8.7 122 215-347 22-160 (161)
13 PF02353 CMAS: Mycolic acid cy 99.5 1.5E-15 3.2E-20 149.8 2.5 204 182-401 37-267 (273)
14 PRK14103 trans-aconitate 2-met 99.5 7.8E-14 1.7E-18 136.2 13.8 100 215-319 29-128 (255)
15 PRK10258 biotin biosynthesis p 99.5 1.6E-13 3.4E-18 133.5 15.9 101 215-319 42-142 (251)
16 COG2227 UbiG 2-polyprenyl-3-me 99.5 5.2E-14 1.1E-18 133.8 9.4 103 215-319 59-163 (243)
17 PLN02336 phosphoethanolamine N 99.5 2.9E-13 6.4E-18 143.6 15.2 141 215-361 266-425 (475)
18 PRK11705 cyclopropane fatty ac 99.5 6.6E-14 1.4E-18 144.5 9.6 188 215-411 167-372 (383)
19 PRK11036 putative S-adenosyl-L 99.5 2.6E-13 5.7E-18 132.6 13.1 136 215-352 44-209 (255)
20 PRK15068 tRNA mo(5)U34 methylt 99.5 4.9E-13 1.1E-17 135.1 13.8 134 216-351 123-275 (322)
21 PLN02490 MPBQ/MSBQ methyltrans 99.5 3.8E-13 8.3E-18 136.2 12.7 134 216-355 114-261 (340)
22 PRK11207 tellurite resistance 99.5 9E-13 1.9E-17 124.1 13.3 136 217-357 32-177 (197)
23 KOG1540 Ubiquinone biosynthesi 99.4 6.2E-13 1.3E-17 126.7 12.0 101 215-317 100-214 (296)
24 PRK08317 hypothetical protein; 99.4 2.4E-12 5.2E-17 122.7 16.1 147 193-353 5-179 (241)
25 PRK11873 arsM arsenite S-adeno 99.4 1.7E-12 3.7E-17 127.8 14.8 133 215-349 77-229 (272)
26 TIGR00452 methyltransferase, p 99.4 2.4E-12 5.2E-17 129.3 15.4 132 216-351 122-274 (314)
27 PRK05785 hypothetical protein; 99.4 8.6E-13 1.9E-17 126.9 10.4 90 216-311 52-141 (226)
28 PRK01683 trans-aconitate 2-met 99.4 1.3E-12 2.8E-17 127.6 11.0 103 215-320 31-133 (258)
29 TIGR02072 BioC biotin biosynth 99.4 5.3E-12 1.2E-16 120.6 14.6 133 216-352 35-178 (240)
30 PF13847 Methyltransf_31: Meth 99.4 1.1E-12 2.4E-17 117.9 9.3 102 215-319 3-112 (152)
31 TIGR00477 tehB tellurite resis 99.4 4.6E-12 1E-16 119.0 13.5 137 217-358 32-177 (195)
32 smart00828 PKS_MT Methyltransf 99.4 2.2E-12 4.7E-17 123.2 11.3 130 218-354 2-148 (224)
33 PF12847 Methyltransf_18: Meth 99.4 1.6E-12 3.5E-17 110.0 8.9 101 216-317 2-111 (112)
34 PRK15451 tRNA cmo(5)U34 methyl 99.4 6.2E-12 1.3E-16 122.4 13.4 127 216-345 57-192 (247)
35 TIGR00740 methyltransferase, p 99.4 9.4E-12 2E-16 120.3 14.5 100 216-319 54-163 (239)
36 PF07021 MetW: Methionine bios 99.4 5.8E-12 1.2E-16 116.6 11.6 129 216-352 14-169 (193)
37 PRK00107 gidB 16S rRNA methylt 99.3 1.5E-11 3.3E-16 114.8 13.8 119 216-350 46-169 (187)
38 PF13649 Methyltransf_25: Meth 99.3 1.1E-12 2.5E-17 109.6 4.1 93 219-311 1-101 (101)
39 PRK12335 tellurite resistance 99.3 1.2E-11 2.5E-16 123.1 12.0 131 217-352 122-261 (287)
40 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 5.5E-11 1.2E-15 112.5 15.5 103 215-318 39-144 (223)
41 COG4106 Tam Trans-aconitate me 99.3 9.4E-12 2E-16 116.1 8.5 123 214-344 29-151 (257)
42 KOG1270 Methyltransferases [Co 99.3 9.1E-12 2E-16 119.4 8.5 129 216-351 90-250 (282)
43 PRK00216 ubiE ubiquinone/menaq 99.3 9.1E-11 2E-15 112.2 15.3 130 216-351 52-226 (239)
44 PRK00121 trmB tRNA (guanine-N( 99.3 2E-11 4.3E-16 115.4 10.4 122 216-346 41-177 (202)
45 PF05219 DREV: DREV methyltran 99.3 5.6E-11 1.2E-15 114.5 12.9 166 170-349 53-239 (265)
46 PF08242 Methyltransf_12: Meth 99.3 1.4E-12 3E-17 108.4 1.5 93 220-313 1-99 (99)
47 TIGR00138 gidB 16S rRNA methyl 99.2 7.4E-11 1.6E-15 109.7 12.7 123 216-351 43-170 (181)
48 COG4976 Predicted methyltransf 99.2 7.1E-12 1.5E-16 117.7 5.5 134 215-352 125-267 (287)
49 PRK06202 hypothetical protein; 99.2 1.5E-10 3.2E-15 111.4 14.0 135 215-353 60-225 (232)
50 smart00138 MeTrc Methyltransfe 99.2 3.5E-11 7.5E-16 118.4 9.2 103 215-318 99-243 (264)
51 KOG4300 Predicted methyltransf 99.2 4.3E-11 9.4E-16 110.9 8.9 100 218-318 79-183 (252)
52 TIGR02021 BchM-ChlM magnesium 99.2 1.2E-10 2.5E-15 111.2 11.8 133 215-351 55-207 (219)
53 TIGR02081 metW methionine bios 99.2 2.7E-10 5.9E-15 106.7 13.7 126 217-350 15-167 (194)
54 PLN02336 phosphoethanolamine N 99.2 1.1E-10 2.4E-15 124.0 12.2 127 216-348 38-180 (475)
55 PF03848 TehB: Tellurite resis 99.2 8.3E-11 1.8E-15 109.9 9.4 136 216-357 31-176 (192)
56 TIGR03587 Pse_Me-ase pseudamin 99.2 1.6E-10 3.4E-15 109.5 11.2 97 216-317 44-142 (204)
57 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.6E-10 3.5E-15 108.4 11.2 122 217-347 18-155 (194)
58 PRK05134 bifunctional 3-demeth 99.2 4.3E-10 9.3E-15 108.1 14.3 134 215-350 48-205 (233)
59 PRK04266 fibrillarin; Provisio 99.2 4.6E-10 9.9E-15 108.0 14.3 131 215-351 72-211 (226)
60 TIGR01983 UbiG ubiquinone bios 99.2 3E-10 6.5E-15 108.2 13.0 134 216-351 46-204 (224)
61 PF08003 Methyltransf_9: Prote 99.2 2.8E-10 6.2E-15 112.0 12.8 133 215-351 115-268 (315)
62 PRK08287 cobalt-precorrin-6Y C 99.2 1.1E-09 2.3E-14 102.0 16.0 122 215-350 31-156 (187)
63 PRK09489 rsmC 16S ribosomal RN 99.2 1.5E-10 3.2E-15 118.0 10.8 118 191-320 180-306 (342)
64 KOG1541 Predicted protein carb 99.2 1.5E-10 3.3E-15 108.3 9.7 134 193-344 34-181 (270)
65 PLN02585 magnesium protoporphy 99.1 5.5E-10 1.2E-14 112.4 14.2 129 216-349 145-298 (315)
66 PF05401 NodS: Nodulation prot 99.1 2E-10 4.3E-15 106.7 9.9 98 214-318 42-147 (201)
67 TIGR00537 hemK_rel_arch HemK-r 99.1 6.5E-10 1.4E-14 102.8 13.3 122 217-350 21-165 (179)
68 PRK06922 hypothetical protein; 99.1 1.6E-10 3.5E-15 124.4 10.1 101 216-318 419-538 (677)
69 COG2264 PrmA Ribosomal protein 99.1 1E-09 2.2E-14 108.6 14.5 124 215-351 162-289 (300)
70 PRK11188 rrmJ 23S rRNA methylt 99.1 2.8E-10 6.1E-15 108.2 9.8 91 216-318 52-166 (209)
71 PF05175 MTS: Methyltransferas 99.1 9.6E-11 2.1E-15 107.7 6.4 116 192-318 16-141 (170)
72 TIGR00406 prmA ribosomal prote 99.1 1.5E-09 3.2E-14 108.2 14.7 118 216-349 160-282 (288)
73 TIGR03534 RF_mod_PrmC protein- 99.1 2.4E-09 5.1E-14 103.6 15.5 122 217-349 89-240 (251)
74 PLN02232 ubiquinone biosynthes 99.1 3.8E-10 8.2E-15 102.8 9.4 89 262-351 27-148 (160)
75 TIGR02469 CbiT precorrin-6Y C5 99.1 1.5E-09 3.3E-14 92.9 12.6 98 216-317 20-122 (124)
76 TIGR03840 TMPT_Se_Te thiopurin 99.1 6.8E-10 1.5E-14 105.9 11.3 132 217-349 36-186 (213)
77 TIGR02716 C20_methyl_CrtF C-20 99.1 1.9E-09 4.2E-14 108.1 15.1 128 215-347 149-303 (306)
78 PRK15001 SAM-dependent 23S rib 99.1 9.4E-10 2E-14 113.1 13.1 132 177-318 197-341 (378)
79 TIGR01177 conserved hypothetic 99.1 1.5E-09 3.2E-14 110.2 14.1 123 215-350 182-315 (329)
80 COG2813 RsmC 16S RNA G1207 met 99.1 4.7E-10 1E-14 110.6 9.9 160 176-347 126-296 (300)
81 PTZ00146 fibrillarin; Provisio 99.1 3.8E-09 8.1E-14 104.6 15.3 131 215-350 132-271 (293)
82 PRK00517 prmA ribosomal protei 99.1 3.1E-09 6.6E-14 103.7 14.6 117 215-350 119-238 (250)
83 PF06325 PrmA: Ribosomal prote 99.0 1.3E-09 2.8E-14 108.6 11.3 149 180-350 132-283 (295)
84 PF03141 Methyltransf_29: Puta 99.0 2.9E-10 6.2E-15 118.2 6.8 125 214-350 364-491 (506)
85 PRK14967 putative methyltransf 99.0 8.2E-09 1.8E-13 98.9 16.0 123 216-348 37-182 (223)
86 PRK14968 putative methyltransf 99.0 5.7E-09 1.2E-13 96.3 13.9 125 215-349 23-172 (188)
87 PRK07580 Mg-protoporphyrin IX 99.0 5.6E-09 1.2E-13 99.8 14.2 130 216-351 64-215 (230)
88 PRK13944 protein-L-isoaspartat 99.0 3.3E-09 7.1E-14 100.5 11.8 95 215-317 72-173 (205)
89 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.8E-09 8.3E-14 108.5 12.4 99 217-317 124-235 (390)
90 PRK00377 cbiT cobalt-precorrin 99.0 7.5E-09 1.6E-13 97.4 13.2 119 215-346 40-166 (198)
91 PRK13942 protein-L-isoaspartat 99.0 4.2E-09 9.1E-14 100.3 11.4 109 193-317 62-176 (212)
92 PF06080 DUF938: Protein of un 99.0 8.4E-09 1.8E-13 96.9 13.0 149 192-351 11-193 (204)
93 COG4123 Predicted O-methyltran 98.9 3.4E-09 7.3E-14 102.4 9.9 126 216-350 45-194 (248)
94 TIGR00080 pimt protein-L-isoas 98.9 8.6E-09 1.9E-13 98.2 12.1 95 215-317 77-177 (215)
95 KOG1271 Methyltransferases [Ge 98.9 1E-08 2.3E-13 93.5 11.8 123 217-349 69-204 (227)
96 PRK13255 thiopurine S-methyltr 98.9 9.5E-09 2.1E-13 98.4 11.7 131 217-349 39-189 (218)
97 PRK14966 unknown domain/N5-glu 98.9 4E-08 8.6E-13 101.7 17.0 125 217-351 253-406 (423)
98 KOG3010 Methyltransferase [Gen 98.9 1.3E-09 2.9E-14 103.5 5.2 114 217-344 35-158 (261)
99 PLN03075 nicotianamine synthas 98.9 6.5E-09 1.4E-13 103.2 10.1 102 215-317 123-233 (296)
100 PRK09328 N5-glutamine S-adenos 98.8 9.6E-08 2.1E-12 93.9 16.3 124 215-348 108-260 (275)
101 PF13659 Methyltransf_26: Meth 98.8 2.6E-09 5.7E-14 91.0 4.5 97 217-318 2-116 (117)
102 cd02440 AdoMet_MTases S-adenos 98.8 1.4E-08 3.1E-13 82.0 8.6 93 218-316 1-103 (107)
103 TIGR03438 probable methyltrans 98.8 2.1E-08 4.5E-13 100.6 11.5 103 216-318 64-178 (301)
104 PF05148 Methyltransf_8: Hypot 98.8 1.9E-08 4.1E-13 94.3 9.9 112 216-350 73-185 (219)
105 PRK07402 precorrin-6B methylas 98.8 1.2E-07 2.6E-12 89.0 15.4 98 215-318 40-143 (196)
106 TIGR03533 L3_gln_methyl protei 98.8 5.3E-08 1.2E-12 96.9 13.5 122 216-349 122-273 (284)
107 PRK00312 pcm protein-L-isoaspa 98.8 6.4E-08 1.4E-12 91.9 12.2 96 215-318 78-176 (212)
108 KOG3987 Uncharacterized conser 98.8 1.6E-08 3.4E-13 94.0 6.8 160 175-348 78-258 (288)
109 TIGR00536 hemK_fam HemK family 98.7 1.3E-07 2.8E-12 94.0 12.9 122 217-349 116-268 (284)
110 KOG2940 Predicted methyltransf 98.7 1.3E-08 2.9E-13 95.8 5.3 129 217-351 74-228 (325)
111 KOG3045 Predicted RNA methylas 98.7 2.5E-08 5.5E-13 95.5 7.1 112 215-350 180-291 (325)
112 TIGR00438 rrmJ cell division p 98.7 7.1E-08 1.5E-12 89.9 9.9 92 215-317 32-146 (188)
113 PRK11805 N5-glutamine S-adenos 98.7 1.8E-07 3.8E-12 94.2 12.7 121 217-349 135-285 (307)
114 TIGR03704 PrmC_rel_meth putati 98.7 6E-07 1.3E-11 87.8 15.9 120 217-348 88-238 (251)
115 PRK00811 spermidine synthase; 98.7 2.1E-07 4.5E-12 92.6 12.7 105 215-320 76-194 (283)
116 KOG2361 Predicted methyltransf 98.7 8.6E-08 1.9E-12 91.3 9.2 133 217-349 73-236 (264)
117 PF05891 Methyltransf_PK: AdoM 98.7 1.1E-07 2.4E-12 89.9 9.5 137 214-352 54-203 (218)
118 PRK13256 thiopurine S-methyltr 98.6 2.4E-07 5.3E-12 88.9 11.5 102 216-317 44-163 (226)
119 COG2242 CobL Precorrin-6B meth 98.6 1E-06 2.2E-11 81.4 15.0 122 215-349 34-160 (187)
120 PRK10901 16S rRNA methyltransf 98.6 4.9E-07 1.1E-11 95.0 14.6 126 215-346 244-397 (427)
121 PRK01544 bifunctional N5-gluta 98.6 2.9E-07 6.2E-12 98.7 12.7 124 216-350 139-293 (506)
122 PRK14901 16S rRNA methyltransf 98.6 4.2E-07 9.1E-12 95.7 13.7 125 215-345 252-408 (434)
123 PF02390 Methyltransf_4: Putat 98.6 2E-07 4.3E-12 87.8 10.1 121 218-347 20-157 (195)
124 PHA03411 putative methyltransf 98.6 2.1E-07 4.5E-12 91.4 10.2 124 217-346 66-210 (279)
125 PF03291 Pox_MCEL: mRNA cappin 98.6 2.2E-07 4.8E-12 94.3 10.8 141 215-356 62-273 (331)
126 TIGR00563 rsmB ribosomal RNA s 98.6 6.8E-07 1.5E-11 94.0 13.9 105 215-320 238-371 (426)
127 PRK13943 protein-L-isoaspartat 98.6 3.7E-07 8.1E-12 92.3 11.3 94 216-317 81-180 (322)
128 PRK01581 speE spermidine synth 98.6 1.1E-06 2.3E-11 89.6 14.1 126 215-350 150-297 (374)
129 PF01135 PCMT: Protein-L-isoas 98.5 2.1E-07 4.7E-12 88.4 8.2 111 192-317 57-172 (209)
130 PRK14904 16S rRNA methyltransf 98.5 6.2E-07 1.3E-11 94.8 12.2 124 215-345 250-401 (445)
131 PRK03612 spermidine synthase; 98.5 8.4E-07 1.8E-11 95.5 13.0 125 215-345 297-439 (521)
132 COG2518 Pcm Protein-L-isoaspar 98.5 7.1E-07 1.5E-11 84.1 10.3 94 215-317 72-169 (209)
133 PRK14902 16S rRNA methyltransf 98.5 1.1E-06 2.4E-11 92.8 12.7 125 215-346 250-404 (444)
134 KOG1975 mRNA cap methyltransfe 98.5 3.2E-07 6.9E-12 90.6 7.7 105 215-320 117-240 (389)
135 TIGR00446 nop2p NOL1/NOP2/sun 98.5 8.9E-07 1.9E-11 87.2 10.5 104 215-319 71-201 (264)
136 PLN02366 spermidine synthase 98.5 1.5E-06 3.3E-11 87.4 12.3 101 215-321 91-210 (308)
137 PRK04457 spermidine synthase; 98.5 4.9E-07 1.1E-11 88.9 8.4 102 215-317 66-177 (262)
138 PRK14903 16S rRNA methyltransf 98.4 7.2E-07 1.6E-11 93.8 9.9 105 215-320 237-369 (431)
139 smart00650 rADc Ribosomal RNA 98.4 7.9E-07 1.7E-11 81.4 9.0 93 216-317 14-113 (169)
140 TIGR00417 speE spermidine synt 98.4 2.5E-06 5.4E-11 84.3 12.9 122 215-341 72-206 (270)
141 COG2519 GCD14 tRNA(1-methylade 98.4 2.4E-06 5.1E-11 82.5 12.3 117 215-347 94-217 (256)
142 COG2890 HemK Methylase of poly 98.4 2.8E-06 6.1E-11 84.4 13.2 120 218-349 113-262 (280)
143 PF07942 N2227: N2227-like pro 98.4 2.9E-06 6.3E-11 83.4 13.0 133 215-350 56-242 (270)
144 PF01739 CheR: CheR methyltran 98.4 6.5E-07 1.4E-11 84.3 7.9 105 215-319 31-177 (196)
145 PF05724 TPMT: Thiopurine S-me 98.4 2.3E-06 5E-11 81.9 10.3 132 215-350 37-190 (218)
146 PRK13168 rumA 23S rRNA m(5)U19 98.4 4.6E-06 1E-10 88.1 13.5 121 216-351 298-425 (443)
147 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1.7E-06 3.7E-11 96.4 10.5 124 216-349 539-679 (702)
148 COG0220 Predicted S-adenosylme 98.3 1.4E-06 3E-11 83.8 7.8 99 217-317 50-164 (227)
149 TIGR00478 tly hemolysin TlyA f 98.3 7.1E-06 1.5E-10 79.0 11.9 120 215-349 75-216 (228)
150 PHA03412 putative methyltransf 98.3 2.6E-06 5.7E-11 82.0 8.5 95 217-312 51-158 (241)
151 PLN02781 Probable caffeoyl-CoA 98.3 2.7E-06 5.8E-11 82.3 8.7 97 216-317 69-178 (234)
152 PF00891 Methyltransf_2: O-met 98.3 2.8E-06 6.2E-11 82.1 8.5 95 214-318 99-200 (241)
153 PLN02672 methionine S-methyltr 98.2 5.8E-06 1.2E-10 94.8 11.1 123 216-347 119-300 (1082)
154 PF11968 DUF3321: Putative met 98.2 6.7E-06 1.4E-10 77.7 9.7 120 216-351 52-182 (219)
155 TIGR00479 rumA 23S rRNA (uraci 98.2 1.2E-05 2.7E-10 84.5 12.8 121 216-350 293-420 (431)
156 PRK11727 23S rRNA mA1618 methy 98.2 1.4E-05 2.9E-10 80.8 12.3 97 190-287 89-197 (321)
157 PF12147 Methyltransf_20: Puta 98.2 1E-05 2.2E-10 79.6 11.0 138 210-349 130-297 (311)
158 PF08704 GCD14: tRNA methyltra 98.2 1.4E-05 3.1E-10 77.8 12.0 121 215-350 40-171 (247)
159 PRK15128 23S rRNA m(5)C1962 me 98.2 1.1E-05 2.4E-10 83.9 11.5 127 216-346 221-365 (396)
160 COG1041 Predicted DNA modifica 98.2 1.7E-05 3.8E-10 79.9 12.3 119 215-351 197-331 (347)
161 PRK10909 rsmD 16S rRNA m(2)G96 98.2 2.1E-05 4.6E-10 74.2 12.0 132 176-319 22-161 (199)
162 PRK10611 chemotaxis methyltran 98.2 1E-05 2.2E-10 80.5 10.2 101 217-317 117-262 (287)
163 COG2521 Predicted archaeal met 98.2 3.3E-06 7.2E-11 80.2 6.2 127 215-349 134-276 (287)
164 PF10294 Methyltransf_16: Puta 98.2 6.2E-06 1.3E-10 76.1 7.8 102 215-319 45-158 (173)
165 KOG2899 Predicted methyltransf 98.1 6.1E-06 1.3E-10 78.8 7.7 97 215-316 58-208 (288)
166 PRK01544 bifunctional N5-gluta 98.1 1.2E-05 2.5E-10 86.4 10.6 122 215-346 347-484 (506)
167 COG0500 SmtA SAM-dependent met 98.1 2.7E-05 5.8E-10 65.8 9.4 99 219-320 52-158 (257)
168 PRK03522 rumB 23S rRNA methylu 98.0 4.6E-05 1E-09 77.0 12.4 120 216-351 174-297 (315)
169 COG1352 CheR Methylase of chem 98.0 2.8E-05 6.1E-10 76.5 9.4 104 215-318 96-242 (268)
170 PLN02476 O-methyltransferase 98.0 2.2E-05 4.8E-10 77.7 8.4 98 215-317 118-228 (278)
171 KOG2904 Predicted methyltransf 98.0 6.2E-05 1.3E-09 73.2 10.8 122 191-318 129-286 (328)
172 PF01596 Methyltransf_3: O-met 98.0 2.4E-05 5.3E-10 74.2 8.0 97 216-317 46-155 (205)
173 COG4122 Predicted O-methyltran 98.0 3.7E-05 8.1E-10 73.4 9.1 98 215-317 59-166 (219)
174 TIGR02085 meth_trns_rumB 23S r 97.9 0.00011 2.3E-09 76.1 12.7 119 217-351 235-357 (374)
175 KOG1269 SAM-dependent methyltr 97.9 2E-05 4.4E-10 80.8 7.2 98 218-316 113-214 (364)
176 KOG1331 Predicted methyltransf 97.9 5.5E-06 1.2E-10 81.0 2.7 99 216-321 46-147 (293)
177 KOG1499 Protein arginine N-met 97.9 1.8E-05 3.9E-10 79.5 5.8 98 215-314 60-164 (346)
178 COG3963 Phospholipid N-methylt 97.9 7.9E-05 1.7E-09 67.6 9.1 103 215-317 48-156 (194)
179 KOG1661 Protein-L-isoaspartate 97.9 0.00014 2.9E-09 68.4 10.6 95 215-316 82-192 (237)
180 PF05185 PRMT5: PRMT5 arginine 97.8 3.2E-05 7E-10 81.6 6.9 96 216-314 187-294 (448)
181 PRK00274 ksgA 16S ribosomal RN 97.8 4.3E-05 9.3E-10 75.6 7.2 67 215-286 42-112 (272)
182 PRK14896 ksgA 16S ribosomal RN 97.8 6.2E-05 1.3E-09 73.9 8.1 79 194-287 16-99 (258)
183 PF01170 UPF0020: Putative RNA 97.7 0.00032 6.9E-09 65.1 10.9 119 215-350 28-171 (179)
184 COG2263 Predicted RNA methylas 97.7 0.0001 2.2E-09 68.3 6.6 118 215-349 45-167 (198)
185 PF02475 Met_10: Met-10+ like- 97.6 0.00016 3.5E-09 68.3 7.6 130 168-314 64-199 (200)
186 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 7.7E-05 1.7E-09 72.9 5.5 85 265-349 138-238 (256)
187 PLN02823 spermine synthase 97.6 0.00043 9.3E-09 70.5 11.1 97 215-317 103-220 (336)
188 TIGR00755 ksgA dimethyladenosi 97.6 0.00035 7.7E-09 68.2 10.1 66 215-287 29-102 (253)
189 PLN02589 caffeoyl-CoA O-methyl 97.6 0.0001 2.2E-09 71.9 6.2 96 216-316 80-189 (247)
190 PRK04148 hypothetical protein; 97.6 0.00022 4.8E-09 62.9 7.2 91 215-316 16-108 (134)
191 PTZ00338 dimethyladenosine tra 97.6 0.00023 5E-09 71.2 8.1 70 215-286 36-108 (294)
192 PF02527 GidB: rRNA small subu 97.6 0.00097 2.1E-08 62.2 11.7 120 218-350 51-175 (184)
193 KOG3191 Predicted N6-DNA-methy 97.4 0.0033 7.2E-08 58.0 12.7 122 216-347 44-190 (209)
194 PRK04338 N(2),N(2)-dimethylgua 97.4 0.00034 7.4E-09 72.5 7.2 96 217-318 59-159 (382)
195 KOG2798 Putative trehalase [Ca 97.4 0.0027 5.8E-08 63.1 12.9 73 278-351 258-338 (369)
196 PF09243 Rsm22: Mitochondrial 97.4 0.0024 5.1E-08 63.4 12.8 121 215-348 33-166 (274)
197 PRK00536 speE spermidine synth 97.4 0.0015 3.2E-08 64.3 10.6 114 214-346 71-195 (262)
198 KOG3201 Uncharacterized conser 97.3 0.00011 2.3E-09 66.4 2.2 74 277-358 101-175 (201)
199 TIGR00095 RNA methyltransferas 97.3 0.0032 7E-08 58.9 12.3 99 216-318 50-160 (189)
200 COG0421 SpeE Spermidine syntha 97.3 0.0017 3.6E-08 64.6 10.8 104 215-324 76-197 (282)
201 KOG3178 Hydroxyindole-O-methyl 97.3 0.0013 2.8E-08 66.4 10.0 97 215-318 177-276 (342)
202 PRK05031 tRNA (uracil-5-)-meth 97.3 0.0011 2.4E-08 68.3 9.8 118 217-351 208-344 (362)
203 KOG2352 Predicted spermine/spe 97.3 0.0016 3.4E-08 68.4 10.2 98 218-317 51-161 (482)
204 PRK11933 yebU rRNA (cytosine-C 97.3 0.0014 3E-08 69.7 10.0 104 215-319 113-244 (470)
205 COG2520 Predicted methyltransf 97.2 0.003 6.5E-08 64.3 11.5 156 172-344 155-314 (341)
206 TIGR02143 trmA_only tRNA (urac 97.2 0.002 4.3E-08 66.2 9.7 116 218-350 200-334 (353)
207 COG1092 Predicted SAM-dependen 97.1 0.0031 6.8E-08 65.4 10.9 129 216-347 218-363 (393)
208 KOG1663 O-methyltransferase [S 97.1 0.0027 5.8E-08 60.7 9.0 96 216-316 74-182 (237)
209 TIGR03439 methyl_EasF probable 97.1 0.0043 9.4E-08 62.8 11.1 101 217-317 78-197 (319)
210 COG0357 GidB Predicted S-adeno 97.1 0.0094 2E-07 56.9 12.6 122 216-351 68-196 (215)
211 PF01564 Spermine_synth: Sperm 97.1 0.003 6.6E-08 61.6 9.4 122 215-346 76-216 (246)
212 COG4627 Uncharacterized protei 97.0 0.00047 1E-08 61.8 3.3 76 269-345 37-133 (185)
213 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0018 3.9E-08 65.0 7.8 120 193-320 32-186 (311)
214 PF01269 Fibrillarin: Fibrilla 97.0 0.01 2.2E-07 56.7 11.8 151 189-350 52-212 (229)
215 KOG1500 Protein arginine N-met 97.0 0.0015 3.4E-08 65.2 6.4 91 215-314 177-279 (517)
216 KOG2915 tRNA(1-methyladenosine 96.9 0.011 2.4E-07 57.9 11.7 130 196-348 94-233 (314)
217 COG2265 TrmA SAM-dependent met 96.8 0.01 2.2E-07 62.6 11.5 122 215-349 293-419 (432)
218 COG0030 KsgA Dimethyladenosine 96.8 0.0042 9.1E-08 60.8 8.0 82 195-286 18-102 (259)
219 PRK11760 putative 23S rRNA C24 96.8 0.013 2.9E-07 59.4 11.6 117 215-343 211-332 (357)
220 KOG3420 Predicted RNA methylas 96.8 0.00097 2.1E-08 59.3 3.0 70 216-286 49-121 (185)
221 TIGR02987 met_A_Alw26 type II 96.8 0.0073 1.6E-07 65.3 10.4 109 216-324 32-203 (524)
222 COG0293 FtsJ 23S rRNA methylas 96.7 0.018 4E-07 54.4 11.4 91 216-317 46-159 (205)
223 PF01728 FtsJ: FtsJ-like methy 96.7 0.0024 5.3E-08 58.8 5.3 92 215-318 23-140 (181)
224 PF08123 DOT1: Histone methyla 96.5 0.0076 1.6E-07 57.2 7.3 118 188-315 23-156 (205)
225 PF10672 Methyltrans_SAM: S-ad 96.5 0.0073 1.6E-07 60.2 7.3 104 216-319 124-240 (286)
226 TIGR00308 TRM1 tRNA(guanine-26 96.5 0.006 1.3E-07 63.1 6.7 96 217-318 46-148 (374)
227 COG1189 Predicted rRNA methyla 96.4 0.083 1.8E-06 50.9 13.7 125 215-349 79-223 (245)
228 COG1889 NOP1 Fibrillarin-like 96.4 0.13 2.9E-06 48.4 14.3 155 186-351 52-215 (231)
229 PF03602 Cons_hypoth95: Conser 96.3 0.006 1.3E-07 56.9 5.3 132 176-318 10-154 (183)
230 KOG0820 Ribosomal RNA adenine 96.3 0.013 2.9E-07 57.3 7.7 70 215-286 58-130 (315)
231 COG3897 Predicted methyltransf 96.3 0.023 4.9E-07 53.2 8.8 97 215-317 79-178 (218)
232 KOG1709 Guanidinoacetate methy 96.1 0.024 5.3E-07 53.7 8.3 113 193-317 88-206 (271)
233 PF04816 DUF633: Family of unk 95.9 0.059 1.3E-06 51.2 9.8 119 219-351 1-125 (205)
234 PF05958 tRNA_U5-meth_tr: tRNA 95.8 0.019 4E-07 59.1 6.5 55 218-273 199-256 (352)
235 COG4262 Predicted spermidine s 95.8 0.068 1.5E-06 54.4 10.1 163 176-349 255-435 (508)
236 PLN02668 indole-3-acetate carb 95.8 0.067 1.4E-06 55.5 10.5 45 274-319 157-239 (386)
237 PRK11783 rlmL 23S rRNA m(2)G24 95.7 0.038 8.3E-07 61.9 9.1 103 216-318 191-348 (702)
238 PRK13699 putative methylase; P 95.7 0.038 8.2E-07 53.3 7.9 82 265-359 4-101 (227)
239 PF03059 NAS: Nicotianamine sy 95.7 0.052 1.1E-06 53.8 8.7 124 191-318 98-231 (276)
240 PF13679 Methyltransf_32: Meth 95.6 0.088 1.9E-06 46.7 9.5 99 214-321 24-135 (141)
241 COG0144 Sun tRNA and rRNA cyto 95.6 0.069 1.5E-06 55.0 9.9 127 214-346 155-313 (355)
242 PF03492 Methyltransf_7: SAM d 95.5 0.039 8.4E-07 56.3 7.6 80 214-294 15-121 (334)
243 COG0742 N6-adenine-specific me 95.4 0.18 3.9E-06 47.1 10.9 134 176-318 11-155 (187)
244 PRK00050 16S rRNA m(4)C1402 me 95.3 0.029 6.2E-07 56.3 5.5 72 216-292 20-103 (296)
245 PF04672 Methyltransf_19: S-ad 95.3 0.13 2.7E-06 50.7 9.8 100 215-319 68-192 (267)
246 COG4798 Predicted methyltransf 95.2 0.2 4.3E-06 47.0 10.3 136 215-352 48-207 (238)
247 PF00398 RrnaAD: Ribosomal RNA 95.0 0.05 1.1E-06 53.5 6.4 100 193-309 16-123 (262)
248 COG0116 Predicted N6-adenine-s 94.9 0.16 3.5E-06 52.4 9.6 98 217-318 193-345 (381)
249 PF13578 Methyltransf_24: Meth 94.7 0.0087 1.9E-07 50.0 0.1 94 220-317 1-105 (106)
250 PF09445 Methyltransf_15: RNA 94.5 0.054 1.2E-06 49.6 4.7 68 218-286 2-76 (163)
251 PF01861 DUF43: Protein of unk 94.1 1.5 3.2E-05 42.7 13.8 133 215-355 44-183 (243)
252 KOG2187 tRNA uracil-5-methyltr 94.0 0.068 1.5E-06 56.6 4.8 72 192-272 368-442 (534)
253 KOG3115 Methyltransferase-like 93.9 0.1 2.3E-06 49.1 5.2 99 218-317 63-183 (249)
254 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.5 0.076 1.7E-06 52.9 4.1 126 215-346 85-244 (283)
255 COG5459 Predicted rRNA methyla 93.3 0.32 6.9E-06 49.5 7.9 43 278-320 184-228 (484)
256 COG4076 Predicted RNA methylas 93.2 0.081 1.7E-06 49.3 3.3 88 218-314 35-132 (252)
257 TIGR01444 fkbM_fam methyltrans 93.2 0.14 2.9E-06 44.9 4.6 35 218-252 1-39 (143)
258 PF05971 Methyltransf_10: Prot 93.0 0.39 8.5E-06 48.2 8.1 95 190-287 80-185 (299)
259 PF06962 rRNA_methylase: Putat 92.6 0.28 6.1E-06 43.7 5.8 109 238-349 2-124 (140)
260 PRK11524 putative methyltransf 92.2 0.42 9E-06 47.6 7.1 82 264-359 10-108 (284)
261 COG3129 Predicted SAM-dependen 91.0 0.73 1.6E-05 44.4 6.9 97 189-288 54-162 (292)
262 KOG4589 Cell division protein 90.8 1.5 3.2E-05 41.1 8.5 30 216-245 70-104 (232)
263 KOG1122 tRNA and rRNA cytosine 90.6 0.96 2.1E-05 47.1 7.9 127 214-347 240-397 (460)
264 PF06859 Bin3: Bicoid-interact 90.5 0.18 3.9E-06 42.9 2.2 38 279-317 1-44 (110)
265 KOG2793 Putative N2,N2-dimethy 90.4 1.8 3.8E-05 42.4 9.3 101 216-317 87-199 (248)
266 PF07091 FmrO: Ribosomal RNA m 90.3 1.4 2.9E-05 43.1 8.3 131 215-349 105-243 (251)
267 PF10354 DUF2431: Domain of un 90.3 3.9 8.4E-05 37.5 11.0 119 222-350 3-152 (166)
268 KOG2198 tRNA cytosine-5-methyl 90.2 1.7 3.8E-05 44.5 9.3 122 194-318 137-297 (375)
269 COG1064 AdhP Zn-dependent alco 89.5 1 2.2E-05 46.0 7.1 95 215-319 166-261 (339)
270 COG2384 Predicted SAM-dependen 89.2 8.2 0.00018 37.1 12.4 119 218-350 19-143 (226)
271 PF04989 CmcI: Cephalosporin h 89.0 0.66 1.4E-05 44.0 5.0 99 216-317 33-147 (206)
272 KOG0822 Protein kinase inhibit 88.3 0.77 1.7E-05 49.0 5.4 123 216-339 368-500 (649)
273 PF03269 DUF268: Caenorhabditi 87.3 0.81 1.7E-05 41.7 4.2 71 278-349 62-144 (177)
274 cd00315 Cyt_C5_DNA_methylase C 85.1 7.7 0.00017 38.4 10.4 127 218-349 2-142 (275)
275 cd08283 FDH_like_1 Glutathione 84.1 4.1 9E-05 42.0 8.3 100 216-318 185-307 (386)
276 KOG1562 Spermidine synthase [A 84.1 2.7 5.8E-05 42.0 6.4 103 215-320 121-239 (337)
277 KOG4058 Uncharacterized conser 83.4 7.8 0.00017 35.0 8.4 70 215-284 72-145 (199)
278 KOG1596 Fibrillarin and relate 82.8 7.7 0.00017 37.8 8.7 98 215-318 156-262 (317)
279 KOG1099 SAM-dependent methyltr 82.1 2.1 4.5E-05 41.3 4.6 110 216-340 42-182 (294)
280 PRK01747 mnmC bifunctional tRN 81.6 4.1 8.8E-05 45.4 7.5 71 264-348 150-225 (662)
281 PF07757 AdoMet_MTase: Predict 81.6 1.5 3.2E-05 37.3 3.1 22 215-236 58-79 (112)
282 PRK09424 pntA NAD(P) transhydr 81.4 6.2 0.00013 42.7 8.5 99 215-318 164-286 (509)
283 cd08254 hydroxyacyl_CoA_DH 6-h 79.8 6.4 0.00014 39.0 7.6 91 216-317 166-263 (338)
284 COG0286 HsdM Type I restrictio 79.8 16 0.00034 39.4 11.0 119 194-320 173-329 (489)
285 KOG2920 Predicted methyltransf 78.9 1.1 2.3E-05 44.4 1.6 42 279-321 196-238 (282)
286 PF14740 DUF4471: Domain of un 76.8 5.4 0.00012 39.9 5.9 63 278-346 221-285 (289)
287 PF01555 N6_N4_Mtase: DNA meth 76.7 3.8 8.3E-05 38.1 4.7 56 292-358 31-87 (231)
288 PRK09880 L-idonate 5-dehydroge 76.7 9.1 0.0002 38.6 7.7 94 216-318 170-267 (343)
289 PF11899 DUF3419: Protein of u 75.8 12 0.00027 38.9 8.5 73 244-317 258-334 (380)
290 COG1568 Predicted methyltransf 74.6 18 0.00038 36.1 8.5 122 215-347 152-285 (354)
291 COG4301 Uncharacterized conser 73.6 22 0.00047 35.0 8.7 100 216-317 79-193 (321)
292 COG3510 CmcI Cephalosporin hyd 71.0 10 0.00022 35.8 5.6 99 215-318 69-181 (237)
293 PF03514 GRAS: GRAS domain fam 68.9 48 0.001 34.4 11.0 100 215-315 110-242 (374)
294 cd05188 MDR Medium chain reduc 67.1 19 0.00041 34.0 7.1 92 215-318 134-233 (271)
295 KOG1501 Arginine N-methyltrans 66.5 14 0.0003 39.1 6.1 65 194-261 47-114 (636)
296 cd08245 CAD Cinnamyl alcohol d 65.9 23 0.0005 35.1 7.7 93 216-317 163-256 (330)
297 KOG2730 Methylase [General fun 65.8 3.2 7E-05 39.8 1.4 69 217-286 96-172 (263)
298 PF05430 Methyltransf_30: S-ad 65.2 9.9 0.00022 33.1 4.3 59 278-350 49-111 (124)
299 COG1565 Uncharacterized conser 65.1 7.9 0.00017 39.8 4.1 20 216-235 78-97 (370)
300 TIGR00561 pntA NAD(P) transhyd 64.7 12 0.00025 40.6 5.5 96 215-315 163-282 (511)
301 PRK15001 SAM-dependent 23S rib 64.4 89 0.0019 32.5 11.8 91 218-317 47-142 (378)
302 cd08232 idonate-5-DH L-idonate 63.0 30 0.00065 34.4 8.0 92 216-317 166-262 (339)
303 TIGR02822 adh_fam_2 zinc-bindi 62.5 36 0.00077 34.2 8.4 89 216-318 166-255 (329)
304 cd08234 threonine_DH_like L-th 61.6 34 0.00074 33.8 8.1 93 216-318 160-258 (334)
305 PF00107 ADH_zinc_N: Zinc-bind 61.1 6.8 0.00015 33.2 2.5 85 225-319 1-91 (130)
306 PRK10742 putative methyltransf 61.0 27 0.00059 34.2 6.8 68 218-287 91-172 (250)
307 PHA01634 hypothetical protein 60.8 31 0.00067 30.5 6.4 31 215-245 28-61 (156)
308 TIGR00675 dcm DNA-methyltransf 59.9 27 0.00058 35.3 6.9 123 219-348 1-138 (315)
309 KOG0024 Sorbitol dehydrogenase 59.6 36 0.00078 34.7 7.5 97 214-318 168-274 (354)
310 cd08230 glucose_DH Glucose deh 59.3 25 0.00054 35.6 6.7 91 216-317 173-269 (355)
311 PTZ00357 methyltransferase; Pr 58.8 39 0.00084 37.9 8.1 104 217-321 702-843 (1072)
312 KOG2671 Putative RNA methylase 57.5 22 0.00048 36.5 5.7 71 215-285 208-290 (421)
313 PF02005 TRM: N2,N2-dimethylgu 56.6 13 0.00029 38.6 4.1 97 217-318 51-155 (377)
314 TIGR02825 B4_12hDH leukotriene 56.4 53 0.0012 32.5 8.4 92 216-317 139-237 (325)
315 TIGR00006 S-adenosyl-methyltra 55.9 31 0.00068 34.8 6.5 66 216-286 21-99 (305)
316 KOG2651 rRNA adenine N-6-methy 55.6 16 0.00034 38.0 4.3 30 215-244 153-185 (476)
317 TIGR00027 mthyl_TIGR00027 meth 54.0 2.2E+02 0.0048 27.8 15.5 103 216-318 82-198 (260)
318 PF07927 YcfA: YcfA-like prote 53.9 26 0.00056 25.4 4.3 31 331-361 1-31 (56)
319 TIGR00853 pts-lac PTS system, 52.1 26 0.00056 28.9 4.4 81 218-321 5-86 (95)
320 PLN03154 putative allyl alcoho 52.0 60 0.0013 32.9 8.1 93 215-317 158-258 (348)
321 cd08255 2-desacetyl-2-hydroxye 52.0 54 0.0012 31.4 7.4 91 216-317 98-190 (277)
322 KOG2539 Mitochondrial/chloropl 51.5 45 0.00098 35.6 7.0 105 215-320 200-318 (491)
323 TIGR03451 mycoS_dep_FDH mycoth 51.2 55 0.0012 33.1 7.7 93 216-318 177-277 (358)
324 PF00145 DNA_methylase: C-5 cy 50.2 46 0.00099 32.8 6.8 122 218-349 2-141 (335)
325 TIGR03366 HpnZ_proposed putati 50.0 46 0.001 32.4 6.7 92 216-317 121-218 (280)
326 COG1867 TRM1 N2,N2-dimethylgua 48.9 38 0.00083 35.0 5.9 97 216-318 53-155 (380)
327 TIGR01202 bchC 2-desacetyl-2-h 48.3 49 0.0011 32.8 6.6 81 217-317 146-231 (308)
328 PF13334 DUF4094: Domain of un 47.7 9.9 0.00021 31.6 1.2 18 22-39 4-21 (95)
329 KOG1227 Putative methyltransfe 46.6 7.2 0.00016 39.1 0.3 130 166-312 153-290 (351)
330 cd05564 PTS_IIB_chitobiose_lic 46.4 48 0.001 27.2 5.2 79 222-322 4-83 (96)
331 cd05565 PTS_IIB_lactose PTS_II 46.0 43 0.00093 28.0 4.8 76 219-317 3-78 (99)
332 TIGR03201 dearomat_had 6-hydro 45.7 66 0.0014 32.4 7.2 94 216-318 167-273 (349)
333 COG0270 Dcm Site-specific DNA 45.5 91 0.002 31.6 8.2 123 217-344 4-141 (328)
334 cd08237 ribitol-5-phosphate_DH 45.4 61 0.0013 32.6 6.9 87 216-317 164-256 (341)
335 KOG1253 tRNA methyltransferase 45.2 17 0.00036 38.9 2.7 99 215-318 109-217 (525)
336 PRK10458 DNA cytosine methylas 45.0 3E+02 0.0065 29.6 12.2 42 193-236 67-108 (467)
337 cd08281 liver_ADH_like1 Zinc-d 44.5 58 0.0013 33.1 6.7 92 216-317 192-290 (371)
338 cd08261 Zn_ADH7 Alcohol dehydr 43.1 83 0.0018 31.2 7.4 90 216-317 160-258 (337)
339 COG0604 Qor NADPH:quinone redu 42.8 58 0.0013 33.0 6.2 93 216-318 143-242 (326)
340 cd08239 THR_DH_like L-threonin 42.8 73 0.0016 31.7 6.9 94 216-318 164-263 (339)
341 cd08294 leukotriene_B4_DH_like 42.1 1E+02 0.0022 30.2 7.9 91 216-317 144-241 (329)
342 cd05278 FDH_like Formaldehyde 40.8 68 0.0015 31.8 6.4 90 216-317 168-267 (347)
343 PRK09590 celB cellobiose phosp 39.8 81 0.0018 26.5 5.6 82 218-322 3-87 (104)
344 cd08295 double_bond_reductase_ 38.6 1.2E+02 0.0026 30.2 7.8 93 215-317 151-251 (338)
345 PF01788 PsbJ: PsbJ; InterPro 38.4 64 0.0014 22.3 3.8 20 16-35 13-32 (40)
346 PRK09548 PTS system ascorbate- 38.3 1.2E+02 0.0025 33.7 7.9 58 215-287 505-562 (602)
347 PF11599 AviRa: RRNA methyltra 38.1 21 0.00046 34.3 2.0 36 214-249 50-91 (246)
348 PF01555 N6_N4_Mtase: DNA meth 38.0 47 0.001 30.7 4.4 45 193-246 178-224 (231)
349 PF02254 TrkA_N: TrkA-N domain 37.9 97 0.0021 25.5 6.0 104 224-346 4-113 (116)
350 PLN02740 Alcohol dehydrogenase 37.2 1E+02 0.0022 31.6 7.1 93 216-317 199-300 (381)
351 cd00401 AdoHcyase S-adenosyl-L 37.1 65 0.0014 34.0 5.6 89 215-318 201-290 (413)
352 COG4093 Uncharacterized protei 36.8 28 0.0006 35.0 2.6 33 3-38 4-36 (338)
353 cd05285 sorbitol_DH Sorbitol d 35.9 1.4E+02 0.0029 29.8 7.7 92 216-317 163-265 (343)
354 PRK11524 putative methyltransf 35.8 1.1E+02 0.0023 30.3 6.7 34 215-248 208-243 (284)
355 PLN02586 probable cinnamyl alc 35.7 68 0.0015 32.6 5.5 32 279-317 247-278 (360)
356 PRK10310 PTS system galactitol 35.6 69 0.0015 26.2 4.5 52 222-287 7-58 (94)
357 PF07629 DUF1590: Protein of u 35.0 23 0.00049 22.6 1.1 18 120-137 5-22 (32)
358 cd08293 PTGR2 Prostaglandin re 34.3 1.6E+02 0.0035 29.2 7.9 90 217-317 156-254 (345)
359 cd08236 sugar_DH NAD(P)-depend 34.1 1.5E+02 0.0033 29.3 7.7 92 216-317 160-258 (343)
360 PF04445 SAM_MT: Putative SAM- 34.0 53 0.0011 31.9 4.0 71 217-287 77-159 (234)
361 COG1063 Tdh Threonine dehydrog 33.9 1.5E+02 0.0033 30.2 7.7 93 218-319 171-271 (350)
362 PRK13699 putative methylase; P 33.2 1.1E+02 0.0024 29.3 6.2 34 215-248 163-198 (227)
363 PRK10309 galactitol-1-phosphat 32.9 1.4E+02 0.003 29.9 7.2 93 216-317 161-260 (347)
364 PLN02827 Alcohol dehydrogenase 32.4 1.4E+02 0.0029 30.7 7.1 93 216-317 194-295 (378)
365 PF11312 DUF3115: Protein of u 32.3 1.1E+02 0.0024 31.1 6.0 62 262-323 176-249 (315)
366 PF11253 DUF3052: Protein of u 31.8 2.2E+02 0.0048 25.0 7.1 73 278-355 44-116 (127)
367 PF11293 DUF3094: Protein of u 31.8 66 0.0014 23.8 3.2 22 12-33 30-51 (55)
368 cd08242 MDR_like Medium chain 30.7 2E+02 0.0044 28.0 7.9 89 216-317 156-245 (319)
369 cd08298 CAD2 Cinnamyl alcohol 29.4 2.3E+02 0.005 27.8 8.0 85 217-317 169-256 (329)
370 COG0373 HemA Glutamyl-tRNA red 29.3 1.8E+02 0.0039 30.8 7.3 75 215-294 177-253 (414)
371 TIGR02819 fdhA_non_GSH formald 29.2 2.4E+02 0.0053 29.1 8.4 99 217-318 187-300 (393)
372 cd08285 NADP_ADH NADP(H)-depen 28.8 1.8E+02 0.0039 29.0 7.2 92 216-317 167-266 (351)
373 cd05281 TDH Threonine dehydrog 28.1 2.3E+02 0.005 28.1 7.8 34 278-318 230-263 (341)
374 PF07172 GRP: Glycine rich pro 28.0 53 0.0011 27.3 2.6 14 13-26 4-17 (95)
375 PF02636 Methyltransf_28: Puta 27.9 46 0.001 32.2 2.6 20 216-235 19-38 (252)
376 COG0686 Ald Alanine dehydrogen 27.8 92 0.002 31.8 4.6 97 216-315 168-266 (371)
377 COG3414 SgaB Phosphotransferas 27.5 1.6E+02 0.0035 24.3 5.3 54 219-287 4-57 (93)
378 cd08241 QOR1 Quinone oxidoredu 27.4 2.2E+02 0.0047 27.3 7.3 91 216-317 140-238 (323)
379 cd08231 MDR_TM0436_like Hypoth 27.3 2.7E+02 0.0059 27.8 8.3 33 278-317 248-280 (361)
380 cd08279 Zn_ADH_class_III Class 27.2 2.6E+02 0.0057 28.1 8.1 90 216-317 183-282 (363)
381 TIGR02818 adh_III_F_hyde S-(hy 26.6 2.2E+02 0.0048 28.9 7.5 93 216-317 186-287 (368)
382 cd08263 Zn_ADH10 Alcohol dehyd 26.6 1.7E+02 0.0037 29.5 6.7 34 277-317 254-287 (367)
383 PF05711 TylF: Macrocin-O-meth 26.6 2E+02 0.0042 28.2 6.6 73 262-344 158-232 (248)
384 COG0863 DNA modification methy 26.5 1.6E+02 0.0035 28.7 6.2 52 296-360 78-129 (302)
385 PF14258 DUF4350: Domain of un 26.2 2.2E+02 0.0048 21.4 5.7 19 298-316 51-69 (70)
386 TIGR00692 tdh L-threonine 3-de 26.2 3.3E+02 0.0071 27.0 8.5 35 277-318 228-262 (340)
387 PF05781 MRVI1: MRVI1 protein; 26.1 69 0.0015 34.7 3.6 27 13-39 478-504 (538)
388 PRK09489 rsmC 16S ribosomal RN 25.4 4.3E+02 0.0094 27.0 9.3 91 217-319 21-114 (342)
389 TIGR02764 spore_ybaN_pdaB poly 25.2 4.2E+02 0.0091 24.1 8.4 51 295-348 137-187 (191)
390 PLN02178 cinnamyl-alcohol dehy 25.1 1.3E+02 0.0028 30.9 5.4 32 279-317 242-273 (375)
391 PF05206 TRM13: Methyltransfer 25.0 64 0.0014 31.8 3.0 20 216-235 19-38 (259)
392 cd08243 quinone_oxidoreductase 24.6 2.2E+02 0.0049 27.4 6.9 89 216-317 143-238 (320)
393 cd08270 MDR4 Medium chain dehy 24.4 3.4E+02 0.0074 26.0 8.1 88 216-317 133-222 (305)
394 COG0287 TyrA Prephenate dehydr 24.1 2E+02 0.0043 28.6 6.3 89 218-314 5-95 (279)
395 TIGR02884 spore_pdaA delta-lac 23.6 6.3E+02 0.014 23.8 10.0 48 296-348 173-220 (224)
396 PF07101 DUF1363: Protein of u 23.2 31 0.00067 28.6 0.3 14 219-232 6-19 (124)
397 cd08300 alcohol_DH_class_III c 23.0 2.6E+02 0.0056 28.3 7.1 93 216-317 187-288 (368)
398 COG0690 SecE Preprotein transl 22.9 78 0.0017 24.9 2.5 25 10-34 37-61 (73)
399 PF14983 DUF4513: Domain of un 22.6 29 0.00064 29.7 0.1 34 115-149 81-117 (132)
400 COG5379 BtaA S-adenosylmethion 22.0 3.6E+02 0.0078 27.4 7.4 70 247-317 293-366 (414)
401 TIGR00518 alaDH alanine dehydr 21.9 78 0.0017 32.7 3.1 99 215-316 166-266 (370)
402 cd08277 liver_alcohol_DH_like 21.7 2.7E+02 0.006 28.1 7.1 94 216-318 185-287 (365)
403 PF12575 DUF3753: Protein of u 21.7 1.1E+02 0.0025 24.0 3.1 18 16-33 52-69 (72)
404 PF13807 GNVR: G-rich domain o 21.5 1.1E+02 0.0023 24.3 3.1 23 10-32 56-78 (82)
405 cd08274 MDR9 Medium chain dehy 21.5 3.1E+02 0.0068 27.0 7.3 90 216-317 178-273 (350)
406 cd08289 MDR_yhfp_like Yhfp put 21.5 2.9E+02 0.0062 26.9 7.0 92 217-318 148-244 (326)
407 PF01558 POR: Pyruvate ferredo 21.3 1.6E+02 0.0035 26.5 4.7 46 264-318 41-87 (173)
408 KOG1098 Putative SAM-dependent 21.2 79 0.0017 35.0 2.9 33 215-247 44-81 (780)
409 cd08246 crotonyl_coA_red croto 20.8 4.8E+02 0.01 26.5 8.7 31 279-317 285-315 (393)
410 PHA02692 hypothetical protein; 20.7 1.5E+02 0.0033 23.2 3.6 9 11-19 43-51 (70)
411 cd05567 PTS_IIB_mannitol PTS_I 20.5 2.5E+02 0.0055 22.2 5.2 30 255-287 24-53 (87)
412 KOG2352 Predicted spermine/spe 20.5 1.3E+02 0.0028 32.3 4.3 103 215-317 295-416 (482)
413 cd08278 benzyl_alcohol_DH Benz 20.3 3.6E+02 0.0077 27.2 7.5 93 216-318 187-286 (365)
414 PRK05708 2-dehydropantoate 2-r 20.0 6.1E+02 0.013 25.2 9.0 94 218-319 4-106 (305)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=5.8e-85 Score=667.29 Aligned_cols=348 Identities=57% Similarity=1.101 Sum_probs=329.1
Q ss_pred CcccCCChhHHhHhhcCCCcccccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCcchhhcccCCCCccccccccccce
Q 012961 93 ELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWM 172 (452)
Q Consensus 93 ~~~pc~d~~~~~~~~~~~~~~~~~~~er~C~~~~~~~~clv~~P~gY~~P~~wp~s~d~~w~~n~~~~~La~~~~~~~W~ 172 (452)
|||||+|+.++.+. +.++++++|||||||+.+++++||||+|+||+.|++||+|||++||+|+||++|+++|+.|+|+
T Consensus 1 dy~PC~D~~~~~~~--~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv 78 (506)
T PF03141_consen 1 DYIPCLDNSRAIKF--LLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWV 78 (506)
T ss_pred CCcCCCCHHHHHhh--ccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccce
Confidence 79999999886443 3589999999999999899999999999999999999999999999999999999999999999
Q ss_pred eecCceeecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHH
Q 012961 173 VVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQ 252 (452)
Q Consensus 173 ~~~g~~~~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~ 252 (452)
+.+|+.+.|||+|++|..|+++|++.|.++++.. ..++..+++||||||+|+|+++|++++|+++++++.+.++++
T Consensus 79 ~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~q 154 (506)
T PF03141_consen 79 RVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQ 154 (506)
T ss_pred eecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchh
Confidence 9999999999999999999999999999999853 345788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCC-CCChhhHHHH
Q 012961 253 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIW 331 (452)
Q Consensus 253 ~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~-~~~~~~~~~~ 331 (452)
+|+|.+||+++.+.+...++|||++++||+|||++|.+.|..+.+.+|-|++|+|||||+|+++.|+.+ ...++..+.|
T Consensus 155 vqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~ 234 (506)
T PF03141_consen 155 VQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEW 234 (506)
T ss_pred hhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHH
Confidence 999999999999998899999999999999999999999999989999999999999999999999999 4556677899
Q ss_pred HHHHHHHHhCCCEEEEEEeceeEeecccchhhHhhhCCCCCCCcccCCCCcchhhhhcccccccccccCcccccCccccC
Q 012961 332 NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 411 (452)
Q Consensus 332 ~~l~~ll~~~Gf~~v~~~~~~~iw~kp~~~~~~~~r~~~~~p~lc~~~~~~~~~wy~~l~~C~~~~~~~~~~~~~~~~~~ 411 (452)
.+++++++++||+++.++++++|||||.+++||..|+....|+||.+++++|++||++|++||+++|+.....+++++++
T Consensus 235 ~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 235 NAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999999999999999999999999999999988889999998899999999999999999999877778899999
Q ss_pred CCCCCCCCCCCCcc---CCCCcccccccC-cccccc-ccc
Q 012961 412 WPARLTAPPPRLEE---VGVTTEEFHEDI-SWRGEK-HYD 446 (452)
Q Consensus 412 wp~rl~~~p~~~~~---~g~~~~~~~~d~-~w~~~~-~y~ 446 (452)
||+||+++|+||.. .|+++|+|++|| +|++++ +|+
T Consensus 315 WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~ 354 (506)
T PF03141_consen 315 WPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYK 354 (506)
T ss_pred ChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 899999999999 999995 676
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.72 E-value=1.5e-17 Score=160.36 Aligned_cols=102 Identities=24% Similarity=0.381 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
++.+|||+|||+|.++..+++. .|+++|+++.++..+..+.......++.+.++|++++|+++++||+|+|++ .
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f-g 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF-G 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh-h
Confidence 4558999999999999998863 456666666555544433332223478999999999999999999999999 5
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
++..+|....++|++|+|||||++++.+
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 8888899999999999999999999765
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=4.3e-17 Score=156.69 Aligned_cols=101 Identities=25% Similarity=0.328 Sum_probs=81.5
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCC-----CeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI-----PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~-----~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
++.+|||||||||.++..+++..- ...+.+.|+++.|+..|+++.. .+.++++|++.|||+|++||+|.+++ .
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f-g 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF-G 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee-h
Confidence 456899999999999999997411 2334444555555566655532 27899999999999999999999999 6
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
++.++|.+.+|+|++|||||||++++..
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 8889999999999999999999998765
No 4
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.68 E-value=1.6e-16 Score=156.77 Aligned_cols=161 Identities=25% Similarity=0.418 Sum_probs=112.5
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCC--CCCCcchhhcccCCCCccccccccccceeecCceeecCCCCCCCcccHHHHHHH
Q 012961 121 HCPPPERRYNCLVPPPKGYKIPVR--WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILA 198 (452)
Q Consensus 121 ~C~~~~~~~~clv~~P~gY~~P~~--wp~s~d~~w~~n~~~~~La~~~~~~~W~~~~g~~~~F~g~g~~f~~~~~~y~~~ 198 (452)
+|++ .|+|| .+++||..-++ -..+++ +++..-|... +..|.+.| +|.+..+...+.
T Consensus 20 ~C~~-~h~fd---~a~~Gy~~ll~~~~~~~~~---------------~~d~~~~~~a--r~~fl~~g-~y~~l~~~i~~~ 77 (272)
T PRK11088 20 ICPQ-NHQFD---CAKEGYVNLLPVQHKRSKD---------------PGDNKEMMQA--RRAFLDAG-HYQPLRDAVANL 77 (272)
T ss_pred EcCC-CCCCc---cccCceEEeccccccCCCC---------------CCcCHHHHHH--HHHHHHCC-ChHHHHHHHHHH
Confidence 8998 89888 99999984432 333322 3333344433 34555443 566555555555
Q ss_pred HHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCC
Q 012961 199 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 276 (452)
Q Consensus 199 l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~ 276 (452)
+.+.+. ....+|||||||+|.++..|++. ...+..+.+.|+++.+++.|.++..++.+.++|+.++|++
T Consensus 78 l~~~l~---------~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~ 148 (272)
T PRK11088 78 LAERLD---------EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA 148 (272)
T ss_pred HHHhcC---------CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCc
Confidence 544433 13357999999999999988763 1112345556677777888887777888999999999999
Q ss_pred CCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012961 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 277 d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~ 320 (452)
+++||+|++..+ ...+.++.|+|||||+++++.|..
T Consensus 149 ~~sfD~I~~~~~--------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 149 DQSLDAIIRIYA--------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred CCceeEEEEecC--------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 999999997652 124789999999999999998765
No 5
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=2.4e-16 Score=154.23 Aligned_cols=217 Identities=14% Similarity=0.222 Sum_probs=150.0
Q ss_pred eecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHH
Q 012961 179 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE 258 (452)
Q Consensus 179 ~~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~ 258 (452)
--|++...........-.+.+.+.+.+ .++.+|||||||+|.++.++++. .++.+.+.++|++|...+++
T Consensus 44 ayf~~~~~tL~eAQ~~k~~~~~~kl~L--------~~G~~lLDiGCGWG~l~~~aA~~--y~v~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 44 AYFEDPDMTLEEAQRAKLDLILEKLGL--------KPGMTLLDIGCGWGGLAIYAAEE--YGVTVVGVTLSEEQLAYAEK 113 (283)
T ss_pred EEeCCCCCChHHHHHHHHHHHHHhcCC--------CCCCEEEEeCCChhHHHHHHHHH--cCCEEEEeeCCHHHHHHHHH
Confidence 345555545555555666666666664 34569999999999999999985 24444455556666555544
Q ss_pred ----cCCC--eEEEEecCCCCCCCCCCceEEEecccccccccc--HHHHHHHHHHhcCCCcEEEEEeCCCCC----CChh
Q 012961 259 ----RGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYA----HDPE 326 (452)
Q Consensus 259 ----rg~~--~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d--~~~~L~ei~RvLkPGG~lvi~~p~~~~----~~~~ 326 (452)
+|.. +++...|..++. +.||-|++.. .++|+.. ...+++.++++|+|||.+++.+..... ....
T Consensus 114 r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~ 189 (283)
T COG2230 114 RIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPD 189 (283)
T ss_pred HHHHcCCCcccEEEeccccccc---cccceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchH
Confidence 3544 777777777765 4599999887 6777654 688999999999999999987644322 1111
Q ss_pred hH--HH--------HHHHHHHHHhCCCEEEEEEeceeEeecccchhhHhhhCCCCCCCcccCCCCcchhhhhcccccccc
Q 012961 327 NR--RI--------WNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISP 396 (452)
Q Consensus 327 ~~--~~--------~~~l~~ll~~~Gf~~v~~~~~~~iw~kp~~~~~~~~r~~~~~p~lc~~~~~~~~~wy~~l~~C~~~ 396 (452)
.. .+ ...+....++.||.+...+.....+.+++..++..+.... +...-..++.....|..+|.+|.+.
T Consensus 190 ~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~-~~a~~~~~e~~~r~w~~yl~~~~~~ 268 (283)
T COG2230 190 FIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANR-DEAIALYDERFYRMWELYLAACAAA 268 (283)
T ss_pred HHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 11 11 1467777899999999999998888889888777655431 1111112445566799999999999
Q ss_pred cccCcccccCcccc
Q 012961 397 YSAKMHHEKGTGLV 410 (452)
Q Consensus 397 ~~~~~~~~~~~~~~ 410 (452)
|+.+..+..|.++.
T Consensus 269 Fr~~~~~~~q~~~~ 282 (283)
T COG2230 269 FRAGYIDVFQFTLT 282 (283)
T ss_pred hccCCceEEEEEee
Confidence 99887766665443
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.64 E-value=4.7e-15 Score=145.56 Aligned_cols=135 Identities=12% Similarity=0.118 Sum_probs=97.7
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHH--H-cCCCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFAL--E-RGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~--~-rg~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
..+|||||||+|.++..+++. .|+++|+++.++..+..+... . ...++.+.++|+..+|+++++||+|++++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 458999999999999888753 466776666555444322110 1 12357889999999999999999999888
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCC-----------------------Chhh-------HH---HHHHH
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-----------------------DPEN-------RR---IWNAM 334 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~-----------------------~~~~-------~~---~~~~l 334 (452)
++|+.+++..+++|+.|+|||||++++.+...... ..+. .. ..+++
T Consensus 154 -~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el 232 (261)
T PLN02233 154 -GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEEL 232 (261)
T ss_pred -ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHH
Confidence 58888999999999999999999999876432110 0000 01 12578
Q ss_pred HHHHHhCCCEEEEEEec
Q 012961 335 YDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 335 ~~ll~~~Gf~~v~~~~~ 351 (452)
.++++++||+.+.....
T Consensus 233 ~~ll~~aGF~~~~~~~~ 249 (261)
T PLN02233 233 EKLALEAGFSSAKHYEI 249 (261)
T ss_pred HHHHHHCCCCEEEEEEc
Confidence 89999999998876553
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=1.5e-15 Score=123.72 Aligned_cols=93 Identities=29% Similarity=0.488 Sum_probs=76.5
Q ss_pred EEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCceEEEeccccccccccHH
Q 012961 220 LDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297 (452)
Q Consensus 220 LDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~ 297 (452)
||||||+|.++..|++. .+.++.+.|+++.+++.++++.. ...+...|...+|+++++||+|++.. +++|.++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS-VLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES-HGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccc-ceeeccCHH
Confidence 89999999999999986 45566666777888888887643 35589999999999999999999888 688888899
Q ss_pred HHHHHHHHhcCCCcEEEE
Q 012961 298 ILLLELDRLLRPGGYFVY 315 (452)
Q Consensus 298 ~~L~ei~RvLkPGG~lvi 315 (452)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.60 E-value=2e-14 Score=146.36 Aligned_cols=135 Identities=19% Similarity=0.365 Sum_probs=99.7
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
++.+|||||||+|.++..|++. .|+++|+++.++..+. +.+.+.+. ++.+.++|+..+|+++++||+|++.. .
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~-~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME-S 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC-c
Confidence 4568999999999999999863 5667766665554433 22333343 58899999999999999999999887 5
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCCC--CC-----hhhH-------H--------HHHHHHHHHHhCCCEEEE
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HD-----PENR-------R--------IWNAMYDLLKSMCWKIVS 347 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~--~~-----~~~~-------~--------~~~~l~~ll~~~Gf~~v~ 347 (452)
++|.++...+++++.|+|||||.+++++..... .. .... . .-+++.++++++||..+.
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~ 275 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIK 275 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeE
Confidence 777888899999999999999999997642110 00 0000 0 125888999999999987
Q ss_pred EEec
Q 012961 348 KKDQ 351 (452)
Q Consensus 348 ~~~~ 351 (452)
.++.
T Consensus 276 ~~d~ 279 (340)
T PLN02244 276 TEDW 279 (340)
T ss_pred eeeC
Confidence 7653
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.60 E-value=1.2e-14 Score=142.82 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=113.4
Q ss_pred CCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHc---CCCe
Q 012961 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPS 263 (452)
Q Consensus 187 ~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~r---g~~~ 263 (452)
.+.++-....+.+...+.. .+..+|||||||+|..+..|+.. .+..+.+.|+++.+++.|+++ ..++
T Consensus 32 ~~~~gg~~~~~~~l~~l~l--------~~~~~VLDiGcG~G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~~~i 101 (263)
T PTZ00098 32 YISSGGIEATTKILSDIEL--------NENSKVLDIGSGLGGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSDKNKI 101 (263)
T ss_pred CCCCCchHHHHHHHHhCCC--------CCCCEEEEEcCCCChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCcCCce
Confidence 3444444445555555543 24458999999999999888763 123444445556666666554 2357
Q ss_pred EEEEecCCCCCCCCCCceEEEecccccccc-ccHHHHHHHHHHhcCCCcEEEEEeCCCCCC--ChhhH-H----------
Q 012961 264 TLGVLGTKRLPYPSRSFELAHCSRCRIDWL-QRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPENR-R---------- 329 (452)
Q Consensus 264 ~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~-~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~--~~~~~-~---------- 329 (452)
.+...|+...++++++||+|++..+.+|.. .+...+++++.++|||||+++++++..... ..... .
T Consensus 102 ~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (263)
T PTZ00098 102 EFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLI 181 (263)
T ss_pred EEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCC
Confidence 888899888899989999999877544433 367889999999999999999987532110 01100 0
Q ss_pred HHHHHHHHHHhCCCEEEEEEeceeEeecccch
Q 012961 330 IWNAMYDLLKSMCWKIVSKKDQTVIWAKPISN 361 (452)
Q Consensus 330 ~~~~l~~ll~~~Gf~~v~~~~~~~iw~kp~~~ 361 (452)
.-+++.++++++||+.+..++.+..|......
T Consensus 182 ~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~~ 213 (263)
T PTZ00098 182 PIQEYGDLIKSCNFQNVVAKDISDYWLELLQV 213 (263)
T ss_pred CHHHHHHHHHHCCCCeeeEEeCcHHHHHHHHH
Confidence 12588899999999999998887777666554
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.56 E-value=2.1e-14 Score=144.68 Aligned_cols=136 Identities=14% Similarity=0.147 Sum_probs=99.8
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg--~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
...+|||||||+|.++..|+.. .|+++|+++.++..+... +...+ .++.+.+.+++++++++++||+|+|.. ++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~-vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE-VI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhh-HH
Confidence 3458999999999999999864 466666655554433321 11112 257888889889988888999999988 79
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCC---------------ChhhHH------HHHHHHHHHHhCCCEEEEEE
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------------DPENRR------IWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~---------------~~~~~~------~~~~l~~ll~~~Gf~~v~~~ 349 (452)
+|+.++..+++++.++|||||.++++++..... .+.... .-+++..+++++||+++...
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 999999999999999999999999987643110 000111 12689999999999998776
Q ss_pred ece
Q 012961 350 DQT 352 (452)
Q Consensus 350 ~~~ 352 (452)
...
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 543
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.56 E-value=9.6e-14 Score=133.14 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=96.8
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
..+|||+|||+|.++..+++. .++++|+++.++..+....+.....++.+...|...+++++++||+|++.. .+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF-GL 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec-cc
Confidence 458999999999999988753 466776666555443322222112357888899988888888999999887 67
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCC--------------hh---------hHH-----------HHHHHHH
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD--------------PE---------NRR-----------IWNAMYD 336 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~--------------~~---------~~~-----------~~~~l~~ 336 (452)
++.++...+++++.++|+|||++++..+...... +. ... ..+++.+
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAE 204 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888889999999999999999998764321100 00 000 1157889
Q ss_pred HHHhCCCEEEEEEec
Q 012961 337 LLKSMCWKIVSKKDQ 351 (452)
Q Consensus 337 ll~~~Gf~~v~~~~~ 351 (452)
+++++||+.+..+..
T Consensus 205 ~l~~aGf~~~~~~~~ 219 (231)
T TIGR02752 205 MFQEAGFKDVEVKSY 219 (231)
T ss_pred HHHHcCCCeeEEEEc
Confidence 999999998866543
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.56 E-value=9.4e-15 Score=131.06 Aligned_cols=122 Identities=29% Similarity=0.496 Sum_probs=89.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
+..+|||||||+|.++..|++. .++++|+ ++.++.. ........+....+.++++||+|+|+. +++|
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~ 90 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDI-----SPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICND-VLEH 90 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEES-----SHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEES-SGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEEC-----CHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHH-HHhh
Confidence 4458999999999999999875 4455554 4444443 233334443445556678999999987 7999
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCCCCC----------CChh---hH--HHHHHHHHHHHhCCCEEEE
Q 012961 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYA----------HDPE---NR--RIWNAMYDLLKSMCWKIVS 347 (452)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~----------~~~~---~~--~~~~~l~~ll~~~Gf~~v~ 347 (452)
++++..+|+++.++|||||+++++++.... .... .. ..-+++..+++++||++++
T Consensus 91 ~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 91 LPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999976421 1110 00 1126899999999999886
No 13
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.54 E-value=1.5e-15 Score=149.85 Aligned_cols=204 Identities=15% Similarity=0.265 Sum_probs=127.0
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHc--
Q 012961 182 PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-- 259 (452)
Q Consensus 182 ~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~r-- 259 (452)
+.+.........+..+.+.+.+.+ .++.+|||||||+|.++.+++++ .++.+.+..+|+.+.+.++++
T Consensus 37 ~~~~~~Le~AQ~~k~~~~~~~~~l--------~~G~~vLDiGcGwG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~ 106 (273)
T PF02353_consen 37 DEGDDTLEEAQERKLDLLCEKLGL--------KPGDRVLDIGCGWGGLAIYAAER--YGCHVTGITLSEEQAEYARERIR 106 (273)
T ss_dssp SSTT--HHHHHHHHHHHHHTTTT----------TT-EEEEES-TTSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHhCC--------CCCCEEEEeCCCccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHH
Confidence 333333444444445555544442 34559999999999999999986 244455556666666666543
Q ss_pred --CC--CeEEEEecCCCCCCCCCCceEEEecccccccc--ccHHHHHHHHHHhcCCCcEEEEEeCCCC-------CCCh-
Q 012961 260 --GI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL--QRDGILLLELDRLLRPGGYFVYSSPEAY-------AHDP- 325 (452)
Q Consensus 260 --g~--~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~--~d~~~~L~ei~RvLkPGG~lvi~~p~~~-------~~~~- 325 (452)
|. .+.+...|..+++. +||.|++.. .++|+ .+...+++++.++|||||.+++...... ....
T Consensus 107 ~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~-~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~ 182 (273)
T PF02353_consen 107 EAGLEDRVEVRLQDYRDLPG---KFDRIVSIE-MFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSS 182 (273)
T ss_dssp CSTSSSTEEEEES-GGG------S-SEEEEES-EGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCC
T ss_pred hcCCCCceEEEEeeccccCC---CCCEEEEEe-chhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCc
Confidence 53 47788888877763 899999887 57776 4568899999999999999997542110 0000
Q ss_pred hh--HH--------HHHHHHHHHHhCCCEEEEEEeceeEeecccchhhHhhhCCCCCCCcccC-CCCcchhhhhcccccc
Q 012961 326 EN--RR--------IWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSS-DDDPDVTWNVLMKACI 394 (452)
Q Consensus 326 ~~--~~--------~~~~l~~ll~~~Gf~~v~~~~~~~iw~kp~~~~~~~~r~~~~~p~lc~~-~~~~~~~wy~~l~~C~ 394 (452)
.. .. ...++...+++.||++....+....|.+++..+-..+.+.. ..+... ++.-...|..+|..|.
T Consensus 183 ~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~--~~i~~~~~~~f~r~w~~yl~~~~ 260 (273)
T PF02353_consen 183 DFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENFDANR--EEIIALFDEEFYRMWRYYLAYCA 260 (273)
T ss_dssp HHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTH--HHHHHHSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHH
Confidence 11 11 12467778889999999999998888888888766555431 112221 3344567999999999
Q ss_pred cccccCc
Q 012961 395 SPYSAKM 401 (452)
Q Consensus 395 ~~~~~~~ 401 (452)
-.|..+.
T Consensus 261 ~~F~~g~ 267 (273)
T PF02353_consen 261 AGFRAGS 267 (273)
T ss_dssp HHHHTTS
T ss_pred HHHHCCC
Confidence 8877654
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=7.8e-14 Score=136.21 Aligned_cols=100 Identities=21% Similarity=0.372 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
...+|||||||+|.++..|++.. .+..+.+.|+++.+++.|++++ +.+..+|+..++ ++++||+|+|+. ++||++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNA-ALQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEeh-hhhhCC
Confidence 34689999999999999998641 1233444455666667776653 667888888775 567999999887 689999
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 295 RDGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
++..+++++.++|||||++++..+.
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999999999999997653
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.54 E-value=1.6e-13 Score=133.54 Aligned_cols=101 Identities=23% Similarity=0.407 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
...+|||+|||+|.++..|+.. +..+.+.|+++.+++.|+++.....+.++|.+.+|+++++||+|+++. .++|..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~~ 117 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQWCG 117 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhcC
Confidence 3458999999999999988764 234444456667777777776556788899999999989999999887 689999
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 295 RDGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
++..++.++.|+|+|||.++++.+.
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999999999999999999998754
No 16
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.51 E-value=5.2e-14 Score=133.75 Aligned_cols=103 Identities=20% Similarity=0.359 Sum_probs=85.3
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
.+.+|||||||-|.++..|++. .|+++|++...+..+. ..|.+.+..+.+....++++....++||+|+|.. +++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE-VlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME-VLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh-HHHc
Confidence 3458999999999999999974 6777766666665544 3445567777788888888876668999999999 7999
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 293 LQRDGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
.++++.+++.+.+++||||.++++++.
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 999999999999999999999999875
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.49 E-value=2.9e-13 Score=143.60 Aligned_cols=141 Identities=26% Similarity=0.382 Sum_probs=102.3
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~r----g~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
+..+|||||||+|.++..|+.. .++++|++ +.++..|+++ ..++.+.++|...+++++++||+|+|..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS-----~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLS-----VNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECC-----HHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECC
Confidence 3458999999999999888863 45555555 4444554433 3457888999988888888999999887
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCC--ChhhH----------HHHHHHHHHHHhCCCEEEEEEeceeEe
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPENR----------RIWNAMYDLLKSMCWKIVSKKDQTVIW 355 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~--~~~~~----------~~~~~l~~ll~~~Gf~~v~~~~~~~iw 355 (452)
+++|..++..++++++|+|||||.++++++..... ..... ..-+++.++++++||+++..++.+..|
T Consensus 341 -~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~ 419 (475)
T PLN02336 341 -TILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRTDQF 419 (475)
T ss_pred -cccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecchHHH
Confidence 57788899999999999999999999987532111 11100 112578899999999999877765544
Q ss_pred ecccch
Q 012961 356 AKPISN 361 (452)
Q Consensus 356 ~kp~~~ 361 (452)
......
T Consensus 420 ~~~~~~ 425 (475)
T PLN02336 420 LQVLQR 425 (475)
T ss_pred HHHHHH
Confidence 444433
No 18
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.49 E-value=6.6e-14 Score=144.54 Aligned_cols=188 Identities=16% Similarity=0.246 Sum_probs=129.9
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHc--CCCeEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~r--g~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
++.+|||||||+|.++..+++. .+..+.+.|+++.+++.|+++ +..+.+...|...+ +++||+|++.. .++|
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~-~~eh 240 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEH--YGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVG-MFEH 240 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeC-chhh
Confidence 3458999999999999999864 133455556666777777665 34466777776655 37899999877 5677
Q ss_pred cc--cHHHHHHHHHHhcCCCcEEEEEeCCCCCC----Ch---------hhHHHHHHHHHHHHhCCCEEEEEEeceeEeec
Q 012961 293 LQ--RDGILLLELDRLLRPGGYFVYSSPEAYAH----DP---------ENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 357 (452)
Q Consensus 293 ~~--d~~~~L~ei~RvLkPGG~lvi~~p~~~~~----~~---------~~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~k 357 (452)
+. +...+++++.++|||||++++........ .. .......++...++ .||.+...+.....|.+
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~ 319 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR 319 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH
Confidence 63 34679999999999999999976321110 00 00112245555555 58999988888888888
Q ss_pred ccchhhHhhhCCCCCCCcccC-CCCcchhhhhcccccccccccCcccccCccccC
Q 012961 358 PISNSCYLKRVPGSRPPLCSS-DDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 411 (452)
Q Consensus 358 p~~~~~~~~r~~~~~p~lc~~-~~~~~~~wy~~l~~C~~~~~~~~~~~~~~~~~~ 411 (452)
++..+...+++. .+.+... ++.-...|..+|..|...|..+.....+..+.+
T Consensus 320 TL~~W~~~f~~~--~~~~~~~~~~~~~r~w~~yl~~~~~~F~~~~~~~~q~~~~~ 372 (383)
T PRK11705 320 TLMAWHENFEAA--WPELADNYSERFYRMWRYYLLSCAGAFRARDIQLWQVVFSP 372 (383)
T ss_pred HHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEe
Confidence 888877766543 1223322 444556799999999999998877666665655
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=2.6e-13 Score=132.56 Aligned_cols=136 Identities=20% Similarity=0.262 Sum_probs=96.6
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEecCCCCC-CCCCCceEEEecccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLP-YPSRSFELAHCSRCR 289 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg--~~~~~~~~d~~~lp-~~d~sFDlVv~s~~~ 289 (452)
...+|||||||+|.++..|++. .|+++|+++.++..+. +.+.+.+ .++.+..++..+++ +.+++||+|+|.. +
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~-~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~-v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAK-QAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA-V 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh-H
Confidence 3458999999999999999874 4666666655554433 2222333 24678888877764 5678999999887 6
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCC-------------------------ChhhHHHHHHHHHHHHhCCCE
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-------------------------DPENRRIWNAMYDLLKSMCWK 344 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~-------------------------~~~~~~~~~~l~~ll~~~Gf~ 344 (452)
++|+.++..++.++.++|||||++++........ .+...-.-+++.++++++||+
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~ 201 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQ 201 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCe
Confidence 8899999999999999999999999865332100 000001126788999999999
Q ss_pred EEEEEece
Q 012961 345 IVSKKDQT 352 (452)
Q Consensus 345 ~v~~~~~~ 352 (452)
++......
T Consensus 202 ~~~~~gi~ 209 (255)
T PRK11036 202 IMGKTGVR 209 (255)
T ss_pred EeeeeeEE
Confidence 98777643
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=4.9e-13 Score=135.10 Aligned_cols=134 Identities=22% Similarity=0.189 Sum_probs=97.2
Q ss_pred CCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHH-HcCCCeEEEEecCCCCCCCCCCceEEEecccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~-~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~ 291 (452)
+++|||||||+|.++..+++. .|+|+|.++.++......... ....++.+..++++.+|+ +++||+|+|.. +++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~-vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG-VLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECC-hhh
Confidence 458999999999999999863 478888877666433211111 113468888899999998 68899999877 688
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCC-----CChhh----------HHHHHHHHHHHHhCCCEEEEEEec
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDPEN----------RRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~-----~~~~~----------~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
|..++..+|++++++|+|||.+++.+..... ..+.. ...-.++..+++++||+.++....
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 8899999999999999999999986421100 00000 012257899999999998876643
No 21
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.46 E-value=3.8e-13 Score=136.17 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=98.6
Q ss_pred CCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHc--CCCeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~r--g~~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
..+|||||||+|.++..+++. .++++|+ ++.+++.|+++ ..++.+..+|.+.+++++++||+|+++. +
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~-----S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~ 187 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQ-----SPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAG-S 187 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcC-h
Confidence 458999999999998888753 3555554 45555555543 2356788899999999889999999877 6
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCC--CCChhhH------HHHHHHHHHHHhCCCEEEEEEeceeEe
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAY--AHDPENR------RIWNAMYDLLKSMCWKIVSKKDQTVIW 355 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~--~~~~~~~------~~~~~l~~ll~~~Gf~~v~~~~~~~iw 355 (452)
+++.++...+++++.|+|||||.+++..+... +...... ...+++.++++++||+.++.+.....|
T Consensus 188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 188 IEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 78888888999999999999999988764221 0000000 123688899999999999887765554
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.45 E-value=9e-13 Score=124.06 Aligned_cols=136 Identities=16% Similarity=0.288 Sum_probs=90.5
Q ss_pred CEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
.+|||+|||+|.++.+|++. .|+++|+++.++..+... +...+. ++.+.+.|...++++ ++||+|+|+. ++||.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~ 108 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERI-KAAENLDNLHTAVVDLNNLTFD-GEYDFILSTV-VLMFL 108 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCCcceEEecChhhCCcC-CCcCEEEEec-chhhC
Confidence 47999999999999999975 567777776666554432 233343 367788888777775 6799999987 46665
Q ss_pred c--cHHHHHHHHHHhcCCCcEEEEEe-CCC--CC--CChhhHHHHHHHHHHHHhCCCEEEEEEeceeEeec
Q 012961 294 Q--RDGILLLELDRLLRPGGYFVYSS-PEA--YA--HDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 357 (452)
Q Consensus 294 ~--d~~~~L~ei~RvLkPGG~lvi~~-p~~--~~--~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~k 357 (452)
. +...+++++.++|+|||++++.. ... .. ..+...-.-+++.+.++ ||+++........+++
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~ 177 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHR 177 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcc
Confidence 4 45779999999999999966533 111 10 01110011245666665 8998877655444543
No 23
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.45 E-value=6.2e-13 Score=126.68 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCchHHHHHhh----------CCCccccCChhhhhHHHHHHHHHcCC----CeEEEEecCCCCCCCCCCc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSF 280 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~----------~~v~~vdis~~dis~~~~~~A~~rg~----~~~~~~~d~~~lp~~d~sF 280 (452)
...++||++||||.++..+.+ .+|+..|+++.++..+. +.|.+++. .+.++.+|+++|||++.+|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 447899999999999988875 25777888877776665 44444432 3678889999999999999
Q ss_pred eEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 281 DlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
|+.+.++ .+....++.+.|+|++|||||||+|.+-.
T Consensus 179 D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 179 DAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999988 57778899999999999999999999754
No 24
>PRK08317 hypothetical protein; Provisional
Probab=99.45 E-value=2.4e-12 Score=122.72 Aligned_cols=147 Identities=24% Similarity=0.383 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHc----CCCe
Q 012961 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER----GIPS 263 (452)
Q Consensus 193 ~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~r----g~~~ 263 (452)
..+.+.+.+.+.. .+..+|||+|||+|.++..+++. .++++|++ +.+++.++++ ..++
T Consensus 5 ~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~-----~~~~~~a~~~~~~~~~~~ 71 (241)
T PRK08317 5 RRYRARTFELLAV--------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRS-----EAMLALAKERAAGLGPNV 71 (241)
T ss_pred HHHHHHHHHHcCC--------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCC-----HHHHHHHHHHhhCCCCce
Confidence 4445555555543 23458999999999999988763 35555554 4444555443 4457
Q ss_pred EEEEecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCC---C--Ch----hhHHHH---
Q 012961 264 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA---H--DP----ENRRIW--- 331 (452)
Q Consensus 264 ~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~---~--~~----~~~~~~--- 331 (452)
.+...|...+++++++||+|++.. ++++..++..+++++.++|+|||.+++..+.... . .. .....|
T Consensus 72 ~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (241)
T PRK08317 72 EFVRGDADGLPFPDGSFDAVRSDR-VLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDH 150 (241)
T ss_pred EEEecccccCCCCCCCceEEEEec-hhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhc
Confidence 888888888888888999999887 6888889999999999999999999998753211 0 00 011111
Q ss_pred -------HHHHHHHHhCCCEEEEEEecee
Q 012961 332 -------NAMYDLLKSMCWKIVSKKDQTV 353 (452)
Q Consensus 332 -------~~l~~ll~~~Gf~~v~~~~~~~ 353 (452)
..+.++++++||..+..+....
T Consensus 151 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 179 (241)
T PRK08317 151 FADPWLGRRLPGLFREAGLTDIEVEPYTL 179 (241)
T ss_pred CCCCcHHHHHHHHHHHcCCCceeEEEEEE
Confidence 3678899999998876655443
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.44 E-value=1.7e-12 Score=127.84 Aligned_cols=133 Identities=18% Similarity=0.208 Sum_probs=95.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEecCCCCCCCCCCceEEEeccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg-~~~~~~~~d~~~lp~~d~sFDlVv~s~~ 288 (452)
+..+|||||||+|..+..++.. .|+++|+++.++..+... ....+ .++.+..+|.+.+++++++||+|++..
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~-~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~- 154 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN-ARKAGYTNVEFRLGEIEALPVADNSVDVIISNC- 154 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH-HHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC-
Confidence 3458999999999877665542 467777766655444322 22233 357788899999999888999999765
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhH--------------HHHHHHHHHHHhCCCEEEEEE
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR--------------RIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~--------------~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
++++.++...+++++.|+|||||++++++.......+... ....++.++++++||..+...
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 7888888889999999999999999997643211111110 123578889999999887654
No 26
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.43 E-value=2.4e-12 Score=129.33 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=93.9
Q ss_pred CCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHH---cCCCeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE---RGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~---rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
+++|||||||+|.++..++.. .|+|+|.+..++... +.+++ ...++.+...+.++++.. .+||+|+|+. +
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g-v 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG-V 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc-h
Confidence 458999999999998888753 467787777665432 12221 123567777888888765 4899999887 6
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCC-----ChhhH----------HHHHHHHHHHHhCCCEEEEEEec
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-----DPENR----------RIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~-----~~~~~----------~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
++|..++..+|++++|+|||||.|++.+...... .+... ..-.++...++++||+.++....
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 8888999999999999999999999865321100 00000 01257889999999999876653
No 27
>PRK05785 hypothetical protein; Provisional
Probab=99.41 E-value=8.6e-13 Score=126.87 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=72.1
Q ss_pred CCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d 295 (452)
..+|||||||+|.++..|++.. +..+.+.|+++.|++.|+++. .+.++|++.+|+++++||+|++++ .+++.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecC-hhhccCC
Confidence 3589999999999999988751 234444556666667776653 356789999999999999999988 5888899
Q ss_pred HHHHHHHHHHhcCCCc
Q 012961 296 DGILLLELDRLLRPGG 311 (452)
Q Consensus 296 ~~~~L~ei~RvLkPGG 311 (452)
++.+++|+.|+|||.+
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 9999999999999953
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=1.3e-12 Score=127.56 Aligned_cols=103 Identities=23% Similarity=0.346 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
+..+|||||||+|.++..+++. ..+..+.+.|+++.+++.|+++..++.+...|...+. ++++||+|+++. ++||..
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~-~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVER-WPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANA-SLQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEcc-ChhhCC
Confidence 4468999999999999998863 1122344445566666777777667888888887765 446899999888 689999
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012961 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~p~~ 320 (452)
+...+++++.++|||||.+++..+..
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 99999999999999999999987543
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.39 E-value=5.3e-12 Score=120.57 Aligned_cols=133 Identities=23% Similarity=0.351 Sum_probs=95.0
Q ss_pred CCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcC-CCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg-~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
..+|||||||+|.++..+++.. ....+.+.|+++.+++.++++. .++.+...|...+++++++||+|+++. +++|..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~-~l~~~~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL-ALQWCD 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-hhhhcc
Confidence 3589999999999999998741 1223344455566666665553 356788899999998889999999887 688988
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHH----------HHHHHHHHHHhCCCEEEEEEece
Q 012961 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR----------IWNAMYDLLKSMCWKIVSKKDQT 352 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~----------~~~~l~~ll~~~Gf~~v~~~~~~ 352 (452)
++..++.++.++|+|||.+++..+..... ..... .-+.+.+++++. |+.+......
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~ 178 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTL-HELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEEEL 178 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCH-HHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEEEE
Confidence 99999999999999999999987643211 11111 113567777777 7766554433
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.39 E-value=1.1e-12 Score=117.91 Aligned_cols=102 Identities=23% Similarity=0.408 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCC--CCCCCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp--~~d~sFDlVv~s 286 (452)
+..+|||+|||+|.++..|++ ..++++|+++.++..+. +.+++.+. ++.+.+.|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 345899999999999999993 24666666655554443 22233344 5899999998887 66 789999987
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
. ++++..+...+++++.++|++||.++++.+.
T Consensus 81 ~-~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 G-VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp S-TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C-chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 7 6788899999999999999999999998765
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.39 E-value=4.6e-12 Score=119.03 Aligned_cols=137 Identities=15% Similarity=0.272 Sum_probs=91.1
Q ss_pred CEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
.+|||+|||+|.++.+|++. .|+++|+++.++..+. +.+...+.++.+.+.|....+++ ++||+|+++. ++++..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~~ 108 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTV-VFMFLQ 108 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEec-ccccCC
Confidence 47999999999999999874 5777777766665444 23344456677777777666665 5799999887 466653
Q ss_pred --cHHHHHHHHHHhcCCCcEEEEEeC-C--CCCCC--hhhHHHHHHHHHHHHhCCCEEEEEEeceeEeecc
Q 012961 295 --RDGILLLELDRLLRPGGYFVYSSP-E--AYAHD--PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358 (452)
Q Consensus 295 --d~~~~L~ei~RvLkPGG~lvi~~p-~--~~~~~--~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~kp 358 (452)
+...+++++.|+|+|||++++..- . .+... ....-.-+++.++++ +|+++........|++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 446799999999999999665431 1 11100 011112356777665 59888877555455444
No 32
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.39 E-value=2.2e-12 Score=123.17 Aligned_cols=130 Identities=21% Similarity=0.256 Sum_probs=93.1
Q ss_pred EEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHc----C--CCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~r----g--~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
+|||||||+|.++..+++. .++++|+ ++.+++.++++ + .++.+...|....+++ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~-----s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTI-----SPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHH
Confidence 6999999999999988763 3455555 44444444432 2 2467788887666665 5899999877
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChh-------hHHHHHHHHHHHHhCCCEEEEEEeceeE
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-------NRRIWNAMYDLLKSMCWKIVSKKDQTVI 354 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~-------~~~~~~~l~~ll~~~Gf~~v~~~~~~~i 354 (452)
++++..+...+++++.++|+|||++++.++........ ......++.+++++.||+++...+....
T Consensus 76 -~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 76 -VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLE 148 (224)
T ss_pred -HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence 67888888999999999999999999987532100000 0112357888999999999988776543
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.38 E-value=1.6e-12 Score=110.01 Aligned_cols=101 Identities=24% Similarity=0.335 Sum_probs=74.5
Q ss_pred CCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHH-cCCCeEEEEecC-CCCCCCCCCceEEEecc-c
Q 012961 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGT-KRLPYPSRSFELAHCSR-C 288 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~-rg~~~~~~~~d~-~~lp~~d~sFDlVv~s~-~ 288 (452)
..+|||||||+|.++..+++ .+++++|+++.++..+....... ...++.+...|+ ...... +.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCc
Confidence 34899999999999999987 26777877777665555433222 246789999998 444443 5699999887 3
Q ss_pred ccccc--ccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWL--QRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~--~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
..++. ++...+++++.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22222 455779999999999999999975
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.37 E-value=6.2e-12 Score=122.45 Aligned_cols=127 Identities=16% Similarity=0.227 Sum_probs=83.6
Q ss_pred CCEEEEECCCCchHHHHHhh------CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEecCCCCCCCCCCceEEEeccc
Q 012961 216 IRNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~------~~v~~vdis~~dis~~~~~~A~~r-g~~~~~~~~d~~~lp~~d~sFDlVv~s~~ 288 (452)
..+|||||||+|..+..+++ ..++++|+++.++..+..+.+... ..++.+..+|+..++++ .+|+|+++.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~- 133 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF- 133 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh-
Confidence 35899999999999887765 256667666666555443332211 22578888998888765 499999877
Q ss_pred cccccccH--HHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEE
Q 012961 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (452)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 345 (452)
++|++++. ..++++++++|||||.|++++.............+.......+..||..
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 192 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSE 192 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCH
Confidence 57776543 5699999999999999999874332222111112233334445566653
No 35
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.37 E-value=9.4e-12 Score=120.31 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=73.4
Q ss_pred CCEEEEECCCCchHHHHHhhC------CCccccCChhhhhHHHHHHHHHc--CCCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~------~v~~vdis~~dis~~~~~~A~~r--g~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
..+|||||||+|.++..+++. .++++|+++.++..+.... ... ..++.+..+|+..++++ .+|+|+++.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI-AAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHH-HhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 458999999999999888752 3666666555544433222 111 23578889999888875 489999887
Q ss_pred cccccccc--HHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 288 CRIDWLQR--DGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 288 ~~l~~~~d--~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
++||..+ ...++++++|+|+|||.++++++.
T Consensus 131 -~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 131 -TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred -chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 5777643 467999999999999999998753
No 36
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.35 E-value=5.8e-12 Score=116.59 Aligned_cols=129 Identities=22% Similarity=0.277 Sum_probs=95.6
Q ss_pred CCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC-C-CCCCCCceEEEecccccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~-l-p~~d~sFDlVv~s~~~l~~~ 293 (452)
+.+|||+|||.|.+..+|.+. ..++..+.+++++.+..+.++|.+ ++++|++. | .|++++||.|+++. +++.+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~--Viq~Dld~gL~~f~d~sFD~VIlsq-tLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVS--VIQGDLDEGLADFPDQSFDYVILSQ-TLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCC--EEECCHHHhHhhCCCCCccEEehHh-HHHhH
Confidence 458999999999999999874 244555667778888888888876 45666433 4 48999999999999 68999
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEeCCC-C----------------------CCChhh--HHHHHHHHHHHHhCCCEEEEE
Q 012961 294 QRDGILLLELDRLLRPGGYFVYSSPEA-Y----------------------AHDPEN--RRIWNAMYDLLKSMCWKIVSK 348 (452)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvi~~p~~-~----------------------~~~~~~--~~~~~~l~~ll~~~Gf~~v~~ 348 (452)
.+++.+|+|+.|+ |...+++.|+. + +++..+ .-...+++++.++.|+++++.
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 9999999999777 55777777642 1 111111 123468999999999998876
Q ss_pred Eece
Q 012961 349 KDQT 352 (452)
Q Consensus 349 ~~~~ 352 (452)
....
T Consensus 166 ~~~~ 169 (193)
T PF07021_consen 166 VFLD 169 (193)
T ss_pred EEEc
Confidence 6443
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.34 E-value=1.5e-11 Score=114.84 Aligned_cols=119 Identities=19% Similarity=0.168 Sum_probs=89.5
Q ss_pred CCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
+.+|||||||+|.++..++. ..|+++|+++.++..+. +.+++.+. ++.+...|..+++. +++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~-~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR-EVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 45899999999999988874 35777777776665554 33333343 48888899888776 67899999754
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
..+...+++++.++|||||++++..+... -.++.++.+..||.+.+...
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~~---------~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRDP---------EEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCCh---------HHHHHHHHHhcCceEeeeEE
Confidence 24567899999999999999999865432 34688888999998776543
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.31 E-value=1.1e-12 Score=109.64 Aligned_cols=93 Identities=28% Similarity=0.493 Sum_probs=67.5
Q ss_pred EEEECCCCchHHHHHhhCC--CccccCChhhhhHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 219 VLDVGCGVASFGAYLLSHD--IIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 219 VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~~~~~~A~~r----g~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
|||+|||+|..+..+...- .....+.+.|+++.++..++++ +.++.+.+.|+.++++.+++||+|+|+.++++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999988531 0113444445555555555544 468999999999999888899999997766777
Q ss_pred cccH--HHHHHHHHHhcCCCc
Q 012961 293 LQRD--GILLLELDRLLRPGG 311 (452)
Q Consensus 293 ~~d~--~~~L~ei~RvLkPGG 311 (452)
..+. ..+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 6543 669999999999998
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.31 E-value=1.2e-11 Score=123.13 Aligned_cols=131 Identities=18% Similarity=0.347 Sum_probs=88.7
Q ss_pred CEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
.+|||||||+|.++.+|++. .|+++|+++.++..+. +.+.+.+.++.+...|....++ +++||+|++.. +++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~-vl~~l~ 198 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTV-VLMFLN 198 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcc-hhhhCC
Confidence 37999999999999999874 5666766666554433 3444556677888888776655 57899999887 577664
Q ss_pred --cHHHHHHHHHHhcCCCcEEEEEeCCC---CCCC-h-hhHHHHHHHHHHHHhCCCEEEEEEece
Q 012961 295 --RDGILLLELDRLLRPGGYFVYSSPEA---YAHD-P-ENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (452)
Q Consensus 295 --d~~~~L~ei~RvLkPGG~lvi~~p~~---~~~~-~-~~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (452)
+...+++++.++|+|||++++..+.. +... + ...-.-.++.++++ +|+++......
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~e~~ 261 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYNENV 261 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEeccc
Confidence 44679999999999999977654211 1000 0 00111246777775 49988775443
No 40
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.30 E-value=5.5e-11 Score=112.53 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcC---CCeEEEEecCCCCCCCCCCceEEEecccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg---~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~ 291 (452)
+..+|||+|||+|.++..++........+.+.|+++.++..++++. .++.+...|+.++++++++||+|+++. .++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~-~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF-GLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee-eeC
Confidence 3458999999999999988864111123344455555555555442 357788889888888778999999877 578
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+..+...+++++.++|+|||++++...
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888889999999999999999998654
No 41
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.28 E-value=9.4e-12 Score=116.06 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=97.6
Q ss_pred CCCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
...++|.|+|||+|..+..|+++ ..+..+++.|.|.+|+..|+++.+++.|..+|+..+. ++..+|+++++. +++|+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vlqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VLQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hhhhc
Confidence 35678999999999999999875 3344566667788888889999999999999998885 347899999555 89999
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCE
Q 012961 294 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (452)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~ 344 (452)
++...+|..+...|.|||.+.+..|...... ...-|.+.+++.-|.
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN~dep-----sH~~mr~~A~~~p~~ 151 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDNLDEP-----SHRLMRETADEAPFA 151 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCccCch-----hHHHHHHHHhcCchh
Confidence 9999999999999999999999998765322 223455666555443
No 42
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.28 E-value=9.1e-12 Score=119.45 Aligned_cols=129 Identities=19% Similarity=0.301 Sum_probs=88.3
Q ss_pred CCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcC-------C----CeEEEEecCCCCCCCCCCceEEE
Q 012961 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-------I----PSTLGVLGTKRLPYPSRSFELAH 284 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg-------~----~~~~~~~d~~~lp~~d~sFDlVv 284 (452)
+++|||+|||.|.++..|+.. +.+++++|+++.+++.|++.. . .+.+...+.+.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 357999999999999999974 334444455555556655541 1 1233444455443 4599999
Q ss_pred eccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC----CC-----------CChhhHHHH------HHHHHHHHhCCC
Q 012961 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA----YA-----------HDPENRRIW------NAMYDLLKSMCW 343 (452)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~----~~-----------~~~~~~~~~------~~l~~ll~~~Gf 343 (452)
|+. +++|..++..++..+.++|||||.++|++... |. -.+.....| .++..+++..++
T Consensus 164 cse-vleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 164 CSE-VLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred eHH-HHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 999 79999999999999999999999999987421 10 011112234 377888888888
Q ss_pred EEEEEEec
Q 012961 344 KIVSKKDQ 351 (452)
Q Consensus 344 ~~v~~~~~ 351 (452)
.+....+.
T Consensus 243 ~v~~v~G~ 250 (282)
T KOG1270|consen 243 QVNDVVGE 250 (282)
T ss_pred chhhhhcc
Confidence 77665543
No 43
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.27 E-value=9.1e-11 Score=112.22 Aligned_cols=130 Identities=18% Similarity=0.280 Sum_probs=92.8
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHc------CCCeEEEEecCCCCCCCCCCceEEE
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRLPYPSRSFELAH 284 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~r------g~~~~~~~~d~~~lp~~d~sFDlVv 284 (452)
..+|||||||+|.++..++.. .++++|+++. +++.++++ ..++.+...|...++++.++||+|+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~-----~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG-----MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH-----HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEE
Confidence 358999999999999888753 3555555544 44444433 2357788888888887778999999
Q ss_pred eccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCC------------------------hhhHH----------H
Q 012961 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD------------------------PENRR----------I 330 (452)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~------------------------~~~~~----------~ 330 (452)
++. .+++..+...++.++.++|+|||++++......... ..... .
T Consensus 127 ~~~-~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (239)
T PRK00216 127 IAF-GLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPD 205 (239)
T ss_pred Eec-ccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCC
Confidence 887 578888889999999999999999988653211100 00000 1
Q ss_pred HHHHHHHHHhCCCEEEEEEec
Q 012961 331 WNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 331 ~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
-+++.++++++||+.+..+..
T Consensus 206 ~~~~~~~l~~aGf~~~~~~~~ 226 (239)
T PRK00216 206 QEELAAMLEEAGFERVRYRNL 226 (239)
T ss_pred HHHHHHHHHhCCCceeeeeee
Confidence 146888999999998877654
No 44
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.27 E-value=2e-11 Score=115.41 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=87.3
Q ss_pred CCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecC-CCCC--CCCCCceEEEeccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLP--YPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~-~~lp--~~d~sFDlVv~s~~ 288 (452)
..+|||||||+|.++..+++. .++++|+++.++..+..+.......++.+.++|+ +.++ +++++||+|++.+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 458999999999999988752 5677777766665444333222224578888998 7766 77789999998653
Q ss_pred cccccc--------cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEE
Q 012961 289 RIDWLQ--------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (452)
Q Consensus 289 ~l~~~~--------d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 346 (452)
.+|.. ....+++++.++|||||+++++.+.. .....+.+.+++.||.+.
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------HHHHHHHHHHHhCccccc
Confidence 33322 13568999999999999999976432 234577888888898654
No 45
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.26 E-value=5.6e-11 Score=114.54 Aligned_cols=166 Identities=16% Similarity=0.259 Sum_probs=113.3
Q ss_pred cceeecCceeecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC--CCccccCChhh
Q 012961 170 HWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPND 247 (452)
Q Consensus 170 ~W~~~~g~~~~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~d 247 (452)
.|.+-..+...+.|.|.+|--..+++.+.+...-. ...++....++||||+|.|..+..|+.. .|.+. +
T Consensus 53 ~~f~S~T~iNG~LgRG~MFvfS~~Q~~~LL~~~~~----~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aT-----E 123 (265)
T PF05219_consen 53 SWFMSKTDINGILGRGSMFVFSEEQFRKLLRISGF----SWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYAT-----E 123 (265)
T ss_pred HHHHhHHhHhhhhcCCcEEEecHHHHHHHhhhhcc----CCCCcccCCceEEecCCCcHHHHHHHhhcceEEee-----c
Confidence 44445555666788888988888888776652211 1122234568999999999999999873 44444 5
Q ss_pred hhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe--CC------
Q 012961 248 VHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS--PE------ 319 (452)
Q Consensus 248 is~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~--p~------ 319 (452)
+|..|+..-+++|..+ .+..++.-.+.+||+|.|.+ ++.-..+|..+|+++++.|+|+|+++++. |.
T Consensus 124 ~S~~Mr~rL~~kg~~v----l~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~ 198 (265)
T PF05219_consen 124 ASPPMRWRLSKKGFTV----LDIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEF 198 (265)
T ss_pred CCHHHHHHHHhCCCeE----EehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEc
Confidence 5666667777777542 33333433356899999999 78888999999999999999999999864 21
Q ss_pred -C--CCCChh----hHHHH----HHHHHHHHhCCCEEEEEE
Q 012961 320 -A--YAHDPE----NRRIW----NAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 320 -~--~~~~~~----~~~~~----~~l~~ll~~~Gf~~v~~~ 349 (452)
. .....+ ....| ..+.++++.+||+++.+.
T Consensus 199 ~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 199 GGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred CCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0 111110 11233 355688999999998765
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.26 E-value=1.4e-12 Score=108.45 Aligned_cols=93 Identities=26% Similarity=0.398 Sum_probs=54.6
Q ss_pred EEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC-C-CCCCceEEEecccccccc
Q 012961 220 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 220 LDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp-~-~d~sFDlVv~s~~~l~~~ 293 (452)
||||||+|.++..+++. .++++|+++.++..+..+..............+..+.. . ..++||+|+++. ++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 79999999999888763 67788888887754443333322333333333333322 1 225899999887 78888
Q ss_pred ccHHHHHHHHHHhcCCCcEE
Q 012961 294 QRDGILLLELDRLLRPGGYF 313 (452)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~l 313 (452)
++...+++.+.++|+|||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 47
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.25 E-value=7.4e-11 Score=109.68 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=84.1
Q ss_pred CCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
+.+|||||||+|.++..++. ..|+++|.++.++..+. +.+++.+. ++.+..+|+.+++. +++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhccc-cCCccEEEehh--h
Confidence 35899999999998888764 35778887776664443 33333443 57888899887753 57899998753 3
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
.+...+++.+.++|+|||.+++..... .......+.+.+...|++.++....
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~~~------~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKGKK------YLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcCCC------cHHHHHHHHHhhhhcCceEeecccc
Confidence 344568899999999999999865322 1222334444455578888776544
No 48
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.24 E-value=7.1e-12 Score=117.71 Aligned_cols=134 Identities=26% Similarity=0.338 Sum_probs=99.8
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC-CC-CCCCCceEEEeccccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP-YPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~-lp-~~d~sFDlVv~s~~~l~~ 292 (452)
..+++||+|||||..+..|... +-++.+.|+|++|+..|.+++.--.+.++++.. ++ ..++.||+|++.. ++.|
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-Vl~Y 200 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-VLPY 200 (287)
T ss_pred ccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh-HHHh
Confidence 4789999999999999999874 345555678888889999998655555555442 22 4457899999766 8999
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCC----hhhH---HHHHHHHHHHHhCCCEEEEEEece
Q 012961 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHD----PENR---RIWNAMYDLLKSMCWKIVSKKDQT 352 (452)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~----~~~~---~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (452)
+.+.+.++--+...|+|||.|.++.-..-... .... +.-..+..++...||+++..++.+
T Consensus 201 lG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 201 LGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred hcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 99999999999999999999999874321100 0010 112467889999999999887654
No 49
>PRK06202 hypothetical protein; Provisional
Probab=99.23 E-value=1.5e-10 Score=111.43 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=88.6
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg--~~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
+..+|||||||+|.++..|++. .-....+.+.|+++.+++.|+++. .++.+.+.+...++.++++||+|+|+. +
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~-~ 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH-F 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC-e
Confidence 4468999999999998888641 111234555566666667766652 345666777777777778999999998 5
Q ss_pred ccccccH--HHHHHHHHHhcCCCcEEEEEeCCC-------------------CC-CCh-hhHH---HHHHHHHHHHhCCC
Q 012961 290 IDWLQRD--GILLLELDRLLRPGGYFVYSSPEA-------------------YA-HDP-ENRR---IWNAMYDLLKSMCW 343 (452)
Q Consensus 290 l~~~~d~--~~~L~ei~RvLkPGG~lvi~~p~~-------------------~~-~~~-~~~~---~~~~l~~ll~~~Gf 343 (452)
+||.++. ..+++++.|+++ |.+++.+... +. .+. .... .-+++.+++++ ||
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 8887765 469999999998 4555443211 00 111 1111 12588888888 99
Q ss_pred EEEEEEecee
Q 012961 344 KIVSKKDQTV 353 (452)
Q Consensus 344 ~~v~~~~~~~ 353 (452)
++...-....
T Consensus 216 ~~~~~~~~~~ 225 (232)
T PRK06202 216 RVERQWPFRY 225 (232)
T ss_pred eEEeccceee
Confidence 8776554443
No 50
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.22 E-value=3.5e-11 Score=118.42 Aligned_cols=103 Identities=16% Similarity=0.256 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCch----HHHHHhhCC----CccccCChhhhhHHHHHHHHHcC--------------------------
Q 012961 215 NIRNVLDVGCGVAS----FGAYLLSHD----IIAMSLAPNDVHENQIQFALERG-------------------------- 260 (452)
Q Consensus 215 ~~~~VLDIGCG~G~----~~~~La~~~----v~~vdis~~dis~~~~~~A~~rg-------------------------- 260 (452)
...+|||+|||+|. ++..|++.. ...+.+.+.|+++.+++.|++.-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999995 455554421 11345556666666666666531
Q ss_pred ------CCeEEEEecCCCCCCCCCCceEEEeccccccccccH--HHHHHHHHHhcCCCcEEEEEeC
Q 012961 261 ------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 261 ------~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvi~~p 318 (452)
..+.+.+.|+...++++++||+|+|.+ +++|++++ ..++++++++|+|||+|++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn-vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRN-VLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEech-hHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 146788889888887788999999988 56666433 5799999999999999999653
No 51
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=4.3e-11 Score=110.91 Aligned_cols=100 Identities=21% Similarity=0.336 Sum_probs=79.4
Q ss_pred EEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHHHcCCCeE-EEEecCCCCC-CCCCCceEEEeccccccc
Q 012961 218 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP-YPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~~rg~~~~-~~~~d~~~lp-~~d~sFDlVv~s~~~l~~ 292 (452)
.||+||||||..-.++-. ..|+++|-++.+-+-+...++.++..++. +++++.+++| ++++++|.|+|.. ++--
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl-vLCS 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL-VLCS 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE-EEec
Confidence 589999999987666652 36777777776655555444555555665 8899999998 8999999999998 4666
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 293 LQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
.+++.+.|+|+.|+|||||++++...
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 78999999999999999999998653
No 52
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.20 E-value=1.2e-10 Score=111.17 Aligned_cols=133 Identities=19% Similarity=0.226 Sum_probs=86.4
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg--~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
+..+|||||||+|.++..++.. .++++|+++.++..+..+. ...+ .++.+.+.|+..++ ++||+|++...+.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~-~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRA-QGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 3468999999999999999864 4556665555543333222 1222 25788888887765 6899999887443
Q ss_pred ccc-ccHHHHHHHHHHhcCCCcEEEEEeCCCCC-----------CChh----hHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 291 DWL-QRDGILLLELDRLLRPGGYFVYSSPEAYA-----------HDPE----NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 291 ~~~-~d~~~~L~ei~RvLkPGG~lvi~~p~~~~-----------~~~~----~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
++. .+...+++++.+++++++++.+.....+. .... ....-+++.++++++||+++..+..
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 432 23467899999999987776654321110 0000 0012258999999999999877643
No 53
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.19 E-value=2.7e-10 Score=106.68 Aligned_cols=126 Identities=20% Similarity=0.267 Sum_probs=86.4
Q ss_pred CEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC-C-CCCCCCceEEEeccccccccc
Q 012961 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~-l-p~~d~sFDlVv~s~~~l~~~~ 294 (452)
.+|||||||+|.++..+++.. ..++.+.|+++.+++.+++++ +.+...|+.. + ++++++||+|+|+. +++|+.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~-~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQ-TLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhh-HhHcCc
Confidence 489999999999999887531 223344456666667776654 4566777654 4 47778999999987 688999
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCCC----------------------CC-CC--hhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 295 RDGILLLELDRLLRPGGYFVYSSPEA----------------------YA-HD--PENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~p~~----------------------~~-~~--~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
++..+++++.|++++ .+++.|.. +. .+ .......+++.++++++||+++...
T Consensus 90 d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 90 NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 999999999888764 34443321 00 00 0111234689999999999998765
Q ss_pred e
Q 012961 350 D 350 (452)
Q Consensus 350 ~ 350 (452)
.
T Consensus 167 ~ 167 (194)
T TIGR02081 167 A 167 (194)
T ss_pred E
Confidence 3
No 54
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.19 E-value=1.1e-10 Score=124.01 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=90.1
Q ss_pred CCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHc---CCCeEEEEecCC--CCCCCCCCceEEEeccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTK--RLPYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~r---g~~~~~~~~d~~--~lp~~d~sFDlVv~s~~ 288 (452)
..+|||||||+|.++..|++. .|+++|+++.++. .+++. ..++.+...|+. .+++++++||+|+|..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~-----~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~- 111 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIK-----KNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW- 111 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHH-----HHHHHhccCCceEEEEecccccccCCCCCCEEEEehhh-
Confidence 348999999999999999874 5667766665553 33322 245778888874 5678888999999888
Q ss_pred ccccccc--HHHHHHHHHHhcCCCcEEEEEeCCCCCC-------ChhhHHHHHHHHHHHHhCCCEEEEE
Q 012961 289 RIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSK 348 (452)
Q Consensus 289 ~l~~~~d--~~~~L~ei~RvLkPGG~lvi~~p~~~~~-------~~~~~~~~~~l~~ll~~~Gf~~v~~ 348 (452)
+++|+.+ ...+++++.|+|||||++++.+...... ++........+.+++.++||.....
T Consensus 112 ~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 112 LLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDG 180 (475)
T ss_pred hHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCC
Confidence 5777665 3679999999999999999976432211 1222223456778888888876543
No 55
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.18 E-value=8.3e-11 Score=109.87 Aligned_cols=136 Identities=20% Similarity=0.405 Sum_probs=92.1
Q ss_pred CCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
+.++||+|||.|..+.+|++. .|+++|+++..+... .+.|.+.+.++...+.|.....++ +.||+|++.. +++|+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l-~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~-v~~fL 107 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKL-QRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTV-VFMFL 107 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHH-HHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEES-SGGGS
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHH-HHHHhhcCceeEEEEecchhcccc-CCcCEEEEEE-EeccC
Confidence 348999999999999999985 677888887776554 367777888999999998888776 6899999765 56665
Q ss_pred ccH--HHHHHHHHHhcCCCcEEEEEeC---CCCCCChhhHH-HH--HHHHHHHHhCCCEEEEEEeceeEeec
Q 012961 294 QRD--GILLLELDRLLRPGGYFVYSSP---EAYAHDPENRR-IW--NAMYDLLKSMCWKIVSKKDQTVIWAK 357 (452)
Q Consensus 294 ~d~--~~~L~ei~RvLkPGG~lvi~~p---~~~~~~~~~~~-~~--~~l~~ll~~~Gf~~v~~~~~~~iw~k 357 (452)
... ..+++.+...++|||++++... +.+.. +.... .+ .++..... +|+++.......--+|
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~-~~~~~f~~~~~EL~~~y~--dW~il~y~E~~g~~h~ 176 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVTFMETPDYPC-PSPFPFLLKPGELREYYA--DWEILKYNEDVGELHR 176 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS---SS--S--B-TTHHHHHTT--TSEEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCC-CCCCCcccCHHHHHHHhC--CCeEEEEEccccceee
Confidence 443 5689999999999999998542 11111 00100 11 25555554 7999987665544444
No 56
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.18 E-value=1.6e-10 Score=109.50 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=74.4
Q ss_pred CCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc-
Q 012961 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~- 294 (452)
..+|||||||+|.++..|++. ..+.++.+.|+++.+++.|+++..++.+.++|+.. |+++++||+|++.. +++|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~-vL~hl~p 120 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKG-VLIHINP 120 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECC-hhhhCCH
Confidence 457999999999999998763 12345666677777888888765667788888777 88889999999887 566653
Q ss_pred -cHHHHHHHHHHhcCCCcEEEEEe
Q 012961 295 -RDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 295 -d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
+...+++++.|++ ++++++..
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 3467899999998 56777755
No 57
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.17 E-value=1.6e-10 Score=108.40 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=83.9
Q ss_pred CEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC---CCCCCceEEEecccc
Q 012961 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSRCR 289 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp---~~d~sFDlVv~s~~~ 289 (452)
.+|||||||+|.++..++.. .++++|++..++..+..+..+....++.++.+|+..++ +++++||.|++++ .
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~-p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF-P 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC-C
Confidence 47999999999999998863 57777777666655443332222236888888886653 4567899999765 3
Q ss_pred ccccccH--------HHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCC-CEEEE
Q 012961 290 IDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 347 (452)
Q Consensus 290 l~~~~d~--------~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~G-f~~v~ 347 (452)
.+|.... ..+++++.|+|||||.+++.+... ..++++.+.+...+ |+.+.
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~--------~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE--------PLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH--------HHHHHHHHHHHhCCCeEecc
Confidence 4443321 468999999999999999876322 23455666666655 76653
No 58
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.17 E-value=4.3e-10 Score=108.06 Aligned_cols=134 Identities=16% Similarity=0.321 Sum_probs=90.9
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC-CCCCCceEEEecccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRID 291 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp-~~d~sFDlVv~s~~~l~ 291 (452)
+..+|||||||+|.++..+++. .++++|+++..+..+... ....+..+.+...+...++ ..+++||+|+++. .++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~-~l~ 125 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLH-ALESGLKIDYRQTTAEELAAEHPGQFDVVTCME-MLE 125 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHH-HHHcCCceEEEecCHHHhhhhcCCCccEEEEhh-Hhh
Confidence 3458999999999999888764 355555554443322211 1122445667777766654 3457899999987 577
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCC------------------hhhHH---HHHHHHHHHHhCCCEEEEEEe
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD------------------PENRR---IWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~------------------~~~~~---~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
+..+...+++++.++|+|||.++++.+...... ..... .-+++.+++++.||+++....
T Consensus 126 ~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 126 HVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 888888999999999999999999875321100 00000 114688999999999986653
No 59
>PRK04266 fibrillarin; Provisional
Probab=99.17 E-value=4.6e-10 Score=107.99 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=87.1
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC----CCCCCCCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~----lp~~d~sFDlVv~s 286 (452)
+..+|||+|||+|.++..|++. .|+++|+++.++.... +.|+++ .++.++.+|... .+++ ++||+|++.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d 148 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQD 148 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEEC
Confidence 3458999999999999999874 5777877777665443 344443 457777778654 1233 569999854
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEeCCCC-CCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~-~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
.. . ......++.++.|+|||||+++++.+... .........+++..+.++++||+.+...+.
T Consensus 149 ~~-~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 149 VA-Q--PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred CC-C--hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 31 1 11224578999999999999999644210 011111234456679999999999877653
No 60
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.17 E-value=3e-10 Score=108.19 Aligned_cols=134 Identities=16% Similarity=0.317 Sum_probs=92.4
Q ss_pred CCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCC-CCCceEEEecccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~-d~sFDlVv~s~~~l~ 291 (452)
..+|||+|||+|.++..+++. .++++|+++..+..+..+.. ..+. ++.+...+...++.. .++||+|++.. .++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~-~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME-VLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehh-HHH
Confidence 458999999999999888763 45556555544433332222 2234 477777777766544 37899999887 688
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCC---------------hh---hHH---HHHHHHHHHHhCCCEEEEEEe
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD---------------PE---NRR---IWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~---------------~~---~~~---~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
+..++..++.++.++|+|||.++++.+...... +. ... .-.++.++++++||++++.+.
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 889999999999999999999998764321000 00 000 124688999999999988764
Q ss_pred c
Q 012961 351 Q 351 (452)
Q Consensus 351 ~ 351 (452)
.
T Consensus 204 ~ 204 (224)
T TIGR01983 204 L 204 (224)
T ss_pred E
Confidence 3
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.17 E-value=2.8e-10 Score=112.05 Aligned_cols=133 Identities=23% Similarity=0.240 Sum_probs=93.3
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHc-CCCe--EEEEecCCCCCCCCCCceEEEeccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPS--TLGVLGTKRLPYPSRSFELAHCSRC 288 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~r-g~~~--~~~~~d~~~lp~~d~sFDlVv~s~~ 288 (452)
.+++|||||||.|+++..|+.+ .|+|+|-+..-. .+-+++++- +... ...-...+++|. .+.||+|+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG- 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG- 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee-
Confidence 4569999999999999888863 578887665443 333333332 2232 233346888887 68999999887
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC------------C-CCCCChh--hHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP------------E-AYAHDPE--NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p------------~-~~~~~~~--~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
++.|..++-..|.++...|+|||.+++.+- . .|..... ....-..+...++++||+.++.-+.
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 788899999999999999999999997542 1 1111110 0112368899999999998866543
No 62
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.16 E-value=1.1e-09 Score=102.03 Aligned_cols=122 Identities=11% Similarity=0.020 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
+..+|||||||+|.++..++.. .++++|+++..+..+..+..+....++.+...+.. .+++ ++||+|++... .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-G 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-c
Confidence 3458999999999999988753 56777777666554442222222234667766653 3343 57999998652 2
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
+ ....++.++.++|+|||++++.... .....++..++++.||+.++...
T Consensus 108 ~---~~~~~l~~~~~~Lk~gG~lv~~~~~--------~~~~~~~~~~l~~~g~~~~~~~~ 156 (187)
T PRK08287 108 G---NLTAIIDWSLAHLHPGGRLVLTFIL--------LENLHSALAHLEKCGVSELDCVQ 156 (187)
T ss_pred c---CHHHHHHHHHHhcCCCeEEEEEEec--------HhhHHHHHHHHHHCCCCcceEEE
Confidence 2 3456899999999999999986532 12356788899999998766543
No 63
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.16 E-value=1.5e-10 Score=117.97 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEE
Q 012961 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLG 266 (452)
Q Consensus 191 ~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~ 266 (452)
..+.-.+.+.+.++.. ...+|||+|||+|.++..+++. .++++|++..++..+.... +..+....+.
T Consensus 180 ~lD~gt~lLl~~l~~~--------~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl-~~n~l~~~~~ 250 (342)
T PRK09489 180 GLDVGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL-AANGLEGEVF 250 (342)
T ss_pred CCCHHHHHHHHhcccc--------CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCEEE
Confidence 3445555555555421 1237999999999999998863 4667777766665554333 3345566666
Q ss_pred EecCCCCCCCCCCceEEEecccccccc-----ccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012961 267 VLGTKRLPYPSRSFELAHCSRCRIDWL-----QRDGILLLELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 267 ~~d~~~lp~~d~sFDlVv~s~~~l~~~-----~d~~~~L~ei~RvLkPGG~lvi~~p~~ 320 (452)
..|.... .++.||+|+|+. .+|+. .....+++++.+.|+|||.|+|+....
T Consensus 251 ~~D~~~~--~~~~fDlIvsNP-PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 251 ASNVFSD--IKGRFDMIISNP-PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred Ecccccc--cCCCccEEEECC-CccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 6665432 257899999986 45542 234679999999999999999988654
No 64
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.15 E-value=1.5e-10 Score=108.26 Aligned_cols=134 Identities=20% Similarity=0.304 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHcCCCeEEEEec-
Q 012961 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG- 269 (452)
Q Consensus 193 ~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d- 269 (452)
....+...+++.+ +.+ ...-|||||||+|..+..|.+ +..+|+|+++.|+ +.|.++.....+..+|
T Consensus 34 ~em~eRaLELLal-----p~~-~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML-----~~a~~~e~egdlil~DM 102 (270)
T KOG1541|consen 34 AEMAERALELLAL-----PGP-KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSML-----EQAVERELEGDLILCDM 102 (270)
T ss_pred HHHHHHHHHHhhC-----CCC-CCcEEEEeccCCCcchheeccCCceEEeecCCHHHH-----HHHHHhhhhcCeeeeec
Confidence 4444445555543 332 567899999999999999886 3556776666555 4444443444566666
Q ss_pred CCCCCCCCCCceEEEecccccccccc-------H----HHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHH
Q 012961 270 TKRLPYPSRSFELAHCSRCRIDWLQR-------D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 338 (452)
Q Consensus 270 ~~~lp~~d~sFDlVv~s~~~l~~~~d-------~----~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll 338 (452)
-+-+||..++||.|++.. ++.|.-+ + ..++..++.+|++|+..++.. .+++....+.+...+
T Consensus 103 G~GlpfrpGtFDg~ISIS-AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf------Ypen~~q~d~i~~~a 175 (270)
T KOG1541|consen 103 GEGLPFRPGTFDGVISIS-AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF------YPENEAQIDMIMQQA 175 (270)
T ss_pred CCCCCCCCCccceEEEee-eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe------cccchHHHHHHHHHH
Confidence 377899999999999765 6788532 2 237888999999999999854 344445567788888
Q ss_pred HhCCCE
Q 012961 339 KSMCWK 344 (452)
Q Consensus 339 ~~~Gf~ 344 (452)
..+||.
T Consensus 176 ~~aGF~ 181 (270)
T KOG1541|consen 176 MKAGFG 181 (270)
T ss_pred HhhccC
Confidence 899985
No 65
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.15 E-value=5.5e-10 Score=112.44 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=77.5
Q ss_pred CCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHc------CCCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~r------g~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
..+|||||||+|.++..|++. .|+++|+++.++..+..+. .+. ...+.+...|...+ +++||+|+|..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~-~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~ 220 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRA-KEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD 220 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence 458999999999999999874 4566665555554443222 111 12456777776554 47899999988
Q ss_pred ccccccccH-HHHHHHHHHhcCCCcEEEEEeCCCCCCCh-----------h-hHH----HHHHHHHHHHhCCCEEEEEE
Q 012961 288 CRIDWLQRD-GILLLELDRLLRPGGYFVYSSPEAYAHDP-----------E-NRR----IWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 288 ~~l~~~~d~-~~~L~ei~RvLkPGG~lvi~~p~~~~~~~-----------~-~~~----~~~~l~~ll~~~Gf~~v~~~ 349 (452)
.++|+..+. ..+++.+.+ +.+||.++...|..+.+.. . ... .-++++++++++||+++..+
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 544443322 335666665 4566665543343211100 0 000 12689999999999987544
No 66
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.14 E-value=2e-10 Score=106.68 Aligned_cols=98 Identities=23% Similarity=0.349 Sum_probs=70.5
Q ss_pred CCCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHc---CCCeEEEEecCCCCCCCCCCceEEEeccc
Q 012961 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~r---g~~~~~~~~d~~~lp~~d~sFDlVv~s~~ 288 (452)
...+++||+|||.|.++..|+.+ .++++ |+++.+++.|++| ..++.+.+.+.... .|.++||+||++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~Llav-----Dis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE- 114 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAV-----DISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE- 114 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEE-----ES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEE-----eCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh-
Confidence 35568999999999999999985 44555 5556666777766 24588898887665 4678999999998
Q ss_pred ccccccc---HHHHHHHHHHhcCCCcEEEEEeC
Q 012961 289 RIDWLQR---DGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 289 ~l~~~~d---~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+++|+.+ ...++..+...|+|||.+++.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 7888764 35689999999999999999763
No 67
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.14 E-value=6.5e-10 Score=102.76 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=84.8
Q ss_pred CEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
.+|||+|||+|.++..++.. .++++|+++.++..+..+. ...+..+.+...|....+ .++||+|+++.. ++...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA-KLNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCceEEEEccccccc--CCcccEEEECCC-CCCCc
Confidence 47999999999999999874 3667776666554443222 233456777777865543 358999998753 22221
Q ss_pred c---------------------HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 295 R---------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 295 d---------------------~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
+ ...++.++.++|+|||.+++..+... .-.++..++++.||.......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------GEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------ChHHHHHHHHhCCCeEEEEEE
Confidence 1 24589999999999999999764321 124678888999998776554
No 68
>PRK06922 hypothetical protein; Provisional
Probab=99.13 E-value=1.6e-10 Score=124.43 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=73.4
Q ss_pred CCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC--CCCCCceEEEecccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp--~~d~sFDlVv~s~~~ 289 (452)
+.+|||||||+|.++..++.. .++++|+++.++..+..+ +...+.++.+..+|...++ +++++||+|+++. +
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar-l~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~-v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK-KQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS-I 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-hhhcCCCeEEEEcchHhCccccCCCCEEEEEEch-H
Confidence 458999999999998888752 455665555544333321 1122456677888988887 7889999999877 4
Q ss_pred cccc-------------ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 290 IDWL-------------QRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 290 l~~~-------------~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+|+. .+...+++++.|+|||||.+++.+.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5542 2446799999999999999999874
No 69
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1e-09 Score=108.63 Aligned_cols=124 Identities=19% Similarity=0.328 Sum_probs=85.2
Q ss_pred CCCEEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCC-CCceEEEeccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS-RSFELAHCSRCRI 290 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d-~sFDlVv~s~~~l 290 (452)
++++|||+|||+|.++...+. ..++|+|+++..+..+. +.++.++............+..+. +.||+|+++. +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI--L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI--L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccchhhcccCcccEEEehh--h
Confidence 556899999999999888876 35889999888776555 455555554211111122222333 5899999875 2
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
- .-...+..++.+.|||||+++++..-. ..-+.+.+.+.+.||.++.....
T Consensus 239 A--~vl~~La~~~~~~lkpgg~lIlSGIl~--------~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 239 A--EVLVELAPDIKRLLKPGGRLILSGILE--------DQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred H--HHHHHHHHHHHHHcCCCceEEEEeehH--------hHHHHHHHHHHhCCCeEeEEEec
Confidence 1 222568999999999999999987321 12356778888999998876543
No 70
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.11 E-value=2.8e-10 Score=108.18 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=67.7
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCceE
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp--------~~d~sFDl 282 (452)
..+|||||||+|.++..+++. .|+++|+++. ....++.++.+|+...+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 458999999999999988763 4777777651 11235778888887753 56788999
Q ss_pred EEeccccccccccH-----------HHHHHHHHHhcCCCcEEEEEeC
Q 012961 283 AHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 283 Vv~s~~~l~~~~d~-----------~~~L~ei~RvLkPGG~lvi~~p 318 (452)
|+|.. ..++..++ ..+|+++.++|+|||.|++...
T Consensus 121 V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 121 VMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99865 34443221 4589999999999999999653
No 71
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.11 E-value=9.6e-11 Score=107.68 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCC-eEEE
Q 012961 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLG 266 (452)
Q Consensus 192 ~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~-~~~~ 266 (452)
.+.-.+.+.+.+.. ....+|||+|||+|.++..++.. .|+++|+++..+..+..+ +...+.. +.+.
T Consensus 16 ~d~~t~lL~~~l~~--------~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n-~~~n~~~~v~~~ 86 (170)
T PF05175_consen 16 LDAGTRLLLDNLPK--------HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN-AERNGLENVEVV 86 (170)
T ss_dssp HHHHHHHHHHHHHH--------HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH-HHHTTCTTEEEE
T ss_pred CCHHHHHHHHHHhh--------ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-HHhcCccccccc
Confidence 34444455555542 13448999999999999999873 366776666555444322 2333444 7777
Q ss_pred EecCCCCCCCCCCceEEEecccccccccc-----HHHHHHHHHHhcCCCcEEEEEeC
Q 012961 267 VLGTKRLPYPSRSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 267 ~~d~~~lp~~d~sFDlVv~s~~~l~~~~d-----~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
..|.... .++++||+|+|+.- ++...+ ...++++..+.|+|||.+++...
T Consensus 87 ~~d~~~~-~~~~~fD~Iv~NPP-~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 87 QSDLFEA-LPDGKFDLIVSNPP-FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp ESSTTTT-CCTTCEEEEEE----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccc-ccccceeEEEEccc-hhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 7775442 33689999998752 333222 36689999999999999987654
No 72
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.10 E-value=1.5e-09 Score=108.17 Aligned_cols=118 Identities=17% Similarity=0.262 Sum_probs=78.5
Q ss_pred CCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHcCCC--eEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg~~--~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
..+|||+|||+|.++..++.. .|+++|+++.++..+..+ +...+.. +.+...+ ..+..+++||+|+++. ..
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n-~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~-~~ 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN-AELNQVSDRLQVKLIY--LEQPIEGKADVIVANI-LA 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCcceEEEecc--cccccCCCceEEEEec-CH
Confidence 358999999999998887753 577787777666554432 2233333 3333333 2334457899999865 22
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
+ ....++.++.++|||||+++++.... ...+++.+.+++. |+++...
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~~--------~~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGILE--------TQAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCcH--------hHHHHHHHHHHcc-CceeeEe
Confidence 2 23568999999999999999987432 2245677777766 8776544
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.09 E-value=2.4e-09 Score=103.63 Aligned_cols=122 Identities=21% Similarity=0.297 Sum_probs=82.8
Q ss_pred CEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEeccccc-
Q 012961 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI- 290 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s~~~l- 290 (452)
.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+. ++.+..+|... ++++++||+|+++.-.+
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 47999999999999999863 56677766665544432 2233344 37788888755 45668899999853111
Q ss_pred ----ccc--------------------ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEE
Q 012961 291 ----DWL--------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (452)
Q Consensus 291 ----~~~--------------------~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 346 (452)
+.. .....++.++.++|+|||.+++.... ..-+++.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---------~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---------DQGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------cHHHHHHHHHHhCCCCce
Confidence 000 01135789999999999999986521 112568888999999876
Q ss_pred EEE
Q 012961 347 SKK 349 (452)
Q Consensus 347 ~~~ 349 (452)
...
T Consensus 238 ~~~ 240 (251)
T TIGR03534 238 ETR 240 (251)
T ss_pred EEE
Confidence 554
No 74
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.09 E-value=3.8e-10 Score=102.75 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=68.8
Q ss_pred CeEEEEecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCC-------------------
Q 012961 262 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------------- 322 (452)
Q Consensus 262 ~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~------------------- 322 (452)
++.+.++|+.++|+++++||+|++++ ++++.++...++++++|+|||||.+++.+.....
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 105 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPV 105 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhh
Confidence 57899999999999999999999887 6888899999999999999999999987632110
Q ss_pred ----CChhhH-------H---HHHHHHHHHHhCCCEEEEEEec
Q 012961 323 ----HDPENR-------R---IWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 323 ----~~~~~~-------~---~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
...... . ..+++.++++++||+.+..+..
T Consensus 106 ~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~ 148 (160)
T PLN02232 106 ATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEI 148 (160)
T ss_pred hHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEEC
Confidence 000111 1 1258889999999988766543
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.09 E-value=1.5e-09 Score=92.89 Aligned_cols=98 Identities=15% Similarity=0.044 Sum_probs=68.0
Q ss_pred CCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC-CCCCCCCceEEEeccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~-lp~~d~sFDlVv~s~~~l 290 (452)
..+|||+|||+|.++..+++. .++++|+++..+..+..........++.+...|... ++...++||.|++... .
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~ 98 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS-G 98 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-c
Confidence 348999999999999999863 467777766655444432222222346777677554 3333468999998653 2
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
+ ....+++++.++|+|||++++..
T Consensus 99 ~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 G---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred h---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 23579999999999999999864
No 76
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.09 E-value=6.8e-10 Score=105.89 Aligned_cols=132 Identities=14% Similarity=0.003 Sum_probs=81.7
Q ss_pred CEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHH------------HHcCCCeEEEEecCCCCCCC-CCCce
Q 012961 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFA------------LERGIPSTLGVLGTKRLPYP-SRSFE 281 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A------------~~rg~~~~~~~~d~~~lp~~-d~sFD 281 (452)
.+|||+|||.|..+.+|+++ .|+++|+++..+..++.+.. ..++.++.+.++|+..++.. .+.||
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD 115 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVD 115 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcC
Confidence 48999999999999999985 66677666665543221110 00234578889998877642 35799
Q ss_pred EEEeccccccccccH-HHHHHHHHHhcCCCcEEEEEeCC---CCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 282 LAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPE---AYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 282 lVv~s~~~l~~~~d~-~~~L~ei~RvLkPGG~lvi~~p~---~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
.|+-..+.+|..++. ..+++.+.++|||||++++.+.. .....+...-.-+++.+++. .+|.+...+
T Consensus 116 ~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~ 186 (213)
T TIGR03840 116 AVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLE 186 (213)
T ss_pred EEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEe
Confidence 999776444433333 55999999999999986654321 11011111112245666664 356665444
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.09 E-value=1.9e-09 Score=108.09 Aligned_cols=128 Identities=20% Similarity=0.298 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCceEEEeccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~d~sFDlVv~s~~ 288 (452)
+..+|||||||+|.++..++++ +++++|+ +..+..+. +.+.+.+. ++.+..+|....++++ +|+|++++.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence 4468999999999999999864 3556665 33332222 33333343 4778888877666653 799988874
Q ss_pred cccccccH--HHHHHHHHHhcCCCcEEEEEeCCCCCC-Chhh---H---------------HHHHHHHHHHHhCCCEEEE
Q 012961 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH-DPEN---R---------------RIWNAMYDLLKSMCWKIVS 347 (452)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~lvi~~p~~~~~-~~~~---~---------------~~~~~l~~ll~~~Gf~~v~ 347 (452)
+|...+. ..++++++++|+|||++++.+...... .+.. . ..-+++.++++++||+.+.
T Consensus 225 -lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 225 -LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred -hhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 5544332 569999999999999999986421111 1100 0 0015688888888887664
No 78
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.09 E-value=9.4e-10 Score=113.12 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=82.4
Q ss_pred ceeecCCCCCCCccc-HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHH
Q 012961 177 EKINFPGGGTHFHDG-ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHEN 251 (452)
Q Consensus 177 ~~~~F~g~g~~f~~~-~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~ 251 (452)
....|......|... .+.-.+.+.+.++. ....+|||+|||+|.++..+++. .|+++|++..++..+
T Consensus 197 ~~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A 268 (378)
T PRK15001 197 TDWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASS 268 (378)
T ss_pred ceEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 344444444445332 34445555565552 11248999999999999999863 567777776665554
Q ss_pred HHHHHHHcC---CCeEEEEecCCCCCCCCCCceEEEecccccccc---c--cHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 252 QIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---Q--RDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 252 ~~~~A~~rg---~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~---~--d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
..+.+.... .++.+...|.... ++..+||+|+|+- -+|.. . ....++.++.++|+|||.|+++..
T Consensus 269 ~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP-Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 269 RLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP-PFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc-CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 433322211 2456666665332 3346899999975 33332 1 125689999999999999999864
No 79
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.08 E-value=1.5e-09 Score=110.21 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=87.7
Q ss_pred CCCEEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEeccc---
Q 012961 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC--- 288 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s~~--- 288 (452)
+..+|||+|||+|.++..++. ..++++|+++.++..+..+. +..+. ++.+..+|+.++++++++||+|++..-
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl-~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINL-EHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHH-HHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 345899999999998876654 46777877777765554333 23333 367888999999988889999998521
Q ss_pred --cccc--c-ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 289 --RIDW--L-QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 289 --~l~~--~-~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
.... . .-...++.++.++|+|||++++..|... ++..+++.+|| ++....
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFR-VVKRFE 315 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCc-chheee
Confidence 0110 1 1136799999999999999999876532 45678999999 766554
No 80
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=4.7e-10 Score=110.57 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=98.0
Q ss_pred CceeecCCCCCCCc-ccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhH
Q 012961 176 GEKINFPGGGTHFH-DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHE 250 (452)
Q Consensus 176 g~~~~F~g~g~~f~-~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~ 250 (452)
+....|......|. ...+.-.+.+.+.++.. ...+|||+|||.|.++..|++. .++-+|++...+..
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--------~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ 197 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPD--------LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVES 197 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCcc--------CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHH
Confidence 33455554444553 34566666777776642 1227999999999999999974 45556666655544
Q ss_pred HHHHHHHHcCCCe-EEEEecCCCCCCCCCCceEEEecccccccccc-H----HHHHHHHHHhcCCCcEEEEEeCCCCCCC
Q 012961 251 NQIQFALERGIPS-TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR-D----GILLLELDRLLRPGGYFVYSSPEAYAHD 324 (452)
Q Consensus 251 ~~~~~A~~rg~~~-~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d-~----~~~L~ei~RvLkPGG~lvi~~p~~~~~~ 324 (452)
+..+.+.. +... .+...| ...+..+ +||+|+|+- -+|--.+ . ..++.+..+.|++||.|.|+......+.
T Consensus 198 ar~Nl~~N-~~~~~~v~~s~-~~~~v~~-kfd~IisNP-Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~ 273 (300)
T COG2813 198 ARKNLAAN-GVENTEVWASN-LYEPVEG-KFDLIISNP-PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYE 273 (300)
T ss_pred HHHhHHHc-CCCccEEEEec-ccccccc-cccEEEeCC-CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChH
Confidence 44333333 3333 344333 3334444 899999876 3442211 1 3689999999999999999987544333
Q ss_pred hhhHHHHHHHHHHHHhCCCEEEE
Q 012961 325 PENRRIWNAMYDLLKSMCWKIVS 347 (452)
Q Consensus 325 ~~~~~~~~~l~~ll~~~Gf~~v~ 347 (452)
....+.|...+.+.+..||++.+
T Consensus 274 ~~L~~~Fg~v~~la~~~gf~Vl~ 296 (300)
T COG2813 274 KKLKELFGNVEVLAKNGGFKVLR 296 (300)
T ss_pred HHHHHhcCCEEEEEeCCCEEEEE
Confidence 33334444455555666666554
No 81
>PTZ00146 fibrillarin; Provisional
Probab=99.06 E-value=3.8e-09 Score=104.55 Aligned_cols=131 Identities=12% Similarity=0.088 Sum_probs=86.1
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC---CCCCCCCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~---lp~~d~sFDlVv~s 286 (452)
+..+|||+|||+|.++.++++. .|+++|+++.+. ..+++.+.++ .++.+++.|+.. +.....+||+|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 3458999999999999999873 488888875433 2344555554 467777788643 12233579999987
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEeCCCC-CCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~-~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
.. ...+...++.++.++|||||+|+|...... ...+.....+.+-.+.+++.||+.++...
T Consensus 210 va---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 210 VA---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred CC---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 62 223345677899999999999999543221 11111112233323778999999886654
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.06 E-value=3.1e-09 Score=103.74 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=76.4
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~ 291 (452)
+..+|||+|||+|.++..++.. .|+++|+++..+..+..+ +...+....+. ++..+.+||+|+++.. .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n-~~~~~~~~~~~------~~~~~~~fD~Vvani~-~- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN-AELNGVELNVY------LPQGDLKADVIVANIL-A- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEE------EccCCCCcCEEEEcCc-H-
Confidence 3458999999999988877653 366776666555444322 22223321111 1112237999997642 1
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
.....++.++.++|||||+++++.... ...+.+...+++.||+++....
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~--------~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILE--------EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcH--------hhHHHHHHHHHHCCCEEEEEEE
Confidence 223568999999999999999986432 1245788889999999876554
No 83
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.04 E-value=1.3e-09 Score=108.57 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=96.6
Q ss_pred ecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHH
Q 012961 180 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFA 256 (452)
Q Consensus 180 ~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A 256 (452)
..-.-|..|..|...-.+...+++.... .++.+|||||||+|.++...+. ..|+++|+++..+..+. +.+
T Consensus 132 I~idPg~AFGTG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~ 204 (295)
T PF06325_consen 132 IEIDPGMAFGTGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENA 204 (295)
T ss_dssp EEESTTSSS-SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHH
T ss_pred EEECCCCcccCCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHH
Confidence 3444555677777666666555554321 2345899999999988877765 36889999988775555 455
Q ss_pred HHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHH
Q 012961 257 LERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 336 (452)
Q Consensus 257 ~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ 336 (452)
+.++....+.+....+ ...+.||+|+++. .. .-...++..+.++|+|||+++++..-. ...+.+.+
T Consensus 205 ~~N~~~~~~~v~~~~~--~~~~~~dlvvANI-~~---~vL~~l~~~~~~~l~~~G~lIlSGIl~--------~~~~~v~~ 270 (295)
T PF06325_consen 205 ELNGVEDRIEVSLSED--LVEGKFDLVVANI-LA---DVLLELAPDIASLLKPGGYLILSGILE--------EQEDEVIE 270 (295)
T ss_dssp HHTT-TTCEEESCTSC--TCCS-EEEEEEES--H---HHHHHHHHHCHHHEEEEEEEEEEEEEG--------GGHHHHHH
T ss_pred HHcCCCeeEEEEEecc--cccccCCEEEECC-CH---HHHHHHHHHHHHhhCCCCEEEEccccH--------HHHHHHHH
Confidence 5556555554433222 3348899999765 11 222457888999999999999987322 22456777
Q ss_pred HHHhCCCEEEEEEe
Q 012961 337 LLKSMCWKIVSKKD 350 (452)
Q Consensus 337 ll~~~Gf~~v~~~~ 350 (452)
.+++ ||+++....
T Consensus 271 a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 271 AYKQ-GFELVEERE 283 (295)
T ss_dssp HHHT-TEEEEEEEE
T ss_pred HHHC-CCEEEEEEE
Confidence 7777 999877664
No 84
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.04 E-value=2.9e-10 Score=118.20 Aligned_cols=125 Identities=25% Similarity=0.481 Sum_probs=95.4
Q ss_pred CCCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
+..+.|+|+.+|.|.|+++|.+..|+.|.+.+. ...+.+....+||+-..++.. .+.++.=..+||+||+.. ++...
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~-lfs~~ 440 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADG-LFSLY 440 (506)
T ss_pred cceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhh-hhhhh
Confidence 568899999999999999999999999999988 556666777788764333322 344554448999999876 34332
Q ss_pred ---ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 294 ---QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 294 ---~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
-+...+|-|++|+|||||.++|.+ ......+++.+++.+.|+......
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD---------~~~vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRD---------TVDVLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEec---------cHHHHHHHHHHHHhCcceEEEEec
Confidence 234669999999999999999954 334567899999999998765543
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=99.03 E-value=8.2e-09 Score=98.90 Aligned_cols=123 Identities=17% Similarity=0.110 Sum_probs=81.2
Q ss_pred CCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
..+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+.++.+...|.... +++++||+|+++.-....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR-LNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCCC
Confidence 358999999999999988763 5667777665554433 22233355677777776543 456789999986321111
Q ss_pred cc--------------------cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEE
Q 012961 293 LQ--------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (452)
Q Consensus 293 ~~--------------------d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 348 (452)
.. ....++.++.++|||||++++...... ...++.+.+++.||.....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--------GVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--------CHHHHHHHHHHCCCCeEEE
Confidence 00 124578899999999999998654431 1345667778889865443
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=99.02 E-value=5.7e-09 Score=96.30 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCC---eEEEEecCCCCCCCCCCceEEEecccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~---~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
+..+|||+|||+|.++..++.. .++++|+++..+..+..+. ...+.. +.+...|... ++.+++||+|+++...
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 3458999999999999998864 5666666665544443222 222322 6677777544 3445689999976422
Q ss_pred ccc--------------------cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 290 IDW--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 290 l~~--------------------~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
.+. ......+++++.++|+|||.+++..+... ..+.+.++++++||++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--------~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--------GEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--------CHHHHHHHHHHCCCeeeeee
Confidence 210 01134589999999999999998765432 12467889999999876544
No 87
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.01 E-value=5.6e-09 Score=99.76 Aligned_cols=130 Identities=22% Similarity=0.286 Sum_probs=79.1
Q ss_pred CCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCceEEEecccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~ 291 (452)
..+|||||||+|.++..|++. .++++|+++.++..+..... ..+. ++.+...| ++..+++||+|++... ++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~-l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAP-EAGLAGNITFEVGD---LESLLGRFDTVVCLDV-LI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCccCcEEEEcC---chhccCCcCEEEEcch-hh
Confidence 458999999999999999864 35556555554444332222 1222 46677776 3444678999998874 54
Q ss_pred ccc--cHHHHHHHHHHhcCCCcEEEEEeCCCC------------CCC--hh--hHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 292 WLQ--RDGILLLELDRLLRPGGYFVYSSPEAY------------AHD--PE--NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 292 ~~~--d~~~~L~ei~RvLkPGG~lvi~~p~~~------------~~~--~~--~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
|.+ +...+++++.+++++++.+.+ .+... ... .. ....-.++.+++++.||++...+..
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 433 335688888888765554433 22100 000 00 0001246888999999998877654
No 88
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=3.3e-09 Score=100.46 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=66.8
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCceEEEecc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
+..+|||||||+|.++..+++ ..|+++|+++..+..+. +.....+. ++.+..+|.........+||+|++..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~-~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA-QNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA 150 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence 345899999999999988875 25677777766554443 22223343 36788888766544457899999876
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
. .++ +..++.++|+|||++++..
T Consensus 151 ~-~~~------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 A-AST------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred C-cch------hhHHHHHhcCcCcEEEEEE
Confidence 3 443 3457889999999999854
No 89
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.98 E-value=3.8e-09 Score=108.46 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=76.9
Q ss_pred CEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEEecCCCC--CCCCCCceEEEecccc
Q 012961 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL--PYPSRSFELAHCSRCR 289 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg-~~~~~~~~d~~~l--p~~d~sFDlVv~s~~~ 289 (452)
..+||||||+|.++..++. ..++|+|++..++..+..+.. +.+ .++.++.+|+..+ .++++++|.|++.+ .
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~-~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-P 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE-LLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-P 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH-HcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-C
Confidence 4799999999999999996 368888888877766654443 344 4678888887654 47789999999776 3
Q ss_pred ccccccH------HHHHHHHHHhcCCCcEEEEEe
Q 012961 290 IDWLQRD------GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 290 l~~~~d~------~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.+|.... ..++.++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 5564332 469999999999999999965
No 90
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.97 E-value=7.5e-09 Score=97.37 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=82.3
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEEecCCCC-CCCCCCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg--~~~~~~~~d~~~l-p~~d~sFDlVv~s 286 (452)
+..+|||+|||+|.++..++. ..|+++|+++.++..+. +.++..+ .++.+...|..+. +...+.||+|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~-~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR-RNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 345899999999999987754 25778887776665443 2333334 3567777777553 3333689999974
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEE
Q 012961 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (452)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 346 (452)
. ...+...+++++.++|+|||++++.... .....++...+++.||...
T Consensus 119 ~----~~~~~~~~l~~~~~~LkpgG~lv~~~~~--------~~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 119 G----GSEKLKEIISASWEIIKKGGRIVIDAIL--------LETVNNALSALENIGFNLE 166 (198)
T ss_pred C----CcccHHHHHHHHHHHcCCCcEEEEEeec--------HHHHHHHHHHHHHcCCCeE
Confidence 3 1345577999999999999999985432 1234677888899999543
No 91
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=4.2e-09 Score=100.30 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEE
Q 012961 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLG 266 (452)
Q Consensus 193 ~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~-~~~~~ 266 (452)
......+.+.+.. .+..+|||||||+|+++..+++. .|+++|+++..+..+.... ++.+. ++.+.
T Consensus 62 p~~~~~~~~~l~~--------~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l-~~~g~~~v~~~ 132 (212)
T PRK13942 62 IHMVAIMCELLDL--------KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL-KKLGYDNVEVI 132 (212)
T ss_pred HHHHHHHHHHcCC--------CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCeEEE
Confidence 3444445555542 23458999999999999888752 5677777766554444222 22333 57888
Q ss_pred EecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 267 VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 267 ~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.+|......+.+.||+|++..+ .+. +...+.+.|||||.+++..
T Consensus 133 ~gd~~~~~~~~~~fD~I~~~~~-~~~------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 133 VGDGTLGYEENAPYDRIYVTAA-GPD------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ECCcccCCCcCCCcCEEEECCC-ccc------chHHHHHhhCCCcEEEEEE
Confidence 8887766556678999997663 332 3456778999999999854
No 92
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.97 E-value=8.4e-09 Score=96.87 Aligned_cols=149 Identities=19% Similarity=0.284 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHH----HHHHHcCCC-e-EE
Q 012961 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI----QFALERGIP-S-TL 265 (452)
Q Consensus 192 ~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~----~~A~~rg~~-~-~~ 265 (452)
.+...+.+.+.++. ...+|||||||||..+.+++.+ ...+...+.|...... ....+.+.+ + .-
T Consensus 11 k~pIl~vL~~~l~~---------~~~~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P 80 (204)
T PF06080_consen 11 KDPILEVLKQYLPD---------SGTRVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP 80 (204)
T ss_pred HhHHHHHHHHHhCc---------cCceEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC
Confidence 34455555565542 1226999999999999999874 2234444444444432 222333322 1 11
Q ss_pred EEecCCC--CCC------CCCCceEEEeccccccccccH--HHHHHHHHHhcCCCcEEEEEeCCCCCC--Ch--------
Q 012961 266 GVLGTKR--LPY------PSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH--DP-------- 325 (452)
Q Consensus 266 ~~~d~~~--lp~------~d~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvi~~p~~~~~--~~-------- 325 (452)
...|+.. .+. ..++||+|+|.+ ++|..+-. +.+++.+.++|++||.|++..|..+.. ..
T Consensus 81 ~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~ 159 (204)
T PF06080_consen 81 LALDVSAPPWPWELPAPLSPESFDAIFCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDA 159 (204)
T ss_pred eEeecCCCCCccccccccCCCCcceeeehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHH
Confidence 2233322 232 245899999999 68876543 669999999999999999998865431 11
Q ss_pred --------hhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 326 --------ENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 326 --------~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
-..+..+++..++++.|++.++....
T Consensus 160 sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~M 193 (204)
T PF06080_consen 160 SLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDM 193 (204)
T ss_pred HHhcCCCCcCccCHHHHHHHHHHCCCccCccccc
Confidence 12233468999999999988766554
No 93
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.95 E-value=3.4e-09 Score=102.44 Aligned_cols=126 Identities=20% Similarity=0.240 Sum_probs=87.9
Q ss_pred CCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEecCCCCC--CCCCCceEEEeccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~r-g~~~~~~~~d~~~lp--~~d~sFDlVv~s~~ 288 (452)
..+|||+|||+|.++..++++ .|+++++.+.+...++...+... ..++.++..|..++. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 568999999999999999975 46666665555544443333322 235788888877764 33347999999631
Q ss_pred cc---------------cc--cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 289 RI---------------DW--LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 289 ~l---------------~~--~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
.+ +| ..+.+.+++...++|||||++.++.++. ...++.+++++.+|...+...
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------rl~ei~~~l~~~~~~~k~i~~ 194 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------RLAEIIELLKSYNLEPKRIQF 194 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------HHHHHHHHHHhcCCCceEEEE
Confidence 10 01 1234668999999999999999988653 256788999999998766554
No 94
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.93 E-value=8.6e-09 Score=98.20 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=67.2
Q ss_pred CCCEEEEECCCCchHHHHHhhC--C---CccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEeccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--D---IIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~---v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s~~ 288 (452)
+..+|||||||+|.++..|++. . |+++|+++..+..+. +.+.+.+. ++.+...|.........+||+|++..+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 3458999999999999988863 2 778877776654444 33333343 578888887655434468999997653
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.. .+...+.+.|+|||++++..
T Consensus 156 -~~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 -GP------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred -cc------cccHHHHHhcCcCcEEEEEE
Confidence 22 24567889999999999854
No 95
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.93 E-value=1e-08 Score=93.51 Aligned_cols=123 Identities=21% Similarity=0.285 Sum_probs=86.1
Q ss_pred CEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCC--eEEEEecCCCCCCCCCCceEEEeccc--
Q 012961 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC-- 288 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~--~~~~~~d~~~lp~~d~sFDlVv~s~~-- 288 (452)
.+|||+|||.|.+...|++. ..+|+|.++..+.-++ ++|+..+.+ +.|.+.|+..-.+..+.||+|+--..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 38999999999999999974 3556666655544432 455555554 88999997766666788888875321
Q ss_pred cccccc-----cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 289 RIDWLQ-----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 289 ~l~~~~-----d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
++...+ .+..++..+.++|+|||+|+|+.-+.- .+++.+.++..||+....-
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T---------~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT---------KDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc---------HHHHHHHHhcCCeEEEEee
Confidence 111111 224489999999999999999764321 4688888999898776544
No 96
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.92 E-value=9.5e-09 Score=98.37 Aligned_cols=131 Identities=15% Similarity=0.077 Sum_probs=79.9
Q ss_pred CEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHH------------HcCCCeEEEEecCCCCCCC-CCCce
Q 012961 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFE 281 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~------------~rg~~~~~~~~d~~~lp~~-d~sFD 281 (452)
.+|||+|||.|..+.+|+++ .|+++|+++..+...+.+... ....++.+.++|+..++.. ...||
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd 118 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVD 118 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCee
Confidence 48999999999999999985 566776666555433211100 0123467788888877533 25799
Q ss_pred EEEecccccccccc--HHHHHHHHHHhcCCCcEEEEEe---CCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 282 LAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS---PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 282 lVv~s~~~l~~~~d--~~~~L~ei~RvLkPGG~lvi~~---p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
+|+-..+ +++++. ...++..+.++|+|||.+++.+ ++.-...+...-.-+++.+++. -+|++...+
T Consensus 119 ~v~D~~~-~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~~~ 189 (218)
T PRK13255 119 AVYDRAA-LIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIELLE 189 (218)
T ss_pred EEEehHh-HhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEEee
Confidence 9997664 444432 2569999999999999755422 1111011111112256666664 337666544
No 97
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.92 E-value=4e-08 Score=101.74 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=83.8
Q ss_pred CEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCC-CCCceEEEecccccc
Q 012961 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~-d~sFDlVv~s~~~l~ 291 (452)
.+|||+|||+|.++..++. ..++++|+++.++..+. +.++..+.++.+..+|.....++ .++||+|+|+.-.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar-eNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR-KNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 3799999999999988874 25777877776665554 33334456788888887544332 357999998542111
Q ss_pred cc--------------------cc----HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEE
Q 012961 292 WL--------------------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (452)
Q Consensus 292 ~~--------------------~d----~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 347 (452)
-. .+ ...++.++.+.|+|||.+++.... ..-+.+.+++++.||..++
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------~Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------DQGAAVRGVLAENGFSGVE 402 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---------cHHHHHHHHHHHCCCcEEE
Confidence 00 01 134677778899999999885522 1235788899999998766
Q ss_pred EEec
Q 012961 348 KKDQ 351 (452)
Q Consensus 348 ~~~~ 351 (452)
...+
T Consensus 403 v~kD 406 (423)
T PRK14966 403 TLPD 406 (423)
T ss_pred EEEc
Confidence 5443
No 98
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.90 E-value=1.3e-09 Score=103.46 Aligned_cols=114 Identities=19% Similarity=0.309 Sum_probs=76.0
Q ss_pred CEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEE-----EecCCCCCC--CCCCceEEEecc
Q 012961 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLG-----VLGTKRLPY--PSRSFELAHCSR 287 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~-----~~d~~~lp~--~d~sFDlVv~s~ 287 (452)
+.++|+|||+|..+..+++. +|+++| ++++|++.|.+.. ++... ..+.+..++ .+++.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD-----~s~~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATD-----VSEAMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeec-----CCHHHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 47999999999777777763 677774 5666677776653 32221 122222333 379999999999
Q ss_pred ccccccccHHHHHHHHHHhcCCCc-EEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCE
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG-~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~ 344 (452)
| +||.. .+.++++++|+||+.| .+++ |.+.. +.-.|.++..++.+.+++
T Consensus 109 a-~HWFd-le~fy~~~~rvLRk~Gg~iav-----W~Y~d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 A-VHWFD-LERFYKEAYRVLRKDGGLIAV-----WNYND-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred h-HHhhc-hHHHHHHHHHHcCCCCCEEEE-----EEccC-CCcCCHHHHHHHHHHhhc
Confidence 5 88864 4779999999999877 5444 11111 333467777777777665
No 99
>PLN03075 nicotianamine synthase; Provisional
Probab=98.90 E-value=6.5e-09 Score=103.20 Aligned_cols=102 Identities=10% Similarity=0.139 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCchHHHH-Hhh-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAY-LLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~-La~-----~~v~~vdis~~dis~~~~~~A~~rg--~~~~~~~~d~~~lp~~d~sFDlVv~s 286 (452)
.+++|+|||||.|.++.. ++. ..++++|+++..++.+........+ ..+.|..+|+.+++...+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 456899999998855444 332 2466777766655544422222222 35889999987764334689999988
Q ss_pred ccccccc-ccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 287 RCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 287 ~~~l~~~-~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
++++|. ++...+++.+.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 555553 677889999999999999999976
No 100
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.84 E-value=9.6e-08 Score=93.90 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
+..+|||+|||+|.++..++.. .++++|+++..+..+..........++.+...|... ++++++||+|+++.-.+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 3458999999999999998863 456666655554433322221112357778777643 23357899999852111
Q ss_pred c-------------c------------cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEE
Q 012961 291 D-------------W------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (452)
Q Consensus 291 ~-------------~------------~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 345 (452)
. + ......++.++.++|+|||++++.... ..-+.+.+++++.||..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---------~~~~~~~~~l~~~gf~~ 257 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---------DQGEAVRALLAAAGFAD 257 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------hHHHHHHHHHHhCCCce
Confidence 0 0 011245788899999999999985421 11246788888999975
Q ss_pred EEE
Q 012961 346 VSK 348 (452)
Q Consensus 346 v~~ 348 (452)
+..
T Consensus 258 v~~ 260 (275)
T PRK09328 258 VET 260 (275)
T ss_pred eEE
Confidence 554
No 101
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.84 E-value=2.6e-09 Score=91.05 Aligned_cols=97 Identities=27% Similarity=0.427 Sum_probs=67.5
Q ss_pred CEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHc----C--CCeEEEEecCCCCC--CCCCCceEEEe
Q 012961 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLP--YPSRSFELAHC 285 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~r----g--~~~~~~~~d~~~lp--~~d~sFDlVv~ 285 (452)
.+|||+|||+|.++..+++. .++++|+++ ..++.++.+ + .++.+.+.|...+. +++++||+|++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~-----~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDP-----EAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSH-----HHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECH-----HHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 37999999999999988864 445555544 444444432 2 35889999987765 77899999998
Q ss_pred ccccccccc-------cHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 286 SRCRIDWLQ-------RDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 286 s~~~l~~~~-------d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+--...... ....+++++.++|||||.+++..|
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 653222111 125689999999999999998764
No 102
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.84 E-value=1.4e-08 Score=82.05 Aligned_cols=93 Identities=25% Similarity=0.409 Sum_probs=67.4
Q ss_pred EEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHH-----HcCCCeEEEEecCCCCCC-CCCCceEEEeccc
Q 012961 218 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFAL-----ERGIPSTLGVLGTKRLPY-PSRSFELAHCSRC 288 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~-----~rg~~~~~~~~d~~~lp~-~d~sFDlVv~s~~ 288 (452)
+|||+|||.|.++..++. ..++++|+++ .+++.++ ....+..+...|...... ..++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~- 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISP-----VALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDP- 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCH-----HHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcc-
Confidence 489999999999998886 2445555544 4444433 112346777777666553 457899999887
Q ss_pred cccc-cccHHHHHHHHHHhcCCCcEEEEE
Q 012961 289 RIDW-LQRDGILLLELDRLLRPGGYFVYS 316 (452)
Q Consensus 289 ~l~~-~~d~~~~L~ei~RvLkPGG~lvi~ 316 (452)
.+++ ......+++.+.+.|+|||.++++
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4665 666788999999999999999985
No 103
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.84 E-value=2.1e-08 Score=100.59 Aligned_cols=103 Identities=16% Similarity=0.238 Sum_probs=65.4
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEecCCC-CCCCCCC---ceEEEe
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPYPSRS---FELAHC 285 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~r-g~~~~~~~~d~~~-lp~~d~s---FDlVv~ 285 (452)
..+|||+|||+|..+..|+++ .++++|+++.++..++.+..... +.++..+++|..+ ++++... .++++.
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 347999999999999988764 35566655555544443322211 2445667888765 4444332 233333
Q ss_pred cccccccccc--HHHHHHHHHHhcCCCcEEEEEeC
Q 012961 286 SRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 286 s~~~l~~~~d--~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
....+++... ...+|++++++|+|||.|+|...
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 3334555443 35699999999999999998653
No 104
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.82 E-value=1.9e-08 Score=94.32 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=72.8
Q ss_pred CCEEEEECCCCchHHHHHhh-CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~-~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
...|-|+|||.+.++..+.. ..|...|+... +-.+..+|...+|+++++.|++++..+++ ..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSLM--GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSLM--GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhhh--CC
Confidence 45899999999999987764 24666666442 12367789999999999999999876433 36
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
+...++.|+.|+|||||.|.|....... ...+.+.+.+++.||++.....
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf------~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRF------ENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-------S-HHHHHHHHHCTTEEEEEEE-
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccC------cCHHHHHHHHHHCCCeEEeccc
Confidence 7788999999999999999997643221 1246788889999999887543
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.82 E-value=1.2e-07 Score=88.97 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=66.4
Q ss_pred CCCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEEecCCC-CCCCCCCceEEEeccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKR-LPYPSRSFELAHCSRC 288 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg-~~~~~~~~d~~~-lp~~d~sFDlVv~s~~ 288 (452)
+..+|||+|||+|.++..++. ..|+++|+++..+..++.+.. +.+ .++.+...|+.. ++.....+|.|+...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~-~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD-RFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 345899999999999988864 357788877766655443332 333 356777777643 222223467765321
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
..+...+++++.++|+|||++++..+
T Consensus 118 ----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 118 ----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 23446799999999999999999764
No 106
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.82 E-value=5.3e-08 Score=96.87 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=81.0
Q ss_pred CCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
..+|||+|||+|.++..++.. .++++|+++..+..+.. .++..+. ++.+..+|... ++++++||+|+++--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~-n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 358999999999999999863 56777776666544442 3333343 47788888643 2345689999985200
Q ss_pred ------------ccccc------------cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEE
Q 012961 290 ------------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (452)
Q Consensus 290 ------------l~~~~------------d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 345 (452)
+++.+ ....++.++.++|+|||++++..... ++.+.+++.+.||.-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~----------~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS----------MEALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHHhCCCce
Confidence 01100 12457899999999999999865321 356788888888866
Q ss_pred EEEE
Q 012961 346 VSKK 349 (452)
Q Consensus 346 v~~~ 349 (452)
....
T Consensus 270 ~~~~ 273 (284)
T TIGR03533 270 LEFE 273 (284)
T ss_pred eeec
Confidence 5443
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.78 E-value=6.4e-08 Score=91.87 Aligned_cols=96 Identities=15% Similarity=0.077 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEecccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~ 291 (452)
+..+|||||||+|.++..|+.. .++++|+++..+..+.....+ .+. ++.+...|......+.++||+|++..+ .+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~~ 155 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-AP 155 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCcCCCcCEEEEccC-ch
Confidence 3458999999999998877653 566777665554443322222 233 477777776443223478999998763 33
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+ +..++.+.|+|||.+++...
T Consensus 156 ~------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 156 E------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred h------hhHHHHHhcCCCcEEEEEEc
Confidence 2 35678899999999998653
No 108
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.76 E-value=1.6e-08 Score=93.99 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=106.2
Q ss_pred cCceeecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHH
Q 012961 175 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQ 254 (452)
Q Consensus 175 ~g~~~~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~ 254 (452)
..+...|.|.|.+|-...+++.+.+.--- -.++..+.++||+|+|.|.++..++.. .-++...++|..|+.
T Consensus 78 ~TdING~lgrGsMFifSe~QF~klL~i~~------p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~ 148 (288)
T KOG3987|consen 78 QTDINGFLGRGSMFIFSEEQFRKLLVIGG------PAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRD 148 (288)
T ss_pred hhccccccccCceEEecHHHHHHHHhcCC------CccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHH
Confidence 44566788889999888877776554111 123445679999999999999999864 234555567777777
Q ss_pred HHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCC-CcEEEEEe--CC---------CCC
Q 012961 255 FALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFVYSS--PE---------AYA 322 (452)
Q Consensus 255 ~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkP-GG~lvi~~--p~---------~~~ 322 (452)
..++++-++. ...+..-.+-+||+|.|.+ ++.-..++..+|+.+..+|+| +|.++++. |- ...
T Consensus 149 rL~kk~ynVl----~~~ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~ 223 (288)
T KOG3987|consen 149 RLKKKNYNVL----TEIEWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLP 223 (288)
T ss_pred HHhhcCCcee----eehhhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCc
Confidence 7776665432 2222222234699999988 677778889999999999999 89888653 21 000
Q ss_pred CChh-----hHHHH----HHHHHHHHhCCCEEEEE
Q 012961 323 HDPE-----NRRIW----NAMYDLLKSMCWKIVSK 348 (452)
Q Consensus 323 ~~~~-----~~~~~----~~l~~ll~~~Gf~~v~~ 348 (452)
..++ ..+.| ..+-++++++||.+..+
T Consensus 224 ~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 224 LRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred CCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhh
Confidence 1111 11234 35667899999976543
No 109
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.72 E-value=1.3e-07 Score=94.04 Aligned_cols=122 Identities=15% Similarity=0.242 Sum_probs=79.3
Q ss_pred CEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCceEEEeccc--
Q 012961 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~d~sFDlVv~s~~-- 288 (452)
.+|||+|||+|.++..++.. .++++|+++..+..+.. .++..+. ++.+..+|... ++++++||+|+++.-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~-n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE-NAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 48999999999999999862 56677666655544432 2233343 37788888654 344458999998510
Q ss_pred ----------cccccc------------cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCCEE
Q 012961 289 ----------RIDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKI 345 (452)
Q Consensus 289 ----------~l~~~~------------d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~-~~Gf~~ 345 (452)
+..|.+ ....++.++.+.|+|||++++..... .-..+.+++. +.||..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---------q~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---------QQKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---------HHHHHHHHHHhcCCCce
Confidence 111211 23458899999999999999865321 1235667777 468866
Q ss_pred EEEE
Q 012961 346 VSKK 349 (452)
Q Consensus 346 v~~~ 349 (452)
+...
T Consensus 265 ~~~~ 268 (284)
T TIGR00536 265 VENG 268 (284)
T ss_pred eEEe
Confidence 5543
No 110
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=1.3e-08 Score=95.80 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=95.0
Q ss_pred CEEEEECCCCchHHHHHhhCC---CccccCChhhhhHHHHHHHHHc---CCCeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 217 RNVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~~~~~~A~~r---g~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
..++|||||.|.+...|.... ++-+|.+ ..|++.++.. ++.....+.|-+.|+|.+++||+|+++. .+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS-----~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-sl 147 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTS-----YDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SL 147 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecc-----hHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hh
Confidence 479999999999999998753 4445544 4455555443 4456778899999999999999999988 69
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCC--------CCh------------hhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--------HDP------------ENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~--------~~~------------~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
||+.+....+..+...|||+|.|+-+...... ... .......++-.++.++||.......
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDt 227 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDT 227 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecc
Confidence 99999999999999999999999854322100 000 0011225788899999999876654
Q ss_pred c
Q 012961 351 Q 351 (452)
Q Consensus 351 ~ 351 (452)
+
T Consensus 228 D 228 (325)
T KOG2940|consen 228 D 228 (325)
T ss_pred c
Confidence 4
No 111
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.72 E-value=2.5e-08 Score=95.52 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
....|-|+|||.+.++..- ...|..+|+.+. +-.+..+|..++|++|++.|++|+..+ -+..
T Consensus 180 ~~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS--LMgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS--LMGT 241 (325)
T ss_pred CceEEEecccchhhhhhcc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh--hhcc
Confidence 3457999999999877622 135677766432 335678899999999999999987543 2357
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
+...++.|++|+|++||.|+|........ ....+.+.+..+||.+.....
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SRf~------dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSRFS------DVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhhcc------cHHHHHHHHHHcCCeeeehhh
Confidence 88889999999999999999976433211 123578889999998876554
No 112
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.71 E-value=7.1e-08 Score=89.90 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=63.9
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCce
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 281 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp--------~~d~sFD 281 (452)
++.+|||||||+|.++..++.. .|+++|+++.. ...++.+...|..+.+ +++++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 3458999999999998888652 37777776632 1234667777765542 4567899
Q ss_pred EEEecccc-------cccc---ccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 282 LAHCSRCR-------IDWL---QRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 282 lVv~s~~~-------l~~~---~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
+|++..+. +++. .....++.++.++|+|||++++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99975421 1111 123568999999999999999965
No 113
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.69 E-value=1.8e-07 Score=94.18 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=79.2
Q ss_pred CEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCceEEEecccc-
Q 012961 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR- 289 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~d~sFDlVv~s~~~- 289 (452)
.+|||+|||+|.++..++.. .|+++|+++..+..+.. .++..+. ++.+..+|... ++++++||+|+++--.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~-n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 47999999999999999863 56777776666654442 3333343 47788888643 2345689999986210
Q ss_pred -----------ccccc------------cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEE
Q 012961 290 -----------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (452)
Q Consensus 290 -----------l~~~~------------d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 346 (452)
+++.+ ....+++++.++|+|||++++..... ...+.+++.+.+|.-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----------~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----------RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHhhCCCEEE
Confidence 01111 12457899999999999999864321 2357777777777554
Q ss_pred EEE
Q 012961 347 SKK 349 (452)
Q Consensus 347 ~~~ 349 (452)
...
T Consensus 283 ~~~ 285 (307)
T PRK11805 283 EFE 285 (307)
T ss_pred Eec
Confidence 433
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.68 E-value=6e-07 Score=87.81 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=76.7
Q ss_pred CEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCC-CC-CCCCceEEEeccccc
Q 012961 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PY-PSRSFELAHCSRCRI 290 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~l-p~-~d~sFDlVv~s~~~l 290 (452)
.+|||+|||+|.++..++.. .++++|+++..+..++.+ +...+ ..+...|..+. +- ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 47999999999999998752 466776666655444322 22223 46777776442 21 125799999863111
Q ss_pred c-------------cc--------cc----HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEE
Q 012961 291 D-------------WL--------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (452)
Q Consensus 291 ~-------------~~--------~d----~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 345 (452)
. +. .+ ...++..+.++|+|||.+++..... ..+++..++++.||+.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---------~~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---------QAPLAVEAFARAGLIA 235 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------hHHHHHHHHHHCCCCc
Confidence 0 00 01 1357778889999999999875321 1356888888899875
Q ss_pred EEE
Q 012961 346 VSK 348 (452)
Q Consensus 346 v~~ 348 (452)
...
T Consensus 236 ~~~ 238 (251)
T TIGR03704 236 RVA 238 (251)
T ss_pred eee
Confidence 443
No 115
>PRK00811 spermidine synthase; Provisional
Probab=98.68 E-value=2.1e-07 Score=92.63 Aligned_cols=105 Identities=17% Similarity=0.110 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHH-----cCCCeEEEEecCCCC-CCCCCCceEEE
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRL-PYPSRSFELAH 284 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~-----rg~~~~~~~~d~~~l-p~~d~sFDlVv 284 (452)
++++|||||||.|.++..++++ .|+++|+++..+..+...+..- ...++.++..|+... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4568999999999999998864 3566666655544333222110 134578888886543 33457899999
Q ss_pred ecccccccccc----HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012961 285 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 285 ~s~~~l~~~~d----~~~~L~ei~RvLkPGG~lvi~~p~~ 320 (452)
+.. .-++.+. ...+++.+.+.|+|||.+++.....
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 753 2233221 1568899999999999999865433
No 116
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=8.6e-08 Score=91.27 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=82.0
Q ss_pred CEEEEECCCCchHHHHHhhC-CCccccCChhhhhHHHHHHHHHcC----CCeEEEEec--CCC--CCCCCCCceEEEecc
Q 012961 217 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLG--TKR--LPYPSRSFELAHCSR 287 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~-~v~~vdis~~dis~~~~~~A~~rg----~~~~~~~~d--~~~--lp~~d~sFDlVv~s~ 287 (452)
.+||+||||.|.....+++. .-..+.+...|.++.+++..+++. .++...+.| ... -+...+++|+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 37999999999988888762 111123333344444555555441 122223333 222 245678999999988
Q ss_pred cccccccc-HHHHHHHHHHhcCCCcEEEEEeCCCCCCCh-----------------hhH--HH--HHHHHHHHHhCCCEE
Q 012961 288 CRIDWLQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDP-----------------ENR--RI--WNAMYDLLKSMCWKI 345 (452)
Q Consensus 288 ~~l~~~~d-~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~-----------------~~~--~~--~~~l~~ll~~~Gf~~ 345 (452)
++....++ ...++.+++++|||||.+++.+-..+.... ++. .. -+++..++.++||..
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~ 232 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEE 232 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccch
Confidence 54444333 366999999999999999998744332100 111 11 168889999999987
Q ss_pred EEEE
Q 012961 346 VSKK 349 (452)
Q Consensus 346 v~~~ 349 (452)
+...
T Consensus 233 ~~~~ 236 (264)
T KOG2361|consen 233 VQLE 236 (264)
T ss_pred hccc
Confidence 6543
No 117
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.66 E-value=1.1e-07 Score=89.88 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHc-----CCCeEEEEecCCCCCCCCCCceEEEeccc
Q 012961 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~r-----g~~~~~~~~d~~~lp~~d~sFDlVv~s~~ 288 (452)
....++||.|+|.|.++..|+-.....||+. +..+..++.|++. ..-..+....++++..+.++||+|++..|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3456899999999999998875433344443 2334445555532 22256777778887655679999999997
Q ss_pred cccccc-cHHHHHHHHHHhcCCCcEEEEEeCCC---C-CCChhh---HHHHHHHHHHHHhCCCEEEEEEece
Q 012961 289 RIDWLQ-RDGILLLELDRLLRPGGYFVYSSPEA---Y-AHDPEN---RRIWNAMYDLLKSMCWKIVSKKDQT 352 (452)
Q Consensus 289 ~l~~~~-d~~~~L~ei~RvLkPGG~lvi~~p~~---~-~~~~~~---~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (452)
+.|... +.-.+|+++...|+|+|.+++-..-. . ..++++ .+.-+.+.++++++|++++..+.+.
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 555432 23569999999999999999854311 1 112221 2345789999999999999887654
No 118
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.64 E-value=2.4e-07 Score=88.90 Aligned_cols=102 Identities=16% Similarity=0.039 Sum_probs=72.4
Q ss_pred CCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHH------------HHHcCCCeEEEEecCCCCCCC---CC
Q 012961 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQF------------ALERGIPSTLGVLGTKRLPYP---SR 278 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~------------A~~rg~~~~~~~~d~~~lp~~---d~ 278 (452)
..+||+.|||.|.-+.+|++. .|+|+|+++..+.....+. ...++..+.+.++|+..++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 358999999999999999985 5667766665554432110 011355789999999888642 25
Q ss_pred CceEEEeccccccccccH-HHHHHHHHHhcCCCcEEEEEe
Q 012961 279 SFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 279 sFDlVv~s~~~l~~~~d~-~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.||+|+-..++.+..++. ..+.+.+.++|+|||.+++..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 799998655444443333 569999999999999988765
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.64 E-value=1e-06 Score=81.42 Aligned_cols=122 Identities=14% Similarity=0.008 Sum_probs=83.9
Q ss_pred CCCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
+..+++|||||+|+++..++. .+++++|-.+..+.....+.++-...++.+..+++.+.--...+||.|+....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg-- 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG-- 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--
Confidence 445899999999999999883 36888887766654444333333345677888876443111127999996653
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCC-EEEEEE
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW-KIVSKK 349 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf-~~v~~~ 349 (452)
...+.+|+.+...|||||++++... ..+......+.+++.|| ++++..
T Consensus 112 ---~~i~~ile~~~~~l~~ggrlV~nai--------tlE~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 112 ---GNIEEILEAAWERLKPGGRLVANAI--------TLETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred ---CCHHHHHHHHHHHcCcCCeEEEEee--------cHHHHHHHHHHHHHcCCceEEEEE
Confidence 4457899999999999999998542 22334456677888999 555433
No 120
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=4.9e-07 Score=95.01 Aligned_cols=126 Identities=21% Similarity=0.317 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC--CCCCCceEEEe---
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC--- 285 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp--~~d~sFDlVv~--- 285 (452)
++.+|||+|||+|..+..+++. .|+++|+++..+.... +.+...+..+.+...|...++ ++.++||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3458999999999999988863 4667777666654443 333444666778888887654 34578999994
Q ss_pred -ccc-cc------ccccc----------HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCEEE
Q 012961 286 -SRC-RI------DWLQR----------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIV 346 (452)
Q Consensus 286 -s~~-~l------~~~~d----------~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~-Gf~~v 346 (452)
+.. ++ .|... ...+|.++.++|||||++++++-.......+ +.+...+++. +|+++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene-----~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENE-----QQIKAFLARHPDAELL 397 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCH-----HHHHHHHHhCCCCEEe
Confidence 321 11 12111 1358999999999999999987544322211 3455555543 56544
No 121
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.62 E-value=2.9e-07 Score=98.68 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=80.2
Q ss_pred CCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
..+|||+|||+|.++..++. ..++++|+++..+..+..+ +...+. ++.+..+|... ++++++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N-~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSN-AIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHH-HHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 35899999999999998875 3577777776665544432 233333 46677777533 2345689999984211
Q ss_pred c-------------cccc------------cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCE
Q 012961 290 I-------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (452)
Q Consensus 290 l-------------~~~~------------d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~ 344 (452)
+ .|-+ ....++.++.++|+|||.+++.... ..-+.+.+++.+.||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---------~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---------KQEEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---------chHHHHHHHHHhcCCC
Confidence 1 1100 1133678889999999999985421 1235678888889998
Q ss_pred EEEEEe
Q 012961 345 IVSKKD 350 (452)
Q Consensus 345 ~v~~~~ 350 (452)
.+....
T Consensus 288 ~~~~~~ 293 (506)
T PRK01544 288 IESVYK 293 (506)
T ss_pred ceEEEe
Confidence 665443
No 122
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=4.2e-07 Score=95.74 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCC----CCCCCceEEE
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP----YPSRSFELAH 284 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp----~~d~sFDlVv 284 (452)
++.+|||+|||+|..+..+++. .|+++|++...+.... +.++..|. ++.+...|+..++ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3458999999999999888752 4777777776665444 33333454 4778888887765 4457899999
Q ss_pred ec----c-cccccccc----------------HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhC-C
Q 012961 285 CS----R-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-C 342 (452)
Q Consensus 285 ~s----~-~~l~~~~d----------------~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~-G 342 (452)
+. . .++...++ ...+|.++.++|||||++++++-..+.. + .-..+..++++. +
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~--E---ne~~v~~~l~~~~~ 405 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA--E---NEAQIEQFLARHPD 405 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh--h---HHHHHHHHHHhCCC
Confidence 52 1 12322222 2458999999999999999887443311 1 123455666655 5
Q ss_pred CEE
Q 012961 343 WKI 345 (452)
Q Consensus 343 f~~ 345 (452)
|++
T Consensus 406 ~~~ 408 (434)
T PRK14901 406 WKL 408 (434)
T ss_pred cEe
Confidence 654
No 123
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.62 E-value=2e-07 Score=87.76 Aligned_cols=121 Identities=17% Similarity=0.261 Sum_probs=83.3
Q ss_pred EEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC-CC--CCCCCceEEEeccccc
Q 012961 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP--YPSRSFELAHCSRCRI 290 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~-lp--~~d~sFDlVv~s~~~l 290 (452)
.+||||||.|.+...++. ..++|+|+...-+..+..+..+....++.+..+|+.. +. ++++++|.|+..+ --
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CC
Confidence 799999999999999986 4688999888777776655555545578888888766 22 4568999999765 34
Q ss_pred cccccH--------HHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHh--CCCEEEE
Q 012961 291 DWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS--MCWKIVS 347 (452)
Q Consensus 291 ~~~~d~--------~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~--~Gf~~v~ 347 (452)
+|.... ..++..+.++|+|||.+.+.+ +....++.+.+.++. .+|+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T--------D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT--------DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE--------S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe--------CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 443211 459999999999999999866 122345667777776 4777654
No 124
>PHA03411 putative methyltransferase; Provisional
Probab=98.61 E-value=2.1e-07 Score=91.42 Aligned_cols=124 Identities=10% Similarity=0.022 Sum_probs=81.0
Q ss_pred CEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccccc-
Q 012961 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR- 295 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d- 295 (452)
.+|||+|||+|.++..++.+. .+..+.+.|+++.+++.++++..++.+...|+..+.. +++||+|+++....+....
T Consensus 66 grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCchh
Confidence 479999999999988886531 1123444455556667777665568888899877653 4689999986533321110
Q ss_pred ------------------HHHHHHHHHHhcCCCcEEEEEe--CCCCCCChhhHHHHHHHHHHHHhCCCEEE
Q 012961 296 ------------------DGILLLELDRLLRPGGYFVYSS--PEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (452)
Q Consensus 296 ------------------~~~~L~ei~RvLkPGG~lvi~~--p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 346 (452)
...++..+.++|+|+|.+.+.- -+.|...- .-++...++++.||...
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl----~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTM----KSNKYLKWSKQTGLVTY 210 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccC----CHHHHHHHHHhcCcEec
Confidence 1356778889999999776642 22221110 12578899999999654
No 125
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.61 E-value=2.2e-07 Score=94.25 Aligned_cols=141 Identities=21% Similarity=0.378 Sum_probs=88.9
Q ss_pred CCCEEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHHHc----------CCCeEEEEecCCC------CCC
Q 012961 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKR------LPY 275 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~~r----------g~~~~~~~~d~~~------lp~ 275 (452)
+..+|||||||-|.-..-... ..++|+|++...+.++..+...-+ ...+.++..|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 556899999998875555544 356788888877776655442111 1235667776432 222
Q ss_pred CCCCceEEEecccccccc-ccH---HHHHHHHHHhcCCCcEEEEEeCCCCC---------------------------CC
Q 012961 276 PSRSFELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFVYSSPEAYA---------------------------HD 324 (452)
Q Consensus 276 ~d~sFDlVv~s~~~l~~~-~d~---~~~L~ei~RvLkPGG~lvi~~p~~~~---------------------------~~ 324 (452)
....||+|-|.+ .+||. ... ..+|..+...|+|||+|+.+.|.... ..
T Consensus 142 ~~~~FDvVScQF-alHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 142 RSRKFDVVSCQF-ALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred cCCCcceeehHH-HHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 235899999998 47774 332 45999999999999999987752100 00
Q ss_pred ---------------------hhhHHHHHHHHHHHHhCCCEEEEEEeceeEee
Q 012961 325 ---------------------PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWA 356 (452)
Q Consensus 325 ---------------------~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~ 356 (452)
++-.-.|+.+.+++++.|++++.......++.
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~ 273 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYE 273 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHHHHH
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHHHHH
Confidence 11223578999999999999998776554443
No 126
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.58 E-value=6.8e-07 Score=93.95 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCCCeEE--EEecCCCCCC--CCCCceEEEe-
Q 012961 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLPY--PSRSFELAHC- 285 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~~~~~--~~~d~~~lp~--~d~sFDlVv~- 285 (452)
++.+|||+|||+|..+..+++ ..|+++|+++..+.... +.++..+..+.+ ..+|....+. ++++||.|++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 345899999999999988876 25677777666554443 333334555444 4455444443 4578999985
Q ss_pred ---c-ccccccccc----------------HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012961 286 ---S-RCRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 286 ---s-~~~l~~~~d----------------~~~~L~ei~RvLkPGG~lvi~~p~~ 320 (452)
+ ..+++..++ ...+|.++.++|||||++++++-..
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2 223332222 2459999999999999999987554
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.58 E-value=3.7e-07 Score=92.26 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=64.6
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
..+|||||||+|.++..+++. .|+++|+++..+..+. +.+++.+. ++.+..+|....+....+||+|++...
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g- 158 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG- 158 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc-
Confidence 458999999999999998862 3677777666554443 22233343 467777886655544567999998653
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.+. ....+.+.|+|||.+++..
T Consensus 159 ~~~------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDE------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHH------hHHHHHHhcCCCCEEEEEe
Confidence 222 3445778999999998854
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=98.56 E-value=1.1e-06 Score=89.56 Aligned_cols=126 Identities=15% Similarity=0.117 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHH------------cCCCeEEEEecCCC-CCCCC
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE------------RGIPSTLGVLGTKR-LPYPS 277 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~------------rg~~~~~~~~d~~~-lp~~d 277 (452)
++++||+||||+|..+..+++. .|+.+| +++.+++.|++ ...++.+++.|+.. +.-..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VE-----IDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVD-----LDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEe-----CCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 4568999999999988888864 344454 45555566664 13567888888655 33345
Q ss_pred CCceEEEecccccccc---c--cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 278 RSFELAHCSRCRIDWL---Q--RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 278 ~sFDlVv~s~~~l~~~---~--d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
+.||+|++... -... . .-..+++.+.+.|+|||.+++.....+. ....+..+.+.++++++.+.....
T Consensus 225 ~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~----~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 225 SLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD----APLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred CCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh----hHHHHHHHHHHHHHhCCceEEEEE
Confidence 68999997631 1110 0 1145899999999999999887543321 122334577888899997765443
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.54 E-value=2.1e-07 Score=88.43 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCCeEEE
Q 012961 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLG 266 (452)
Q Consensus 192 ~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~~~~~ 266 (452)
+......+.+.+.. .+..+|||||||+|+++..|+.. .|+++|..+.-...+....+.....++.+.
T Consensus 57 ~P~~~a~~l~~L~l--------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~ 128 (209)
T PF01135_consen 57 APSMVARMLEALDL--------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVV 128 (209)
T ss_dssp -HHHHHHHHHHTTC---------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEE
T ss_pred HHHHHHHHHHHHhc--------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEE
Confidence 34455556666653 24458999999999999988852 366787777555444433333323367888
Q ss_pred EecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 267 VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 267 ~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.+|...---....||.|++..+ ..- .-..+.+.|++||++++-.
T Consensus 129 ~gdg~~g~~~~apfD~I~v~~a-~~~------ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 129 VGDGSEGWPEEAPFDRIIVTAA-VPE------IPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp ES-GGGTTGGG-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEEE
T ss_pred EcchhhccccCCCcCEEEEeec-cch------HHHHHHHhcCCCcEEEEEE
Confidence 8886443223467999998764 331 2355777899999999854
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.54 E-value=6.2e-07 Score=94.76 Aligned_cols=124 Identities=17% Similarity=0.205 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEe---
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC--- 285 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~--- 285 (452)
++.+|||+|||+|..+..+++ ..|+++|+++..+.... +.+.+.|. ++.+...|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 345899999999998887764 25777777776665444 33344454 4678888887765 4578999995
Q ss_pred -ccc-cc------cccc----------cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCEE
Q 012961 286 -SRC-RI------DWLQ----------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKI 345 (452)
Q Consensus 286 -s~~-~l------~~~~----------d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~-Gf~~ 345 (452)
+.. ++ .|.. ....+|.++.++|||||++++++-....... -..+..+++.. +|..
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~En-----e~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEEN-----ELQIEAFLQRHPEFSA 401 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhH-----HHHHHHHHHhCCCCEE
Confidence 221 11 1111 1235899999999999999998754432111 12355666654 4554
No 131
>PRK03612 spermidine synthase; Provisional
Probab=98.52 E-value=8.4e-07 Score=95.51 Aligned_cols=125 Identities=15% Similarity=0.049 Sum_probs=82.1
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHc------------CCCeEEEEecCCCC-CCCCCCce
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKRL-PYPSRSFE 281 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~r------------g~~~~~~~~d~~~l-p~~d~sFD 281 (452)
++++|||||||+|..+..++++.. ...+...|+++.+++.+++. ..+++++..|..+. ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 456899999999999998876410 02333334555555666551 24577888886553 22346899
Q ss_pred EEEecccccccccc-----HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEE
Q 012961 282 LAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (452)
Q Consensus 282 lVv~s~~~l~~~~d-----~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 345 (452)
+|++.. ..+..+. ...+++.+.+.|+|||.+++.....+.. .+.+.++.+.+++.||.+
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCEE
Confidence 999864 2222221 1358999999999999999876443322 233567888899999943
No 132
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=7.1e-07 Score=84.09 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=62.9
Q ss_pred CCCEEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCC-CCCCCCCceEEEeccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~-lp~~d~sFDlVv~s~~~l 290 (452)
+..+|||||||+|+.++.|++ ..|++++..+.-...+..+ -...|. ++.+.++|... ++ +...||.|+...+ .
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~-L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~Vtaa-a 148 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRN-LETLGYENVTVRHGDGSKGWP-EEAPYDRIIVTAA-A 148 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHH-HHHcCCCceEEEECCcccCCC-CCCCcCEEEEeec-c
Confidence 456899999999999999987 3667776655433333222 222344 68888888533 33 3378999997664 3
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.. .-+.+.+-|++||++++-.
T Consensus 149 ~~------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 149 PE------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred CC------CCHHHHHhcccCCEEEEEE
Confidence 32 2345667899999999854
No 133
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=1.1e-06 Score=92.79 Aligned_cols=125 Identities=14% Similarity=0.196 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCC--CCCCCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp--~~d~sFDlVv~s 286 (452)
+..+|||+|||+|..+..+++. .|+++|+++..+.... +.+.+.+. ++.+...|...++ ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 3458999999999999888763 4677777666554443 33333443 4678888876653 33 689999963
Q ss_pred c-----ccccccc---------c-------HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCE
Q 012961 287 R-----CRIDWLQ---------R-------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWK 344 (452)
Q Consensus 287 ~-----~~l~~~~---------d-------~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~-Gf~ 344 (452)
. ..+...+ + ...+|.++.++|||||.+++++-...... .-..+..++++. .|+
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E-----ne~vv~~~l~~~~~~~ 402 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE-----NEEVIEAFLEEHPEFE 402 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh-----hHHHHHHHHHhCCCcE
Confidence 2 0111111 1 13479999999999999998764432111 112445556654 365
Q ss_pred EE
Q 012961 345 IV 346 (452)
Q Consensus 345 ~v 346 (452)
++
T Consensus 403 ~~ 404 (444)
T PRK14902 403 LV 404 (444)
T ss_pred Ee
Confidence 54
No 134
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.48 E-value=3.2e-07 Score=90.64 Aligned_cols=105 Identities=18% Similarity=0.367 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHc------CCCeEEEEecC------CCCCCCCCC
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGT------KRLPYPSRS 279 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~r------g~~~~~~~~d~------~~lp~~d~s 279 (452)
++..+||+|||-|.-+.-.-.+ .++++||+..-+.+++...-.-+ -..+.|+.+|. ..+++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 3447999999999866655443 56777777666655543322111 12467777773 234566667
Q ss_pred ceEEEecccccccc----ccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012961 280 FELAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 280 FDlVv~s~~~l~~~----~d~~~~L~ei~RvLkPGG~lvi~~p~~ 320 (452)
||+|-|.+| +|+. +....+|.++.+.|+|||+|+-+.|..
T Consensus 197 fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 197 FDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred cceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 999999984 7773 233569999999999999999888743
No 135
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.47 E-value=8.9e-07 Score=87.19 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEec--
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCS-- 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s-- 286 (452)
++.+|||+|||+|..+..+++. .|+++|+++..+.....+. +..+. ++.+...|...++...+.||.|++.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI-NRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3458999999999999888752 4777777766664444333 33343 4677778877666555679999862
Q ss_pred --c-cccc--------ccc--------cHHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 287 --R-CRID--------WLQ--------RDGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 287 --~-~~l~--------~~~--------d~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
. .++. +.+ ....+|.++.++|||||+++.++-.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1 1111 111 1234899999999999999988744
No 136
>PLN02366 spermidine synthase
Probab=98.46 E-value=1.5e-06 Score=87.38 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHc---------CCCeEEEEecCCCC--CCCCCC
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL--PYPSRS 279 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~r---------g~~~~~~~~d~~~l--p~~d~s 279 (452)
++++||+||||.|.++..+++. +|+.+|+++. .++.|++. ..++.++..|+... ..+++.
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~-----Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKM-----VIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHH-----HHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 4568999999999999999874 3444555543 44444432 24678888885432 123568
Q ss_pred ceEEEecccccccccc----HHHHHHHHHHhcCCCcEEEEEeCCCC
Q 012961 280 FELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 321 (452)
Q Consensus 280 FDlVv~s~~~l~~~~d----~~~~L~ei~RvLkPGG~lvi~~p~~~ 321 (452)
||+|++.. .-++.+. ...+++.+.++|+|||.+++.....+
T Consensus 166 yDvIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~ 210 (308)
T PLN02366 166 YDAIIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMW 210 (308)
T ss_pred CCEEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcc
Confidence 99999743 2222221 14589999999999999987665444
No 137
>PRK04457 spermidine synthase; Provisional
Probab=98.46 E-value=4.9e-07 Score=88.93 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=65.4
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHc------CCCeEEEEecCCCC-CCCCCCceEEEecc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRL-PYPSRSFELAHCSR 287 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~r------g~~~~~~~~d~~~l-p~~d~sFDlVv~s~ 287 (452)
.+++|||||||.|.++..++... ....+...|+++..++.|++. ..++.++++|.... .-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45689999999999999887631 122333334445555555543 24577888886432 22236799999742
Q ss_pred ccccccc---cHHHHHHHHHHhcCCCcEEEEEe
Q 012961 288 CRIDWLQ---RDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 288 ~~l~~~~---d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
..-...+ ....+++++.++|+|||.+++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 1001111 12579999999999999999853
No 138
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.45 E-value=7.2e-07 Score=93.85 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=71.4
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCC-CCCCCceEEEe--
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHC-- 285 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp-~~d~sFDlVv~-- 285 (452)
++.+|||+|||+|..+.+++. ..|+++|++...+.... +.+...+. ++.+...|...++ +.+++||.|++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 345899999999998888775 25777777766664443 33333454 3678888887765 44578999996
Q ss_pred --cc-ccccccc----------------cHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012961 286 --SR-CRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 286 --s~-~~l~~~~----------------d~~~~L~ei~RvLkPGG~lvi~~p~~ 320 (452)
+. ..+...+ ....+|.++.+.|||||++++++-..
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 21 1121111 12447999999999999999987543
No 139
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.45 E-value=7.9e-07 Score=81.43 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=62.4
Q ss_pred CCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHc---CCCeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~r---g~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
..+|||||||+|.++..++++ .++++|+++..+ +.++++ ..++.+..+|+..+++++..||.|+++. -+
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~-----~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py 87 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAARVTAIEIDPRLA-----PRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-PY 87 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHH-----HHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC-Cc
Confidence 348999999999999999875 566666655444 444333 2367889999999988877899999754 23
Q ss_pred cccccHHHHHHHHHHh--cCCCcEEEEEe
Q 012961 291 DWLQRDGILLLELDRL--LRPGGYFVYSS 317 (452)
Q Consensus 291 ~~~~d~~~~L~ei~Rv--LkPGG~lvi~~ 317 (452)
+.. ...+..+.+. +.++|.+++..
T Consensus 88 ~~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 88 NIS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred ccH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 321 2233333322 45788888743
No 140
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.44 E-value=2.5e-06 Score=84.29 Aligned_cols=122 Identities=13% Similarity=0.109 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEecCCCC-CCCCCCceEEEe
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL-PYPSRSFELAHC 285 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~----rg~~~~~~~~d~~~l-p~~d~sFDlVv~ 285 (452)
++++||+||||+|.++..++.. .++.+|+++..+..+...+... ...++.+...|.... ....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3458999999999999888764 3556666554443332211111 123466666665332 222468999997
Q ss_pred cccccccccc----HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhC
Q 012961 286 SRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (452)
Q Consensus 286 s~~~l~~~~d----~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~ 341 (452)
... .+.... ...+++.+.++|+|||.+++.....+.. ...+..+.+.+++.
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~~~~tl~~~ 206 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQ----LELITDLKRDVKEA 206 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccC----HHHHHHHHHHHHHH
Confidence 542 222111 2568899999999999999875433321 22344455555554
No 141
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=2.4e-06 Score=82.46 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg--~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
++.+|||.|.|+|.++.+|+. ..|++.++.......+..++ ++.+ ..+.+...|..+.-+++ .||+|+.
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl-~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L-- 169 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL-SEFGLGDRVTLKLGDVREGIDEE-DVDAVFL-- 169 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHH-HHhccccceEEEecccccccccc-ccCEEEE--
Confidence 455999999999999999995 35666766554433333222 2222 23677778877776664 8999973
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEE
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 347 (452)
. ++++-.++..+.++|+|||.+++-.|... ..+...+.+++.||..++
T Consensus 170 ---D-mp~PW~~le~~~~~Lkpgg~~~~y~P~ve--------Qv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 170 ---D-LPDPWNVLEHVSDALKPGGVVVVYSPTVE--------QVEKTVEALRERGFVDIE 217 (256)
T ss_pred ---c-CCChHHHHHHHHHHhCCCcEEEEEcCCHH--------HHHHHHHHHHhcCccchh
Confidence 3 47788899999999999999999877542 234455566677886554
No 142
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2.8e-06 Score=84.37 Aligned_cols=120 Identities=20% Similarity=0.268 Sum_probs=75.4
Q ss_pred EEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
+|||||||+|.++..++.. .|+++|+++..+.-+. +.|...+. ++.++..|.. -+.. ++||+|+|+---+..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dlf-~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDLF-EPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeecc-cccC-CceeEEEeCCCCCCC
Confidence 7999999999999999863 5666766665554433 33333453 3333433321 1233 489999986321111
Q ss_pred c------------------------ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCC-CEEEE
Q 012961 293 L------------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 347 (452)
Q Consensus 293 ~------------------------~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~G-f~~v~ 347 (452)
. .-...++.++.+.|+|||.+++..-.. .-+.+.+++.+.| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~---------q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT---------QGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC---------cHHHHHHHHHhcCCceEEE
Confidence 0 011348888999999999999865221 1357889999999 66554
Q ss_pred EE
Q 012961 348 KK 349 (452)
Q Consensus 348 ~~ 349 (452)
..
T Consensus 261 ~~ 262 (280)
T COG2890 261 TL 262 (280)
T ss_pred EE
Confidence 44
No 143
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.43 E-value=2.9e-06 Score=83.36 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=90.4
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHc---------------------------------
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--------------------------------- 259 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~r--------------------------------- 259 (452)
...+||--|||.|.++-.++.. .+.+.+++..|+-.. ++....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4458999999999999999975 334445444443111 111111
Q ss_pred ---------CCCeEEEEecCCCCCCCC---CCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChh-
Q 012961 260 ---------GIPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE- 326 (452)
Q Consensus 260 ---------g~~~~~~~~d~~~lp~~d---~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~- 326 (452)
..+.....+|..++..++ ++||+|++.+ .+.-..+.-.+++.|.++|||||++|=..|-.|...+.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 001222334443443333 6899999876 56666667779999999999999999888877665543
Q ss_pred ------hHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 327 ------NRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 327 ------~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
..-.++++..++++.||+++..+.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 223689999999999999987765
No 144
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.42 E-value=6.5e-07 Score=84.32 Aligned_cols=105 Identities=21% Similarity=0.327 Sum_probs=62.0
Q ss_pred CCCEEEEECCCCc----hHHHHHhh--CCC--ccccCChhhhhHHHHHHHHHc-----------------------C---
Q 012961 215 NIRNVLDVGCGVA----SFGAYLLS--HDI--IAMSLAPNDVHENQIQFALER-----------------------G--- 260 (452)
Q Consensus 215 ~~~~VLDIGCG~G----~~~~~La~--~~v--~~vdis~~dis~~~~~~A~~r-----------------------g--- 260 (452)
..-+|+.+||++| +++..|.+ ... ..+.|.+.|++..+++.|++- +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 34444444 111 246777777777777777642 0
Q ss_pred -------CCeEEEEecCCCCCCCCCCceEEEeccccccccccH-HHHHHHHHHhcCCCcEEEEEeCC
Q 012961 261 -------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 261 -------~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~-~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
..+.|...|+.+.+.+.+.||+|+|.+.++.+.... ..+++.+++.|+|||+|++....
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 124667777666333457899999999655553332 66999999999999999996543
No 145
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.36 E-value=2.3e-06 Score=81.93 Aligned_cols=132 Identities=19% Similarity=0.189 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHH-HcCC----------------CeEEEEecCCCCCCCC
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL-ERGI----------------PSTLGVLGTKRLPYPS 277 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~-~rg~----------------~~~~~~~d~~~lp~~d 277 (452)
...+||..|||.|.-+.+|+++ |.++.+.|+++.+++.+. +++. ++.+.++|...++-..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 3458999999999999999986 444455555555556552 2221 3467788887776433
Q ss_pred -CCceEEEecccccccccc-HHHHHHHHHHhcCCCcEEEEEe---CCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 278 -RSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFVYSS---PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 278 -~sFDlVv~s~~~l~~~~d-~~~~L~ei~RvLkPGG~lvi~~---p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
++||+|+=..++....++ ...+.+.+.++|+|||.+++.+ +......+-..-.-+++.+++. .+|++...+.
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 479999864433322233 3669999999999999944332 1111111111112257888887 7888876654
No 146
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.36 E-value=4.6e-06 Score=88.11 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=78.5
Q ss_pred CCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCC----CCCCCCCceEEEeccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~----lp~~d~sFDlVv~s~~ 288 (452)
..+|||+|||+|.++..|+.. .|+++|+++.++..+.. .+...+. ++.+..+|+.+ +++.+++||+|++.--
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP 376 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP 376 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC
Confidence 358999999999999999863 57777777776655543 3333343 57888888653 3355578999996531
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
+.. ....+..+.+ ++|++.++++..+.- .-.++..+ .+.||++.+.+..
T Consensus 377 ---r~g-~~~~~~~l~~-~~~~~ivyvSCnp~t--------laRDl~~L-~~~gY~l~~i~~~ 425 (443)
T PRK13168 377 ---RAG-AAEVMQALAK-LGPKRIVYVSCNPAT--------LARDAGVL-VEAGYRLKRAGML 425 (443)
T ss_pred ---CcC-hHHHHHHHHh-cCCCeEEEEEeChHH--------hhccHHHH-hhCCcEEEEEEEe
Confidence 211 2345555555 689999999864321 01234433 4679998877654
No 147
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.35 E-value=1.7e-06 Score=96.36 Aligned_cols=124 Identities=16% Similarity=0.160 Sum_probs=82.6
Q ss_pred CCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHcCC---CeEEEEecCCCC-CCCCCCceEEEeccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL-PYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg~---~~~~~~~d~~~l-p~~d~sFDlVv~s~~ 288 (452)
+++|||+|||+|.++..++.. .|+++|+++..+..+..+.+. .+. ++.++.+|+.+. .-..++||+|++.--
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~-ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL-NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 358999999999999999863 477787777776655543333 333 478888886442 111468999998531
Q ss_pred cc----------cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 289 RI----------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 289 ~l----------~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
.+ ....+...++..+.++|+|||.++++..... +......+.+.|+.+...+
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------FKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CChhHHHHHhCCCeEEEEe
Confidence 11 1122345688899999999999988654321 1122667778898876554
No 148
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.33 E-value=1.4e-06 Score=83.77 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=76.6
Q ss_pred CEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCC---CCCCCCceEEEeccc
Q 012961 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL---PYPSRSFELAHCSRC 288 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~l---p~~d~sFDlVv~s~~ 288 (452)
..+||||||.|.+...+|+. .++||++...-+..+. +.+.+.++ ++.+...|+..+ -+++++.|-|+..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-
Confidence 37999999999999999973 6788888776665444 66677788 888888886554 24556999999776
Q ss_pred cccccccH--------HHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~~d~--------~~~L~ei~RvLkPGG~lvi~~ 317 (452)
--+|.... ..+++.+.++|+|||.+.+.+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 35554322 349999999999999999965
No 149
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.30 E-value=7.1e-06 Score=79.04 Aligned_cols=120 Identities=19% Similarity=0.202 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHcCCCeE-EEEecCC-----CCCCCCCCceEEEe
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTK-----RLPYPSRSFELAHC 285 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg~~~~-~~~~d~~-----~lp~~d~sFDlVv~ 285 (452)
...+|||+|||+|.|+..+++. .|+++|++..++... .....++. +...++. +++..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~-----l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK-----LRQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH-----HhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 4458999999999999999874 577777766555432 22222221 2222333 22212236887776
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCC------------Ch-hhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH------------DP-ENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~------------~~-~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
+.+ ..+..+.++|+| |.+++-.-+.+.- ++ ......+++...+.+.||++....
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKII 216 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEE
Confidence 652 258899999999 8777544332221 11 112234567777888999876544
No 150
>PHA03412 putative methyltransferase; Provisional
Probab=98.28 E-value=2.6e-06 Score=81.98 Aligned_cols=95 Identities=8% Similarity=0.066 Sum_probs=64.0
Q ss_pred CEEEEECCCCchHHHHHhhCC--CccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccc--
Q 012961 217 RNVLDVGCGVASFGAYLLSHD--IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW-- 292 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~~--v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~-- 292 (452)
.+|||+|||+|.++..++... .....+.+.|+++.+++.|++....+.+...|+...++ +++||+|+++--....
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccc
Confidence 489999999999999887520 01234555566666777777665668888888876665 4689999986321100
Q ss_pred ---c------ccHHHHHHHHHHhcCCCcE
Q 012961 293 ---L------QRDGILLLELDRLLRPGGY 312 (452)
Q Consensus 293 ---~------~d~~~~L~ei~RvLkPGG~ 312 (452)
. .-...++..+.+++++|+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 0 1124488888897777775
No 151
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.28 E-value=2.7e-06 Score=82.34 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=65.5
Q ss_pred CCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCC-C-----CCCCCceE
Q 012961 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 282 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~l-p-----~~d~sFDl 282 (452)
+++|||||||+|+.+..++. ..++++|+++..+..+. +..++.+. .+.+..+|+.+. + .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 45899999999997777764 25777777765554443 23333343 477888886543 1 12468999
Q ss_pred EEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 283 Vv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
|+.-.. -+....++..+.++|+|||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 985431 2334568999999999999988744
No 152
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.26 E-value=2.8e-06 Score=82.11 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=68.1
Q ss_pred CCCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
...++|||||+|.|.++..++++ +++..| + +..++.+++ ..++.+..+|.. -++|. +|+++..+.+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~D-----l-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFD-----L-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeec-----c-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhh
Confidence 34568999999999999999863 233343 3 333455555 667999999986 66764 9999999955
Q ss_pred ccccccH-HHHHHHHHHhcCCC--cEEEEEeC
Q 012961 290 IDWLQRD-GILLLELDRLLRPG--GYFVYSSP 318 (452)
Q Consensus 290 l~~~~d~-~~~L~ei~RvLkPG--G~lvi~~p 318 (452)
.+|.++. ..+|+++++.|+|| |+++|.+.
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 4554332 55999999999999 99999774
No 153
>PLN02672 methionine S-methyltransferase
Probab=98.23 E-value=5.8e-06 Score=94.75 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=80.6
Q ss_pred CCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHc----------------CCCeEEEEecCCCCCC
Q 012961 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----------------GIPSTLGVLGTKRLPY 275 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~r----------------g~~~~~~~~d~~~lp~ 275 (452)
..+|||+|||+|.++..++.. .++++|+++..+..+..+..+.. ..++.+...|.....-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 348999999999999999863 57888888777766554443311 0247888888654321
Q ss_pred C-CCCceEEEeccccc-------------cc------------c--------ccH----HHHHHHHHHhcCCCcEEEEEe
Q 012961 276 P-SRSFELAHCSRCRI-------------DW------------L--------QRD----GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 276 ~-d~sFDlVv~s~~~l-------------~~------------~--------~d~----~~~L~ei~RvLkPGG~lvi~~ 317 (452)
. ...||+|+++---+ .+ . .+. ..++.++.++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 13699999852111 00 0 111 457888889999999999854
Q ss_pred CCCCCCChhhHHHHHHHH-HHHHhCCCEEEE
Q 012961 318 PEAYAHDPENRRIWNAMY-DLLKSMCWKIVS 347 (452)
Q Consensus 318 p~~~~~~~~~~~~~~~l~-~ll~~~Gf~~v~ 347 (452)
-. ..-+.+. +++++.||+.+.
T Consensus 279 G~---------~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 279 GG---------RPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred Cc---------cHHHHHHHHHHHHCCCCeeE
Confidence 21 1124677 689999997654
No 154
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.22 E-value=6.7e-06 Score=77.73 Aligned_cols=120 Identities=15% Similarity=0.222 Sum_probs=80.8
Q ss_pred CCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCC---CCCceEEEeccccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCRIDW 292 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~---d~sFDlVv~s~~~l~~ 292 (452)
.-++|||||=+......-.. -+|+..+|+... .-.+...|....|.| ++.||+|+|+. +++|
T Consensus 52 ~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SL-VLNf 116 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSL-VLNF 116 (219)
T ss_pred cceEEeecccCCCCcccccC----ceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEE-EEee
Confidence 35899999875543222111 233444444221 123456777777664 67899999999 8999
Q ss_pred cccH---HHHHHHHHHhcCCCcE-----EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 293 LQRD---GILLLELDRLLRPGGY-----FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 293 ~~d~---~~~L~ei~RvLkPGG~-----lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
++++ ..+++.+.+.|+|+|. |+|+.|..-. .....-..+.+..+++.+||..++.+..
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv-~NSRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV-TNSRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh-hcccccCHHHHHHHHHhCCcEEEEEEec
Confidence 9887 4599999999999999 9998885421 0001112357889999999999887653
No 155
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.22 E-value=1.2e-05 Score=84.53 Aligned_cols=121 Identities=16% Similarity=0.155 Sum_probs=76.5
Q ss_pred CCEEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEEecCCCC----CCCCCCceEEEeccc
Q 012961 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL----PYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~rg-~~~~~~~~d~~~l----p~~d~sFDlVv~s~~ 288 (452)
..+|||+|||+|.++..|++ ..|+++|+++.++..+.. .+...+ .++.+..+|+.+. ++.+++||+|+..-.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence 35899999999999999986 357788877776655543 333333 3578888886542 234567999986432
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
...-...+++.+.+ |+|++.++++..+ . .+..-...+.+.||++...+.
T Consensus 372 ---r~G~~~~~l~~l~~-l~~~~ivyvsc~p------~---tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 372 ---RKGCAAEVLRTIIE-LKPERIVYVSCNP------A---TLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred ---CCCCCHHHHHHHHh-cCCCEEEEEcCCH------H---HHHHHHHHHHHCCeeEEEEEE
Confidence 11112446666554 8899988876422 1 122223345567898776554
No 156
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.21 E-value=1.4e-05 Score=80.83 Aligned_cols=97 Identities=21% Similarity=0.349 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHHHhcCCC-CccCCCCCCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCC--C
Q 012961 190 DGADKYILALARMLKFPS-DKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--P 262 (452)
Q Consensus 190 ~~~~~y~~~l~~~l~~~~-~~l~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~--~ 262 (452)
+++-.|+..+.+++.... ..++. +...++||||||+|.+...|+.+ .++++|+++..+..++...+...+. .
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~-~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~ 167 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPR-GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGA 167 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCC-CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCc
Confidence 457788888888876432 12232 34568999999999887777642 5677777776665555444433123 3
Q ss_pred eEEEE-ecCCCCC----CCCCCceEEEecc
Q 012961 263 STLGV-LGTKRLP----YPSRSFELAHCSR 287 (452)
Q Consensus 263 ~~~~~-~d~~~lp----~~d~sFDlVv~s~ 287 (452)
+.+.. .+...+. .+++.||+|+|+-
T Consensus 168 I~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 168 IRLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEEEccchhhhhhcccccCCceEEEEeCC
Confidence 44433 2222221 2456899999975
No 157
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.21 E-value=1e-05 Score=79.56 Aligned_cols=138 Identities=20% Similarity=0.320 Sum_probs=91.8
Q ss_pred cCCCCCCCEEEEECCCCchHHHHHhhC------CCccccCChhhhhHHHHHHHHHcCCC--eEEEEecCCCCC-CC--CC
Q 012961 210 LNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLP-YP--SR 278 (452)
Q Consensus 210 l~~~~~~~~VLDIGCG~G~~~~~La~~------~v~~vdis~~dis~~~~~~A~~rg~~--~~~~~~d~~~lp-~~--d~ 278 (452)
+...+.+-+||||.||.|.+....... .|.-.|+++..+.... +.++++|.. +.|...|+.+.. +. +-
T Consensus 130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p 208 (311)
T PF12147_consen 130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDP 208 (311)
T ss_pred HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCC
Confidence 333456678999999999876665542 3445566666654444 455566654 378888854431 21 34
Q ss_pred CceEEEeccccccccccH---HHHHHHHHHhcCCCcEEEEEeCCCCCCChhh---------HHHH-------HHHHHHHH
Q 012961 279 SFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEAYAHDPEN---------RRIW-------NAMYDLLK 339 (452)
Q Consensus 279 sFDlVv~s~~~l~~~~d~---~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~---------~~~~-------~~l~~ll~ 339 (452)
..++++.+. +++.++|- ...+..+.++|.|||+++.+.-+.....+.. ...| .+|.++++
T Consensus 209 ~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 209 APTLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVE 287 (311)
T ss_pred CCCEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHH
Confidence 579999887 78887774 4478899999999999999874432222100 0123 68999999
Q ss_pred hCCCEEEEEE
Q 012961 340 SMCWKIVSKK 349 (452)
Q Consensus 340 ~~Gf~~v~~~ 349 (452)
.+||+.+...
T Consensus 288 ~aGF~K~~q~ 297 (311)
T PF12147_consen 288 AAGFEKIDQR 297 (311)
T ss_pred HcCCchhhhe
Confidence 9999866544
No 158
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.21 E-value=1.4e-05 Score=77.81 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCC---CCCceEEE
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYP---SRSFELAH 284 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~---d~sFDlVv 284 (452)
++.+|||.|.|+|.++.+|+. ..|...|+...-...+..++. ..+. ++.+...|...-.|+ +..||.|+
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Davf 118 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDVCEEGFDEELESDFDAVF 118 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-GGCG--STT-TTSEEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecceecccccccccCcccEEE
Confidence 455999999999999999986 256666665544433333322 3343 478888887654442 36799997
Q ss_pred eccccccccccHHHHHHHHHHhc-CCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 285 CSRCRIDWLQRDGILLLELDRLL-RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvL-kPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
. . ++++-.++..+.++| |+||++++-.|.. .........+++.||..++...
T Consensus 119 L-----D-lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i--------eQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 119 L-----D-LPDPWEAIPHAKRALKKPGGRICCFSPCI--------EQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp E-----E-SSSGGGGHHHHHHHE-EEEEEEEEEESSH--------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred E-----e-CCCHHHHHHHHHHHHhcCCceEEEECCCH--------HHHHHHHHHHHHCCCeeeEEEE
Confidence 3 3 466677999999999 8999999988754 2334566677888998775443
No 159
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.19 E-value=1.1e-05 Score=83.95 Aligned_cols=127 Identities=11% Similarity=0.073 Sum_probs=77.7
Q ss_pred CCEEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHHHcCC---CeEEEEecCCCCC--C--CCCCceEEEe
Q 012961 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLP--Y--PSRSFELAHC 285 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~~rg~---~~~~~~~d~~~lp--~--~d~sFDlVv~ 285 (452)
+.+|||+|||+|.++..++. ..|+++|+++..+..+..+. ...+. ++.+..+|+.++- + ..++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~-~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNV-ELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 35899999999999877553 25788888877776554333 33343 4678888865531 1 2468999998
Q ss_pred ccccccc--------cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEE
Q 012961 286 SRCRIDW--------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (452)
Q Consensus 286 s~~~l~~--------~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 346 (452)
.--.+.- ..+...++..+.++|+|||.++..+-..... . ....+.+.+.+.++|-++.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~-~--~~f~~~v~~aa~~~~~~~~ 365 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT-S--DLFQKIIADAAIDAGRDVQ 365 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC-H--HHHHHHHHHHHHHcCCeEE
Confidence 6321110 0123446667889999999999865332211 1 1122344555666665443
No 160
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.18 E-value=1.7e-05 Score=79.93 Aligned_cols=119 Identities=20% Similarity=0.248 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCchHHHHHh--hCCCccccCChhhhhHHHHHHHHHc----C-CCeEEEE-ecCCCCCCCCCCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALER----G-IPSTLGV-LGTKRLPYPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La--~~~v~~vdis~~dis~~~~~~A~~r----g-~~~~~~~-~d~~~lp~~d~sFDlVv~s 286 (452)
++..|||==||||++..... ...++|.|+ +..|++-|+.+ + ....+.. .|+..+|+++++||.|++-
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~viG~Di-----d~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGARVIGSDI-----DERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCceEeecch-----HHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence 44589999999999876653 344555555 45554444433 2 2333444 4999999998899999983
Q ss_pred c-----ccccc--ccc-HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 287 R-----CRIDW--LQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 287 ~-----~~l~~--~~d-~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
. +...- ..+ ...+|+.+.++|++||++++..|.. -...+...+|+++..-..
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-------------~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD-------------PRHELEELGFKVLGRFTM 331 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------------chhhHhhcCceEEEEEEE
Confidence 1 00111 111 2569999999999999999988722 123456789998865543
No 161
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.17 E-value=2.1e-05 Score=74.24 Aligned_cols=132 Identities=12% Similarity=0.048 Sum_probs=77.2
Q ss_pred CceeecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHh-h--CCCccccCChhhhhHHH
Q 012961 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL-S--HDIIAMSLAPNDVHENQ 252 (452)
Q Consensus 176 g~~~~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La-~--~~v~~vdis~~dis~~~ 252 (452)
|..+..+.+. .+.+..+...+.+.+.+... ....+|||+|||+|.++..++ . ..|+++|+++..+..+.
T Consensus 22 g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~-------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 22 GRKLPVPDSP-GLRPTTDRVRETLFNWLAPV-------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEeCCCCCC-CcCcCCHHHHHHHHHHHhhh-------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 3344443322 34556666666666655421 123489999999999998644 3 25677777665544333
Q ss_pred HHHHHHcCC-CeEEEEecCCC-CCCCCCCceEEEecccccccccc-HHHHHHHHHH--hcCCCcEEEEEeCC
Q 012961 253 IQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 319 (452)
Q Consensus 253 ~~~A~~rg~-~~~~~~~d~~~-lp~~d~sFDlVv~s~~~l~~~~d-~~~~L~ei~R--vLkPGG~lvi~~p~ 319 (452)
+.++..+. ++.+...|+.. ++...++||+|++.- +|... ...++..+.. +|+|+|.+++..+.
T Consensus 94 -~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP---Py~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 94 -KNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP---PFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -HHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC---CCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 22222333 57788888644 222345799999764 22222 2345555544 37999999987654
No 162
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.17 E-value=1e-05 Score=80.50 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=66.8
Q ss_pred CEEEEECCCCc----hHHHHHhhC--C-CccccCChhhhhHHHHHHHHHc--------C---------------------
Q 012961 217 RNVLDVGCGVA----SFGAYLLSH--D-IIAMSLAPNDVHENQIQFALER--------G--------------------- 260 (452)
Q Consensus 217 ~~VLDIGCG~G----~~~~~La~~--~-v~~vdis~~dis~~~~~~A~~r--------g--------------------- 260 (452)
-+|+..||++| +++..|.+. . -..+.|.+.|++..+++.|++. +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 344444442 0 1134566666666666666532 0
Q ss_pred -------CCeEEEEecCCCCCCC-CCCceEEEeccccccccc-cHHHHHHHHHHhcCCCcEEEEEe
Q 012961 261 -------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 261 -------~~~~~~~~d~~~lp~~-d~sFDlVv~s~~~l~~~~-d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
..+.|...|+...+++ .+.||+|+|.++.+++.. ....++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1135566666554443 578999999886555433 34669999999999999998865
No 163
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.16 E-value=3.3e-06 Score=80.17 Aligned_cols=127 Identities=18% Similarity=0.217 Sum_probs=83.2
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHc-------CCCeEEEEecCCCC--CCCCCCceE
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-------GIPSTLGVLGTKRL--PYPSRSFEL 282 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~r-------g~~~~~~~~d~~~l--p~~d~sFDl 282 (452)
.+.+|||...|-|+.+...+++ .|+.++.++.-+ +.|.-+ ...+.++.+|+.++ .|+|.+||+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-----eLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-----ELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-----EeeccCCCCccccccccEEecccHHHHHhcCCccccce
Confidence 4568999999999999988874 456666555444 333211 12457788886554 478999999
Q ss_pred EEecccccccccc--HHHHHHHHHHhcCCCcEEEEEe--CCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 283 AHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS--PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 283 Vv~s~~~l~~~~d--~~~~L~ei~RvLkPGG~lvi~~--p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
|+----.+..... -+.+.+|++|+|||||.++--+ |....+.. .....+.+.+++.||.++...
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~---d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL---DLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC---ChhHHHHHHHHhcCceeeeee
Confidence 9853222222222 2569999999999999998543 33111111 123567888999999977654
No 164
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.15 E-value=6.2e-06 Score=76.10 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=59.9
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcC----CCeEEEEecCCC-C--C-CCCCCceE
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKR-L--P-YPSRSFEL 282 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg----~~~~~~~~d~~~-l--p-~~d~sFDl 282 (452)
.+.+|||+|||+|..+..++.. .|+..|..+ +-+.....++..+ .++.+...+..+ . . .....||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4568999999999888777654 566666655 2222223333222 345566655433 1 1 23468999
Q ss_pred EEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 283 Vv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
|+++-+ +......+.+++.+.++|+++|.++++.+.
T Consensus 123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999985 555566688999999999999998887654
No 165
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=6.1e-06 Score=78.81 Aligned_cols=97 Identities=20% Similarity=0.383 Sum_probs=61.4
Q ss_pred CCCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcC---------CC-------------------
Q 012961 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG---------IP------------------- 262 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg---------~~------------------- 262 (452)
.+..+|||||-.|.++..+++ +.|+|+||++.-+. .|++.- ..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~-----~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQ-----RARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHH-----HHHHhccccccccccccCCCcccccccccccccccc
Confidence 345799999999999999986 46888877766554 443320 00
Q ss_pred ------------eEE----EEec-CCCCCCCCCCceEEEecc----ccccccccH-HHHHHHHHHhcCCCcEEEEE
Q 012961 263 ------------STL----GVLG-TKRLPYPSRSFELAHCSR----CRIDWLQRD-GILLLELDRLLRPGGYFVYS 316 (452)
Q Consensus 263 ------------~~~----~~~d-~~~lp~~d~sFDlVv~s~----~~l~~~~d~-~~~L~ei~RvLkPGG~lvi~ 316 (452)
+.+ .+.+ .+-+.+....||+|+|.- .-+.|.++. ..+++.+.++|.|||+|++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000 0111 111223345799999843 123343332 56999999999999999973
No 166
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.14 E-value=1.2e-05 Score=86.43 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=82.5
Q ss_pred CCCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCC--CCCCCCceEEEecc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL--PYPSRSFELAHCSR 287 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~l--p~~d~sFDlVv~s~ 287 (452)
....+||||||.|.++..++. ..++|+++...-+..+. ..+.+.+. ++.+...|+..+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 455899999999999999986 37888988876655554 33344444 455555554322 26788999999776
Q ss_pred ccccccccH--------HHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCC-CEEE
Q 012961 288 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIV 346 (452)
Q Consensus 288 ~~l~~~~d~--------~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~G-f~~v 346 (452)
--+|.... ..++..+.++|+|||.+.+.+- . ...++.+...+.+.+ |+..
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD------~--~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD------I--ENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC------C--HHHHHHHHHHHHhCCCeEec
Confidence 35554321 4499999999999999998652 1 122444555555554 7654
No 167
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.06 E-value=2.7e-05 Score=65.77 Aligned_cols=99 Identities=29% Similarity=0.435 Sum_probs=65.4
Q ss_pred EEEECCCCchHH--HHHhhC--CCccccCChhhhhHHHHHHHHHcCCC-eEEEEecCCC--CCCCC-CCceEEEeccccc
Q 012961 219 VLDVGCGVASFG--AYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKR--LPYPS-RSFELAHCSRCRI 290 (452)
Q Consensus 219 VLDIGCG~G~~~--~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~-~~~~~~d~~~--lp~~d-~sFDlVv~s~~~l 290 (452)
+||+|||+|... ..+... .++++|++..++......... .... +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999854 333322 355566665554441111111 2222 4667777665 77776 489999 666556
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEeCCC
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~ 320 (452)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 6555 6789999999999999999987654
No 168
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.05 E-value=4.6e-05 Score=76.96 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=76.0
Q ss_pred CCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCC-CCCCceEEEecccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRID 291 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~-~d~sFDlVv~s~~~l~ 291 (452)
+.+|||+|||+|.++..++.. .|+++|+++.++..+. +.++..+. ++.+..+|+..+.. ..+.||+|++.--
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP--- 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP--- 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---
Confidence 358999999999999999974 5778877777665544 33344444 48889998876542 2357999996531
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
.. .....+.++..-++|++.++++..+.-. -+++..+ .||++...+..
T Consensus 250 r~-G~~~~~~~~l~~~~~~~ivyvsc~p~t~--------~rd~~~l---~~y~~~~~~~~ 297 (315)
T PRK03522 250 RR-GIGKELCDYLSQMAPRFILYSSCNAQTM--------AKDLAHL---PGYRIERVQLF 297 (315)
T ss_pred CC-CccHHHHHHHHHcCCCeEEEEECCcccc--------hhHHhhc---cCcEEEEEEEe
Confidence 11 1112233334447888888887644320 1234443 58988776643
No 169
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.00 E-value=2.8e-05 Score=76.51 Aligned_cols=104 Identities=15% Similarity=0.215 Sum_probs=67.4
Q ss_pred CCCEEEEECCCCc----hHHHHHhhCCC----ccccCChhhhhHHHHHHHHHc---------CC----------------
Q 012961 215 NIRNVLDVGCGVA----SFGAYLLSHDI----IAMSLAPNDVHENQIQFALER---------GI---------------- 261 (452)
Q Consensus 215 ~~~~VLDIGCG~G----~~~~~La~~~v----~~vdis~~dis~~~~~~A~~r---------g~---------------- 261 (452)
..-+|+-+||++| +++..|.+... ..+.|.+.|++...++.|+.- +.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3568999999999 44555544321 245666667777766666532 11
Q ss_pred ---------CeEEEEecCCCCCCCCCCceEEEeccccccccccH-HHHHHHHHHhcCCCcEEEEEeC
Q 012961 262 ---------PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 262 ---------~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~-~~~L~ei~RvLkPGG~lvi~~p 318 (452)
.+.|...|+..-++..+.||+|+|-+.++.+.... ..++..++..|+|||+|++...
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 12344444433332346799999999655543332 5699999999999999999653
No 170
>PLN02476 O-methyltransferase
Probab=97.98 E-value=2.2e-05 Score=77.66 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=67.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCC-CC-C----CCCCce
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y----PSRSFE 281 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~-lp-~----~d~sFD 281 (452)
++++|||||+|+|+.+.+++.. .++++|..+.....+. +..++.|. ++.+..+++.+ |+ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar-~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK-RYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3458999999999999999862 4677777765544433 33334444 47788887543 22 1 136899
Q ss_pred EEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 282 lVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
+|+.-. .-.+...+++.+.++|+|||.+++-.
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 998533 22344668999999999999988743
No 171
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.96 E-value=6.2e-05 Score=73.24 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCCCeEEE
Q 012961 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLG 266 (452)
Q Consensus 191 ~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~~~~~~ 266 (452)
..+.+.+.+.+.++.... .....|||+|||+|.++..++. ..++++|++...+.-+. +.|+..+....+.
T Consensus 129 ETEE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIE 202 (328)
T ss_pred cHHHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceE
Confidence 456677777666654321 1233799999999999998875 35667766665554433 2333223222222
Q ss_pred Ee------c-CCCCCCCCCCceEEEecccccccc-------------------------ccHHHHHHHHHHhcCCCcEEE
Q 012961 267 VL------G-TKRLPYPSRSFELAHCSRCRIDWL-------------------------QRDGILLLELDRLLRPGGYFV 314 (452)
Q Consensus 267 ~~------d-~~~lp~~d~sFDlVv~s~~~l~~~-------------------------~d~~~~L~ei~RvLkPGG~lv 314 (452)
+. | ....+..++.+|+++|+--.+..- .....++.-+.|.|+|||.+.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 22 2 233345578999999863211110 011225667779999999999
Q ss_pred EEeC
Q 012961 315 YSSP 318 (452)
Q Consensus 315 i~~p 318 (452)
+...
T Consensus 283 le~~ 286 (328)
T KOG2904|consen 283 LELV 286 (328)
T ss_pred EEec
Confidence 8764
No 172
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.96 E-value=2.4e-05 Score=74.18 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=66.1
Q ss_pred CCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCC-C-----CCCCCceE
Q 012961 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 282 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~l-p-----~~d~sFDl 282 (452)
+++||||||++|+.+.+|+. ..|+++|+.+.....+. +..++.|. ++.+..+|+.+. + .+.++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 45899999999999999986 35777777665443332 33344443 578888886432 2 11358999
Q ss_pred EEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 283 Vv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
|+.-. .-.+...++..+.++|+|||.+++-.
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 98543 23445668889999999999999854
No 173
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.95 E-value=3.7e-05 Score=73.37 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=65.7
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCC--eEEEE-ecCCC-CC-CCCCCceEEE
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP--STLGV-LGTKR-LP-YPSRSFELAH 284 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~--~~~~~-~d~~~-lp-~~d~sFDlVv 284 (452)
.+++|||||.+.|+.+.+|+.. .++++|+.+.....+...++ +.|.. +.+.. +|+.+ +. ...++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 3458999999999999999863 46677766655544443332 33433 44555 35322 22 3458999998
Q ss_pred eccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.-. .-.+...++..+.++|+|||.+++-.
T Consensus 138 IDa----dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 IDA----DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EeC----ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 432 23445779999999999999999743
No 174
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.93 E-value=0.00011 Score=76.12 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=75.7
Q ss_pred CEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCC-CCCCceEEEeccccccc
Q 012961 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW 292 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~-~d~sFDlVv~s~~~l~~ 292 (452)
.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..+. ++.+..+|+..+.. ..++||+|++.-- .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 48999999999999999863 5777877776664444 33333444 57888888755321 1246999986531 2
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
..-...+++.+. .++|++.++++..+.- .-+++..+ .||++...+..
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~p~T--------laRDl~~L---~gy~l~~~~~~ 357 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCNAQT--------MAKDIAEL---SGYQIERVQLF 357 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeCHHH--------HHHHHHHh---cCceEEEEEEe
Confidence 111234555554 4799999998763321 12344444 58988776643
No 175
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.92 E-value=2e-05 Score=80.81 Aligned_cols=98 Identities=18% Similarity=0.306 Sum_probs=77.3
Q ss_pred EEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 218 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~~r-g~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
.++|+|||.|....++.. ..+++++.....+........... .....+...+....|+++++||.+.+.. +..|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld-~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE-VVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe-ecccC
Confidence 699999999998888874 467788777766655553333221 1223457788899999999999999877 67889
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEE
Q 012961 294 QRDGILLLELDRLLRPGGYFVYS 316 (452)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvi~ 316 (452)
++...++.|++|+++|||+++..
T Consensus 192 ~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 192 PDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CcHHHHHHHHhcccCCCceEEeH
Confidence 99999999999999999999973
No 176
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.91 E-value=5.5e-06 Score=80.98 Aligned_cols=99 Identities=25% Similarity=0.227 Sum_probs=71.4
Q ss_pred CCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d 295 (452)
...+||+|||.|-++..- ..+-+.+.|++...+..++..+.. ...++|+..+|+.+.+||.+++.. ++||+..
T Consensus 46 gsv~~d~gCGngky~~~~-----p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN-----PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLST 118 (293)
T ss_pred cceeeecccCCcccCcCC-----CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhhh
Confidence 457999999999654321 122334445666666666655432 577889999999999999999766 6777643
Q ss_pred H---HHHHHHHHHhcCCCcEEEEEeCCCC
Q 012961 296 D---GILLLELDRLLRPGGYFVYSSPEAY 321 (452)
Q Consensus 296 ~---~~~L~ei~RvLkPGG~lvi~~p~~~ 321 (452)
. ..+++|+.|+|||||...+......
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 3 5599999999999999888764443
No 177
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.88 E-value=1.8e-05 Score=79.50 Aligned_cols=98 Identities=16% Similarity=0.277 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHHHcCCC--eEEEEecCCCCCCCCCCceEEEecccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~~rg~~--~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
+.++|||||||+|.++..-++ +.|++++.+.+. .-+.+.++..+.. +.+..+.++++.+|.+..|+|++-...
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 345899999999999888876 367888776543 4444566666544 566666677776667889999974311
Q ss_pred --ccccccHHHHHHHHHHhcCCCcEEE
Q 012961 290 --IDWLQRDGILLLELDRLLRPGGYFV 314 (452)
Q Consensus 290 --l~~~~d~~~~L~ei~RvLkPGG~lv 314 (452)
+-+-.-...+|-.=.+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1011112345666678999999887
No 178
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.87 E-value=7.9e-05 Score=67.58 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=80.1
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC-----CCCCCceEEEecccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCR 289 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp-----~~d~sFDlVv~s~~~ 289 (452)
.+.-|||+|.|+|.++..++.+.+---++..++.+........++...+.++.+|+.++. +.+..||.|+|.--+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 455799999999999999998766666777777777777777777777888888877664 556789999987655
Q ss_pred ccccccH-HHHHHHHHHhcCCCcEEEEEe
Q 012961 290 IDWLQRD-GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 290 l~~~~d~-~~~L~ei~RvLkPGG~lvi~~ 317 (452)
+.+.... -++|+++...|++||.++...
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 5543333 458999999999999999654
No 179
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00014 Score=68.38 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=62.8
Q ss_pred CCCEEEEECCCCchHHHHHhh-CCCccccCChhhhhHHHHHHHHHc---------------CCCeEEEEecCCCCCCCCC
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALER---------------GIPSTLGVLGTKRLPYPSR 278 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-~~v~~vdis~~dis~~~~~~A~~r---------------g~~~~~~~~d~~~lp~~d~ 278 (452)
++.+.||||.|+|+++..++. -.-.+.+..+++..+..++.+.+. ..+..++++|....--+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 345799999999999887763 111222223334444444444332 1245678888877766678
Q ss_pred CceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEE
Q 012961 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (452)
Q Consensus 279 sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~ 316 (452)
.||.|++..++ ....+++...|++||.+++-
T Consensus 162 ~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 162 PYDAIHVGAAA-------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CcceEEEccCc-------cccHHHHHHhhccCCeEEEe
Confidence 89999986432 24678888899999999983
No 180
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.83 E-value=3.2e-05 Score=81.62 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=60.9
Q ss_pred CCEEEEECCCCchHHHHHhh--------CCCccccCChhhhhHHHHHHHHHc--CCCeEEEEecCCCCCCCCCCceEEEe
Q 012961 216 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHC 285 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~--------~~v~~vdis~~dis~~~~~~A~~r--g~~~~~~~~d~~~lp~~d~sFDlVv~ 285 (452)
...|||||||+|.++...++ ..|.+++-++......+ +..+.. +..+.++.+|.+++..+ ...|+||+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 45899999999998765543 25667776665442222 221223 35689999999999877 48999997
Q ss_pred cccccccc--ccHHHHHHHHHHhcCCCcEEE
Q 012961 286 SRCRIDWL--QRDGILLLELDRLLRPGGYFV 314 (452)
Q Consensus 286 s~~~l~~~--~d~~~~L~ei~RvLkPGG~lv 314 (452)
-. .=.+. +-....|....|.|||||.++
T Consensus 265 El-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 EL-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ec-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 32 11111 222447888999999999887
No 181
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.81 E-value=4.3e-05 Score=75.58 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=47.9
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg--~~~~~~~~d~~~lp~~d~sFDlVv~s 286 (452)
+..+|||||||+|.++..|++. .++++|+++.+ ++.++++. .++.+..+|+..+++++-.+|.|+++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~-----~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDL-----APILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHH-----HHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 3458999999999999999874 45666655544 44444432 46889999998888764335888865
No 182
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.80 E-value=6.2e-05 Score=73.85 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHc---CCCeEEEEe
Q 012961 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVL 268 (452)
Q Consensus 194 ~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~r---g~~~~~~~~ 268 (452)
...+.+.+.+.. .+..+|||||||+|.++..|++. .++++|++... ++.++++ ..++.+..+
T Consensus 16 ~~~~~iv~~~~~--------~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~-----~~~l~~~~~~~~~v~ii~~ 82 (258)
T PRK14896 16 RVVDRIVEYAED--------TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRL-----AEFLRDDEIAAGNVEIIEG 82 (258)
T ss_pred HHHHHHHHhcCC--------CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHH-----HHHHHHHhccCCCEEEEEe
Confidence 445555555542 23458999999999999999974 45666655544 4444433 245888999
Q ss_pred cCCCCCCCCCCceEEEecc
Q 012961 269 GTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 269 d~~~lp~~d~sFDlVv~s~ 287 (452)
|+..++++ .||.|+++.
T Consensus 83 D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 83 DALKVDLP--EFNKVVSNL 99 (258)
T ss_pred ccccCCch--hceEEEEcC
Confidence 99888775 489999764
No 183
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.71 E-value=0.00032 Score=65.10 Aligned_cols=119 Identities=19% Similarity=0.228 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCchHHHHHhh--CCCc-----------cccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCCCCCCC
Q 012961 215 NIRNVLDVGCGVASFGAYLLS--HDII-----------AMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRS 279 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~--~~v~-----------~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp~~d~s 279 (452)
+...|||--||+|++....+. ..+. |.|+++..++.+. +.+...+. .+.+...|+.++++.+++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~-~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR-ENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH-HHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH-HHHHhcccCCceEEEecchhhcccccCC
Confidence 345899999999999866543 3333 7777776665444 33333343 367888899999977789
Q ss_pred ceEEEecccccccc---c---c----HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 280 FELAHCSRCRIDWL---Q---R----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 280 FDlVv~s~~~l~~~---~---d----~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
+|.|++.- +|- . + ...+++++.++|++...+++... ..+++.++..+|+.....
T Consensus 107 ~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~-------------~~~~~~~~~~~~~~~~~~ 170 (179)
T PF01170_consen 107 VDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN-------------RELEKALGLKGWRKRKLY 170 (179)
T ss_dssp SCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC-------------CCHHHHHTSTTSEEEEEE
T ss_pred CCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-------------HHHHHHhcchhhceEEEE
Confidence 99999852 221 1 1 13478999999999444444431 236777787788877655
Q ss_pred e
Q 012961 350 D 350 (452)
Q Consensus 350 ~ 350 (452)
.
T Consensus 171 ~ 171 (179)
T PF01170_consen 171 N 171 (179)
T ss_dssp E
T ss_pred E
Confidence 4
No 184
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.0001 Score=68.29 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchHHHHHh--h-CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La--~-~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~ 291 (452)
.+++|+|+|||||.++...+ . ..|+++|+++..+. ...+.+.+.+.++.+.+.|..++. ..||.++.+--.=-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~e-i~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALE-IARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHH-HHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 44589999999998766554 3 57899999886653 334555555667999999998875 56898887531111
Q ss_pred cc--ccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 292 WL--QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 292 ~~--~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
+. .| ..+|....++- .++.+.... ...+-++..++..|+.+....
T Consensus 121 ~~rhaD-r~Fl~~Ale~s----~vVYsiH~a--------~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 121 QRRHAD-RPFLLKALEIS----DVVYSIHKA--------GSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccccCC-HHHHHHHHHhh----heEEEeecc--------ccHHHHHHHHHhcCCeEEEEE
Confidence 11 22 33555555443 233322111 123457788899998876554
No 185
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.63 E-value=0.00016 Score=68.32 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=81.3
Q ss_pred cccceeecCceeecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhh----CCCccccC
Q 012961 168 DQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSL 243 (452)
Q Consensus 168 ~~~W~~~~g~~~~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~----~~v~~vdi 243 (452)
..-..++.|-.+.++-....|.++...-...+.+.+. +..+|||+-||.|.|+..++. ..|+++|+
T Consensus 64 ~~t~~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~----------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~ 133 (200)
T PF02475_consen 64 TETIHKENGIRFKVDLSKVYFSPRLSTERRRIANLVK----------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDL 133 (200)
T ss_dssp SEEEEEETTEEEEEETTTS---GGGHHHHHHHHTC------------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES
T ss_pred eEEEEEeCCEEEEEccceEEEccccHHHHHHHHhcCC----------cceEEEEccCCccHHHHHHhhhcCccEEEEecC
Confidence 3445566677777777777888776666666665433 345899999999999999986 25888888
Q ss_pred ChhhhhHHHHHHHHHcCCC--eEEEEecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEE
Q 012961 244 APNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314 (452)
Q Consensus 244 s~~dis~~~~~~A~~rg~~--~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lv 314 (452)
.+..+.-.. +.++..+.. +....+|...+.- .+.||.|++.. ......+|..+.+++++||.+-
T Consensus 134 Np~a~~~L~-~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 134 NPDAVEYLK-ENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -HHHHHHHH-HHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred CHHHHHHHH-HHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 887664443 344433333 5677888877754 68899998653 2222358899999999999874
No 186
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.62 E-value=7.7e-05 Score=72.95 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=53.2
Q ss_pred EEEecCCCC-CCCC-----CCceEEEeccccccccccH---HHHHHHHHHhcCCCcEEEEEeCCC---CCCChhh----H
Q 012961 265 LGVLGTKRL-PYPS-----RSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEA---YAHDPEN----R 328 (452)
Q Consensus 265 ~~~~d~~~l-p~~d-----~sFDlVv~s~~~l~~~~d~---~~~L~ei~RvLkPGG~lvi~~p~~---~~~~~~~----~ 328 (452)
++..|.... |+.. ..||+|++++|+-.-..+. ..+++++.++|||||.|++..--. |...... .
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~ 217 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLP 217 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccccc
Confidence 555675443 3332 3599999999744434444 558999999999999999876321 1111100 0
Q ss_pred HHHHHHHHHHHhCCCEEEEEE
Q 012961 329 RIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
-.-+.+++.++++||.++..+
T Consensus 218 l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 218 LNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp B-HHHHHHHHHHTTEEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEecc
Confidence 122578899999999988776
No 187
>PLN02823 spermine synthase
Probab=97.62 E-value=0.00043 Score=70.54 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHc---------CCCeEEEEecCCCC-CCCCCCc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSRSF 280 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~r---------g~~~~~~~~d~~~l-p~~d~sF 280 (452)
.+++||.||+|.|..+..+++. .++.+|+ ++..++.|++. ..++.++..|.... .-..++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEi-----D~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDI-----DQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEEC-----CHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 4568999999999999988763 3444544 45555555543 24577888885443 3345789
Q ss_pred eEEEecccccccc---c---cHHHHHH-HHHHhcCCCcEEEEEe
Q 012961 281 ELAHCSRCRIDWL---Q---RDGILLL-ELDRLLRPGGYFVYSS 317 (452)
Q Consensus 281 DlVv~s~~~l~~~---~---d~~~~L~-ei~RvLkPGG~lvi~~ 317 (452)
|+|++-. .-... . -...+++ .+.+.|+|||.+++..
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999652 11110 0 0135777 8999999999998754
No 188
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.61 E-value=0.00035 Score=68.24 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=46.5
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHc---CCCeEEEEecCCCCCCCCCCce---EEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFE---LAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~r---g~~~~~~~~d~~~lp~~d~sFD---lVv~s 286 (452)
+..+|||||||+|.++..|++. .++++|+++.. ++.++++ ..++.+..+|+..++++ .|| +|+++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~-----~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRL-----AEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHH-----HHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 3458999999999999999874 45666665544 4444333 34678888998888765 466 77754
Q ss_pred c
Q 012961 287 R 287 (452)
Q Consensus 287 ~ 287 (452)
.
T Consensus 102 l 102 (253)
T TIGR00755 102 L 102 (253)
T ss_pred C
Confidence 3
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.61 E-value=0.0001 Score=71.90 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=63.5
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcC--CCeEEEEecCCCC-CC------CCCCce
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PY------PSRSFE 281 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg--~~~~~~~~d~~~l-p~------~d~sFD 281 (452)
+++|||||+++|+.+.+++.. .++++|..+.....+. +.-.+.| ..+.+..+++.+. +- ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar-~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL-PVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 458999999999999988752 5677777654433332 2223334 3577777775432 21 126899
Q ss_pred EEEeccccccccccHHHHHHHHHHhcCCCcEEEEE
Q 012961 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (452)
Q Consensus 282 lVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~ 316 (452)
+|+.-. .-.....++..+.++|+|||.+++-
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 998543 2233456788889999999998863
No 190
>PRK04148 hypothetical protein; Provisional
Probab=97.57 E-value=0.00022 Score=62.95 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=58.8
Q ss_pred CCCEEEEECCCCch-HHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCC-CCCceEEEeccccccc
Q 012961 215 NIRNVLDVGCGVAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDW 292 (452)
Q Consensus 215 ~~~~VLDIGCG~G~-~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~-d~sFDlVv~s~~~l~~ 292 (452)
+..+|||||||.|. ++..|++. +.++.+.|+++..++.+++.+. .+.+.|..+-.+. -+.+|+|.+.+..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirpp--- 87 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRPP--- 87 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCCC---
Confidence 34689999999996 88888874 4555666677777788877754 5566675544322 2569999987742
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEE
Q 012961 293 LQRDGILLLELDRLLRPGGYFVYS 316 (452)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvi~ 316 (452)
++....+.++.+-+ |.-++|.
T Consensus 88 -~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 88 -RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred -HHHHHHHHHHHHHc--CCCEEEE
Confidence 33344555555544 3345543
No 191
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.56 E-value=0.00023 Score=71.23 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=48.9
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHc-CCCeEEEEecCCCCCCCCCCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~r-g~~~~~~~~d~~~lp~~d~sFDlVv~s 286 (452)
+..+|||||||+|.++..|++. .++++|+++..+......++... ..++.+..+|+...+++ .||.|+++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaN 108 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVAN 108 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEec
Confidence 3458999999999999999873 57777777666544442222211 24588889998776654 68999865
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.55 E-value=0.00097 Score=62.22 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=74.4
Q ss_pred EEEEECCCCchHHHHHh----hCCCccccCChhhhhHHHHHHHHHcCCC-eEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 218 NVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La----~~~v~~vdis~~dis~~~~~~A~~rg~~-~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
+++|||+|-|.-+..|+ +..++-+|-...-++- ....+++-+.+ +.+....+++ +....+||+|++-. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~F-L~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA-v--- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAF-LKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA-V--- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHH-HHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES-S---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHH-HHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh-h---
Confidence 79999999997776665 2345556554433211 11233444555 7777777777 44457899999543 2
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
.....++.-+...|++||.+++.-- +......++.....+..+.+......
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~KG------~~~~~El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYKG------PDAEEELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEES------S--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEcC------CChHHHHHHHHhHHHHhCCEEeeecc
Confidence 3446789999999999999987431 12223345566677777777665543
No 193
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0033 Score=57.97 Aligned_cols=122 Identities=16% Similarity=0.237 Sum_probs=79.6
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccc-
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR- 289 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~- 289 (452)
+.-+||||||+|..+..|++. -..+.|+.+... .+..+.|+.++..+..+..|...- +..++.|+++.+.-.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 457999999999999999874 234677777654 444566776676777777774332 122788888764211
Q ss_pred -------------cccc--cc----HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEE
Q 012961 290 -------------IDWL--QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (452)
Q Consensus 290 -------------l~~~--~d----~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 347 (452)
..|. .+ .++++..+..+|.|.|.+++..-... . -+++..+++..||....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--~------p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--K------PKEILKILEKKGYGVRI 190 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--C------HHHHHHHHhhcccceeE
Confidence 1121 11 13477788889999999998763321 1 24566788888987654
No 194
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.40 E-value=0.00034 Score=72.53 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=65.2
Q ss_pred CEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCceEEEecccccc
Q 012961 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~ 291 (452)
.+|||++||+|.++..++.. .|+++|+++..+.....+ ++..+. ...+...|+..+....+.||+|+..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N-~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKN-LELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 47999999999999998752 467777776655444322 222333 34577777655422135799998542
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+ ..+..++....+.+++||++.++..
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2 3345688887888999999999864
No 195
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.0027 Score=63.11 Aligned_cols=73 Identities=12% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChh-------hH-HHHHHHHHHHHhCCCEEEEEE
Q 012961 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-------NR-RIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~-------~~-~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
++||+|+..+ .+.-..+.-.++..|..+|+|||+++-..|-.|....+ .. -..+++..+++..||++++.+
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 3699998765 45555566679999999999999999888866543321 11 245799999999999999887
Q ss_pred ec
Q 012961 350 DQ 351 (452)
Q Consensus 350 ~~ 351 (452)
..
T Consensus 337 ~I 338 (369)
T KOG2798|consen 337 GI 338 (369)
T ss_pred ee
Confidence 43
No 196
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.39 E-value=0.0024 Score=63.36 Aligned_cols=121 Identities=18% Similarity=0.109 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHc---CCCeEE--EEec--CCCCCCCCCCceE
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER---GIPSTL--GVLG--TKRLPYPSRSFEL 282 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~r---g~~~~~--~~~d--~~~lp~~d~sFDl 282 (452)
.+++|||+|||.|..+-.+.+ ..++.+|. ++.+.+.++.- ...... .... ....++. ..|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~-----s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDR-----SPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecC-----CHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcE
Confidence 566899999999975554443 23445544 44444444322 111110 0011 1122332 3499
Q ss_pred EEecccccccccc-HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEE
Q 012961 283 AHCSRCRIDWLQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (452)
Q Consensus 283 Vv~s~~~l~~~~d-~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 348 (452)
|++++.+.+.... ...+++.+.+.+.+ +|+|+.|+.. ...+...++.+.+.+.|+.++.-
T Consensus 106 vi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~----~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 106 VIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP----AGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred EEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh----HHHHHHHHHHHHHhhCCCceECC
Confidence 9999965554331 13366666666655 8888887653 34445567788888888887754
No 197
>PRK00536 speE spermidine synthase; Provisional
Probab=97.35 E-value=0.0015 Score=64.34 Aligned_cols=114 Identities=13% Similarity=0.122 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHc---------CCCeEEEEecCCCCCCCCCCceE
Q 012961 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFEL 282 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~r---------g~~~~~~~~d~~~lp~~d~sFDl 282 (452)
+++++||=||.|.|..++.++++ +|+-+|++ +..++.+++- .+++.+.. ...+ -..++||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID-----~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDV 142 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD-----EKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDL 142 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECC-----HHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCE
Confidence 35679999999999999999986 35555554 4445555542 33455543 1111 12368999
Q ss_pred EEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEE
Q 012961 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (452)
Q Consensus 283 Vv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 346 (452)
|+.-. + ....+.+.+.|.|+|||.++......+.. ...+..+.+.+++ .|..+
T Consensus 143 IIvDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~----~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 143 IICLQ-E-----PDIHKIDGLKRMLKEDGVFISVAKHPLLE----HVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred EEEcC-C-----CChHHHHHHHHhcCCCcEEEECCCCcccC----HHHHHHHHHHHHh-hCCce
Confidence 99542 1 23568899999999999999976554432 1223455555555 57644
No 198
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00011 Score=66.36 Aligned_cols=74 Identities=18% Similarity=0.397 Sum_probs=56.1
Q ss_pred CCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec-eeEe
Q 012961 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ-TVIW 355 (452)
Q Consensus 277 d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~-~~iw 355 (452)
..+||+|+|+.|++ +.+..+.+++.|.+.|+|.|..++..|..- ...+.+.+.+...||.+...++. ..+|
T Consensus 101 q~tFDiIlaADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg-------~sL~kF~de~~~~gf~v~l~enyde~iw 172 (201)
T KOG3201|consen 101 QHTFDIILAADCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRG-------QSLQKFLDEVGTVGFTVCLEENYDEAIW 172 (201)
T ss_pred hCcccEEEeccchh-HHHHHHHHHHHHHHHhCcccceeEecCccc-------chHHHHHHHHHhceeEEEecccHhHHHH
Confidence 35899999999854 445557799999999999999998877432 23567788889999998776653 4566
Q ss_pred ecc
Q 012961 356 AKP 358 (452)
Q Consensus 356 ~kp 358 (452)
++-
T Consensus 173 qrh 175 (201)
T KOG3201|consen 173 QRH 175 (201)
T ss_pred HHH
Confidence 554
No 199
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.33 E-value=0.0032 Score=58.93 Aligned_cols=99 Identities=13% Similarity=-0.027 Sum_probs=60.0
Q ss_pred CCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCC-CC-C-CCC-CceEEEec
Q 012961 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y-PSR-SFELAHCS 286 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~-lp-~-~d~-sFDlVv~s 286 (452)
..+|||++||+|.++..++.+ .|+++|.+...+.... +.+...+. ++.+...|+.. +. + ... .||+|+.-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 348999999999999999874 5777777765554433 22333333 46777788633 22 1 122 47887753
Q ss_pred ccccccc-ccHHHHHHHHH--HhcCCCcEEEEEeC
Q 012961 287 RCRIDWL-QRDGILLLELD--RLLRPGGYFVYSSP 318 (452)
Q Consensus 287 ~~~l~~~-~d~~~~L~ei~--RvLkPGG~lvi~~p 318 (452)
- .|. .....++..+. .+|+++|.+++..+
T Consensus 129 P---Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 P---PFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred c---CCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2 121 12233444443 47899999888654
No 200
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0017 Score=64.62 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHc---------CCCeEEEEecCCCC-CCCCCCc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSRSF 280 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~r---------g~~~~~~~~d~~~l-p~~d~sF 280 (452)
++++||-||-|.|..++.+++. +++.+|+ .++.++.+++. ..++.++..|...+ .-..++|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEI-----D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~f 150 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEI-----DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKF 150 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEc-----CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcC
Confidence 3469999999999999999874 4555554 45555666654 24567777775443 2122489
Q ss_pred eEEEeccccccccc----cHHHHHHHHHHhcCCCcEEEEEeCCCCCCC
Q 012961 281 ELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHD 324 (452)
Q Consensus 281 DlVv~s~~~l~~~~----d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~ 324 (452)
|+|++-. .-.--+ ....+++.+.|.|+++|.++...-..+...
T Consensus 151 DvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 151 DVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 9999643 122001 015699999999999999999754444333
No 201
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.32 E-value=0.0013 Score=66.39 Aligned_cols=97 Identities=19% Similarity=0.147 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
.....+|+|.|.|..+..+... .|.++++....+.+++...+ ..+..+.+|...- .|. -|+|++-.++.||
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~-~P~--~daI~mkWiLhdw 249 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD-TPK--GDAIWMKWILHDW 249 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceeccccccc-CCC--cCeEEEEeecccC
Confidence 3568999999999999998873 45566655444433332222 3355555563222 332 4699999976666
Q ss_pred ccc-HHHHHHHHHHhcCCCcEEEEEeC
Q 012961 293 LQR-DGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 293 ~~d-~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
.++ ...+|++++..|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 543 37799999999999999999775
No 202
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.32 E-value=0.0011 Score=68.30 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=72.0
Q ss_pred CEEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCC-C-CC--------------C
Q 012961 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YP--------------S 277 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~l-p-~~--------------d 277 (452)
.+|||++||+|.++..|+. ..|+++|+++.++..+. +.+...+. ++.+..+|+.++ + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 3699999999999998886 36888888877765544 33433444 577888886542 1 10 1
Q ss_pred CCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
..||+|+.--- ...-...+++.+. +|++.++++..+. . .-.++..+. + ||++...+..
T Consensus 287 ~~~D~v~lDPP---R~G~~~~~l~~l~---~~~~ivyvSC~p~------t--larDl~~L~-~-gY~l~~v~~~ 344 (362)
T PRK05031 287 YNFSTIFVDPP---RAGLDDETLKLVQ---AYERILYISCNPE------T--LCENLETLS-Q-THKVERFALF 344 (362)
T ss_pred CCCCEEEECCC---CCCCcHHHHHHHH---ccCCEEEEEeCHH------H--HHHHHHHHc-C-CcEEEEEEEc
Confidence 25899985321 1111133444444 4788888876331 1 123455554 3 8988776643
No 203
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0016 Score=68.35 Aligned_cols=98 Identities=23% Similarity=0.404 Sum_probs=73.8
Q ss_pred EEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccc-
Q 012961 218 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 293 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~- 293 (452)
++|-+|||.-.+...+.+ +.|+.+|++...+....+..+++ .....+...|...+.|++++||+|+--.. ++.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-~~~~~~~~~d~~~l~fedESFdiVIdkGt-lDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-RPEMQMVEMDMDQLVFEDESFDIVIDKGT-LDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-CcceEEEEecchhccCCCcceeEEEecCc-ccccc
Confidence 799999999999888876 46778888877776555555422 23467888999999999999999997663 4332
Q ss_pred ccH---------HHHHHHHHHhcCCCcEEEEEe
Q 012961 294 QRD---------GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 294 ~d~---------~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.+. ...+.++.|+|++||+++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 222 236789999999999977544
No 204
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.26 E-value=0.0014 Score=69.68 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=65.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCC-eEEEEecCCCCC-CCCCCceEEE---
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP-YPSRSFELAH--- 284 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~-~~~~~~d~~~lp-~~d~sFDlVv--- 284 (452)
++.+|||++||.|.=+.++++. .+++.|++..-+.... +.+...|.. +.+...|...+. ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 4458999999999888887752 4566666554432222 333333544 566667766552 2235799999
Q ss_pred -eccc-c--------cccccc--------HHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 285 -CSRC-R--------IDWLQR--------DGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 285 -~s~~-~--------l~~~~d--------~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
|+.. + ..|..+ ...+|..+.+.|||||+++.++=.
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 5521 1 111111 144899999999999999987643
No 205
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.003 Score=64.26 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=103.3
Q ss_pred eeecCceeecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC---CCccccCChhhh
Q 012961 172 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDV 248 (452)
Q Consensus 172 ~~~~g~~~~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~di 248 (452)
.+..|-.+.++-.-.+|.++-..-...++++.. .+.+|||+=||.|.|+..++.. .|.++|+.+..+
T Consensus 155 hrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~----------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~ 224 (341)
T COG2520 155 HRENGCRFKVDVAKVYFSPRLSTERARVAELVK----------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV 224 (341)
T ss_pred EecCCEEEEEchHHeEECCCchHHHHHHHhhhc----------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH
Confidence 334444555555556777776666666666554 2458999999999999999863 378888888766
Q ss_pred hHHHHHHHHHcCCC-eEEEEecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhh
Q 012961 249 HENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN 327 (452)
Q Consensus 249 s~~~~~~A~~rg~~-~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~ 327 (452)
.-...+...++-.. +..+.+|...+...-+.||-|++.. ......++....+.|++||.+-+..........
T Consensus 225 ~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~-- 297 (341)
T COG2520 225 EYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIE-- 297 (341)
T ss_pred HHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEeccchhhcc--
Confidence 44443333332222 6678899888876557899998653 334456889999999999999886532211110
Q ss_pred HHHHHHHHHHHHhCCCE
Q 012961 328 RRIWNAMYDLLKSMCWK 344 (452)
Q Consensus 328 ~~~~~~l~~ll~~~Gf~ 344 (452)
......+.....+.|++
T Consensus 298 ~~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 298 ERPEKRIKSAARKGGYK 314 (341)
T ss_pred cchHHHHHHHHhhccCc
Confidence 01346778888888764
No 206
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.16 E-value=0.002 Score=66.22 Aligned_cols=116 Identities=12% Similarity=0.078 Sum_probs=69.3
Q ss_pred EEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCC--------C---C-----CC
Q 012961 218 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--------Y---P-----SR 278 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp--------~---~-----d~ 278 (452)
+|||+|||+|.++..|++ ..|+++|+++.++..+. +.+...+. ++.+...|+.++- + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 599999999999999987 36788888777765554 33333444 5778888865421 1 0 11
Q ss_pred CceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 279 sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
.||+|+.--- -..-...+++.+ ++|++.++++..+. ..-.++..+. .+|++...+.
T Consensus 279 ~~d~v~lDPP---R~G~~~~~l~~l---~~~~~ivYvsC~p~--------tlaRDl~~L~--~~Y~l~~v~~ 334 (353)
T TIGR02143 279 NCSTIFVDPP---RAGLDPDTCKLV---QAYERILYISCNPE--------TLKANLEQLS--ETHRVERFAL 334 (353)
T ss_pred CCCEEEECCC---CCCCcHHHHHHH---HcCCcEEEEEcCHH--------HHHHHHHHHh--cCcEEEEEEE
Confidence 3798885321 001113344444 34788888876332 1123555554 2488776664
No 207
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.14 E-value=0.0031 Score=65.38 Aligned_cols=129 Identities=15% Similarity=0.041 Sum_probs=81.7
Q ss_pred CCEEEEECCCCchHHHHHhh--C-CCccccCChhhhhHHHHHHHHHc--CCCeEEEEecCCCC-C---CCCCCceEEEec
Q 012961 216 IRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRL-P---YPSRSFELAHCS 286 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~--~-~v~~vdis~~dis~~~~~~A~~r--g~~~~~~~~d~~~l-p---~~d~sFDlVv~s 286 (452)
+++|||+=|=||.++.+.+. + .|+.||++...+.-+..+..... ..+..++++|+..+ . -...+||+|+.-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 45899999999999998885 2 67888777666655553333322 12367888885332 2 223589999973
Q ss_pred cc--------cccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEE
Q 012961 287 RC--------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (452)
Q Consensus 287 ~~--------~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 347 (452)
-- ...-..+...++..+.++|+|||.+++++......... ..+.+.+.+...+.....
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~---f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDL---FLEIIARAAAAAGRRAQE 363 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHH---HHHHHHHHHHhcCCcEEE
Confidence 21 11112344668999999999999999987544322221 224455556666554443
No 208
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.10 E-value=0.0027 Score=60.68 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=65.6
Q ss_pred CCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCC-CC-----CCCCCceE
Q 012961 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 282 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~-lp-----~~d~sFDl 282 (452)
++++||||.=+|+.+..++. ..|+++|+........ .+..+..|. .+.+.++.+.+ |+ ...++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 35899999888877666653 3688888877655444 233344443 36666665322 21 34689999
Q ss_pred EEeccccccccccHHHHHHHHHHhcCCCcEEEEE
Q 012961 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (452)
Q Consensus 283 Vv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~ 316 (452)
|+. -+|-.+.-.++.++.++||+||.+++-
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 983 445555567899999999999999973
No 209
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.09 E-value=0.0043 Score=62.78 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=60.5
Q ss_pred CEEEEECCCCchHHHHHhhC--------CCccccCChhhhhHHHHHHHHHcCCCeEE--EEecCCC----CCC--CCCCc
Q 012961 217 RNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKR----LPY--PSRSF 280 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~~~~~~A~~rg~~~~~--~~~d~~~----lp~--~d~sF 280 (452)
..|+|+|||.|.=+..|++. ..+++||+...+..+..+......+.+.+ +.+|..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999866665541 23445555444433333332122233443 5555432 221 12346
Q ss_pred eEEEeccccccccccH--HHHHHHHHH-hcCCCcEEEEEe
Q 012961 281 ELAHCSRCRIDWLQRD--GILLLELDR-LLRPGGYFVYSS 317 (452)
Q Consensus 281 DlVv~s~~~l~~~~d~--~~~L~ei~R-vLkPGG~lvi~~ 317 (452)
.+|+...+.+.-.+.. ..+|+++.+ .|+|||.|+|..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 7777766566655444 458999999 999999999865
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.07 E-value=0.0094 Score=56.90 Aligned_cols=122 Identities=13% Similarity=0.146 Sum_probs=77.2
Q ss_pred CCEEEEECCCCchHHHHHh----hCCCccccCChhhhhHHHH-HHHHHcCCC-eEEEEecCCCCCCCCCC-ceEEEeccc
Q 012961 216 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQI-QFALERGIP-STLGVLGTKRLPYPSRS-FELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La----~~~v~~vdis~~dis~~~~-~~A~~rg~~-~~~~~~d~~~lp~~d~s-FDlVv~s~~ 288 (452)
..+++|||+|.|.-+..|+ +..++-+|-...-+ +.+ +.+.+-+.+ +.++..-++++.-. .. ||+|+|..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRA- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRA- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeeh-
Confidence 4689999999998777766 22333333322211 112 223344665 78888778877532 23 99998543
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
+.+...++.-+...|++||.++.- ........+.+.+......++.+......
T Consensus 144 ----va~L~~l~e~~~pllk~~g~~~~~------k~~~~~~e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 144 ----VASLNVLLELCLPLLKVGGGFLAY------KGLAGKDELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred ----ccchHHHHHHHHHhcccCCcchhh------hHHhhhhhHHHHHHHHHhhcCcEEEEEEe
Confidence 234466788888999999987641 11223344677888888889988776644
No 211
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.06 E-value=0.003 Score=61.60 Aligned_cols=122 Identities=15% Similarity=0.220 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHc---------CCCeEEEEecCCCC-CCCCC-C
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSR-S 279 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~r---------g~~~~~~~~d~~~l-p~~d~-s 279 (452)
++++||=||-|.|..+..+++. .|+.+|+++ ..++.|++- ..++.++..|...+ .-..+ +
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~-----~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP-----EVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H-----HHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh-----HHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 5679999999999999999874 355555544 444444432 35688888885432 11223 8
Q ss_pred ceEEEecccccccccc----HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEE
Q 012961 280 FELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (452)
Q Consensus 280 FDlVv~s~~~l~~~~d----~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 346 (452)
||+|+.-.. -..... -..+++.+.++|+|||.+++.....+. .......+...+++....+.
T Consensus 151 yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~----~~~~~~~i~~tl~~~F~~v~ 216 (246)
T PF01564_consen 151 YDVIIVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL----HPELFKSILKTLRSVFPQVK 216 (246)
T ss_dssp EEEEEEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT----THHHHHHHHHHHHTTSSEEE
T ss_pred ccEEEEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc----chHHHHHHHHHHHHhCCceE
Confidence 999996331 111111 156999999999999999987633321 12345667777888777443
No 212
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.00047 Score=61.81 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=55.5
Q ss_pred cCCCCCCCCCCceEEEecccccccccc--HHHHHHHHHHhcCCCcEEEEEeCCCCC------C-------------Chhh
Q 012961 269 GTKRLPYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYA------H-------------DPEN 327 (452)
Q Consensus 269 d~~~lp~~d~sFDlVv~s~~~l~~~~d--~~~~L~ei~RvLkPGG~lvi~~p~~~~------~-------------~~~~ 327 (452)
.....+|.+++.|+|++.. +++|+.. ...++++++|+|||||+|-++.|.... . ....
T Consensus 37 As~e~~F~dns~d~iyaeH-vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~ 115 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEH-VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRI 115 (185)
T ss_pred hhhhccCCCcchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHH
Confidence 3455678999999999888 5666533 345899999999999999999885311 1 1112
Q ss_pred HHHHHHHHHHHHhCCCEE
Q 012961 328 RRIWNAMYDLLKSMCWKI 345 (452)
Q Consensus 328 ~~~~~~l~~ll~~~Gf~~ 345 (452)
.+.++.|.+.+.++||.+
T Consensus 116 v~t~r~m~n~~m~~~~~~ 133 (185)
T COG4627 116 VKTMRMMFNGFMDAGFVV 133 (185)
T ss_pred HHHHHHHHHHHHhhhhee
Confidence 235678888889998854
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.03 E-value=0.0018 Score=64.99 Aligned_cols=120 Identities=16% Similarity=0.237 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhh-----------CCCccccCChhhhhHHHHHHHHHc--
Q 012961 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------HDIIAMSLAPNDVHENQIQFALER-- 259 (452)
Q Consensus 193 ~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~-----------~~v~~vdis~~dis~~~~~~A~~r-- 259 (452)
....+.+.+++.. ....+|||-.||+|.|...+.+ ..+.|+|+.+....-+.+......
T Consensus 32 ~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 3445556666642 3445799999999999877754 245666666555444443333221
Q ss_pred CCCeEEEEecCCCCCCC--CCCceEEEeccc--ccccc------------------ccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 260 GIPSTLGVLGTKRLPYP--SRSFELAHCSRC--RIDWL------------------QRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 260 g~~~~~~~~d~~~lp~~--d~sFDlVv~s~~--~l~~~------------------~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.....+...|....+.. ...||+|+++-- ...|. ...-.++..+.+.|++||++++..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 11234666675444332 468999998521 11000 011248899999999999999988
Q ss_pred CCC
Q 012961 318 PEA 320 (452)
Q Consensus 318 p~~ 320 (452)
|..
T Consensus 184 p~~ 186 (311)
T PF02384_consen 184 PNG 186 (311)
T ss_dssp EHH
T ss_pred cch
Confidence 764
No 214
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.99 E-value=0.01 Score=56.72 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=93.1
Q ss_pred cccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCCCe
Q 012961 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPS 263 (452)
Q Consensus 189 ~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~~~ 263 (452)
.+...+....+..-+.. ..+ .++.+||-+|+.+|....++++ ..|.++++++... ...+..|++| .++
T Consensus 52 ~P~RSKLaAai~~Gl~~--~~i---k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R-~NI 124 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLEN--IPI---KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKR-PNI 124 (229)
T ss_dssp -TTT-HHHHHHHTT-S----S-----TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHS-TTE
T ss_pred CchhhHHHHHHHcCccc--cCC---CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccC-Cce
Confidence 44455555544433321 122 2345899999999998888876 3678899998755 3445777776 455
Q ss_pred EEEEecCCCC----CCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC-CCCChhhHHHHHHHHHHH
Q 012961 264 TLGVLGTKRL----PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLL 338 (452)
Q Consensus 264 ~~~~~d~~~l----p~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~-~~~~~~~~~~~~~l~~ll 338 (452)
.-+..|+..- .+- +.+|+|++-- ......+.++.++..-||+||.++++.... ..........|.+-.+.+
T Consensus 125 iPIl~DAr~P~~Y~~lv-~~VDvI~~DV---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L 200 (229)
T PF01269_consen 125 IPILEDARHPEKYRMLV-EMVDVIFQDV---AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKL 200 (229)
T ss_dssp EEEES-TTSGGGGTTTS---EEEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHH
T ss_pred eeeeccCCChHHhhccc-ccccEEEecC---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHH
Confidence 5566675431 122 4799999653 233445678999999999999999876421 111122334577777888
Q ss_pred HhCCCEEEEEEe
Q 012961 339 KSMCWKIVSKKD 350 (452)
Q Consensus 339 ~~~Gf~~v~~~~ 350 (452)
++.||+.++.-.
T Consensus 201 ~~~~~~~~e~i~ 212 (229)
T PF01269_consen 201 KEEGFKPLEQIT 212 (229)
T ss_dssp HCTTCEEEEEEE
T ss_pred HHcCCChheEec
Confidence 889999887654
No 215
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.97 E-value=0.0015 Score=65.22 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=58.4
Q ss_pred CCCEEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHHHc----C--CCeEEEEecCCCCCCCCCCceEEEe
Q 012961 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHC 285 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~~r----g--~~~~~~~~d~~~lp~~d~sFDlVv~ 285 (452)
..+.|||+|||+|.++...++ +.|.+++.+. |.+.|++. . .++.++.+..+++.+| +..|+|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~------MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE------MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH------HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEe
Confidence 456899999999998877765 3567775443 23444432 2 2355666668888887 67999996
Q ss_pred ccccccccccHHH---HHHHHHHhcCCCcEEE
Q 012961 286 SRCRIDWLQRDGI---LLLELDRLLRPGGYFV 314 (452)
Q Consensus 286 s~~~l~~~~d~~~---~L~ei~RvLkPGG~lv 314 (452)
-- +.++---++ ..-...|.|+|.|.++
T Consensus 250 EP--MG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 250 EP--MGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cc--chhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 43 222211122 2234569999999988
No 216
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.011 Score=57.86 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHc--CCCeEEEEe
Q 012961 196 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER--GIPSTLGVL 268 (452)
Q Consensus 196 ~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~r--g~~~~~~~~ 268 (452)
+..|..+++. .++.+|||-|.|+|+++.+++.. .+...|+...-...+ ++.-++. +.++.+.+.
T Consensus 94 ia~I~~~L~i--------~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka-~eeFr~hgi~~~vt~~hr 164 (314)
T KOG2915|consen 94 IAMILSMLEI--------RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKA-LEEFREHGIGDNVTVTHR 164 (314)
T ss_pred HHHHHHHhcC--------CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHH-HHHHHHhCCCcceEEEEe
Confidence 4456667764 24458999999999999999863 455666533222222 2222233 456788888
Q ss_pred cCCCCCCC--CCCceEEEeccccccccccHHHHHHHHHHhcCCCc-EEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEE
Q 012961 269 GTKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (452)
Q Consensus 269 d~~~lp~~--d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG-~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 345 (452)
|.....|. +..+|.|+.- ++.+..++--++.+||.+| +++--.|-. +..+.--++++++||..
T Consensus 165 DVc~~GF~~ks~~aDaVFLD------lPaPw~AiPha~~~lk~~g~r~csFSPCI--------EQvqrtce~l~~~gf~~ 230 (314)
T KOG2915|consen 165 DVCGSGFLIKSLKADAVFLD------LPAPWEAIPHAAKILKDEGGRLCSFSPCI--------EQVQRTCEALRSLGFIE 230 (314)
T ss_pred ecccCCccccccccceEEEc------CCChhhhhhhhHHHhhhcCceEEeccHHH--------HHHHHHHHHHHhCCCce
Confidence 87766554 5779999732 2445567777778999877 555433322 22335567788999976
Q ss_pred EEE
Q 012961 346 VSK 348 (452)
Q Consensus 346 v~~ 348 (452)
+..
T Consensus 231 i~~ 233 (314)
T KOG2915|consen 231 IET 233 (314)
T ss_pred EEE
Confidence 654
No 217
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.01 Score=62.62 Aligned_cols=122 Identities=19% Similarity=0.196 Sum_probs=79.7
Q ss_pred CCCEEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCC---CCCceEEEecccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCR 289 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~---d~sFDlVv~s~~~ 289 (452)
+..++||+=||.|.|+..|++ ..|+|+++++..+..+..+.+.....++.|..++++++... ...||.|+..-
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP-- 370 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP-- 370 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC--
Confidence 345899999999999999996 48999999998887766444443344588888888777533 35789998421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
.-..-...+++.+.+ ++|-.++++|-.+. ++..=...+.+.|+++.+.+
T Consensus 371 -PR~G~~~~~lk~l~~-~~p~~IvYVSCNP~---------TlaRDl~~L~~~gy~i~~v~ 419 (432)
T COG2265 371 -PRAGADREVLKQLAK-LKPKRIVYVSCNPA---------TLARDLAILASTGYEIERVQ 419 (432)
T ss_pred -CCCCCCHHHHHHHHh-cCCCcEEEEeCCHH---------HHHHHHHHHHhCCeEEEEEE
Confidence 000001235555544 56778888876442 23333345667788765544
No 218
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0042 Score=60.84 Aligned_cols=82 Identities=17% Similarity=0.132 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC
Q 012961 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 272 (452)
Q Consensus 195 y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~ 272 (452)
.++.+.+..+. .+..+|||||+|.|.++..|+++ .|++++++...+..-....+ ...++.++.+|+..
T Consensus 18 v~~kIv~~a~~--------~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk 87 (259)
T COG0030 18 VIDKIVEAANI--------SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALK 87 (259)
T ss_pred HHHHHHHhcCC--------CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhc
Confidence 35555555542 22458999999999999999984 67788776654422221111 24568899999998
Q ss_pred CCCCCC-CceEEEec
Q 012961 273 LPYPSR-SFELAHCS 286 (452)
Q Consensus 273 lp~~d~-sFDlVv~s 286 (452)
.++++. .++.|+++
T Consensus 88 ~d~~~l~~~~~vVaN 102 (259)
T COG0030 88 FDFPSLAQPYKVVAN 102 (259)
T ss_pred CcchhhcCCCEEEEc
Confidence 888753 68888865
No 219
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.80 E-value=0.013 Score=59.44 Aligned_cols=117 Identities=11% Similarity=0.085 Sum_probs=73.0
Q ss_pred CCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
++.++|||||++|.|+..|+++ .|+++|..+.+- .......+.....|...+..+.+.+|.++|-.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~-------~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm----- 278 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ-------SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDM----- 278 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH-------hhhCCCCEEEEeccCcccCCCCCCCCEEEEec-----
Confidence 4568999999999999999985 466676443221 11224457777777544432257899999764
Q ss_pred cccHHHHHHHHHHhcCCC--cEEEEEeCCCCC-CChhhHHHHHHHHHHHHhCCC
Q 012961 293 LQRDGILLLELDRLLRPG--GYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCW 343 (452)
Q Consensus 293 ~~d~~~~L~ei~RvLkPG--G~lvi~~p~~~~-~~~~~~~~~~~l~~ll~~~Gf 343 (452)
...+..+++-+.+.|..| ..+|+..--.-. +..+.....+.+.+.+.+.|.
T Consensus 279 ve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 279 VEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred ccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 345667778888888766 355554422211 222223344557777777776
No 220
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.00097 Score=59.27 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=52.4
Q ss_pred CCEEEEECCCCchHHHHHh---hCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEec
Q 012961 216 IRNVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 286 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La---~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s 286 (452)
+.+++|+|||.|.++...+ ...|+|+|+.+..+.... +.|.+..+++.+.++|..++.+..+.||.++.+
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 4579999999998774443 247889988876654333 455566677788999988888777899999865
No 221
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.78 E-value=0.0073 Score=65.30 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=63.9
Q ss_pred CCEEEEECCCCchHHHHHhhC-----C--CccccCChhhhhHHHHHHHHHc----C-CCeEEEEecCCCC-----CCCCC
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----D--IIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRL-----PYPSR 278 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~--v~~vdis~~dis~~~~~~A~~r----g-~~~~~~~~d~~~l-----p~~d~ 278 (452)
..+|||.|||+|.+...++.. . ....++.+.|+++..+..++.. + ....+...|.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 458999999999999888752 1 1235566667766666665543 1 2233333332111 11124
Q ss_pred CceEEEeccccc--ccc-------------------------------------------ccHHHHH-HHHHHhcCCCcE
Q 012961 279 SFELAHCSRCRI--DWL-------------------------------------------QRDGILL-LELDRLLRPGGY 312 (452)
Q Consensus 279 sFDlVv~s~~~l--~~~-------------------------------------------~d~~~~L-~ei~RvLkPGG~ 312 (452)
.||+|+++---. ... .....++ ..+.++|++||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 799999853111 100 0001133 557899999999
Q ss_pred EEEEeCCCCCCC
Q 012961 313 FVYSSPEAYAHD 324 (452)
Q Consensus 313 lvi~~p~~~~~~ 324 (452)
+.+..|..+...
T Consensus 192 ~~~I~P~s~l~~ 203 (524)
T TIGR02987 192 VSIISPASWLGD 203 (524)
T ss_pred EEEEEChHHhcC
Confidence 999999876543
No 222
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.018 Score=54.38 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=61.9
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCceE
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp--------~~d~sFDl 282 (452)
+.+|+|+|+-.|+++..+++. .|+++|+.+.+.. ..+.++++|...-+ +....+|+
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 458999999999999999863 3788998887652 23667777754432 33345799
Q ss_pred EEeccc---ccccccc-------HHHHHHHHHHhcCCCcEEEEEe
Q 012961 283 AHCSRC---RIDWLQR-------DGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 283 Vv~s~~---~l~~~~d-------~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
|+|-.+ .-++..| ...++.-+..+|+|||.+++-.
T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 986321 1111111 1336777788999999999865
No 223
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.71 E-value=0.0024 Score=58.85 Aligned_cols=92 Identities=25% Similarity=0.310 Sum_probs=51.6
Q ss_pred CCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEec---------CCCC-CCCCCC
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG---------TKRL-PYPSRS 279 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d---------~~~l-p~~d~s 279 (452)
...+|||+||++|.|+..++++ .|+++|+.+.+.- ..+....+| .... +-..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHHHhhhhhccccccC
Confidence 4568999999999999999875 4678887765211 111111111 1111 111268
Q ss_pred ceEEEeccccccccc----cH-------HHHHHHHHHhcCCCcEEEEEeC
Q 012961 280 FELAHCSRCRIDWLQ----RD-------GILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 280 FDlVv~s~~~l~~~~----d~-------~~~L~ei~RvLkPGG~lvi~~p 318 (452)
||+|+|-. ...... +. ...+.-+...|+|||.+++-.-
T Consensus 92 ~dlv~~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 92 FDLVLSDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp ESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cceecccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 99999854 111111 11 2245555678999999888653
No 224
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.52 E-value=0.0076 Score=57.24 Aligned_cols=118 Identities=12% Similarity=0.101 Sum_probs=59.4
Q ss_pred CcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHH--HHHHHH---
Q 012961 188 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQ--IQFALE--- 258 (452)
Q Consensus 188 f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~--~~~A~~--- 258 (452)
|..........+.+.+.. .+....+|||||.|......+- ...+|+++.+.-...+. .+..++
T Consensus 23 YGEi~~~~~~~il~~~~l--------~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~ 94 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNL--------TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMK 94 (205)
T ss_dssp GGGCHHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHhCC--------CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence 333444445555555542 2345899999999987655542 23678888775332222 122111
Q ss_pred -cC---CCeEEEEecCCCCCCCC---CCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEE
Q 012961 259 -RG---IPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (452)
Q Consensus 259 -rg---~~~~~~~~d~~~lp~~d---~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi 315 (452)
.+ .++.+..+|..+.++.. ..-|+|++++. -|.++....|.+...-||+|-+++-
T Consensus 95 ~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 95 HYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNT--CFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HhhcccccceeeccCccccHhHhhhhcCCCEEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 12 23455555544322110 24699998873 3445666677888888998877663
No 225
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.50 E-value=0.0073 Score=60.20 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=65.4
Q ss_pred CCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHc--CCCeEEEEecCCC-CC-C-CCCCceEEEecc
Q 012961 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKR-LP-Y-PSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~r--g~~~~~~~~d~~~-lp-~-~d~sFDlVv~s~ 287 (452)
.++|||+=|=||.|+.+.+.. .|+.+|.+...+..+..+.+... ...+.+...|+.. +. . ..++||+|++--
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 358999999999999987652 57788877777666654444332 1346778777543 21 1 236899999832
Q ss_pred c-----cccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 288 C-----RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 288 ~-----~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
- ......+...++..+.++|+|||.+++++..
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 1 1111234466899999999999999887643
No 226
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.46 E-value=0.006 Score=63.14 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=65.8
Q ss_pred CEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEecCCCCC-CCCCCceEEEecccc
Q 012961 217 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCR 289 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~d~~~lp-~~d~sFDlVv~s~~~ 289 (452)
-+|||+.||+|..+..++.. .|+++|+++..+.... +.++..+. ++.+...|+..+- .....||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 47999999999999998863 4677777776554433 22333333 3667777755442 1235799998432
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+ ..+..++..+.+.+++||.+.++..
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2 3445799999999999999999853
No 227
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.083 Score=50.95 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=81.6
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHcCCCeEEE-EecCCCCC---CCCCCceEEEecc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-VLGTKRLP---YPSRSFELAHCSR 287 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg~~~~~~-~~d~~~lp---~~d~sFDlVv~s~ 287 (452)
+.+.+||||+.||.|+..++++ .|+++|+.-..++.. .+...++... ..++..+. +. +..|+|+|--
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k-----LR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK-----LRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh-----HhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 4568999999999999999974 677887765554443 3334444332 23344332 22 3678999854
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCC------------CChh-hHHHHHHHHHHHHhCCCEEEEEE
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPE-NRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~------------~~~~-~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
+.+. ...+|-.+..+|+++|.++.-.-+.+. .++. ......++.+.+.+.||.+....
T Consensus 153 SFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 153 SFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred ehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 4332 356899999999999988865533221 2222 22344688889999999887554
No 228
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.13 Score=48.39 Aligned_cols=155 Identities=16% Similarity=0.196 Sum_probs=98.8
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCC
Q 012961 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI 261 (452)
Q Consensus 186 ~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~ 261 (452)
..+.+...+....+..-+... .+ ..+.+||=+|+.+|+...++++ ..+.++++++....+- +..|.+|.
T Consensus 52 R~Wnp~RSKLaAaIl~Gl~~~--pi---~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL-l~~a~~R~- 124 (231)
T COG1889 52 REWNPRRSKLAAAILKGLKNF--PI---KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL-LDVAEKRP- 124 (231)
T ss_pred eeeCcchhHHHHHHHcCcccC--Cc---CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH-HHHHHhCC-
Confidence 344555666665555433311 12 3445899999999998888876 3578899999876544 47777763
Q ss_pred CeEEEEecCCCCC--C--CCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC-CCCChhhHHHHHHHHH
Q 012961 262 PSTLGVLGTKRLP--Y--PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYD 336 (452)
Q Consensus 262 ~~~~~~~d~~~lp--~--~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~-~~~~~~~~~~~~~l~~ 336 (452)
++.=+..|+.. | + --+..|+|++--+ -....+.+..++..-||+||+++++.-.. -....+....|.+-.+
T Consensus 125 Ni~PIL~DA~~-P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~ 200 (231)
T COG1889 125 NIIPILEDARK-PEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE 200 (231)
T ss_pred CceeeecccCC-cHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence 34334455432 2 1 1245899986431 12333568899999999999888765321 1223334456777777
Q ss_pred HHHhCCCEEEEEEec
Q 012961 337 LLKSMCWKIVSKKDQ 351 (452)
Q Consensus 337 ll~~~Gf~~v~~~~~ 351 (452)
.+++.+|++++.-+.
T Consensus 201 kL~~~~f~i~e~~~L 215 (231)
T COG1889 201 KLEEGGFEILEVVDL 215 (231)
T ss_pred HHHhcCceeeEEecc
Confidence 888899998876643
No 229
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.33 E-value=0.006 Score=56.86 Aligned_cols=132 Identities=18% Similarity=0.183 Sum_probs=74.6
Q ss_pred CceeecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHH
Q 012961 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (452)
Q Consensus 176 g~~~~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~ 252 (452)
|.....|.+ ....+..+..-+.+-+++... . -...++||+-||+|.++...+.+ .|+.+|.+...+....
T Consensus 10 gr~l~~p~~-~~~RPT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~ 82 (183)
T PF03602_consen 10 GRKLKTPKG-DNTRPTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK 82 (183)
T ss_dssp T-EEE-TT---TS-SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH
T ss_pred CCEecCCCC-CCcCCCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 344445443 244555667777777777642 0 13458999999999999988764 5666766655443222
Q ss_pred HHHHHHcCC--CeEEEEecCC-CCC---CCCCCceEEEecccccccccc--HHHHHHHHH--HhcCCCcEEEEEeC
Q 012961 253 IQFALERGI--PSTLGVLGTK-RLP---YPSRSFELAHCSRCRIDWLQR--DGILLLELD--RLLRPGGYFVYSSP 318 (452)
Q Consensus 253 ~~~A~~rg~--~~~~~~~d~~-~lp---~~d~sFDlVv~s~~~l~~~~d--~~~~L~ei~--RvLkPGG~lvi~~p 318 (452)
+.++.-+. .+.+...|+. .+. .....||+|++-- +|... ...++..+. .+|+++|.+++...
T Consensus 83 -~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 83 -KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp -HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 22332232 3566767732 221 2457899999643 33322 255777776 78999999999664
No 230
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.32 E-value=0.013 Score=57.30 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=50.3
Q ss_pred CCCEEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEecCCCCCCCCCCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~r-g~~~~~~~~d~~~lp~~d~sFDlVv~s 286 (452)
+...|||||-|||.++..|++ +.|+++++++.++.+-.....-.- ....++.++|....++| .||.++++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 455899999999999999987 478999888887755442222110 12357778887777665 59999964
No 231
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.30 E-value=0.023 Score=53.19 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=60.0
Q ss_pred CCCEEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~ 291 (452)
..++|||+|+|+|..+..-+. ..|+..|+.+. .-.+..-.+..++..+.+...|.-. .+..||+|+.+..+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~-~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW-LEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChH-HHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 457999999999976665554 35677777743 3233333445556666666655443 4578999998874333
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
+ +...+++. +.+.|+..|..+++.
T Consensus 155 ~-~~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 155 H-TEADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred c-hHHHHHHH-HHHHHHhCCCEEEEe
Confidence 3 33345666 666666656555544
No 232
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.15 E-value=0.024 Score=53.72 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcC----CCeEEEEe
Q 012961 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG----IPSTLGVL 268 (452)
Q Consensus 193 ~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg----~~~~~~~~ 268 (452)
..+.+.+++.+. .++++||.||-|-|.....+.++...---| ++.++...+.-+..| .++.+..+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~~H~I--iE~hp~V~krmr~~gw~ek~nViil~g 156 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWI--IEAHPDVLKRMRDWGWREKENVIILEG 156 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCcceEE--EecCHHHHHHHHhcccccccceEEEec
Confidence 345555555554 355699999999999888877653221111 123344444444443 23444444
Q ss_pred cCCCC--CCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 269 GTKRL--PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 269 d~~~l--p~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
-.++. .++|+.||-|+--. .-++-++...+.+.+.|+|||+|++-+..
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred chHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 33332 25688999998443 22556777779999999999999998643
No 233
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.88 E-value=0.059 Score=51.19 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=73.1
Q ss_pred EEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEecC-CCCCCCCCCceEEEeccccccc
Q 012961 219 VLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 219 VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~r-g~~~~~~~~d~-~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
|.||||-.|++..+|.+. .++++|+.+.-+..+....++.. ...+.+..+|. ..++- .+..|.|+.+.. --
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM--GG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGM--GG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE---H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecC--CH
Confidence 689999999999999974 57788888876665554444322 23477788873 44432 233788876542 11
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEec
Q 012961 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (452)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (452)
.-...+|.+....++..-.|++.-.. ....++..+.+.||.++...-.
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILqP~~----------~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQPNT----------HAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEEESS-----------HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEeCCC----------ChHHHHHHHHHCCCEEEEeEEE
Confidence 11234677777777776678775422 2467999999999999877643
No 234
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.80 E-value=0.019 Score=59.09 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=37.5
Q ss_pred EEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEEecCCCC
Q 012961 218 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL 273 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~rg-~~~~~~~~d~~~l 273 (452)
+|||+-||.|.++..|++ ..|+|+++.+..+..+. +.|+..+ .++.+..++++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEEeeccch
Confidence 799999999999999997 47889988887776555 3444444 4577877665443
No 235
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.79 E-value=0.068 Score=54.42 Aligned_cols=163 Identities=17% Similarity=0.109 Sum_probs=95.3
Q ss_pred CceeecCCCCCCCccc-HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC----CCccccCChhhhhH
Q 012961 176 GEKINFPGGGTHFHDG-ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHE 250 (452)
Q Consensus 176 g~~~~F~g~g~~f~~~-~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~ 250 (452)
.+..-|.+++-+|... ..+|.+.+.- + .+..-...++||=+|-|.|.-++.|.+. +|+-+|++|.+++-
T Consensus 255 ~d~rLYldG~LQfsTrDe~RYhEsLV~--p----als~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miel 328 (508)
T COG4262 255 DDLRLYLDGGLQFSTRDEYRYHESLVY--P----ALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIEL 328 (508)
T ss_pred CceEEEEcCceeeeechhhhhhheeee--c----ccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHH
Confidence 4566677777777543 3345543321 1 1111134568999999999999999873 56677777766654
Q ss_pred HHHHHHHHc-------CCCeEEEEecCCCC-CCCCCCceEEEeccccccccccH-----HHHHHHHHHhcCCCcEEEEEe
Q 012961 251 NQIQFALER-------GIPSTLGVLGTKRL-PYPSRSFELAHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 251 ~~~~~A~~r-------g~~~~~~~~d~~~l-p~~d~sFDlVv~s~~~l~~~~d~-----~~~L~ei~RvLkPGG~lvi~~ 317 (452)
+.-..+... ..++.++..|+..+ .-..+.||.|+.-. .-+-.+.. ..+..-+.|.|+++|.+++..
T Consensus 329 a~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 329 ASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred hhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 432222111 23456666664433 22345899998532 00000111 337778889999999999987
Q ss_pred CCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 318 PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 318 p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
-..|..... |-.+..-++++||.+.-..
T Consensus 408 gs~y~tp~v----fw~i~aTik~AG~~~~Pyh 435 (508)
T COG4262 408 GSPYFTPRV----FWRIDATIKSAGYRVWPYH 435 (508)
T ss_pred CCCccCCce----eeeehhHHHhCcceeeeeE
Confidence 655532221 2246667899999876544
No 236
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.79 E-value=0.067 Score=55.49 Aligned_cols=45 Identities=20% Similarity=0.408 Sum_probs=32.6
Q ss_pred CCCCCCceEEEeccccccccccH--------------------------------------HHHHHHHHHhcCCCcEEEE
Q 012961 274 PYPSRSFELAHCSRCRIDWLQRD--------------------------------------GILLLELDRLLRPGGYFVY 315 (452)
Q Consensus 274 p~~d~sFDlVv~s~~~l~~~~d~--------------------------------------~~~L~ei~RvLkPGG~lvi 315 (452)
-||+++.++++++. .+||.... ..+|+-=.+-|.|||++++
T Consensus 157 LfP~~Slh~~~Ss~-slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAF-SLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeec-cceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 37899999999998 58997531 1134444466899999999
Q ss_pred EeCC
Q 012961 316 SSPE 319 (452)
Q Consensus 316 ~~p~ 319 (452)
+...
T Consensus 236 ~~~G 239 (386)
T PLN02668 236 VCLG 239 (386)
T ss_pred EEec
Confidence 8643
No 237
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.72 E-value=0.038 Score=61.90 Aligned_cols=103 Identities=18% Similarity=0.068 Sum_probs=57.9
Q ss_pred CCEEEEECCCCchHHHHHhhC----------C-------------------------------CccccCChhhhhHHHHH
Q 012961 216 IRNVLDVGCGVASFGAYLLSH----------D-------------------------------IIAMSLAPNDVHENQIQ 254 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~----------~-------------------------------v~~vdis~~dis~~~~~ 254 (452)
...++|.+||+|++....+.. . .....+.+.|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 358999999999988665420 0 00112344444444444
Q ss_pred HHHH----cCC--CeEEEEecCCCCCCC--CCCceEEEeccccccccc---cHHHHHHHH---HHhcCCCcEEEEEeC
Q 012961 255 FALE----RGI--PSTLGVLGTKRLPYP--SRSFELAHCSRCRIDWLQ---RDGILLLEL---DRLLRPGGYFVYSSP 318 (452)
Q Consensus 255 ~A~~----rg~--~~~~~~~d~~~lp~~--d~sFDlVv~s~~~l~~~~---d~~~~L~ei---~RvLkPGG~lvi~~p 318 (452)
.|++ .|. .+.+...|+.+++.+ .++||+|+++--...-.. +...+..++ .+.+.+|+.+++.++
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4443 344 367888898887654 357999998732111111 122233333 333448988877553
No 238
>PRK13699 putative methylase; Provisional
Probab=95.72 E-value=0.038 Score=53.30 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=50.7
Q ss_pred EEEecCCCC--CCCCCCceEEEecccc---cc-----------ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhH
Q 012961 265 LGVLGTKRL--PYPSRSFELAHCSRCR---ID-----------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (452)
Q Consensus 265 ~~~~d~~~l--p~~d~sFDlVv~s~~~---l~-----------~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~ 328 (452)
+..+|..++ .++++++|+|++.--- .. +.+-....+.|++|+|||||.+++.....
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-------- 75 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-------- 75 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc--------
Confidence 445564433 4678888888875210 00 00112468899999999999988632111
Q ss_pred HHHHHHHHHHHhCCCEEEEEEeceeEeeccc
Q 012961 329 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (452)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~~~~~~~iw~kp~ 359 (452)
....+..++++.||.+. ...+|.|+.
T Consensus 76 -~~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 76 -RVDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred -cHHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 12345667889999865 345898875
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.66 E-value=0.052 Score=53.82 Aligned_cols=124 Identities=11% Similarity=0.150 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHh-hC-----CCccccCChhhhhHHHHHHHH---HcCC
Q 012961 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL-SH-----DIIAMSLAPNDVHENQIQFAL---ERGI 261 (452)
Q Consensus 191 ~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La-~~-----~v~~vdis~~dis~~~~~~A~---~rg~ 261 (452)
..+.|.+.+..-+..... ..+..+++|+=||||.=-++..+. +. .|+++|+++...+.+. +..+ ..+.
T Consensus 98 Yy~nY~~L~~lE~~~l~~--~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~ 174 (276)
T PF03059_consen 98 YYPNYEKLVRLEYAALRI--HAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSK 174 (276)
T ss_dssp THHHHHHHHHHHHH-HTT----TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-S
T ss_pred cHHHHHHHHHHHHHHHhh--cCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccC
Confidence 456666655543332211 112245699999999765554443 32 2445666554443332 1112 1245
Q ss_pred CeEEEEecCCCCCCCCCCceEEEeccccccc-cccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 262 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW-LQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 262 ~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~-~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
...+..+|....+..-..||+|+.+. .... .++...++..+.+.++||..+++...
T Consensus 175 ~m~f~~~d~~~~~~dl~~~DvV~lAa-lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 175 RMSFITADVLDVTYDLKEYDVVFLAA-LVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp SEEEEES-GGGG-GG----SEEEE-T-T-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred CeEEEecchhccccccccCCEEEEhh-hcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 67888888776665446899998665 2322 23557799999999999999998653
No 240
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.65 E-value=0.088 Score=46.65 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=55.9
Q ss_pred CCCCEEEEECCCCchHHHHHhh-----C---CCccccCChhhhhHHHHHHHHHcC----CCeEEEEecCCCCCCCCCCce
Q 012961 214 GNIRNVLDVGCGVASFGAYLLS-----H---DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKRLPYPSRSFE 281 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La~-----~---~v~~vdis~~dis~~~~~~A~~rg----~~~~~~~~d~~~lp~~d~sFD 281 (452)
.+..+|+|+|||.|+++..|+. . .|+++|..+..+..+ ...+++.+ ....+...+..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESA-QKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHH-HHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4566899999999999999987 3 566777665543222 23333333 12233333322221 135567
Q ss_pred EEEeccccccccccHH-HHHHHHHHhcCCCcEEEEEeCCCC
Q 012961 282 LAHCSRCRIDWLQRDG-ILLLELDRLLRPGGYFVYSSPEAY 321 (452)
Q Consensus 282 lVv~s~~~l~~~~d~~-~~L~ei~RvLkPGG~lvi~~p~~~ 321 (452)
+++ .+|--.+.. .+|+-..+ ++-.+++..|--|
T Consensus 102 ~~v----gLHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 102 ILV----GLHACGDLSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred EEE----EeecccchHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 776 355555543 34444444 7767776666554
No 241
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.069 Score=54.98 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=73.9
Q ss_pred CCCCEEEEECCCCchHHHHHhhC-----C-CccccCChhhhhHHHHHHHHHcCCC-eEEEEecCCCCC--CCC-CCceEE
Q 012961 214 GNIRNVLDVGCGVASFGAYLLSH-----D-IIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP--YPS-RSFELA 283 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La~~-----~-v~~vdis~~dis~~~~~~A~~rg~~-~~~~~~d~~~lp--~~d-~sFDlV 283 (452)
.++.+|||+.++.|.=+.++++. . |+++|+++.=+.. ..+..+..|.. +.+...|...++ .+. +.||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~-l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKR-LRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHH-HHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 34569999999999877777752 1 3666666543322 22333344554 466677765553 222 359999
Q ss_pred Eec-----cccccccc----------------cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhC-
Q 012961 284 HCS-----RCRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM- 341 (452)
Q Consensus 284 v~s-----~~~l~~~~----------------d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~- 341 (452)
+.- ..++.-.+ -...+|....++|||||.|+.++=....... -+.+..++++.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eEN-----E~vV~~~L~~~~ 308 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEEN-----EEVVERFLERHP 308 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcC-----HHHHHHHHHhCC
Confidence 861 11221111 1134899999999999999998744321111 13455566554
Q ss_pred CCEEE
Q 012961 342 CWKIV 346 (452)
Q Consensus 342 Gf~~v 346 (452)
+|+.+
T Consensus 309 ~~~~~ 313 (355)
T COG0144 309 DFELE 313 (355)
T ss_pred Cceee
Confidence 55544
No 242
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.52 E-value=0.039 Score=56.33 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=38.9
Q ss_pred CCCCEEEEECCCCchHHHHHhhC--------------------CCccccCChhhhhHHHHHHHHH-----cCCCeEE--E
Q 012961 214 GNIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-----RGIPSTL--G 266 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La~~--------------------~v~~vdis~~dis~~~~~~A~~-----rg~~~~~--~ 266 (452)
...-+|+|+||..|..+..+... .|.--|+-.+|.+.-....... ...++-. +
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34568999999999877766541 1223355555554332211111 1223222 1
Q ss_pred EecCCCCCCCCCCceEEEeccccccccc
Q 012961 267 VLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 267 ~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
-++...--||+++.|+++++. .+||+.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~-alHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSY-ALHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEec-hhhhcc
Confidence 223333347899999999988 588863
No 243
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.42 E-value=0.18 Score=47.05 Aligned_cols=134 Identities=21% Similarity=0.196 Sum_probs=78.6
Q ss_pred CceeecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHH
Q 012961 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (452)
Q Consensus 176 g~~~~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~ 252 (452)
|....++.+ ....+..+..-+.+-+++... .-.+.++||+=+|+|.++...+.+ .++.+|.+........
T Consensus 11 gr~L~~p~~-~~~RPT~drVREalFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~ 83 (187)
T COG0742 11 GRKLKTPDG-PGTRPTTDRVREALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK 83 (187)
T ss_pred CCcccCCCC-CCcCCCchHHHHHHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH
Confidence 444555544 344566677777777777631 124458999999999999998874 5666666554432222
Q ss_pred HHHHHHcC--CCeEEEEecCCCC-CCCCC--CceEEEeccccccc-cccHHHHHH--HHHHhcCCCcEEEEEeC
Q 012961 253 IQFALERG--IPSTLGVLGTKRL-PYPSR--SFELAHCSRCRIDW-LQRDGILLL--ELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 253 ~~~A~~rg--~~~~~~~~d~~~l-p~~d~--sFDlVv~s~~~l~~-~~d~~~~L~--ei~RvLkPGG~lvi~~p 318 (452)
+..+.-+ .++.+...|+... +-... .||+|+.-- -++. ..+....+. +-...|+|+|.+++...
T Consensus 84 -~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 84 -ENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP-PYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred -HHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2223334 4567777776533 21222 499999643 1221 111122222 35577999999999654
No 244
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.26 E-value=0.029 Score=56.26 Aligned_cols=72 Identities=17% Similarity=-0.010 Sum_probs=47.2
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHc---CCCeEEEEecCCCCC--CCC--CCceEE
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLP--YPS--RSFELA 283 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~r---g~~~~~~~~d~~~lp--~~d--~sFDlV 283 (452)
...+||.+||.|..+..+++. .|+|+|.++.+ ++.|+++ ..++.++..+..++. .++ .++|.|
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~a-----l~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDA-----IAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGI 94 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHH-----HHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence 348999999999999999874 35566555544 4544443 245778877766543 122 279999
Q ss_pred Eeccccccc
Q 012961 284 HCSRCRIDW 292 (452)
Q Consensus 284 v~s~~~l~~ 292 (452)
++...+..+
T Consensus 95 l~DLGvSs~ 103 (296)
T PRK00050 95 LLDLGVSSP 103 (296)
T ss_pred EECCCcccc
Confidence 886544333
No 245
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.26 E-value=0.13 Score=50.74 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=52.3
Q ss_pred CCCEEEEECCCCc--hHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCCC--eEEEEecCCCC------------
Q 012961 215 NIRNVLDVGCGVA--SFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRL------------ 273 (452)
Q Consensus 215 ~~~~VLDIGCG~G--~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~~--~~~~~~d~~~l------------ 273 (452)
.++..||||||-- ...-.+++ .+|.-+|..+.-+..+..-.+ ...+ ..++.+|..+.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--DNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--T-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--CCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 5678999999954 22333332 468888888765543322222 2233 67777876542
Q ss_pred -CCCCCCceEEEecccccccccc---HHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 274 -PYPSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 274 -p~~d~sFDlVv~s~~~l~~~~d---~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
.+ ++..=++ ...++||++| +..++..+...|.||.+|+|+...
T Consensus 146 lD~-~rPVavl--l~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 146 LDF-DRPVAVL--LVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp --T-TS--EEE--ECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCC-CCCeeee--eeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 12 2333333 3347888755 577999999999999999998753
No 246
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.23 E-value=0.2 Score=47.01 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhh-----hH--HHHHHHHHcC-CCeEEEEecCCCCC-------CC
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDV-----HE--NQIQFALERG-IPSTLGVLGTKRLP-------YP 276 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~di-----s~--~~~~~A~~rg-~~~~~~~~d~~~lp-------~~ 276 (452)
+..+|+|+=-|.|.|+..++.. .-....+.+.+. .+ .+...+++.. .+...+-.+.-.++ .+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 4568999999999999999862 111122222222 11 1111222221 11111111111222 12
Q ss_pred CCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCC----CChhhHH--HHHHHHHHHHhCCCEEEEEEe
Q 012961 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA----HDPENRR--IWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 277 d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~----~~~~~~~--~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
..++|.++... .+| ......+..++++.|||||.+++.+..... .+..... .-..+....+..||++..+..
T Consensus 128 ~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 128 TAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred cchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeeh
Confidence 23444444332 233 344577999999999999999987643221 1111111 124567788999999887665
Q ss_pred ce
Q 012961 351 QT 352 (452)
Q Consensus 351 ~~ 352 (452)
..
T Consensus 206 il 207 (238)
T COG4798 206 IL 207 (238)
T ss_pred hh
Confidence 43
No 247
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.04 E-value=0.05 Score=53.49 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHH---cCCCeEEEE
Q 012961 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE---RGIPSTLGV 267 (452)
Q Consensus 193 ~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~---rg~~~~~~~ 267 (452)
....+.+.+.+.. .+...|||||.|.|.++..|++. .++++++++. ..+..++ ...++.++.
T Consensus 16 ~~~~~~Iv~~~~~--------~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~-----~~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 16 PNIADKIVDALDL--------SEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPD-----LAKHLKERFASNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHHHHTC--------GTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHH-----HHHHHHHHCTTCSSEEEEE
T ss_pred HHHHHHHHHhcCC--------CCCCEEEEeCCCCccchhhHhcccCcceeecCcHh-----HHHHHHHHhhhcccceeee
Confidence 4566667777663 24458999999999999999873 5777776654 3344444 245788999
Q ss_pred ecCCCCCCCC---CCceEEEeccccccccccHHHHHHHHHHhcCC
Q 012961 268 LGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRP 309 (452)
Q Consensus 268 ~d~~~lp~~d---~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkP 309 (452)
.|+..+.... +....|+++ +++ .-...++..+...-+.
T Consensus 83 ~D~l~~~~~~~~~~~~~~vv~N---lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 83 GDFLKWDLYDLLKNQPLLVVGN---LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp S-TTTSCGGGHCSSSEEEEEEE---ETG-TGHHHHHHHHHHHGGG
T ss_pred cchhccccHHhhcCCceEEEEE---ecc-cchHHHHHHHhhcccc
Confidence 9988887654 345566654 444 2223456666554343
No 248
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.86 E-value=0.16 Score=52.36 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=68.1
Q ss_pred CEEEEECCCCchHHHHHhhC--C-----------------------------------------CccccCChhhhhHHHH
Q 012961 217 RNVLDVGCGVASFGAYLLSH--D-----------------------------------------IIAMSLAPNDVHENQI 253 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--~-----------------------------------------v~~vdis~~dis~~~~ 253 (452)
..++|-=||+|++....+.. + ++|+|+++..+..+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 57999999999998776531 1 447777777664443
Q ss_pred HHHHHcCCC--eEEEEecCCCCCCCCCCceEEEecccccccc---cc---H----HHHHHHHHHhcCCCcEEEEEeC
Q 012961 254 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QR---D----GILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 254 ~~A~~rg~~--~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~---~d---~----~~~L~ei~RvLkPGG~lvi~~p 318 (452)
..|++.|.. +.|.++|+..++-+-+.+|+|+|+- +|- .+ . ..+.+.+.+.++--+.+++++.
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 555666655 7889999988865447899999863 221 11 1 2356677788888888888764
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.72 E-value=0.0087 Score=50.01 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=38.2
Q ss_pred EEECCCCchHHHHHhhC-------CCccccCChhhhhHHHHHHHHHc--CCCeEEEEecCCCC--CCCCCCceEEEeccc
Q 012961 220 LDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRL--PYPSRSFELAHCSRC 288 (452)
Q Consensus 220 LDIGCG~G~~~~~La~~-------~v~~vdis~~dis~~~~~~A~~r--g~~~~~~~~d~~~l--p~~d~sFDlVv~s~~ 288 (452)
||||+..|..+..+++. .++++|..+. .+...+..++. ...+.+..++..+. .+++++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888887752 4677777663 11222333322 23477777775432 13357899998543
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
-|-.+.....++.+.+.|+|||.+++.+
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2223444557889999999999999853
No 250
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.49 E-value=0.054 Score=49.56 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=42.5
Q ss_pred EEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCCC--CCCCC-ceEEEec
Q 012961 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRS-FELAHCS 286 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~lp--~~d~s-FDlVv~s 286 (452)
+|+|+.||.|..+..++.. .|+++|+++.-+.-++ ..|+--|. ++.++.+|..++. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999984 5888888776554333 44555554 5788888854432 12122 8999975
No 251
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.14 E-value=1.5 Score=42.67 Aligned_cols=133 Identities=15% Similarity=0.134 Sum_probs=73.0
Q ss_pred CCCEEEEECCCCc-hHHHHHhh--CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC-CCCC-CCCceEEEecccc
Q 012961 215 NIRNVLDVGCGVA-SFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYP-SRSFELAHCSRCR 289 (452)
Q Consensus 215 ~~~~VLDIGCG~G-~~~~~La~--~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~-lp~~-d~sFDlVv~s~~~ 289 (452)
.+++||=||=..- +++..|.. .+|+.+|++..-+.-- .+.|++.|.++.....|+.. ||-. .++||++++--
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI-~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFI-NRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHH-HHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHH-HHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 3568999996655 34444433 4678888877665433 35677778888888888643 3311 37899999753
Q ss_pred cccc-ccHHHHHHHHHHhcCCCc-EEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEeceeEe
Q 012961 290 IDWL-QRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 355 (452)
Q Consensus 290 l~~~-~d~~~~L~ei~RvLkPGG-~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw 355 (452)
.+. +-...++.+....||..| ..+++. .+.+.....|.++++.+.++||.+.......-.|
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~----~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y 183 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYFGF----THKEASPDKWLEVQRFLLEMGLVITDIIPDFNRY 183 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEEEEEB
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEEEE----ecCcCcHHHHHHHHHHHHHCCcCHHHHHhhhccc
Confidence 232 334668999999998766 333322 2222245678899999999999887766554333
No 252
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.068 Score=56.63 Aligned_cols=72 Identities=22% Similarity=0.353 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEe
Q 012961 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVL 268 (452)
Q Consensus 192 ~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~-~~~~~~~ 268 (452)
++.....+.+.+.+ +....+||+-||||.++..++.+ .|+|+++++.++..+. ..|...|+ ++.|+++
T Consensus 368 aevLys~i~e~~~l--------~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGL--------PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQINGISNATFIVG 438 (534)
T ss_pred HHHHHHHHHHHhCC--------CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcchhcCccceeeeec
Confidence 44455555565553 22368999999999999999974 7999999998887665 44445554 5778877
Q ss_pred cCCC
Q 012961 269 GTKR 272 (452)
Q Consensus 269 d~~~ 272 (452)
-+++
T Consensus 439 qaE~ 442 (534)
T KOG2187|consen 439 QAED 442 (534)
T ss_pred chhh
Confidence 4444
No 253
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.87 E-value=0.1 Score=49.12 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=51.3
Q ss_pred EEEEECCCCchHHHHHhh----CCCccccCChh--hhhHHHHHHHHHcC-----CCeEEEEec-CCCCC--CCCCC-ceE
Q 012961 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPN--DVHENQIQFALERG-----IPSTLGVLG-TKRLP--YPSRS-FEL 282 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~----~~v~~vdis~~--dis~~~~~~A~~rg-----~~~~~~~~d-~~~lp--~~d~s-FDl 282 (452)
.+.|||||-|.+...|+. ..++|++|--. |.-++.++..+... .++.+...+ ..-+| |.-++ +-+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 599999999999999986 35677766432 22333444443221 112222222 11222 11111 111
Q ss_pred EEecccccccccc-------HHHHHHHHHHhcCCCcEEEEEe
Q 012961 283 AHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 283 Vv~s~~~l~~~~d-------~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.++.. --|+-.. ...++.+..-+|++||.++..+
T Consensus 143 ff~fp-dpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFP-DPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecC-ChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22211 1111110 0238899999999999999754
No 254
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.53 E-value=0.076 Score=52.91 Aligned_cols=126 Identities=21% Similarity=0.245 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCCC-eEEEEecCCCC-C-CCCCCceEEEe-
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRL-P-YPSRSFELAHC- 285 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~~-~~~~~~d~~~l-p-~~d~sFDlVv~- 285 (452)
+..+|||+.+|.|.=+..+++ ..+++.|++..-+..- ...+++.|.. +.+...|.... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l-~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRL-KENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHH-HHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHH-HHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 445799999999988777775 2456666655433222 2333344544 44444565444 1 22346999986
Q ss_pred ---cc-ccccccc----------------cHHHHHHHHHHhc----CCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhC
Q 012961 286 ---SR-CRIDWLQ----------------RDGILLLELDRLL----RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (452)
Q Consensus 286 ---s~-~~l~~~~----------------d~~~~L~ei~RvL----kPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~ 341 (452)
+. .++...+ -...+|+.+.+.| ||||+++.++=..... +.-+.++.++++.
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e-----ENE~vV~~fl~~~ 238 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE-----ENEEVVEKFLKRH 238 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG-----GTHHHHHHHHHHS
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH-----HHHHHHHHHHHhC
Confidence 11 0111111 1134899999999 9999999987332111 1123455566654
Q ss_pred -CCEEE
Q 012961 342 -CWKIV 346 (452)
Q Consensus 342 -Gf~~v 346 (452)
.|+++
T Consensus 239 ~~~~l~ 244 (283)
T PF01189_consen 239 PDFELV 244 (283)
T ss_dssp TSEEEE
T ss_pred CCcEEE
Confidence 55544
No 255
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.34 E-value=0.32 Score=49.47 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=29.9
Q ss_pred CCceEEEecccccccccc--HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012961 278 RSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d--~~~~L~ei~RvLkPGG~lvi~~p~~ 320 (452)
..|++|+...-+++.-.. ....++.+..++.|||.|+|+.++.
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 468888765544443211 1337899999999999999998654
No 256
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.24 E-value=0.081 Score=49.28 Aligned_cols=88 Identities=15% Similarity=0.252 Sum_probs=61.3
Q ss_pred EEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHc-----CCCeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 218 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~r-----g~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
.+.|+|+|+|.++...+. .+|++++..+. ....|.+. ..++.++++|+....| ..-|+|+|-. +
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk-----~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm--l 105 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDPK-----RARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM--L 105 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCcH-----HHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH--h
Confidence 699999999988877665 36788866553 33455554 2457888999988888 3579999853 2
Q ss_pred cc---cccHHHHHHHHHHhcCCCcEEE
Q 012961 291 DW---LQRDGILLLELDRLLRPGGYFV 314 (452)
Q Consensus 291 ~~---~~d~~~~L~ei~RvLkPGG~lv 314 (452)
.- .+..-.++..+..-||-++.++
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 11 1222347777888888888887
No 257
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.15 E-value=0.14 Score=44.89 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=26.5
Q ss_pred EEEEECCCCchHHHHHhhC----CCccccCChhhhhHHH
Q 012961 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQ 252 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~ 252 (452)
++||||||.|.++..++.. .+++++..+......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999999988863 4777777776654444
No 258
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.00 E-value=0.39 Score=48.16 Aligned_cols=95 Identities=16% Similarity=0.264 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHh----hCCCccccCChhhhhHHHHHHHHHcCC--Ce
Q 012961 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI--PS 263 (452)
Q Consensus 190 ~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La----~~~v~~vdis~~dis~~~~~~A~~rg~--~~ 263 (452)
+++-.|+..+.+++......++ ...++||||+|...+--.|. .-.++|.|+++..+..+.....+..++ .+
T Consensus 80 P~R~nYi~~i~DlL~~~~~~~~---~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I 156 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPGIP---EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRI 156 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCGCS------EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTE
T ss_pred chhHHHHHHHHHHhhccccccc---cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccce
Confidence 4556888889988875433221 14589999999875433332 225666777666665555444433132 35
Q ss_pred EEEEecCC-C----CCCCCCCceEEEecc
Q 012961 264 TLGVLGTK-R----LPYPSRSFELAHCSR 287 (452)
Q Consensus 264 ~~~~~d~~-~----lp~~d~sFDlVv~s~ 287 (452)
.+...... . +-.+++.||+.+|+-
T Consensus 157 ~l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 157 ELRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred EEEEcCCccccchhhhcccceeeEEecCC
Confidence 55443211 1 112346899999975
No 259
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.62 E-value=0.28 Score=43.70 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=57.8
Q ss_pred CccccCChhhhhHHHHHHHHHcC-CCeEEEEecCCCCC--CCCCCceEEEeccccccccc-----cH---HHHHHHHHHh
Q 012961 238 IIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRCRIDWLQ-----RD---GILLLELDRL 306 (452)
Q Consensus 238 v~~vdis~~dis~~~~~~A~~rg-~~~~~~~~d~~~lp--~~d~sFDlVv~s~~~l~~~~-----d~---~~~L~ei~Rv 306 (452)
|.++||-...+............ .++.++..+=+.+. .+.+++|+|+.+..-++-.+ .+ -.+++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 45666655544333322222211 24677766645443 23348999987654443211 11 2388999999
Q ss_pred cCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHH---hCCCEEEEEE
Q 012961 307 LRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK---SMCWKIVSKK 349 (452)
Q Consensus 307 LkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~---~~Gf~~v~~~ 349 (452)
|+|||.++++. |...+...+..+.+.+.++ ...|.+...+
T Consensus 82 L~~gG~i~iv~---Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 82 LKPGGIITIVV---YPGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp EEEEEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred hccCCEEEEEE---eCCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 99999999987 3333444444555555555 4567776555
No 260
>PRK11524 putative methyltransferase; Provisional
Probab=92.16 E-value=0.42 Score=47.56 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=48.2
Q ss_pred EEEEecCCCC--CCCCCCceEEEecccc-c--c------------ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChh
Q 012961 264 TLGVLGTKRL--PYPSRSFELAHCSRCR-I--D------------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE 326 (452)
Q Consensus 264 ~~~~~d~~~l--p~~d~sFDlVv~s~~~-l--~------------~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~ 326 (452)
.+..+|...+ .+++++||+|++.--. . . |..-....+.++.|+|||||.+++......
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~----- 84 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN----- 84 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchh-----
Confidence 4555665443 3567889999984210 0 0 111124589999999999999998642211
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEeceeEeeccc
Q 012961 327 NRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (452)
Q Consensus 327 ~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~kp~ 359 (452)
.. ...++.+.||... ...+|+|+.
T Consensus 85 ----~~-~~~~~~~~~f~~~----~~iiW~k~~ 108 (284)
T PRK11524 85 ----MP-FIDLYCRKLFTIK----SRIVWSYDS 108 (284)
T ss_pred ----hh-HHHHHHhcCcceE----EEEEEEeCC
Confidence 11 1234445678643 345898853
No 261
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.02 E-value=0.73 Score=44.44 Aligned_cols=97 Identities=16% Similarity=0.299 Sum_probs=54.1
Q ss_pred cccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCC-
Q 012961 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP- 262 (452)
Q Consensus 189 ~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~- 262 (452)
-++...|+..++++|....+.++ ++..++||||.|.--+ ..|... +.+|.|+++..++.+........+..
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnCI-YPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~ 130 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANCI-YPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLER 130 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCcccc-cccccceeecceeecCccCHHHHHHHHHHHHcCcchhh
Confidence 46788999999999987665555 3445899999886532 223332 34455555544444443333222222
Q ss_pred -eEEEEec-CCCC-C---CCCCCceEEEeccc
Q 012961 263 -STLGVLG-TKRL-P---YPSRSFELAHCSRC 288 (452)
Q Consensus 263 -~~~~~~d-~~~l-p---~~d~sFDlVv~s~~ 288 (452)
+.+.... ...+ + -..+.||++.|+--
T Consensus 131 ~I~lr~qk~~~~if~giig~nE~yd~tlCNPP 162 (292)
T COG3129 131 AIRLRRQKDSDAIFNGIIGKNERYDATLCNPP 162 (292)
T ss_pred heeEEeccCccccccccccccceeeeEecCCC
Confidence 2332222 1111 1 12568999999863
No 262
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=90.77 E-value=1.5 Score=41.08 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCEEEEECCCCchHHHHHhhC-----CCccccCCh
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAP 245 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-----~v~~vdis~ 245 (452)
..+|||+||..|+++....++ .|.|+|+..
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 458999999999999887763 356666544
No 263
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=90.62 E-value=0.96 Score=47.13 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=69.5
Q ss_pred CCCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCCCe-EEEEecCCCCC---CCCCCceEEE
Q 012961 214 GNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPS-TLGVLGTKRLP---YPSRSFELAH 284 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~~~-~~~~~d~~~lp---~~d~sFDlVv 284 (452)
.++.+|||+.+-.|.=+.+++. ..|.+.|....-+. ...+.+.+.|... .+...|...+| ++. +||-|+
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~-~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLK-SLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHH-HHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 3556999999999965555543 13444544433222 1223334446543 34455665554 453 899998
Q ss_pred e----ccccc-----------------cccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhC-C
Q 012961 285 C----SRCRI-----------------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-C 342 (452)
Q Consensus 285 ~----s~~~l-----------------~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~-G 342 (452)
. +...+ .+..-..++|.....++++||+|+.++=.......+ ..+.-++++. .
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE-----~vV~yaL~K~p~ 392 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENE-----AVVDYALKKRPE 392 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhH-----HHHHHHHHhCCc
Confidence 4 22101 011112458888999999999999987443211111 1244455555 5
Q ss_pred CEEEE
Q 012961 343 WKIVS 347 (452)
Q Consensus 343 f~~v~ 347 (452)
++++.
T Consensus 393 ~kL~p 397 (460)
T KOG1122|consen 393 VKLVP 397 (460)
T ss_pred eEecc
Confidence 55553
No 264
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.47 E-value=0.18 Score=42.90 Aligned_cols=38 Identities=21% Similarity=0.552 Sum_probs=27.3
Q ss_pred CceEEEecccccccc----cc--HHHHHHHHHHhcCCCcEEEEEe
Q 012961 279 SFELAHCSRCRIDWL----QR--DGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 279 sFDlVv~s~~~l~~~----~d--~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.||+|+|.. +.-|+ .| ...+++.+++.|+|||+|++.-
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999854 45553 12 2459999999999999999854
No 265
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=90.44 E-value=1.8 Score=42.36 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=55.2
Q ss_pred CCEEEEECCCCchHHHHHhh---CCCccccCChhh--hhHHH--HHHH-HHcCCCeEEEEecCCCCC---CCCCC-ceEE
Q 012961 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPND--VHENQ--IQFA-LERGIPSTLGVLGTKRLP---YPSRS-FELA 283 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~---~~v~~vdis~~d--is~~~--~~~A-~~rg~~~~~~~~d~~~lp---~~d~s-FDlV 283 (452)
..+||++|+|+|..+...+. ..+...|..... +.... .+.+ .+.|..+.+...+....+ +-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 45799999999966655543 233333332211 11110 0011 112334444333322211 11123 9999
Q ss_pred EeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 284 v~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
+++.+ +......+.++.-+...|..+|.+++..
T Consensus 167 lasDv-vy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 167 LASDV-VYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEeee-eecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 99985 4445666778999999999999666654
No 266
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=90.35 E-value=1.4 Score=43.12 Aligned_cols=131 Identities=20% Similarity=0.226 Sum_probs=68.4
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHH----HHcCCCeEEEEecCCCCCCCCCCceEEEeccccc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFA----LERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A----~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l 290 (452)
.+.+|+|||||.=-++....... .+..+.+.|++..++++. ...+.+..+.+.|...-+. ....|+++..- ++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~-~~~~DlaLllK-~l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP-KEPADLALLLK-TL 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT-TSEESEEEEET--H
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC-CCCcchhhHHH-HH
Confidence 35689999999998888777531 122333344444444443 3346777888888655433 36799998654 45
Q ss_pred cccccHHH-HHHHHHHhcCCCcEEEEEeCCCCC--CChhhHH-HHHHHHHHHHhCCCEEEEEE
Q 012961 291 DWLQRDGI-LLLELDRLLRPGGYFVYSSPEAYA--HDPENRR-IWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 291 ~~~~d~~~-~L~ei~RvLkPGG~lvi~~p~~~~--~~~~~~~-~~~~l~~ll~~~Gf~~v~~~ 349 (452)
+-++.... ...++...++ .=.++++.|..-- +...... .-..++.++..-+|.+-+..
T Consensus 182 p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~ 243 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLT 243 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeee
Confidence 55443311 2223333332 2256666664321 1122222 23578888999999855443
No 267
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.29 E-value=3.9 Score=37.47 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=70.2
Q ss_pred ECCCCchHHHHHhhC-----CCccccCChhhhh-------HHHHHHHHHcCCCeEEEEecCCCCC----CCCCCceEEEe
Q 012961 222 VGCGVASFGAYLLSH-----DIIAMSLAPNDVH-------ENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 285 (452)
Q Consensus 222 IGCG~G~~~~~La~~-----~v~~vdis~~dis-------~~~~~~A~~rg~~~~~~~~d~~~lp----~~d~sFDlVv~ 285 (452)
||=|.=+|+..|+.. .+++..+...+.- ...++..++.|..+.+ -.|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEEE
Confidence 455666777777763 3444444332211 1222233344554443 34555553 24578999996
Q ss_pred ccccccccc------c---------HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 286 SRCRIDWLQ------R---------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 286 s~~~l~~~~------d---------~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
++ +|.. . ...+++.+.++|+++|.+.|+...... ...|. ++.+++..|+.++....
T Consensus 82 NF---PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-----y~~W~-i~~lA~~~gl~l~~~~~ 152 (166)
T PF10354_consen 82 NF---PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-----YDSWN-IEELAAEAGLVLVRKVP 152 (166)
T ss_pred eC---CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-----Ccccc-HHHHHHhcCCEEEEEec
Confidence 54 2332 1 133889999999999999998754321 12344 67999999999876653
No 268
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=90.25 E-value=1.7 Score=44.54 Aligned_cols=122 Identities=22% Similarity=0.214 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhCCCcc---ccCChhhhhHHHHHH---HHHcCCC--eEE
Q 012961 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIA---MSLAPNDVHENQIQF---ALERGIP--STL 265 (452)
Q Consensus 194 ~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~~v~~---vdis~~dis~~~~~~---A~~rg~~--~~~ 265 (452)
.|......|++.....+.++. +|||+.+..|+=+..|.+.--.. --+..+|++....+. ..++-.. ..+
T Consensus 137 i~rqeavSmlPvL~L~v~p~~---~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v 213 (375)
T KOG2198|consen 137 IYRQEAVSMLPVLALGVKPGD---KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLV 213 (375)
T ss_pred chhhhhhhccchhhcccCCCC---eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceee
Confidence 345566677876655555554 89999999999888887620000 012233443333222 2233211 222
Q ss_pred EEecCCCCC---------CCCCCceEEEec----cc-ccc---------cc--------ccHHHHHHHHHHhcCCCcEEE
Q 012961 266 GVLGTKRLP---------YPSRSFELAHCS----RC-RID---------WL--------QRDGILLLELDRLLRPGGYFV 314 (452)
Q Consensus 266 ~~~d~~~lp---------~~d~sFDlVv~s----~~-~l~---------~~--------~d~~~~L~ei~RvLkPGG~lv 314 (452)
...++...| .....||-|+|- .. ++. |. .-.-.+|..-.++||+||.++
T Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lV 293 (375)
T KOG2198|consen 214 TNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLV 293 (375)
T ss_pred ecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEE
Confidence 222222221 233469999871 10 010 10 001237888999999999999
Q ss_pred EEeC
Q 012961 315 YSSP 318 (452)
Q Consensus 315 i~~p 318 (452)
.++=
T Consensus 294 YSTC 297 (375)
T KOG2198|consen 294 YSTC 297 (375)
T ss_pred Eecc
Confidence 9873
No 269
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.46 E-value=1 Score=45.99 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=60.4
Q ss_pred CCCEEEEECCC-CchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 215 NIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 215 ~~~~VLDIGCG-~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
+..+|+=+|+| .|.++..++.. .+..+...+.++...+.|++.|....+.-.|.....--.+.||+|+..- .
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-~---- 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-G---- 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC-C----
Confidence 44578888877 34566666653 2345555567777778888887654433222222221113499998543 1
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 294 QRDGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
...+....+.||+||.+++...+
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 34688899999999999998754
No 270
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.19 E-value=8.2 Score=37.05 Aligned_cols=119 Identities=11% Similarity=0.070 Sum_probs=72.1
Q ss_pred EEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEecCCCCCC-CCCCceEEEecccccc
Q 012961 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPY-PSRSFELAHCSRCRID 291 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~rg-~~~~~~~~d~~~lp~-~d~sFDlVv~s~~~l~ 291 (452)
++.||||-.|++..+|.+. .+++.|+.+.-+..+..++.+... ..+....+|.. .++ ++..+|.|+.... .
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl-~~l~~~d~~d~ivIAGM--G 95 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL-AVLELEDEIDVIVIAGM--G 95 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc-cccCccCCcCEEEEeCC--c
Confidence 4999999999999999873 466778877766555444443332 23445555541 123 2347999886542 1
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
-.-...+|++-..-|+.==++++. |... -..+++.+...+|.++..+-
T Consensus 96 -G~lI~~ILee~~~~l~~~~rlILQ-Pn~~---------~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 96 -GTLIREILEEGKEKLKGVERLILQ-PNIH---------TYELREWLSANSYEIKAETI 143 (226)
T ss_pred -HHHHHHHHHHhhhhhcCcceEEEC-CCCC---------HHHHHHHHHhCCceeeeeee
Confidence 111234566666666543355553 2211 24688889999999887654
No 271
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=89.03 E-value=0.66 Score=44.03 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=50.4
Q ss_pred CCEEEEECCCCchHHHHHhh--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC----C----CCCC
Q 012961 216 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----Y----PSRS 279 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~--------~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp----~----~d~s 279 (452)
+..|+|+|.-.|..+.++++ ..|+++|+.-......+++. .-...++.++.+|..+.. . ....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 45899999999877666543 47888888543332222111 001356888888865432 1 1123
Q ss_pred ceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 280 FDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
-.+|+- - .-|...+.-..|+....++++|+|+++.+
T Consensus 112 ~vlVil-D-s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 112 PVLVIL-D-SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SEEEEE-S-S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ceEEEE-C-CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 445553 2 34445666667888999999999999844
No 272
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=88.32 E-value=0.77 Score=49.04 Aligned_cols=123 Identities=13% Similarity=0.103 Sum_probs=74.3
Q ss_pred CCEEEEECCCCchHHHHHhh------C--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 216 IRNVLDVGCGVASFGAYLLS------H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~------~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
...|+=+|+|-|-+.....+ + .+++++-.+..+..-+-..-+.-...+.++..|...++-|..+.|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 55788899999987665543 2 345555555544332211112224568899999999986668899998532
Q ss_pred ccccccccH--HHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 012961 288 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 339 (452)
Q Consensus 288 ~~l~~~~d~--~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~ 339 (452)
+-.+..+. ...|..+.+.|||+|+.+=+.-..|...-.....|.++.+...
T Consensus 448 -LGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a~~~ 500 (649)
T KOG0822|consen 448 -LGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKATND 500 (649)
T ss_pred -hccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHhcCC
Confidence 22222222 5599999999999987763222222222223345666666554
No 273
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=87.29 E-value=0.81 Score=41.75 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=44.8
Q ss_pred CCceEEEeccccccccc--------cH---HHHHHHHHHhcCCCcEEEEEeCCCCCCChhh-HHHHHHHHHHHHhCCCEE
Q 012961 278 RSFELAHCSRCRIDWLQ--------RD---GILLLELDRLLRPGGYFVYSSPEAYAHDPEN-RRIWNAMYDLLKSMCWKI 345 (452)
Q Consensus 278 ~sFDlVv~s~~~l~~~~--------d~---~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~-~~~~~~l~~ll~~~Gf~~ 345 (452)
++||.+.|.. +++|.. |+ ...+.++.++|||||.|+++.|-.-.....+ .+++..+.-.+--.||+.
T Consensus 62 ~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 62 GSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred ccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 6799988655 565531 11 4488999999999999999998543222111 123444443444568887
Q ss_pred EEEE
Q 012961 346 VSKK 349 (452)
Q Consensus 346 v~~~ 349 (452)
+..-
T Consensus 141 i~tf 144 (177)
T PF03269_consen 141 IDTF 144 (177)
T ss_pred Eeee
Confidence 7643
No 274
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=85.11 E-value=7.7 Score=38.36 Aligned_cols=127 Identities=15% Similarity=0.190 Sum_probs=66.6
Q ss_pred EEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCC--CCCceEEEeccccccc---
Q 012961 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP--SRSFELAHCSRCRIDW--- 292 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~--d~sFDlVv~s~~~l~~--- 292 (452)
+++|+-||.|.++..+.+.... -+...|+.+.+++..+..... .+...|...+... ...+|+++.+.---.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 5999999999998877764211 122334445554544444322 2455666655422 2569999975311111
Q ss_pred -----cccH-HHHHHHHHH---hcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 293 -----LQRD-GILLLELDR---LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 293 -----~~d~-~~~L~ei~R---vLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
..+. ..++.++.| .++|. ++++.--..... ......+..+...++++||.+....
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~-~~~~~~~~~i~~~l~~~GY~~~~~~ 142 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLT-HDNGNTLKVILNTLEELGYNVYWKL 142 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhc-cCchHHHHHHHHHHHhCCcEEEEEE
Confidence 1122 224444444 44665 333322111111 1123457888889999999865443
No 275
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.10 E-value=4.1 Score=41.96 Aligned_cols=100 Identities=14% Similarity=0.031 Sum_probs=57.4
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEecCCC-C-----CC-CCCCceEEEec
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-----PY-PSRSFELAHCS 286 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~d~~~-l-----p~-~d~sFDlVv~s 286 (452)
..+||.+|||. |..+..+++.. +. .+...+.++...+.+++.+ .+.++.....+ + .+ ....+|+|+-.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 35799999987 77777777641 22 2333345566667777763 22222111111 1 11 22369999863
Q ss_pred ccc--------------ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 287 RCR--------------IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 287 ~~~--------------l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
... ++-..+....+.++.+.|+++|.+++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 210 00012335578999999999999998753
No 276
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=84.06 E-value=2.7 Score=42.04 Aligned_cols=103 Identities=16% Similarity=0.097 Sum_probs=62.4
Q ss_pred CCCEEEEECCCCchHHHHHhhC-CCccccCChhhhhHHHHHHHHH---------cCCCeEEEEecCCCC--CCCCCCceE
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALE---------RGIPSTLGVLGTKRL--PYPSRSFEL 282 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~-~v~~vdis~~dis~~~~~~A~~---------rg~~~~~~~~d~~~l--p~~d~sFDl 282 (452)
+++++|=||-|.|.+.+....+ .|-.+.+-. +.+..++..++ .+.++.+..+|...+ ..+.++||+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~e--iD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCE--IDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeeh--hhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 4568999999999988877764 222233222 22333332222 145677777773322 234689999
Q ss_pred EEecccccccccc----HHHHHHHHHHhcCCCcEEEEEeCCC
Q 012961 283 AHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 283 Vv~s~~~l~~~~d----~~~~L~ei~RvLkPGG~lvi~~p~~ 320 (452)
|+.-.+ -...+. .+.++..+.+.||+||++++..-..
T Consensus 199 ii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 199 IITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 985321 111111 1447888999999999999876433
No 277
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.45 E-value=7.8 Score=35.01 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=42.9
Q ss_pred CCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHc-CCCeEEEEecCCCCCCCCCCceEEE
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAH 284 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~r-g~~~~~~~~d~~~lp~~d~sFDlVv 284 (452)
+..+.+|+|.|.|.+-...++. .-+|+++.+.-+..+....-++- +....|..-|.....+.+-.+=+|+
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviF 145 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIF 145 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEe
Confidence 3457999999999987777763 45677777766554443332221 3345666667666665543344443
No 278
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=82.77 E-value=7.7 Score=37.84 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=61.9
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCC----CCCCceEEEe
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY----PSRSFELAHC 285 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~----~d~sFDlVv~ 285 (452)
+..+||=+|+++|..-....+ .-|++++++...- ...+..|++| .++.-++-|+.. |. .-.-.|+|++
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkR-tNiiPIiEDArh-P~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKR-TNIIPIIEDARH-PAKYRMLVGMVDVIFA 232 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhcc-CCceeeeccCCC-chheeeeeeeEEEEec
Confidence 345899999999987777765 2567777766432 3335666665 344444455432 21 1135777774
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
- +........+..+..-.||+||.|+++..
T Consensus 233 D---vaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 233 D---VAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred c---CCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 3 22223335577788999999999999864
No 279
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.07 E-value=2.1 Score=41.34 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCEEEEECCCCchHHHHHhhC-------------CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC--------
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------- 274 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-------------~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp-------- 274 (452)
..+++|+.+..|+++..|.++ .|+++|+.+... -..+.-+++|.....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----------I~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----------IEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----------cCceEEeecccCCHhHHHHHHHH
Confidence 458999999999999998752 155555543221 011233344433221
Q ss_pred CCCCCceEEEeccc----cccccccH------HHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHh
Q 012961 275 YPSRSFELAHCSRC----RIDWLQRD------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 340 (452)
Q Consensus 275 ~~d~sFDlVv~s~~----~l~~~~d~------~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~ 340 (452)
|..+.-|+|+|-.+ .+|-+.+. -.+|.-...+|||||.|+--. .+.......+..+..++++
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi----fRg~~tslLysql~~ff~k 182 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI----FRGRDTSLLYSQLRKFFKK 182 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh----hccCchHHHHHHHHHHhhc
Confidence 44457888888431 23322221 225667778999999998422 1222222234556666554
No 280
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=81.56 E-value=4.1 Score=45.43 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=45.0
Q ss_pred EEEEecCCC-CCCCCCCceEEEeccccccccccH----HHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHH
Q 012961 264 TLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 338 (452)
Q Consensus 264 ~~~~~d~~~-lp~~d~sFDlVv~s~~~l~~~~d~----~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll 338 (452)
.+..+|+.+ ++--...||+++.-. +.=..++ ..+++++.|+++|||.|+-.+. -..++.-+
T Consensus 150 ~l~~gd~~~~~~~~~~~~d~~~lD~--FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~------------a~~vr~~l 215 (662)
T PRK01747 150 DLWFGDANELLPQLDARADAWFLDG--FAPAKNPDMWSPNLFNALARLARPGATLATFTS------------AGFVRRGL 215 (662)
T ss_pred EEEecCHHHHHHhccccccEEEeCC--CCCccChhhccHHHHHHHHHHhCCCCEEEEeeh------------HHHHHHHH
Confidence 345566433 221124699998532 1111222 5599999999999999995321 13577889
Q ss_pred HhCCCEEEEE
Q 012961 339 KSMCWKIVSK 348 (452)
Q Consensus 339 ~~~Gf~~v~~ 348 (452)
..+||++.+.
T Consensus 216 ~~~GF~v~~~ 225 (662)
T PRK01747 216 QEAGFTVRKV 225 (662)
T ss_pred HHcCCeeeec
Confidence 9999987654
No 281
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=81.55 E-value=1.5 Score=37.31 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=17.8
Q ss_pred CCCEEEEECCCCchHHHHHhhC
Q 012961 215 NIRNVLDVGCGVASFGAYLLSH 236 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~ 236 (452)
+.....|||||.|.+.--|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E 79 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE 79 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC
Confidence 3446999999999988888765
No 282
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.38 E-value=6.2 Score=42.69 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=59.5
Q ss_pred CCCEEEEECCCCch-HHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC-----------CC--------
Q 012961 215 NIRNVLDVGCGVAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-----------LP-------- 274 (452)
Q Consensus 215 ~~~~VLDIGCG~G~-~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~-----------lp-------- 274 (452)
.+.+|+=+|||.-. .+...+.. .|.++...|.++..++.+++.|.. +...+..+ +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCe--EEEeccccccccccchhhhcchhHHHHHH
Confidence 46799999999754 44444442 233455557777777888776644 22222111 10
Q ss_pred --CCC--CCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 275 --YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 275 --~~d--~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+.+ +.+|+|+... ...-...+..+.+++.+.+||||.++...-
T Consensus 240 ~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 240 ALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3599998654 232222333446999999999999997653
No 283
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=79.80 E-value=6.4 Score=38.97 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=53.0
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCC------CCCCCCceEEEeccc
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL------PYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~l------p~~d~sFDlVv~s~~ 288 (452)
..+||..|+| .|..+..++... +..+...+.++...+.+++.+....+. ..... ....+.+|+|+....
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~D~vid~~g 241 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLN--SLDDSPKDKKAAGLGGGFDVIFDFVG 241 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEc--CCCcCHHHHHHHhcCCCceEEEECCC
Confidence 3478888876 366666666631 223333344555566666655432211 11110 123457998874321
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
....+.++.+.|+++|.++...
T Consensus 242 -------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 242 -------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEC
Confidence 1347889999999999999765
No 284
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=79.80 E-value=16 Score=39.38 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhh---CCCccccCChhhhhHHHHHHHHHc----CCC--eE
Q 012961 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----GIP--ST 264 (452)
Q Consensus 194 ~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~---~~v~~vdis~~dis~~~~~~A~~r----g~~--~~ 264 (452)
...+.+.+++.. ....+|+|-.||+|++.....+ +...-+.+.+.++.......|+-. +.+ +.
T Consensus 173 ~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 173 EVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred HHHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 445556666653 2334899999999987665543 111012334444444444444432 333 45
Q ss_pred EEEecCCCCCC-----CCCCceEEEecccc--ccccc----------------------cHHHHHHHHHHhcCCCcEEEE
Q 012961 265 LGVLGTKRLPY-----PSRSFELAHCSRCR--IDWLQ----------------------RDGILLLELDRLLRPGGYFVY 315 (452)
Q Consensus 265 ~~~~d~~~lp~-----~d~sFDlVv~s~~~--l~~~~----------------------d~~~~L~ei~RvLkPGG~lvi 315 (452)
+...|+..-|. ..+.||.|+++.-. -.|.. ....+++.+...|+|||+..|
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 55555444442 23679999874210 11110 114589999999999998888
Q ss_pred EeCCC
Q 012961 316 SSPEA 320 (452)
Q Consensus 316 ~~p~~ 320 (452)
+.|..
T Consensus 325 vl~~g 329 (489)
T COG0286 325 VLPDG 329 (489)
T ss_pred EecCC
Confidence 87764
No 285
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=78.92 E-value=1.1 Score=44.45 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=26.4
Q ss_pred CceEEEeccccccccccHHHH-HHHHHHhcCCCcEEEEEeCCCC
Q 012961 279 SFELAHCSRCRIDWLQRDGIL-LLELDRLLRPGGYFVYSSPEAY 321 (452)
Q Consensus 279 sFDlVv~s~~~l~~~~d~~~~-L~ei~RvLkPGG~lvi~~p~~~ 321 (452)
.||+|.++...+. ......+ ......+++++|.+++..-..|
T Consensus 196 ~ydlIlsSetiy~-~~~~~~~~~~~r~~l~~~D~~~~~aAK~~y 238 (282)
T KOG2920|consen 196 HYDLILSSETIYS-IDSLAVLYLLHRPCLLKTDGVFYVAAKKLY 238 (282)
T ss_pred chhhhhhhhhhhC-cchhhhhHhhhhhhcCCccchhhhhhHhhc
Confidence 6888888763322 2333333 5667778888998887654443
No 286
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=76.76 E-value=5.4 Score=39.88 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=43.8
Q ss_pred CCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCC-CCCChhhHHH-HHHHHHHHHhCCCEEE
Q 012961 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRI-WNAMYDLLKSMCWKIV 346 (452)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~-~~~~~~~~~~-~~~l~~ll~~~Gf~~v 346 (452)
+-||+|+.+....|++.. ++.++++|+|.|++-+... ..-..+.... -+.+.++++.+||+.+
T Consensus 221 ~~Fd~ifvs~s~vh~L~p------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKP------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred CCCCEEEEhhhhHhhcch------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 679999987765554332 4888999999999976421 2222333333 3689999999999754
No 287
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=76.73 E-value=3.8 Score=38.12 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=34.5
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCC-CEEEEEEeceeEeecc
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVSKKDQTVIWAKP 358 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~G-f~~v~~~~~~~iw~kp 358 (452)
|..-....+.++.|+|||||.+++......... .....+.+..| |... ...+|.|+
T Consensus 31 y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~----~~iiW~K~ 87 (231)
T PF01555_consen 31 YLEWMEEWLKECYRVLKPGGSIFIFIDDREIAG-------FLFELALEIFGGFFLR----NEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECT-------HHHHHHHHHHTT-EEE----EEEEEE-S
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEecchhhhH-------HHHHHHHHHhhhhhee----ccceeEec
Confidence 333446689999999999999998765443221 12334445556 8665 35688887
No 288
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=76.73 E-value=9.1 Score=38.59 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=51.9
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEe--cCCCCCCCCCCceEEEecccccc
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVL--GTKRLPYPSRSFELAHCSRCRID 291 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~--d~~~lp~~d~sFDlVv~s~~~l~ 291 (452)
..+||=+||| .|.++..++.. .+. .+...+.++...+.+++.|....+... +..++.-..+.||+|+-...
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 4578888875 23444444442 122 233334556667788777654322111 11111111235898875431
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
. ...+....++|++||.+++...
T Consensus 245 ---~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467888999999999998763
No 289
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=75.75 E-value=12 Score=38.86 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=50.5
Q ss_pred ChhhhhHHHHHHHHHcCCCeEEEEecCCCC--CCCCCCceEEEeccccccccccH--HHHHHHHHHhcCCCcEEEEEe
Q 012961 244 APNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 244 s~~dis~~~~~~A~~rg~~~~~~~~d~~~l--p~~d~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvi~~ 317 (452)
-|.-+.+..-+..+.+...+.++..++.+. ..++++||.++.+. ...|+++. ...++++.+.++|||++++-.
T Consensus 258 ~P~YL~~e~f~~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D-~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 258 CPPYLRPENFEALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSD-HMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CChhhcHhHHHHHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecc-hhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 344444444344444445567777665443 24578999999777 68887654 568999999999999999865
No 290
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=74.58 E-value=18 Score=36.11 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchHHHHHh--h--CCCccccCChhhhhHHHHHHHHHcCCC-eEEEEecCCCCCCCC---CCceEEEec
Q 012961 215 NIRNVLDVGCGVASFGAYLL--S--HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPS---RSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La--~--~~v~~vdis~~dis~~~~~~A~~rg~~-~~~~~~d~~~lp~~d---~sFDlVv~s 286 (452)
.++.|+=+| -.-..+.+++ . ..|..+|++..-+.-- -+.|.+.|.+ +...+.|+.. |+|+ +.||+++.-
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi-~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFI-EKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHH-HHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecC
Confidence 345689888 3333333332 2 3566677665544222 2456666766 7777777644 4443 679988743
Q ss_pred cccccccccHHHHHHHHHHhcCCC---cEEEEEeCCCCCCChhhHHHHHHHHH-HHHhCCCEEEE
Q 012961 287 RCRIDWLQRDGILLLELDRLLRPG---GYFVYSSPEAYAHDPENRRIWNAMYD-LLKSMCWKIVS 347 (452)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPG---G~lvi~~p~~~~~~~~~~~~~~~l~~-ll~~~Gf~~v~ 347 (452)
- .+-+.....++..=...||-- |++-++. .......|.+++. +..++||-+..
T Consensus 229 P--peTi~alk~FlgRGI~tLkg~~~aGyfgiT~------ressidkW~eiQr~lIn~~gvVITd 285 (354)
T COG1568 229 P--PETIKALKLFLGRGIATLKGEGCAGYFGITR------RESSIDKWREIQRILINEMGVVITD 285 (354)
T ss_pred c--hhhHHHHHHHHhccHHHhcCCCccceEeeee------ccccHHHHHHHHHHHHHhcCeeeHh
Confidence 2 222334455777777778766 8888864 3345567999998 88999996644
No 291
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=73.61 E-value=22 Score=34.99 Aligned_cols=100 Identities=17% Similarity=0.277 Sum_probs=60.2
Q ss_pred CCEEEEECCCCchHHHHHhh--------CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEecC----CCCCCCCCCceE
Q 012961 216 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGT----KRLPYPSRSFEL 282 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~--------~~v~~vdis~~dis~~~~~~A~~r-g~~~~~~~~d~----~~lp~~d~sFDl 282 (452)
.-+++|+|+|+..=++.|.+ ...+.+|++..-+...+.+.+++. +.++.-..+|. ..+| ...=-+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 44799999999987777765 245567776665555555555443 34444444442 2223 222233
Q ss_pred EEeccccc-cccccH-HHHHHHHHHhcCCCcEEEEEe
Q 012961 283 AHCSRCRI-DWLQRD-GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 283 Vv~s~~~l-~~~~d~-~~~L~ei~RvLkPGG~lvi~~ 317 (452)
++...+.+ ++.+++ ..+|..+...|+||-++++..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 32222223 333333 559999999999999999865
No 292
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=70.98 E-value=10 Score=35.84 Aligned_cols=99 Identities=9% Similarity=0.041 Sum_probs=62.7
Q ss_pred CCCEEEEECCCCchHHHHHhh--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCC------CCCCc
Q 012961 215 NIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY------PSRSF 280 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~--------~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~------~d~sF 280 (452)
.++.|+++|.-.|..+.+.+. ..|+++|++-....+++++ ...+.++.++..+... ..+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 455899999999987776664 2566777765555444422 4567777777544321 01223
Q ss_pred eEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 281 DlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
--|+.....-|.+...-..|+-..++|..|-|+++.+.
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 23433333456555556678888899999999998663
No 293
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=68.93 E-value=48 Score=34.39 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=54.7
Q ss_pred CCCEEEEECCCCch----HHHHHhhC-------CCccccC----ChhhhhH---HHHHHHHHcCCCeEEEEe---cCCCC
Q 012961 215 NIRNVLDVGCGVAS----FGAYLLSH-------DIIAMSL----APNDVHE---NQIQFALERGIPSTLGVL---GTKRL 273 (452)
Q Consensus 215 ~~~~VLDIGCG~G~----~~~~La~~-------~v~~vdi----s~~dis~---~~~~~A~~rg~~~~~~~~---d~~~l 273 (452)
..-.|+|+|.|.|. +...|+.+ +|++++. ....+.+ ...++|+..|++..|... +.+.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 44589999999994 44555542 4667766 3323322 234567777888777663 23333
Q ss_pred C-----CCCCCceEEEecccccccccc-------HHHHHHHHHHhcCCCcEEEE
Q 012961 274 P-----YPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVY 315 (452)
Q Consensus 274 p-----~~d~sFDlVv~s~~~l~~~~d-------~~~~L~ei~RvLkPGG~lvi 315 (452)
. ..++..=+|-|.+ .+|++.+ +...+-...|.|+|.-.+++
T Consensus 190 ~~~~l~~~~~E~laVn~~~-~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMF-QLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred CHHHhCccCCcEEEEEeeh-hhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 1 2222222233333 4565531 23345567778999854444
No 294
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=67.15 E-value=19 Score=33.97 Aligned_cols=92 Identities=22% Similarity=0.192 Sum_probs=50.8
Q ss_pred CCCEEEEECCCC-chHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC-------CCCCCceEEEec
Q 012961 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------YPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGCG~-G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp-------~~d~sFDlVv~s 286 (452)
+..+||-+|+|. |..+..++.. .+..+...+.++...+.+++.+....+ +..... ...+.+|+|+..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKA--AGARVIVTDRSDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 345899999985 5555555543 122333333344444555555432111 111111 123569999854
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
.. . ...+..+.+.|+++|.++....
T Consensus 209 ~~-~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VG-G------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CC-C------HHHHHHHHHhcccCCEEEEEcc
Confidence 31 1 1457778899999999997654
No 295
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=66.54 E-value=14 Score=39.08 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC---CCccccCChhhhhHHHHHHHHHcCC
Q 012961 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI 261 (452)
Q Consensus 194 ~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg~ 261 (452)
+|...|...+......+..+ ...|||||.|||.++.+...+ .++++++...+.. .++++..+.|-
T Consensus 47 ky~~gi~~tIte~kh~~~~g--kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d-~arkI~~kng~ 114 (636)
T KOG1501|consen 47 KYRLGIEKTITEPKHVLDIG--KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVD-LARKIMHKNGM 114 (636)
T ss_pred HHHHHHHHHhcccceeccCc--eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHH-HHHHHHhcCCC
Confidence 34444544444333222222 236999999999988877653 4666665554442 22344444443
No 296
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=65.87 E-value=23 Score=35.05 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
..+||-+|+| .|..+..+++. .++.+.....++...+.+++.+....+...+.....-..+.+|+++... ..
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~--~~--- 235 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV--VS--- 235 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC--Cc---
Confidence 3578888886 55555555553 2333433344555556665545322211110000000124689887532 11
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEe
Q 012961 295 RDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
...+.++.+.|+++|.++...
T Consensus 236 --~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 236 --GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --HHHHHHHHHhcccCCEEEEEC
Confidence 246788899999999999765
No 297
>KOG2730 consensus Methylase [General function prediction only]
Probab=65.80 E-value=3.2 Score=39.85 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=41.1
Q ss_pred CEEEEECCCCchHHHHHhh--CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEecCCCC----CCCCCCceEEEec
Q 012961 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL----PYPSRSFELAHCS 286 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~~~~~~A~~rg~--~~~~~~~d~~~l----p~~d~sFDlVv~s 286 (452)
..|+|.-||.|.-+...+. ..|+++|+++.-+.-+. ..|+--|+ ++.|+++|..++ .+....+|+|+.+
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak-hNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR-HNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred chhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh-ccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 3699999999987777665 36778887776542221 22222243 477888885443 2333335566543
No 298
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=65.17 E-value=9.9 Score=33.11 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=38.9
Q ss_pred CCceEEEeccccccccccH----HHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEe
Q 012961 278 RSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (452)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~----~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (452)
..||+|+.-. +.-..++ ..+++++.++++|||.+.-.+- -..++.-+.++||.+.+...
T Consensus 49 ~~~Da~ylDg--FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~------------a~~Vr~~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 49 ARFDAWYLDG--FSPAKNPELWSEELFKKLARLSKPGGTLATYSS------------AGAVRRALQQAGFEVEKVPG 111 (124)
T ss_dssp T-EEEEEE-S--S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------BHHHHHHHHHCTEEEEEEE-
T ss_pred ccCCEEEecC--CCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec------------hHHHHHHHHHcCCEEEEcCC
Confidence 5688887532 1111222 5699999999999999885221 13588899999999876553
No 299
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=65.07 E-value=7.9 Score=39.84 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=17.3
Q ss_pred CCEEEEECCCCchHHHHHhh
Q 012961 216 IRNVLDVGCGVASFGAYLLS 235 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~ 235 (452)
+..++|||.|.|.++..++.
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~ 97 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILR 97 (370)
T ss_pred CceEEEeCCCcChHHHHHHH
Confidence 45799999999999888875
No 300
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=64.66 E-value=12 Score=40.60 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=55.2
Q ss_pred CCCEEEEECCCCc-hHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC---------------------
Q 012961 215 NIRNVLDVGCGVA-SFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR--------------------- 272 (452)
Q Consensus 215 ~~~~VLDIGCG~G-~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~--------------------- 272 (452)
++.+||=+|+|.- ..+..++.. .+.++...|.+....+.+++.+. .++..+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~lGa--~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQSMGA--EFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCC--eEEeccccccccccccceeecCHHHHHHHH
Confidence 4568999999975 444444432 12223333445555566665443 332222111
Q ss_pred --CCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEE
Q 012961 273 --LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (452)
Q Consensus 273 --lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi 315 (452)
++-.-..+|+|++.- .++-.+.+..+.+++.+.+|||+.++-
T Consensus 239 ~~~~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 110124699998654 455444555688999999999999873
No 301
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=64.36 E-value=89 Score=32.54 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=54.9
Q ss_pred EEEEECCCCchHHHHHhhCCCccccCChhhhh-HHHHHHHHHcCCCeE-EEEecCCCCCCCCCCceEEEeccccccccc-
Q 012961 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH-ENQIQFALERGIPST-LGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~~v~~vdis~~dis-~~~~~~A~~rg~~~~-~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~- 294 (452)
.||=|+=..|.++..|+...+..+ +..-++ .+..+.++..+.+.. +...+... +++ +.+|+|+. .+..
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~-~~~-~~~d~vl~-----~~PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDSTA-DYP-QQPGVVLI-----KVPKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeecccc-ccc-CCCCEEEE-----EeCCC
Confidence 599999999999999996554432 222233 333344444455432 22222221 233 45999873 2322
Q ss_pred --cHHHHHHHHHHhcCCCcEEEEEe
Q 012961 295 --RDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 295 --d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
..+..|..+.++|.||+.++...
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 22447888999999999987654
No 302
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=63.00 E-value=30 Score=34.42 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=49.3
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEec---CCCCCCCCCCceEEEeccccc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLG---TKRLPYPSRSFELAHCSRCRI 290 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~d---~~~lp~~d~sFDlVv~s~~~l 290 (452)
..+||-.|||. |..+..+++.. ++ .+...+.++...+.+++.+... +.... ...+....+.+|+|+.... .
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~~~~vd~vld~~g-~ 241 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAMGADE-TVNLARDPLAAYAADKGDFDVVFEASG-A 241 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCCCE-EEcCCchhhhhhhccCCCccEEEECCC-C
Confidence 45788888764 55555555531 22 2223334444545555555322 11111 1112112235999985431 1
Q ss_pred cccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
...++++.+.|+++|.++...
T Consensus 242 ------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 ------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ------HHHHHHHHHHHhcCCEEEEEe
Confidence 236788999999999999754
No 303
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=62.45 E-value=36 Score=34.20 Aligned_cols=89 Identities=18% Similarity=0.090 Sum_probs=50.4
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
..+||=.|+| .|.++..+++. .+..+...+.++...+.+++.|....+ +.... ..+.+|+++-... .
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~~Ga~~vi---~~~~~--~~~~~d~~i~~~~-~---- 233 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALALGAASAG---GAYDT--PPEPLDAAILFAP-A---- 233 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHhCCceec---ccccc--CcccceEEEECCC-c----
Confidence 4589988975 23344444443 122233334455566788877754322 11111 1245887653221 1
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 295 RDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
...+....++|++||.+++...
T Consensus 234 --~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 --GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred --HHHHHHHHHhhCCCcEEEEEec
Confidence 2468889999999999998663
No 304
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=61.56 E-value=34 Score=33.79 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=49.0
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecCCCC----CCCCCCceEEEecccc
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~~~l----p~~d~sFDlVv~s~~~ 289 (452)
..+||-+|+| .|..+..+++.. ++. +.....+......+.+.+.. .+...+.... ....+.+|+|+....
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~~~~~- 235 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVIEATG- 235 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEEECCC-
Confidence 4578989864 244444455431 222 22222334444555555543 1211111110 113356999985421
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
....+.++.+.|+++|.++....
T Consensus 236 ------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 ------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ------ChHHHHHHHHHHhcCCEEEEEec
Confidence 12478888999999999987653
No 305
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=61.14 E-value=6.8 Score=33.23 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=52.8
Q ss_pred CCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCC-----C-CCCCCceEEEeccccccccccHHH
Q 012961 225 GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCSRCRIDWLQRDGI 298 (452)
Q Consensus 225 G~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~l-----p-~~d~sFDlVv~s~~~l~~~~d~~~ 298 (452)
|.|.++..++.. .+..+...+.++..++.+++.|....+. .+..++ . ...+.+|+|+-... -..
T Consensus 1 ~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~~~~~Ga~~~~~-~~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKA--MGAKVIATDRSEEKLELAKELGADHVID-YSDDDFVEQIRELTGGRGVDVVIDCVG-------SGD 70 (130)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHTTESEEEE-TTTSSHHHHHHHHTTTSSEEEEEESSS-------SHH
T ss_pred ChHHHHHHHHHH--cCCEEEEEECCHHHHHHHHhhccccccc-ccccccccccccccccccceEEEEecC-------cHH
Confidence 457777777764 1244445566777778888877332221 111111 1 23357999974321 145
Q ss_pred HHHHHHHhcCCCcEEEEEeCC
Q 012961 299 LLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 299 ~L~ei~RvLkPGG~lvi~~p~ 319 (452)
.+++...+|+++|.+++..-.
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHhccCCEEEEEEcc
Confidence 899999999999999997644
No 306
>PRK10742 putative methyltransferase; Provisional
Probab=60.97 E-value=27 Score=34.21 Aligned_cols=68 Identities=15% Similarity=0.051 Sum_probs=41.0
Q ss_pred EEEEECCCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHc-------C----CCeEEEEecCCCC-CCCCCCceEE
Q 012961 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-------G----IPSTLGVLGTKRL-PYPSRSFELA 283 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~r-------g----~~~~~~~~d~~~l-p~~d~sFDlV 283 (452)
+|||+=+|.|..+..++.. .|+.++-++....- ++...++ + .++.+...|...+ .-...+||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaal--L~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAAL--LDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHH--HHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 7999999999999999864 56667666653321 2222121 1 2355566664332 2122479999
Q ss_pred Eecc
Q 012961 284 HCSR 287 (452)
Q Consensus 284 v~s~ 287 (452)
+.--
T Consensus 169 YlDP 172 (250)
T PRK10742 169 YLDP 172 (250)
T ss_pred EECC
Confidence 9654
No 307
>PHA01634 hypothetical protein
Probab=60.76 E-value=31 Score=30.52 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCchHHHHHhh---CCCccccCCh
Q 012961 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAP 245 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~---~~v~~vdis~ 245 (452)
..++|+|||++.|..+.+++- +.|++++..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 456899999999999988874 3566665544
No 308
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.85 E-value=27 Score=35.26 Aligned_cols=123 Identities=12% Similarity=0.229 Sum_probs=63.2
Q ss_pred EEEECCCCchHHHHHhhCCCccccC-ChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCC-CCCceEEEeccccccc----
Q 012961 219 VLDVGCGVASFGAYLLSHDIIAMSL-APNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDW---- 292 (452)
Q Consensus 219 VLDIGCG~G~~~~~La~~~v~~vdi-s~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~-d~sFDlVv~s~~~l~~---- 292 (452)
|+|+-||.|.+..-|.+.. .++ ...|+.+.+.+.-+..... .+...|+.++... -..+|+++...---.|
T Consensus 1 vidLF~G~GG~~~Gl~~aG---~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag 76 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG---FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAG 76 (315)
T ss_pred CEEEecCccHHHHHHHHcC---CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhc
Confidence 5899999999988887652 222 2234444444444433322 3445666555321 1248988763210001
Q ss_pred ----cccH-HHHHHHHHHhc---CCCcEEEEEe-CCCCCCChhhHHHHHHHHHHHHhCCCEEEEE
Q 012961 293 ----LQRD-GILLLELDRLL---RPGGYFVYSS-PEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (452)
Q Consensus 293 ----~~d~-~~~L~ei~RvL---kPGG~lvi~~-p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 348 (452)
..+. ..++.++.|++ +|. ++++.- +..... .....+..+...++.+||.+...
T Consensus 77 ~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~--~~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 77 KRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSH--DKGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred ccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhc--ccchHHHHHHHHHHhCCCEEEEE
Confidence 1222 23555555554 674 333321 111111 11235677888889999987544
No 309
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.59 E-value=36 Score=34.72 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=59.9
Q ss_pred CCCCEEEEECCCC-chHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC---------CCCCCceEE
Q 012961 214 GNIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---------YPSRSFELA 283 (452)
Q Consensus 214 ~~~~~VLDIGCG~-G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp---------~~d~sFDlV 283 (452)
+.+.+||=+|+|. |..+...++. +-+.++.-.|+.+..++.|++-|..+........... +....||+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka-~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKA-MGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHH-cCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 3456899999996 4444444442 2234555557778888999887765544333222111 222458877
Q ss_pred EeccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 284 v~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+-.. .+ +..++.....||.||.+++...
T Consensus 247 ~dCs-G~------~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 247 FDCS-GA------EVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred EEcc-Cc------hHHHHHHHHHhccCCEEEEecc
Confidence 6332 12 3567888899999999888763
No 310
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=59.29 E-value=25 Score=35.56 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=50.4
Q ss_pred CCEEEEECCCC-chHHHHHhhC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCC--CCCCCCceEEEecccc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~---~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~l--p~~d~sFDlVv~s~~~ 289 (452)
..+||=+|+|. |.++..+++. .|++++- .+.++...+.+++.|.. .......++ ....+.||+|+-...
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~--~~~~~~~~~~~~~~Ga~--~v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNR--RDPPDPKADIVEELGAT--YVNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEec--CCCCHHHHHHHHHcCCE--EecCCccchhhhhhcCCCCEEEECcC-
Confidence 34788888763 4555555543 2333322 12245566777776643 221111110 001246898875431
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
. ...+.+..++|++||.+++..
T Consensus 248 -----~-~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 -----V-PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred -----C-HHHHHHHHHHccCCcEEEEEe
Confidence 1 236888999999999998765
No 311
>PTZ00357 methyltransferase; Provisional
Probab=58.78 E-value=39 Score=37.91 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=57.9
Q ss_pred CEEEEECCCCchHHHHHhhC--------CCccccCChhhhhHHHHHHHH-Hc--------CCCeEEEEecCCCCCCCC--
Q 012961 217 RNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFAL-ER--------GIPSTLGVLGTKRLPYPS-- 277 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~--------~v~~vdis~~dis~~~~~~A~-~r--------g~~~~~~~~d~~~lp~~d-- 277 (452)
..|+=+|+|-|-+....++. .|++++-.+..+--...+... +. |..+.++..|...+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999766555431 344444442211111111111 11 234788888887774331
Q ss_pred ---------CCceEEEeccccccccccH--HHHHHHHHHhcCC----CcEE----EEEeCCCC
Q 012961 278 ---------RSFELAHCSRCRIDWLQRD--GILLLELDRLLRP----GGYF----VYSSPEAY 321 (452)
Q Consensus 278 ---------~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkP----GG~l----vi~~p~~~ 321 (452)
+.+|+||+-. +=.|-.+. .+.|..+.+.||+ +|++ .|+.|..|
T Consensus 782 ~s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSY 843 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQY 843 (1072)
T ss_pred ccccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhccccccccCCcceecchhh
Confidence 3699999532 22232222 4588888888887 7864 24555544
No 312
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=57.49 E-value=22 Score=36.47 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=44.5
Q ss_pred CCCEEEEECCCCchHHHHHhh--CCCccccCChhhhhH---HH---HHHHHHcCC---CeEEEEecCCCCCCC-CCCceE
Q 012961 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHE---NQ---IQFALERGI---PSTLGVLGTKRLPYP-SRSFEL 282 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis~---~~---~~~A~~rg~---~~~~~~~d~~~lp~~-d~sFDl 282 (452)
++..|+|-=-|||++....+. +-|+|.||+..++.. +. ...-++-|. -+.+..+|...-|+- ...||.
T Consensus 208 pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDa 287 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDA 287 (421)
T ss_pred CCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeE
Confidence 445899999999987766654 567888887776651 11 111112231 245567776665543 357999
Q ss_pred EEe
Q 012961 283 AHC 285 (452)
Q Consensus 283 Vv~ 285 (452)
|+|
T Consensus 288 Ivc 290 (421)
T KOG2671|consen 288 IVC 290 (421)
T ss_pred EEe
Confidence 999
No 313
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=56.58 E-value=13 Score=38.62 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=55.2
Q ss_pred CEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHH----cCCC---eEEEEecCCCCC-CCCCCceEEEeccc
Q 012961 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE----RGIP---STLGVLGTKRLP-YPSRSFELAHCSRC 288 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~----rg~~---~~~~~~d~~~lp-~~d~sFDlVv~s~~ 288 (452)
.+|||.=+|+|.=+...+..--....+..+|+++.+++..++ ++.. +.+...|+..+- .....||+|=.
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl--- 127 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL--- 127 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE---
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe---
Confidence 479999999997665555320011233444555555444433 3433 456666755442 23577999962
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
.=...+..+|..+.+.++.||+|.++..
T Consensus 128 --DPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 --DPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred --CCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 2224456799999999999999999874
No 314
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=56.39 E-value=53 Score=32.52 Aligned_cols=92 Identities=9% Similarity=0.046 Sum_probs=51.8
Q ss_pred CCEEEEECC--CCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCC-----CCCCCCceEEEeccc
Q 012961 216 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGC--G~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~l-----p~~d~sFDlVv~s~~ 288 (452)
..+||=.|. |.|.++..+++. .+..+.....++...+.+++.|....+...+...+ ....+.+|+|+-...
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~--~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G 216 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG 216 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence 457888884 466777777664 13333333445555677766665322211111111 011246898874321
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
...+....++|++||.++...
T Consensus 217 --------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 217 --------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred --------HHHHHHHHHHhCcCcEEEEec
Confidence 235688899999999999764
No 315
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=55.92 E-value=31 Score=34.82 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=41.7
Q ss_pred CCEEEEECCCCchHHHHHhhC----CCccccCChhhhhHHHHHHHHHc----CCCeEEEEecCCCCC-----CCCCCceE
Q 012961 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP-----YPSRSFEL 282 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~----~v~~vdis~~dis~~~~~~A~~r----g~~~~~~~~d~~~lp-----~~d~sFDl 282 (452)
+..++|.=+|.|..+..+++. .|+++|.++.. ++.++++ +.++.++..+..++. ....++|.
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~A-----l~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDg 95 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQA-----IAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDG 95 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHH-----HHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccE
Confidence 348999999999999998864 45666655544 4444432 235666666654432 12346888
Q ss_pred EEec
Q 012961 283 AHCS 286 (452)
Q Consensus 283 Vv~s 286 (452)
|+..
T Consensus 96 Il~D 99 (305)
T TIGR00006 96 ILVD 99 (305)
T ss_pred EEEe
Confidence 8763
No 316
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=55.65 E-value=16 Score=38.02 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCchHHHHHhh---CCCccccCC
Q 012961 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLA 244 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~---~~v~~vdis 244 (452)
....|.|+|.|.|.++..|.= ..|.++|-+
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 455799999999999999874 345555544
No 317
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=53.99 E-value=2.2e+02 Score=27.82 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=57.9
Q ss_pred CCEEEEECCCCchHHHHHhhC-CCccccCChhhhhHHHHHHHHHc----CCCeEEEEecCCC-CC--CCCCCc----eEE
Q 012961 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKR-LP--YPSRSF----ELA 283 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~-~v~~vdis~~dis~~~~~~A~~r----g~~~~~~~~d~~~-lp--~~d~sF----DlV 283 (452)
...|+.+|||-=.-...|... .+.-.+++-.++-+...+...+. ..+..++..|+.. +. +....| -.+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 447999999988777776532 23344443333322222233321 2234555556431 10 111122 234
Q ss_pred EeccccccccccH--HHHHHHHHHhcCCCcEEEEEeC
Q 012961 284 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 284 v~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+...+++.|++.. ..+++.+.+...||+.+++...
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 4466678887554 5689999998889999998653
No 318
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=53.91 E-value=26 Score=25.44 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCEEEEEEeceeEeecccch
Q 012961 331 WNAMYDLLKSMCWKIVSKKDQTVIWAKPISN 361 (452)
Q Consensus 331 ~~~l~~ll~~~Gf~~v~~~~~~~iw~kp~~~ 361 (452)
|+++..++++.||........-.+|.++...
T Consensus 1 ~~el~k~L~~~G~~~~r~~GSH~~~~~~~~~ 31 (56)
T PF07927_consen 1 WRELIKLLEKAGFEEVRQKGSHHIFRHPGGR 31 (56)
T ss_dssp -HHHHHHHHHTT-EEEEEETTEEEEE-TTS-
T ss_pred ChHHHHHHHHCCCEEecCCCCEEEEEeCCCC
Confidence 6789999999999999777777788777655
No 319
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=52.09 E-value=26 Score=28.92 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=47.8
Q ss_pred EEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccccHH
Q 012961 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~ 297 (452)
+|| +-||.|.-+..+++ .+.+.+.++|.++.+...+..+++-....+|+|+... ...
T Consensus 5 ~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~p-------qi~ 61 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAP-------QVA 61 (95)
T ss_pred EEE-EECCCchhHHHHHH---------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECc-------hHH
Confidence 566 66898865554433 3346677888888887777655532234689998653 122
Q ss_pred HHHHHHHHhcCCCcE-EEEEeCCCC
Q 012961 298 ILLLELDRLLRPGGY-FVYSSPEAY 321 (452)
Q Consensus 298 ~~L~ei~RvLkPGG~-lvi~~p~~~ 321 (452)
-.+.++...+.+-|. +....+..|
T Consensus 62 ~~~~~i~~~~~~~~ipv~~I~~~~Y 86 (95)
T TIGR00853 62 YMLPDLKKETDKKGIPVEVINGAQY 86 (95)
T ss_pred HHHHHHHHHhhhcCCCEEEeChhhc
Confidence 356666666655433 333333333
No 320
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=51.99 E-value=60 Score=32.86 Aligned_cols=93 Identities=10% Similarity=0.048 Sum_probs=52.4
Q ss_pred CCCEEEEECC--CCchHHHHHhhCCCccccCChhhhhHHHHHHHH-HcCCCeEEEEecCCCC-----CCCCCCceEEEec
Q 012961 215 NIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRL-----PYPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGC--G~G~~~~~La~~~v~~vdis~~dis~~~~~~A~-~rg~~~~~~~~d~~~l-----p~~d~sFDlVv~s 286 (452)
+..+||=.|+ |.|.++..+++. .+..+...+.++...+.++ +.|....+...+...+ ....+.+|+|+-.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~--~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKL--HGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 3457888887 367777777764 2333333344455556555 4554322211100011 0112468988743
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.. ...+..+.++|++||.+++..
T Consensus 236 vG--------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 236 VG--------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CC--------HHHHHHHHHHhccCCEEEEEC
Confidence 21 246788899999999999765
No 321
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=51.98 E-value=54 Score=31.43 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=48.6
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
..+||=.|+|. |..+..+++. .++. +...+.+....+.+++.+....+. ....-......+|+|+... ..
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~--~g~~~vi~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~d~vl~~~--~~-- 169 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKA--AGAREVVGVDPDAARRELAEALGPADPVA--ADTADEIGGRGADVVIEAS--GS-- 169 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCcEEEECCCHHHHHHHHHcCCCcccc--ccchhhhcCCCCCEEEEcc--CC--
Confidence 44788888753 4444444443 1223 333344555556666665111111 1111011234689888432 11
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 294 QRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
...+.+..+.|+++|.++...
T Consensus 170 ---~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 170 ---PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ---hHHHHHHHHHhcCCcEEEEEe
Confidence 236788899999999998754
No 322
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=51.53 E-value=45 Score=35.56 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=52.5
Q ss_pred CCCEEEEECCCCch--HHHHHhh----CCCccccCChhhhhHHHHHHH--HHcCCCeEE-EEecCCCCCCCC-CCceEEE
Q 012961 215 NIRNVLDVGCGVAS--FGAYLLS----HDIIAMSLAPNDVHENQIQFA--LERGIPSTL-GVLGTKRLPYPS-RSFELAH 284 (452)
Q Consensus 215 ~~~~VLDIGCG~G~--~~~~La~----~~v~~vdis~~dis~~~~~~A--~~rg~~~~~-~~~d~~~lp~~d-~sFDlVv 284 (452)
.+..++|+|.|.|. ++..+.- ..+..||-+..+......+.- .+.|-...- .+.--..+|.+. +.||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 44578999888764 3333332 234445444443322211111 011111000 112234456544 4499999
Q ss_pred eccccccccccHH---HHH-HHHHHhcCCCcEEEEEeCCC
Q 012961 285 CSRCRIDWLQRDG---ILL-LELDRLLRPGGYFVYSSPEA 320 (452)
Q Consensus 285 ~s~~~l~~~~d~~---~~L-~ei~RvLkPGG~lvi~~p~~ 320 (452)
|++. +++..... ... .-..+..++||++++..+..
T Consensus 280 ~ah~-l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHK-LHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeee-eeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 9995 44443331 133 33455678999999987654
No 323
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=51.20 E-value=55 Score=33.09 Aligned_cols=93 Identities=14% Similarity=0.055 Sum_probs=50.7
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecCCCC-----C-CCCCCceEEEecc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~~~l-----p-~~d~sFDlVv~s~ 287 (452)
..+||=+|||. |.++..+++. .+.. +...+.++...+.+++.|....+ .....+. . .....+|+|+-..
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWAREFGATHTV-NSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHcCCceEE-cCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 45788888752 3444445543 2332 33334556667777776643211 1111110 0 1223589887432
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
. . ...+.+..+.|++||.+++...
T Consensus 254 g------~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 254 G------R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred C------C-HHHHHHHHHHhccCCEEEEECC
Confidence 1 1 2357778899999999998753
No 324
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=50.17 E-value=46 Score=32.78 Aligned_cols=122 Identities=12% Similarity=0.203 Sum_probs=66.3
Q ss_pred EEEEECCCCchHHHHHhhCC---CccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC---CCCCCceEEEecc----
Q 012961 218 NVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSR---- 287 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~~---v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp---~~d~sFDlVv~s~---- 287 (452)
+++|+=||.|.+..-|.+.. +.++|+ .+.+.+.-+.... .....|...+. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~-----~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEI-----DPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEES-----SHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeec-----CHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCce
Confidence 69999999999988887753 334444 4444444333322 66777776664 443 599998742
Q ss_pred -cccc---ccccH-HHH---HHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEE
Q 012961 288 -CRID---WLQRD-GIL---LLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (452)
Q Consensus 288 -~~l~---~~~d~-~~~---L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 349 (452)
+... -..|. ..+ +.++.+.++|.-.++=-++.... ......+..+...++++||.+....
T Consensus 74 fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~--~~~~~~~~~i~~~l~~lGY~v~~~v 141 (335)
T PF00145_consen 74 FSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLS--SKNGEVFKEILEELEELGYNVQWRV 141 (335)
T ss_dssp TSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGT--GGGHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EeccccccccccccchhhHHHHHHHhhccceEEEecccceeec--cccccccccccccccccceeehhcc
Confidence 1111 11222 113 33445556885444422222211 1222467888999999999875443
No 325
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=49.98 E-value=46 Score=32.39 Aligned_cols=92 Identities=20% Similarity=0.125 Sum_probs=49.3
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecC----CCCCCCCCCceEEEecccc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT----KRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~----~~lp~~d~sFDlVv~s~~~ 289 (452)
..+||=+|+|. |.++..+++. .+.. +...+.++...+.+++.|....+...+. ..+. ....+|+|+-...
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~--~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid~~G- 196 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAA--AGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALEFSG- 196 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEECCC-
Confidence 34788888752 3344444442 1222 2222445556677777665322211110 0111 1235898874321
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
....+.++.++|+++|.+++..
T Consensus 197 ------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 197 ------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred ------ChHHHHHHHHHhcCCCEEEEec
Confidence 1246888899999999999765
No 326
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=48.89 E-value=38 Score=35.04 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=59.5
Q ss_pred CCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHc-----CCCeEEEEecCCCCCCC-CCCceEEEecccc
Q 012961 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYP-SRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~r-----g~~~~~~~~d~~~lp~~-d~sFDlVv~s~~~ 289 (452)
..+|||.=+|+|.=+...+.. ...+.+.-+|+++.+++.++++ +.+..+...|+-.+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E-~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVE-TGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhh-cCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe-----
Confidence 458999999999877777642 0111334445555555554432 33444444554333221 25688774
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+.=...+..++....+.++.||++.++..
T Consensus 127 iDPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 127 IDPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred cCCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 22234456689999999999999999764
No 327
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=48.32 E-value=49 Score=32.79 Aligned_cols=81 Identities=22% Similarity=0.179 Sum_probs=44.8
Q ss_pred CEEEEECCC-CchHHHHHhhC---C-CccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccc
Q 012961 217 RNVLDVGCG-VASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (452)
Q Consensus 217 ~~VLDIGCG-~G~~~~~La~~---~-v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~ 291 (452)
.++|=+||| .|.++..+++. . |.++ +..+..++.|.... ..+.... ....||+|+-...
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~-----~~~~~rl~~a~~~~------~i~~~~~--~~~g~Dvvid~~G--- 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVW-----ETNPRRRDGATGYE------VLDPEKD--PRRDYRAIYDASG--- 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEe-----CCCHHHHHhhhhcc------ccChhhc--cCCCCCEEEECCC---
Confidence 368878876 35565656552 2 2222 33334444443221 1121111 1246898875431
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
. ...+..+.+.|++||.+++..
T Consensus 210 ---~-~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 ---D-PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ---C-HHHHHHHHHhhhcCcEEEEEe
Confidence 1 246788899999999999865
No 328
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=47.68 E-value=9.9 Score=31.59 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhccccCC
Q 012961 22 LISVLGLVCLYYGSTSAP 39 (452)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ 39 (452)
.+++||+++|++|.+|+.
T Consensus 4 w~l~Lc~~SF~~G~lft~ 21 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTN 21 (95)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356778888888888885
No 329
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=46.61 E-value=7.2 Score=39.14 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=76.9
Q ss_pred cccccceeec--CceeecCCCCCCCcccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHH-HHhh---CCCc
Q 012961 166 KSDQHWMVVN--GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA-YLLS---HDII 239 (452)
Q Consensus 166 ~~~~~W~~~~--g~~~~F~g~g~~f~~~~~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~-~La~---~~v~ 239 (452)
-++..|+..- |-+..|...-++|..|--.--.++..+.. .+..|.|+=+|.|+|+. .|.. +.|.
T Consensus 153 ~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc----------~~eviVDLYAGIGYFTlpflV~agAk~V~ 222 (351)
T KOG1227|consen 153 YGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSC----------DGEVIVDLYAGIGYFTLPFLVTAGAKTVF 222 (351)
T ss_pred cccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhccc----------ccchhhhhhcccceEEeehhhccCccEEE
Confidence 4677787655 44566666777777775444444443333 22479999999999998 5543 3678
Q ss_pred cccCChhhhhHHHHHHHHHcCCC--eEEEEecCCCCCCCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcE
Q 012961 240 AMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGY 312 (452)
Q Consensus 240 ~vdis~~dis~~~~~~A~~rg~~--~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~ 312 (452)
+++..+-.+ ++.++.++..+.. ..+..+|. +.+-++...|-|... .++.-+.-.-.+..+|||.|-
T Consensus 223 A~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd~-R~~~~~~~AdrVnLG-----LlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 223 ACEWNPWSV-EALRRNAEANNVMDRCRITEGDN-RNPKPRLRADRVNLG-----LLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred EEecCHHHH-HHHHHHHHhcchHHHHHhhhccc-cccCccccchheeec-----cccccccchHHHHHHhhhcCC
Confidence 888887654 3443444433221 12233333 334455777877632 334444555666778887655
No 330
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=46.37 E-value=48 Score=27.23 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=47.2
Q ss_pred ECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccccHHHHHH
Q 012961 222 VGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL 301 (452)
Q Consensus 222 IGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~~L~ 301 (452)
+-||.|.-+..+++ ...+.+.+++.++.+...+.....-....+|+|+++- ...-.+.
T Consensus 4 ~~Cg~G~sTS~~~~---------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~P-------qv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVK---------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGP-------QVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEECh-------hHHHHHH
Confidence 44888865554433 2346677888888887777655532235699998653 2233566
Q ss_pred HHHHhcCC-CcEEEEEeCCCCC
Q 012961 302 ELDRLLRP-GGYFVYSSPEAYA 322 (452)
Q Consensus 302 ei~RvLkP-GG~lvi~~p~~~~ 322 (452)
++.+.+.+ +--+.+..+..|.
T Consensus 62 ~i~~~~~~~~~pv~~I~~~~Y~ 83 (96)
T cd05564 62 EVKKKAAEYGIPVAVIDMMDYG 83 (96)
T ss_pred HHHHHhccCCCcEEEcChHhcc
Confidence 77765544 4445555555553
No 331
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.96 E-value=43 Score=27.97 Aligned_cols=76 Identities=18% Similarity=0.096 Sum_probs=50.7
Q ss_pred EEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccccHHH
Q 012961 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298 (452)
Q Consensus 219 VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d~~~ 298 (452)
|| +-||.|..+..+++ .+.+.++++|.++.+......+++-....+|+|+... ...-
T Consensus 3 Il-l~C~~GaSSs~la~---------------km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~P-------Qv~~ 59 (99)
T cd05565 3 VL-VLCAGGGTSGLLAN---------------ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAP-------QMAS 59 (99)
T ss_pred EE-EECCCCCCHHHHHH---------------HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcC-------hHHH
Confidence 44 55788855544443 3457788899998888777666654445699887543 2334
Q ss_pred HHHHHHHhcCCCcEEEEEe
Q 012961 299 LLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 299 ~L~ei~RvLkPGG~lvi~~ 317 (452)
.+.++...+.+-|.-+...
T Consensus 60 ~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 60 YYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred HHHHHHHHhhhcCCCEEEe
Confidence 6788888888887755443
No 332
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=45.67 E-value=66 Score=32.40 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=48.7
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecC--CCC-----CC-CCCCce----E
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT--KRL-----PY-PSRSFE----L 282 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~--~~l-----p~-~d~sFD----l 282 (452)
..+||=+|+|. |..+..++.. .+..+...+.++...+.+++.|....+...+. .++ .+ ....+| +
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~--~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~ 244 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKA--MGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWK 244 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCE
Confidence 45899999853 4444555543 12233333455666677777665322211110 000 00 112344 4
Q ss_pred EEeccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 283 Vv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
|+-.. .. ...+....++|++||++++...
T Consensus 245 v~d~~------g~-~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 245 IFECS------GS-KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EEECC------CC-hHHHHHHHHHHhcCCeEEEECc
Confidence 54211 11 2467778889999999998653
No 333
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=45.50 E-value=91 Score=31.56 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=65.3
Q ss_pred CEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCC---CCCCceEEEecccccc--
Q 012961 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSRCRID-- 291 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~---~d~sFDlVv~s~~~l~-- 291 (452)
.+++|+=||-|.+..-+.......+ ...++.+.+++.-+.+.....+...|...+.. ....+|+++...---.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~--~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIV--FANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEE--EEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 3799999999998887776432211 12233444434333333323444455443321 1116899987421111
Q ss_pred ------ccccHH-H---HHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCE
Q 012961 292 ------WLQRDG-I---LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (452)
Q Consensus 292 ------~~~d~~-~---~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~ 344 (452)
...|.. . -+.++...++| -.|++---...... ....|+.+.+.+++.||.
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~--~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSS--KGQTFDEIKKELEELGYG 141 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhc--CchHHHHHHHHHHHcCCc
Confidence 112221 1 35566666788 44554322211111 334788999999999997
No 334
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=45.36 E-value=61 Score=32.64 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=46.7
Q ss_pred CCEEEEECCCC-chHHHHHhhC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~-----~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~ 289 (452)
..+||=+|||. |.++..++.+ .|++++ .++..++.+++.+. .... + .+. .+..+|+|+-.-..
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~-----~~~~k~~~a~~~~~--~~~~-~--~~~-~~~g~d~viD~~G~ 232 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFG-----KHQEKLDLFSFADE--TYLI-D--DIP-EDLAVDHAFECVGG 232 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEe-----CcHhHHHHHhhcCc--eeeh-h--hhh-hccCCcEEEECCCC
Confidence 45899999863 3344443331 244443 44455566654322 1111 1 111 11248988743210
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
......+.+..++|++||.+++..
T Consensus 233 ----~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 233 ----RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ----CccHHHHHHHHHhCcCCcEEEEEe
Confidence 001347888999999999999765
No 335
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.16 E-value=17 Score=38.95 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=59.0
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHc----CCC--eEEEEecCCCC----CCCCCCceEEE
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP--STLGVLGTKRL----PYPSRSFELAH 284 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~r----g~~--~~~~~~d~~~l----p~~d~sFDlVv 284 (452)
+.-+|||.=|++|.-+...+..---..++...|.+++.+...++. +.. +.....|+..+ +-.+..||+|.
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 345799999999987777765311123444455555555433322 111 12233333222 22346799997
Q ss_pred eccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
. -.| ..+..+|..+.+.++.||.|+++..
T Consensus 189 L----DPy-Gs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 189 L----DPY-GSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred c----CCC-CCccHHHHHHHHHhhcCCEEEEEec
Confidence 3 222 3345699999999999999999764
No 336
>PRK10458 DNA cytosine methylase; Provisional
Probab=45.01 E-value=3e+02 Score=29.60 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhhC
Q 012961 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH 236 (452)
Q Consensus 193 ~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~~ 236 (452)
......+.++++..... .....-+++|+=||.|.+..-+-..
T Consensus 67 ~~~~~~~~~~~~~~~~~--~~~~~~~~iDLFsGiGGl~lGfe~a 108 (467)
T PRK10458 67 EAEFAHLQTLLPKPPAH--HPHYAFRFIDLFAGIGGIRRGFEAI 108 (467)
T ss_pred HHHHHHHHHhcccCccc--CcCCCceEEEeCcCccHHHHHHHHc
Confidence 33444566666532211 1122458999999999998888764
No 337
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=44.51 E-value=58 Score=33.13 Aligned_cols=92 Identities=18% Similarity=0.146 Sum_probs=50.0
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEecCCCC-----CCCCCCceEEEeccc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~d~~~l-----p~~d~sFDlVv~s~~ 288 (452)
..+||=+|+|. |.++..+++. .+. .+...+.++...+.+++.|....+.. ...++ ....+.+|+|+-...
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~-~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVA--AGASQVVAVDLNEDKLALARELGATATVNA-GDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHHcCCceEeCC-CchhHHHHHHHHhCCCCCEEEECCC
Confidence 34677788752 3444445542 122 23333556666777777665322211 11110 011235898874321
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
....+....++|+++|.+++..
T Consensus 269 -------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 269 -------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEc
Confidence 0246788889999999999765
No 338
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=43.09 E-value=83 Score=31.20 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=49.6
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCceEEEec
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAHCS 286 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp--------~~d~sFDlVv~s 286 (452)
..+||-.|+|. |..+..+++. .++.+.....++...+..++.+... +. +..... .++..+|+|+..
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~~g~~~-v~--~~~~~~~~~~l~~~~~~~~vd~vld~ 234 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARELGADD-TI--NVGDEDVAARLRELTDGEGADVVIDA 234 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHhCCCE-Ee--cCcccCHHHHHHHHhCCCCCCEEEEC
Confidence 34788888763 5566666653 1233322233444555555555321 11 111111 133469999854
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.. ....+.++.+.|+++|.++...
T Consensus 235 ~g-------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 235 TG-------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CC-------CHHHHHHHHHHHhcCCEEEEEc
Confidence 21 1246888999999999998654
No 339
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=42.84 E-value=58 Score=32.99 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=53.4
Q ss_pred CCEEEEEC--CCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEE--EecC-CCC-CC-CCCCceEEEeccc
Q 012961 216 IRNVLDVG--CGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLG--VLGT-KRL-PY-PSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIG--CG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~--~~d~-~~l-p~-~d~sFDlVv~s~~ 288 (452)
..+||=.| .|.|.++..|++.. +..+.....+.+..+.+++.|....+. ..|. +.+ .. ....+|+|+..-.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC
Confidence 45788888 45678888888752 111111122333344666666543222 1110 011 11 2246999986432
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
...+.+..+.|+++|.++....
T Consensus 221 --------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 221 --------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred --------HHHHHHHHHHhccCCEEEEEec
Confidence 4578889999999999998654
No 340
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=42.77 E-value=73 Score=31.71 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=48.9
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecC--CCC-CC-CCCCceEEEecccc
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT--KRL-PY-PSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~--~~l-p~-~d~sFDlVv~s~~~ 289 (452)
..+||=+|+| .|.++..+++. .+.. +...+.++...+.+++.|....+...+. ..+ .. ....+|+|+-...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARA--LGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 3477778864 23333444442 1222 3333445566677776664322111110 001 01 2236999984321
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
....+....+.|+++|.+++...
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 ------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 12356778899999999997653
No 341
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=42.15 E-value=1e+02 Score=30.20 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=51.7
Q ss_pred CCEEEEECC--CCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCC-----CCCCCCceEEEeccc
Q 012961 216 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGC--G~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~l-----p~~d~sFDlVv~s~~ 288 (452)
+.+||=.|. |.|.++..+++. .++.+.....++...+.+++.|....+. ....++ ....+.+|+|+-...
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~~~~gvd~vld~~g 220 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKELGFDAVFN-YKTVSLEEALKEAAPDGIDCYFDNVG 220 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHcCCCEEEe-CCCccHHHHHHHHCCCCcEEEEECCC
Confidence 457887774 456666666653 2333433344555566776666432221 111111 011246898874321
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
...+.+..+.|+++|.++...
T Consensus 221 --------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 --------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred --------HHHHHHHHHhhccCCEEEEEc
Confidence 246789999999999998754
No 342
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=40.80 E-value=68 Score=31.81 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCceEEEe
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAHC 285 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp--------~~d~sFDlVv~ 285 (452)
..+||-.|+| .|..+..+++.. +. .+...+.+....+.+++.+... + .+..... .+.+.+|+|+.
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~--g~~~v~~~~~~~~~~~~~~~~g~~~-v--i~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLL--GAARIIAVDSNPERLDLAKEAGATD-I--INPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHhCCcE-E--EcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 4578887764 345555555431 21 2222233344445555444221 1 1111110 12356998884
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
... - ...+.++.+.|+++|.++...
T Consensus 243 ~~g-~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVG-F------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccC-C------HHHHHHHHHHhhcCCEEEEEc
Confidence 321 1 247888899999999998654
No 343
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=39.81 E-value=81 Score=26.53 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=50.6
Q ss_pred EEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCC--CCCCceEEEecccccccccc
Q 012961 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY--PSRSFELAHCSRCRIDWLQR 295 (452)
Q Consensus 218 ~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~--~d~sFDlVv~s~~~l~~~~d 295 (452)
+|| +-||.|..+..+++. +.+.++++|.++.+...+..+++- ....||+|++.. +
T Consensus 3 kIL-lvCg~G~STSlla~k---------------~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P-------Q 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK---------------TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP-------Q 59 (104)
T ss_pred EEE-EECCCchHHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh-------H
Confidence 355 568888766555442 246677888888877777655532 234699998653 2
Q ss_pred HHHHHHHHHHhcCCCcE-EEEEeCCCCC
Q 012961 296 DGILLLELDRLLRPGGY-FVYSSPEAYA 322 (452)
Q Consensus 296 ~~~~L~ei~RvLkPGG~-lvi~~p~~~~ 322 (452)
..-.+.++...+.+.|. +.+..+..|.
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 23357777777766554 5555555554
No 344
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=38.64 E-value=1.2e+02 Score=30.19 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=51.0
Q ss_pred CCCEEEEECC--CCchHHHHHhhCCCccccCChhhhhHHHHHHHHH-cCCCeEEEEecCCCC-----CCCCCCceEEEec
Q 012961 215 NIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRL-----PYPSRSFELAHCS 286 (452)
Q Consensus 215 ~~~~VLDIGC--G~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~-rg~~~~~~~~d~~~l-----p~~d~sFDlVv~s 286 (452)
++.+||=.|+ |.|.++..+++. .++.+.....+....+.+++ .|....+...+...+ ....+.+|+|+-.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~--~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKL--KGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 3457888886 456666666653 23333333344555566655 454322210110010 0112468988743
Q ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.. ...+.+..+.|+++|.++...
T Consensus 229 ~g--------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 VG--------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CC--------HHHHHHHHHHhccCcEEEEec
Confidence 21 246788999999999999754
No 345
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=38.42 E-value=64 Score=22.34 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 012961 16 TYVLLGLISVLGLVCLYYGS 35 (452)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~ 35 (452)
+-.+..++++..+..||||+
T Consensus 13 Vgtv~G~~vi~lvglFfYGs 32 (40)
T PF01788_consen 13 VGTVAGIAVIGLVGLFFYGS 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHheecc
Confidence 33444455555556677777
No 346
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=38.28 E-value=1.2e+02 Score=33.66 Aligned_cols=58 Identities=16% Similarity=0.309 Sum_probs=40.5
Q ss_pred CCCEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
+..+|| +-||+|.-+..+.+ ....+..+++|.++++.+.+..+.+-....+|+|+++.
T Consensus 505 k~mKIL-vaCGsGiGTStmva--------------~kIkk~Lke~GI~veV~~~~Vsev~s~~~~aDIIVtt~ 562 (602)
T PRK09548 505 KPVRIL-AVCGQGQGSSMMMK--------------MKIKKYLDKRGIPIIMDSCAVNDYKGKLETIDIIVCSK 562 (602)
T ss_pred cccEEE-EECCCCchHHHHHH--------------HHHHHHHHHcCCCeEEEEechHhCcccCCCCCEEEEcc
Confidence 445677 56888865555443 22335667788888888888888876556799999865
No 347
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=38.06 E-value=21 Score=34.30 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCchHHHHHh---h---CCCccccCChhhhh
Q 012961 214 GNIRNVLDVGCGVASFGAYLL---S---HDIIAMSLAPNDVH 249 (452)
Q Consensus 214 ~~~~~VLDIGCG~G~~~~~La---~---~~v~~vdis~~dis 249 (452)
+.+-++.|-.||.|++...+. . .+|++.||++..+.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~ 91 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALE 91 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHH
Confidence 456689999999998766553 2 25666766655543
No 348
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=38.05 E-value=47 Score=30.65 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCchHHHHHhh--CCCccccCChh
Q 012961 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPN 246 (452)
Q Consensus 193 ~~y~~~l~~~l~~~~~~l~~~~~~~~VLDIGCG~G~~~~~La~--~~v~~vdis~~ 246 (452)
...++.+.++.. .++..|||.=||+|+.+.+... +..+++|+.+.
T Consensus 178 ~~l~~~lI~~~t---------~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~ 224 (231)
T PF01555_consen 178 VELIERLIKAST---------NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE 224 (231)
T ss_dssp HHHHHHHHHHHS----------TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH
T ss_pred HHHHHHHHHhhh---------ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHH
Confidence 445555555544 2345899999999987766654 55677766543
No 349
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=37.93 E-value=97 Score=25.52 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=57.3
Q ss_pred CCCchHHHHHhhC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCC----CCCCCceEEEeccccccccccHH
Q 012961 224 CGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHCSRCRIDWLQRDG 297 (452)
Q Consensus 224 CG~G~~~~~La~~--~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp----~~d~sFDlVv~s~~~l~~~~d~~ 297 (452)
||.|.++..+++. . -+.++.-.+..+..++.+++.+ ..+..+|..+.. ..-...|.|++... .....
T Consensus 4 ~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n 76 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTD----DDEEN 76 (116)
T ss_dssp ES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHH
T ss_pred EcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEccC----CHHHH
Confidence 5667777777651 0 1123333355555667777776 556677755432 12246888876431 11223
Q ss_pred HHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEE
Q 012961 298 ILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (452)
Q Consensus 298 ~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 346 (452)
..+....|-+.|...++..... ++..+.++++|...+
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~------------~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVND------------PENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESS------------HHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHCCCCeEEEEECC------------HHHHHHHHHCCcCEE
Confidence 3566677888888888876532 234566677776443
No 350
>PLN02740 Alcohol dehydrogenase-like
Probab=37.24 E-value=1e+02 Score=31.56 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=49.3
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEecCC-CC-----CCCCCCceEEEecc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-----PYPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~d~~-~l-----p~~d~sFDlVv~s~ 287 (452)
..+||=+|+|. |..+..+++. .+. .+...+.++...+.+++.|....+...+.. .+ ....+.+|+|+-..
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 45788888752 3333444442 222 233334556667777776653322111100 01 01122699887533
Q ss_pred ccccccccHHHHHHHHHHhcCCC-cEEEEEe
Q 012961 288 CRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPG-G~lvi~~ 317 (452)
. . ...+....+.+++| |.+++..
T Consensus 277 G------~-~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 277 G------N-VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred C------C-hHHHHHHHHhhhcCCCEEEEEc
Confidence 1 1 24677888899997 9888765
No 351
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=37.13 E-value=65 Score=33.99 Aligned_cols=89 Identities=11% Similarity=-0.022 Sum_probs=48.9
Q ss_pred CCCEEEEECCCC-chHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 215 ~~~~VLDIGCG~-G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
.+++|+=+|+|. |.....++.. .+..+.-.+.++.....|.+.|... . +..+. . ..+|+|+....
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d~~R~~~A~~~G~~~--~--~~~e~-v--~~aDVVI~atG----- 266 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVDPICALQAAMEGYEV--M--TMEEA-V--KEGDIFVTTTG----- 266 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECChhhHHHHHhcCCEE--c--cHHHH-H--cCCCEEEECCC-----
Confidence 345899999996 4444434332 1222333344455556666655421 1 11111 1 35799986432
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 294 QRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
....+-.+..+.+|+||+++....
T Consensus 267 -~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 267 -NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred -CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 222233445899999999998764
No 352
>COG4093 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.81 E-value=28 Score=34.96 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=25.9
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhccccC
Q 012961 3 QKSEQQIRTSKQLTYVLLGLISVLGLVCLYYGSTSA 38 (452)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (452)
-..+++..+|||++.+++.++++.++ |.+++|-
T Consensus 4 sa~a~~~~~rkr~~wl~i~ivv~~g~---ySaGWFy 36 (338)
T COG4093 4 SAKAPQSATRKRLFWLVIAIVVLIGA---YSAGWFY 36 (338)
T ss_pred cccCCCCccccchhHHHHHHHHHHHH---hcchHhh
Confidence 34566778899999999988888754 7777776
No 353
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=35.95 E-value=1.4e+02 Score=29.83 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=47.4
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecCCC-------C--CCCCCCceEEE
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKR-------L--PYPSRSFELAH 284 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~~~-------l--p~~d~sFDlVv 284 (452)
..+||=.|+|. |..+..+++. .+.. +....-++.....+++.+....+. ..... + ......+|+|+
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~--~G~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~~~~~~~~~~~d~vl 239 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKA--FGATKVVVTDIDPSRLEFAKELGATHTVN-VRTEDTPESAEKIAELLGGKGPDVVI 239 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHcCCcEEec-cccccchhHHHHHHHHhCCCCCCEEE
Confidence 34677777653 4455555553 2222 222223344445555444332111 11111 0 12335599998
Q ss_pred eccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
-... . ...+.+..+.|+++|.++...
T Consensus 240 d~~g-~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 240 ECTG-A------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred ECCC-C------HHHHHHHHHHhhcCCEEEEEc
Confidence 4321 1 236888999999999998765
No 354
>PRK11524 putative methyltransferase; Provisional
Probab=35.81 E-value=1.1e+02 Score=30.34 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCchHHHHHh--hCCCccccCChhhh
Q 012961 215 NIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDV 248 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La--~~~v~~vdis~~di 248 (452)
++..|||-=||+|+.+.... +++.+|+|+++.-.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~ 243 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYI 243 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHH
Confidence 45589999999998766554 46788887766433
No 355
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=35.66 E-value=68 Score=32.65 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=23.1
Q ss_pred CceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 279 sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.+|+|+-... . ...+.+..++|++||.+++..
T Consensus 247 ~~D~vid~~g------~-~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 247 TMDYIIDTVS------A-VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCCEEEECCC------C-HHHHHHHHHHhcCCcEEEEeC
Confidence 4888874321 1 236788899999999999765
No 356
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=35.63 E-value=69 Score=26.23 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=27.5
Q ss_pred ECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 222 VGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 222 IGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
+-||+|.-+..++. ....+...++|.++.+...+...++-....+|+|++..
T Consensus 7 vvCgsG~~TS~m~~--------------~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 7 VACGGAVATSTMAA--------------EEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred EECCCchhHHHHHH--------------HHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECC
Confidence 44888865554432 12224445566666666655544432114578777543
No 357
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=35.01 E-value=23 Score=22.65 Aligned_cols=18 Identities=44% Similarity=0.962 Sum_probs=15.3
Q ss_pred cCCCCCCCCCCcccCCCC
Q 012961 120 RHCPPPERRYNCLVPPPK 137 (452)
Q Consensus 120 r~C~~~~~~~~clv~~P~ 137 (452)
-|||+++-++.-+.|.|+
T Consensus 5 a~~pppeislna~fptpp 22 (32)
T PF07629_consen 5 ADCPPPEISLNARFPTPP 22 (32)
T ss_pred CCCCCCcceeccccCCCh
Confidence 589998888888888876
No 358
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=34.27 E-value=1.6e+02 Score=29.15 Aligned_cols=90 Identities=7% Similarity=0.068 Sum_probs=49.2
Q ss_pred CEEEEECC--CCchHHHHHhhCCCccc-cCChhhhhHHHHHHHHH-cCCCeEEEEecCCCC-----CCCCCCceEEEecc
Q 012961 217 RNVLDVGC--GVASFGAYLLSHDIIAM-SLAPNDVHENQIQFALE-RGIPSTLGVLGTKRL-----PYPSRSFELAHCSR 287 (452)
Q Consensus 217 ~~VLDIGC--G~G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~-rg~~~~~~~~d~~~l-----p~~d~sFDlVv~s~ 287 (452)
.+||=.|+ |.|..+..+++. .+. .+.....++...+.+++ .|....+. .....+ ....+.+|+|+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~--~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~-~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRL--LGCSRVVGICGSDEKCQLLKSELGFDAAIN-YKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHhcCCcEEEE-CCCCCHHHHHHHHCCCCceEEEECC
Confidence 57888886 466666666653 132 23333344555555544 45432221 111111 01124699998532
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
. ...+.+..+.|+++|.++...
T Consensus 233 g--------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G--------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--------cHHHHHHHHHhccCCEEEEEe
Confidence 1 123578899999999999754
No 359
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=34.14 E-value=1.5e+02 Score=29.35 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=47.8
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecC---CCC-CC-CCCCceEEEeccc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT---KRL-PY-PSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~---~~l-p~-~d~sFDlVv~s~~ 288 (452)
..+||-.|+|. |..+..+++. .++. +.....+....+.+.+.+.. .+..... ..+ .. +...+|+|+...
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~--~G~~~v~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~vld~~- 235 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKI--LGAKRVIAVDIDDEKLAVARELGAD-DTINPKEEDVEKVRELTEGRGADLVIEAA- 235 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHcCCC-EEecCccccHHHHHHHhCCCCCCEEEECC-
Confidence 34788888654 4455555543 2332 33333334444555544432 1111110 000 11 223599998432
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.....+..+.+.|+++|.++...
T Consensus 236 ------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 ------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 01346788999999999998765
No 360
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=33.97 E-value=53 Score=31.91 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=36.1
Q ss_pred CEEEEECCCCchHHHHHhh--CCCccccCChhhhh--HHHHHHHHHc-CC------CeEEEEecCCC-CCCCCCCceEEE
Q 012961 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVH--ENQIQFALER-GI------PSTLGVLGTKR-LPYPSRSFELAH 284 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~--~~v~~vdis~~dis--~~~~~~A~~r-g~------~~~~~~~d~~~-lp~~d~sFDlVv 284 (452)
.+|||.=+|-|.-+..++. ..|++++-++.... ...++.+.+. .. ++.++..|..+ |..++++||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 3899999999987776663 56777777665321 1111222221 11 35677777544 455678999999
Q ss_pred ecc
Q 012961 285 CSR 287 (452)
Q Consensus 285 ~s~ 287 (452)
.--
T Consensus 157 ~DP 159 (234)
T PF04445_consen 157 FDP 159 (234)
T ss_dssp E--
T ss_pred ECC
Confidence 754
No 361
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=33.95 E-value=1.5e+02 Score=30.22 Aligned_cols=93 Identities=22% Similarity=0.186 Sum_probs=55.7
Q ss_pred EEEEECCCC-chHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC------CCCCC-CCceEEEecccc
Q 012961 218 NVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR------LPYPS-RSFELAHCSRCR 289 (452)
Q Consensus 218 ~VLDIGCG~-G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~------lp~~d-~sFDlVv~s~~~ 289 (452)
+|+=+|||. |.++..+++. .-+..+...|.++..++.|++.+....+ .....+ +.... ..||+|+=.-.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~-~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGGADVV-VNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhCCCeEe-ecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 899999996 6666555542 1112233336677778888874322211 111111 01112 36999874432
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
....+..+.+++||||.+++..-.
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 134899999999999999987643
No 362
>PRK13699 putative methylase; Provisional
Probab=33.19 E-value=1.1e+02 Score=29.28 Aligned_cols=34 Identities=24% Similarity=0.086 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCchHHHHHhh--CCCccccCChhhh
Q 012961 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDV 248 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~--~~v~~vdis~~di 248 (452)
++..|||-=||+|+.+....+ +..+|+++++.-.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~ 198 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYH 198 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHH
Confidence 345899999999987776654 5778888776544
No 363
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=32.95 E-value=1.4e+02 Score=29.88 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=46.8
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecC--CCC--CCCCCCce-EEEeccc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT--KRL--PYPSRSFE-LAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~--~~l--p~~d~sFD-lVv~s~~ 288 (452)
..+||=+|+|. |.++..+++. .+.. +...+.++...+.+++.|....+...+. ..+ -.....+| +|+-..
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~- 237 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVA--LGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA- 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC-
Confidence 45788888753 3333444442 1222 2222344555566666554221111100 000 01223577 555221
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.. ...+.+..+.|++||.+++..
T Consensus 238 -----G~-~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 238 -----GV-PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred -----CC-HHHHHHHHHHhhcCCEEEEEc
Confidence 11 347888999999999999875
No 364
>PLN02827 Alcohol dehydrogenase-like
Probab=32.35 E-value=1.4e+02 Score=30.68 Aligned_cols=93 Identities=11% Similarity=-0.016 Sum_probs=48.0
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEecC-CCC-----CCCCCCceEEEecc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGT-KRL-----PYPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~d~-~~l-----p~~d~sFDlVv~s~ 287 (452)
..+||=+|+|. |.++..+++. .++ .+...+.++...+.+++.|....+...+. ..+ ....+.+|+|+-.-
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~--~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 271 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKL--RGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECV 271 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECC
Confidence 45788888742 3333444432 122 12223444556677777665322211110 000 01123589887432
Q ss_pred ccccccccHHHHHHHHHHhcCCC-cEEEEEe
Q 012961 288 CRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPG-G~lvi~~ 317 (452)
. . ...+.+..++|++| |.+++..
T Consensus 272 G------~-~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 272 G------D-TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred C------C-hHHHHHHHHhhccCCCEEEEEC
Confidence 1 1 23577888899999 9998755
No 365
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=32.32 E-value=1.1e+02 Score=31.08 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=37.2
Q ss_pred CeEEEEecCCCCCCCC-------CCceEEEecccccccc----ccHHHHHHHHHHhcCCCcEEEEEe-CCCCCC
Q 012961 262 PSTLGVLGTKRLPYPS-------RSFELAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSS-PEAYAH 323 (452)
Q Consensus 262 ~~~~~~~d~~~lp~~d-------~sFDlVv~s~~~l~~~----~d~~~~L~ei~RvLkPGG~lvi~~-p~~~~~ 323 (452)
++.|...|+..+.-++ .+.|+|...+.+-+.. ..--.+|..+...++||-.|+|++ |+.|..
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSYS~ 249 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSYSE 249 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCchh
Confidence 3566667765554321 2356665443222221 222449999999999999999887 455543
No 366
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.83 E-value=2.2e+02 Score=24.99 Aligned_cols=73 Identities=11% Similarity=-0.059 Sum_probs=47.5
Q ss_pred CCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEeceeEe
Q 012961 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 355 (452)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw 355 (452)
...|+|+.-+ . .--.+....|-.+.+.|..+|.+++..|..-...... -.++.+.+..+|+...........|
T Consensus 44 dvvD~vllWw-R-~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~---~~~I~eaA~taGL~~t~~~~v~~dW 116 (127)
T PF11253_consen 44 DVVDVVLLWW-R-DDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVE---PSDIREAAPTAGLVQTKSCAVGDDW 116 (127)
T ss_pred ccccEEEEEE-E-CCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCC---HHHHHHHHhhcCCeeeeeeccCCCc
Confidence 5678886422 0 0012345578888899999999999998653321111 1468889999999877666554445
No 367
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.76 E-value=66 Score=23.84 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=14.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 012961 12 SKQLTYVLLGLISVLGLVCLYY 33 (452)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~ 33 (452)
.++++.+++++++.|++++-.+
T Consensus 30 P~~Ll~~li~Vv~gl~llS~ll 51 (55)
T PF11293_consen 30 PWRLLIVLIVVVIGLGLLSRLL 51 (55)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777776666443
No 368
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=30.68 E-value=2e+02 Score=28.05 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=48.7
Q ss_pred CCEEEEECCCCchHHHHHhh-CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccccc
Q 012961 216 IRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~-~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~ 294 (452)
..+||=.|+ |.++..+.+ ....++.+.....++...+.+++.|....+ +.... ...+.+|+|+....
T Consensus 156 g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~---~~~~~-~~~~~~d~vid~~g------ 223 (319)
T cd08242 156 GDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVL---PDEAE-SEGGGFDVVVEATG------ 223 (319)
T ss_pred CCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEe---Ccccc-ccCCCCCEEEECCC------
Confidence 357777775 455555433 111233333334445556677665543221 11111 23456999985321
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEe
Q 012961 295 RDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
....+..+.+.|+++|.+++..
T Consensus 224 -~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 224 -SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred -ChHHHHHHHHHhhcCCEEEEEc
Confidence 1246788889999999999743
No 369
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=29.43 E-value=2.3e+02 Score=27.76 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=45.3
Q ss_pred CEEEEECCCCchHHHH---HhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 217 RNVLDVGCGVASFGAY---LLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~---La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
.+||=.||| .++.. +++. .++.+.....+....+.+++.+.... .+.... +++.+|+++...
T Consensus 169 ~~vlV~g~g--~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~~~g~~~~---~~~~~~--~~~~vD~vi~~~------ 233 (329)
T cd08298 169 QRLGLYGFG--ASAHLALQIARY--QGAEVFAFTRSGEHQELARELGADWA---GDSDDL--PPEPLDAAIIFA------ 233 (329)
T ss_pred CEEEEECCc--HHHHHHHHHHHH--CCCeEEEEcCChHHHHHHHHhCCcEE---eccCcc--CCCcccEEEEcC------
Confidence 356667765 44443 3332 22333333334445566655554211 112211 235689876321
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 294 QRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
. ....+.++.+.|+++|.+++..
T Consensus 234 ~-~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 234 P-VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred C-cHHHHHHHHHHhhcCCEEEEEc
Confidence 0 1247899999999999999764
No 370
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=29.33 E-value=1.8e+02 Score=30.76 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=47.3
Q ss_pred CCCEEEEECCC-Cch-HHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 215 NIRNVLDVGCG-VAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 215 ~~~~VLDIGCG-~G~-~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
..++||=||.| .|. .+.+|.++.+..+-+.......+. +.|.+-+ +.+ ....+++---..+|+|+++.+..++
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-~La~~~~--~~~--~~l~el~~~l~~~DvVissTsa~~~ 251 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-ELAKKLG--AEA--VALEELLEALAEADVVISSTSAPHP 251 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHHHhC--Cee--ecHHHHHHhhhhCCEEEEecCCCcc
Confidence 44589999999 564 456667776777777777665554 6777665 222 2233332222469999998776665
Q ss_pred cc
Q 012961 293 LQ 294 (452)
Q Consensus 293 ~~ 294 (452)
+-
T Consensus 252 ii 253 (414)
T COG0373 252 II 253 (414)
T ss_pred cc
Confidence 43
No 371
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=29.18 E-value=2.4e+02 Score=29.12 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=49.6
Q ss_pred CEEEEECCCC-chHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecCCCCC------CCCCCceEEEeccc
Q 012961 217 RNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YPSRSFELAHCSRC 288 (452)
Q Consensus 217 ~~VLDIGCG~-G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~~~lp------~~d~sFDlVv~s~~ 288 (452)
.+||=.|+|. |..+..+++. .+.. +...+.+....+.+++.|.. .+.......+. .....+|+|+-...
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~--~Ga~~vi~~d~~~~r~~~a~~~Ga~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQL--LGAAVVIVGDLNPARLAQARSFGCE-TVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHHHHHcCCe-EEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 3565577752 3344444442 1221 11223445566778777753 12111100110 12245899884332
Q ss_pred ccc-------ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 289 RID-------WLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 289 ~l~-------~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
.-. ...+....+.+..+++++||.+++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 100 001112478999999999999998664
No 372
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.75 E-value=1.8e+02 Score=29.01 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=48.7
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEecCCCC-----CC-CCCCceEEEecc
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PY-PSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~d~~~l-----p~-~d~sFDlVv~s~ 287 (452)
..+||=.|+| .|..+..+++. .+. .+...+.++.....+++.|....+. .....+ .+ ....+|+|+...
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~~g~~~~v~-~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARL--RGAGRIIAVGSRPNRVELAKEYGATDIVD-YKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHcCCceEec-CCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 4578888865 23444444543 122 1333344445556666655432111 111110 01 224689888432
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
. . ...+.++.+.|+++|.++...
T Consensus 244 g------~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 244 G------G-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred C------C-HHHHHHHHHHhhcCCEEEEec
Confidence 1 1 246889999999999998654
No 373
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=28.09 E-value=2.3e+02 Score=28.12 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=24.5
Q ss_pred CCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
+.+|+|+.... ....+.++.+.|+++|.++....
T Consensus 230 ~~vd~vld~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 230 TGVDVVLEMSG-------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CCCCEEEECCC-------CHHHHHHHHHHhccCCEEEEEcc
Confidence 46899985321 12357888999999999987653
No 374
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.03 E-value=53 Score=27.28 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=6.1
Q ss_pred chhHHHHHHHHHHH
Q 012961 13 KQLTYVLLGLISVL 26 (452)
Q Consensus 13 ~~~~~~~~~~~~~~ 26 (452)
|.++.+.++++++|
T Consensus 4 K~~llL~l~LA~lL 17 (95)
T PF07172_consen 4 KAFLLLGLLLAALL 17 (95)
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444444444
No 375
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=27.86 E-value=46 Score=32.20 Aligned_cols=20 Identities=15% Similarity=0.428 Sum_probs=16.0
Q ss_pred CCEEEEECCCCchHHHHHhh
Q 012961 216 IRNVLDVGCGVASFGAYLLS 235 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~ 235 (452)
+-+|+|+|+|.|.++..+++
T Consensus 19 ~~~ivE~GaG~G~La~diL~ 38 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILR 38 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHH
Confidence 35899999999999988875
No 376
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=27.84 E-value=92 Score=31.76 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCccccCChhhhhHHHHHHHH-HcCCCeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~vdis~~dis~~~~~~A~-~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
..+|.=||-|. |.-+..++-. .+.++.-.|++...++... ..+.+++........+.-.-...|+|+..- ++.--
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaV-LIpga 244 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAV-LIPGA 244 (371)
T ss_pred CccEEEECCccccchHHHHHhc--cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEE-EecCC
Confidence 34678888885 5666666532 2233333344444333322 223445544444333322224689998654 56655
Q ss_pred ccHHHHHHHHHHhcCCCcEEEE
Q 012961 294 QRDGILLLELDRLLRPGGYFVY 315 (452)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvi 315 (452)
..+....+++...+|||+.++=
T Consensus 245 kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEE
Confidence 6777799999999999999883
No 377
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=27.52 E-value=1.6e+02 Score=24.28 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=34.0
Q ss_pred EEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 219 VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
||= -||.|.-+..+.+ ....+..++++.++...+......+-.....|+|+++.
T Consensus 4 IL~-aCG~GvgSS~~ik--------------~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 4 ILA-ACGNGVGSSTMIK--------------MKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTST 57 (93)
T ss_pred EEE-ECCCCccHHHHHH--------------HHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEeh
Confidence 443 3888865554433 23345667788877766666666554446689999865
No 378
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=27.36 E-value=2.2e+02 Score=27.30 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=47.2
Q ss_pred CCEEEEECCC--CchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCC-----C-CCCCCceEEEecc
Q 012961 216 IRNVLDVGCG--VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG--~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~l-----p-~~d~sFDlVv~s~ 287 (452)
..+||-.||. .|..+..++.. .++.+...+.+....+.+.+.+....+.. ....+ . .....+|+++...
T Consensus 140 ~~~vli~g~~~~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~i~~~~~~~~~d~v~~~~ 216 (323)
T cd08241 140 GETVLVLGAAGGVGLAAVQLAKA--LGARVIAAASSEEKLALARALGADHVIDY-RDPDLRERVKALTGGRGVDVVYDPV 216 (323)
T ss_pred CCEEEEEcCCchHHHHHHHHHHH--hCCEEEEEeCCHHHHHHHHHcCCceeeec-CCccHHHHHHHHcCCCCcEEEEECc
Confidence 4589999982 34444444442 12233333334444556655554222211 11011 0 1234589887543
Q ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
. ...+..+.+.++++|.++...
T Consensus 217 g--------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 217 G--------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred c--------HHHHHHHHHhhccCCEEEEEc
Confidence 1 135667788999999988754
No 379
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=27.32 E-value=2.7e+02 Score=27.82 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 278 ~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
..+|+|+-... ....+.+..+.|+++|.++...
T Consensus 248 ~~~d~vid~~g-------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 248 RGADVVIEASG-------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCcEEEECCC-------ChHHHHHHHHHhccCCEEEEEc
Confidence 46999884321 0236788899999999999765
No 380
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=27.16 E-value=2.6e+02 Score=28.10 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=48.2
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCceEEEe
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAHC 285 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~~~lp--------~~d~sFDlVv~ 285 (452)
..+||-.|+| .|..+..+++. .++. +.....++...+.+.+.+.. .+ .+..... .+.+.+|+|+.
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~--~G~~~Vi~~~~~~~~~~~~~~~g~~-~v--v~~~~~~~~~~l~~~~~~~~vd~vld 257 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARI--AGASRIIAVDPVPEKLELARRFGAT-HT--VNASEDDAVEAVRDLTDGRGADYAFE 257 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHHhCCe-EE--eCCCCccHHHHHHHHcCCCCCCEEEE
Confidence 3478888774 34444555543 2332 33333344444555554532 11 1111111 12356998874
Q ss_pred ccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
... . ...+.++.+.|+++|.++...
T Consensus 258 ~~~------~-~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 258 AVG------R-AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred cCC------C-hHHHHHHHHHhhcCCeEEEEe
Confidence 321 0 246789999999999998764
No 381
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=26.64 E-value=2.2e+02 Score=28.85 Aligned_cols=93 Identities=10% Similarity=-0.009 Sum_probs=49.4
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEecC-CC----C-CCCCCCceEEEecc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGT-KR----L-PYPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~d~-~~----l-p~~d~sFDlVv~s~ 287 (452)
..+||=+|+|. |.++..+++. .+. .+...+.++...+.+++.|....+...+. .. + ....+.+|+|+-.-
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 263 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARM--AKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 45788888752 4444445542 122 23333455666677777665432211110 00 0 01123588887432
Q ss_pred ccccccccHHHHHHHHHHhcCCC-cEEEEEe
Q 012961 288 CRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPG-G~lvi~~ 317 (452)
. . ...+.+..+.|++| |.+++..
T Consensus 264 G------~-~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 264 G------N-VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred C------C-HHHHHHHHHHhhcCCCeEEEEe
Confidence 1 1 24678888999986 9988765
No 382
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=26.61 E-value=1.7e+02 Score=29.47 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=24.5
Q ss_pred CCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 277 d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
+..||+|+.... . ...+.++.+.|+++|.++...
T Consensus 254 ~~~~d~vld~vg------~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 254 GRGVDVVVEALG------K-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCEEEEeCC------C-HHHHHHHHHHHhcCCEEEEEc
Confidence 356999985321 1 126788899999999998765
No 383
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=26.55 E-value=2e+02 Score=28.23 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=37.7
Q ss_pred CeEEEEecCC-CCC-CCCCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHH
Q 012961 262 PSTLGVLGTK-RLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 339 (452)
Q Consensus 262 ~~~~~~~d~~-~lp-~~d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~ 339 (452)
++.++.+... .+| .+...+-+++.- ..+-+.....|..++..|.|||++++-+ |.. +.- -+.+.+..+
T Consensus 158 ~v~~vkG~F~dTLp~~p~~~IAll~lD---~DlYesT~~aLe~lyprl~~GGiIi~DD---Y~~-~gc---r~AvdeF~~ 227 (248)
T PF05711_consen 158 NVRFVKGWFPDTLPDAPIERIALLHLD---CDLYESTKDALEFLYPRLSPGGIIIFDD---YGH-PGC---RKAVDEFRA 227 (248)
T ss_dssp TEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESS---TTT-HHH---HHHHHHHHH
T ss_pred cEEEECCcchhhhccCCCccEEEEEEe---ccchHHHHHHHHHHHhhcCCCeEEEEeC---CCC-hHH---HHHHHHHHH
Confidence 4677776642 233 223334333321 1122333568999999999999999955 222 222 234556666
Q ss_pred hCCCE
Q 012961 340 SMCWK 344 (452)
Q Consensus 340 ~~Gf~ 344 (452)
+.|..
T Consensus 228 ~~gi~ 232 (248)
T PF05711_consen 228 EHGIT 232 (248)
T ss_dssp HTT--
T ss_pred HcCCC
Confidence 66654
No 384
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=26.49 E-value=1.6e+02 Score=28.70 Aligned_cols=52 Identities=29% Similarity=0.486 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEEEeceeEeecccc
Q 012961 296 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 360 (452)
Q Consensus 296 ~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~kp~~ 360 (452)
....+.++.|+|+++|.+++..+. .....+...+++.||.... ..+|.|+..
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~---------~~~~~~~~~~~~~gf~~~~----~iiw~k~~~ 129 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPF---------SNLARIEDIAKKLGFEILG----KIIWKKPSP 129 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCc---------hhhhHHHHHHHhCCCeEee----eEEEeCCCC
Confidence 345789999999999999987754 1234677778889998764 457888865
No 385
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=26.16 E-value=2.2e+02 Score=21.38 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCCcEEEEE
Q 012961 298 ILLLELDRLLRPGGYFVYS 316 (452)
Q Consensus 298 ~~L~ei~RvLkPGG~lvi~ 316 (452)
.-++++.+.+..||.+++.
T Consensus 51 ~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 4567888888899999985
No 386
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=26.16 E-value=3.3e+02 Score=26.99 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=25.1
Q ss_pred CCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 277 d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
.+.||+|+-.. . ....+.++.+.|+++|.++....
T Consensus 228 ~~~~d~vld~~--g-----~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 228 GEGVDVFLEMS--G-----APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCCCCEEEECC--C-----CHHHHHHHHHhhcCCCEEEEEcc
Confidence 35699998432 1 12468889999999999987654
No 387
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=26.06 E-value=69 Score=34.70 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccCC
Q 012961 13 KQLTYVLLGLISVLGLVCLYYGSTSAP 39 (452)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (452)
|.+.+++++++++.++++||.|.+|.+
T Consensus 478 K~LWIsvAliVLLAaLlSfLtg~~fq~ 504 (538)
T PF05781_consen 478 KVLWISVALIVLLAALLSFLTGLFFQR 504 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445566677777777788888888885
No 388
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=25.44 E-value=4.3e+02 Score=26.98 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=49.8
Q ss_pred CEEEEECCCCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccccc-
Q 012961 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR- 295 (452)
Q Consensus 217 ~~VLDIGCG~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d- 295 (452)
++||=+|--...+...|....+. +.....+..+ ......+..+.|.. +.. .+. ...||+|+. .+...
T Consensus 21 ~~~l~~~~~~d~~~~~l~~~~~~---~~~~~~~~~~-~~~~~~~~~~~f~~-~~~-~~~-~~~~d~~~~-----~~pk~k 88 (342)
T PRK09489 21 RRVLFAGDLQDDLPAQLDAASVR---VHTQQFHHWQ-VLSRQMGDNARFSL-VAT-AED-VADCDTLIY-----YWPKNK 88 (342)
T ss_pred CcEEEEcCcchhhHHhhhccceE---EehhhhHHHH-HHHhhcCCceEecc-ccC-Ccc-CCCCCEEEE-----ECCCCH
Confidence 36888887777777766532222 1111222221 12222233333331 111 111 257999873 33332
Q ss_pred --HHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 296 --DGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 296 --~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
.+-.|..+.+.|+|||.+++....
T Consensus 89 ~~~~~~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 89 QEAQFQLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEec
Confidence 244899999999999999998743
No 389
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=25.16 E-value=4.2e+02 Score=24.06 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEE
Q 012961 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (452)
Q Consensus 295 d~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 348 (452)
..+..++.+.+.++||.++++.+... .....+..+.+...+++.||+.+..
T Consensus 137 ~~~~i~~~~~~~~~~g~Iil~Hd~~~---~~~t~~~l~~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 137 GVESIVDRVVKNTKPGDIILLHASDS---AKQTVKALPTIIKKLKEKGYEFVTI 187 (191)
T ss_pred CHHHHHHHHHhcCCCCCEEEEeCCCC---cHhHHHHHHHHHHHHHHCCCEEEEH
Confidence 34567788888899998888875211 1233445678888899999988753
No 390
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=25.05 E-value=1.3e+02 Score=30.92 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=22.8
Q ss_pred CceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 279 sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.+|+|+-.-. . ...+.+..+.|++||.++...
T Consensus 242 ~~D~vid~~G------~-~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 242 TMDFIIDTVS------A-EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred CCcEEEECCC------c-HHHHHHHHHhhcCCCEEEEEc
Confidence 4888874321 1 236788889999999999765
No 391
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=25.00 E-value=64 Score=31.76 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=17.7
Q ss_pred CCEEEEECCCCchHHHHHhh
Q 012961 216 IRNVLDVGCGVASFGAYLLS 235 (452)
Q Consensus 216 ~~~VLDIGCG~G~~~~~La~ 235 (452)
...++|+|||.|.++.++++
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~ 38 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQ 38 (259)
T ss_pred CCEEEEECCCchHHHHHHHH
Confidence 34899999999999999986
No 392
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=24.62 E-value=2.2e+02 Score=27.36 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=49.5
Q ss_pred CCEEEEECC--CCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCC-----CCCCCCceEEEeccc
Q 012961 216 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGC--G~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~l-----p~~d~sFDlVv~s~~ 288 (452)
+.+||=.|+ +.|..+..+++. .+..+.....++...+.+.+.+....+. +...+ .+ .+.+|+|+....
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~i~~~-~~~~d~vl~~~~ 217 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKA--LGATVTATTRSPERAALLKELGADEVVI--DDGAIAEQLRAA-PGGFDKVLELVG 217 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhcCCcEEEe--cCccHHHHHHHh-CCCceEEEECCC
Confidence 357888886 355566666653 1233333333444456665555432211 11111 12 356999985321
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
...+.++.+.|+++|.++...
T Consensus 218 --------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 218 --------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred --------hHHHHHHHHHhccCCEEEEEc
Confidence 246888899999999998765
No 393
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.36 E-value=3.4e+02 Score=26.02 Aligned_cols=88 Identities=24% Similarity=0.227 Sum_probs=48.6
Q ss_pred CCEEEEECCC--CchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccc
Q 012961 216 IRNVLDVGCG--VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (452)
Q Consensus 216 ~~~VLDIGCG--~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~ 293 (452)
..+||=.|++ .|..+..++.. .+..+.....++...+.+++.|....+ ....++ .++.+|+++....
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~--~~~~~~--~~~~~d~vl~~~g----- 201 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAAL--AGAHVVAVVGSPARAEGLRELGAAEVV--VGGSEL--SGAPVDLVVDSVG----- 201 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHcCCcEEE--eccccc--cCCCceEEEECCC-----
Confidence 3478888873 44444444443 123333333344455666665543211 111222 2246899874321
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 294 QRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
...+.+..+.|+++|.++...
T Consensus 202 ---~~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 202 ---GPQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ---cHHHHHHHHHhcCCCEEEEEe
Confidence 135788999999999999765
No 394
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=24.09 E-value=2e+02 Score=28.60 Aligned_cols=89 Identities=22% Similarity=0.255 Sum_probs=50.6
Q ss_pred EEEEECCCC--chHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCCCCCCCCCceEEEecccccccccc
Q 012961 218 NVLDVGCGV--ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (452)
Q Consensus 218 ~VLDIGCG~--G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~~~d 295 (452)
+|+=+|.|- |+++..|... -..+.+.+.|.+.+....+.+.+.......... -......|+|+.+- + +..
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~---~~~~~~aD~Vivav---P-i~~ 76 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAALELGVIDELTVAGL---AEAAAEADLVIVAV---P-IEA 76 (279)
T ss_pred EEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHhhcCcccccccchh---hhhcccCCEEEEec---c-HHH
Confidence 577777663 4555555543 344556666777777777776664322211110 11224589998643 1 223
Q ss_pred HHHHHHHHHHhcCCCcEEE
Q 012961 296 DGILLLELDRLLRPGGYFV 314 (452)
Q Consensus 296 ~~~~L~ei~RvLkPGG~lv 314 (452)
...+++++...|++|..+.
T Consensus 77 ~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 77 TEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHHhcccCCCCCEEE
Confidence 3557888887788776655
No 395
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=23.57 E-value=6.3e+02 Score=23.85 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCEEEEE
Q 012961 296 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (452)
Q Consensus 296 ~~~~L~ei~RvLkPGG~lvi~~p~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 348 (452)
....++.+.+-++||.++++.+.. ....+..+.+...+++.||+.+..
T Consensus 173 ~~~~~~~v~~~~~~g~IiLlHd~~-----~~t~~aL~~ii~~lk~~Gy~fvtl 220 (224)
T TIGR02884 173 WQYAYKQIMKKIHPGAILLLHAVS-----KDNAEALDKIIKDLKEQGYTFKSL 220 (224)
T ss_pred HHHHHHHHHhcCCCCcEEEEECCC-----CCHHHHHHHHHHHHHHCCCEEEEh
Confidence 345677788888999988887632 123456788999999999998754
No 396
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=23.16 E-value=31 Score=28.64 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=10.5
Q ss_pred EEEECCCCchHHHH
Q 012961 219 VLDVGCGVASFGAY 232 (452)
Q Consensus 219 VLDIGCG~G~~~~~ 232 (452)
-+|||||.|.....
T Consensus 6 NIDIGcG~GNTmda 19 (124)
T PF07101_consen 6 NIDIGCGAGNTMDA 19 (124)
T ss_pred ccccccCCCcchhh
Confidence 47999999975433
No 397
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=23.01 E-value=2.6e+02 Score=28.33 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=49.0
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEecCC-CC-----CCCCCCceEEEecc
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-----PYPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~d~~-~l-----p~~d~sFDlVv~s~ 287 (452)
..+||=+|+| .|.++..+++. .+. .+...+.++...+.+++.|....+...+.. .+ ....+.+|+|+-..
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 264 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECI 264 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECC
Confidence 4578888864 23344444442 233 233334555666777666643222111110 00 01123689887432
Q ss_pred ccccccccHHHHHHHHHHhcCCC-cEEEEEe
Q 012961 288 CRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPG-G~lvi~~ 317 (452)
. . ...+.+..+.|+++ |.+++..
T Consensus 265 g------~-~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 265 G------N-VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred C------C-hHHHHHHHHhhccCCCeEEEEc
Confidence 1 1 24678888999997 9988765
No 398
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=22.92 E-value=78 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=15.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhc
Q 012961 10 RTSKQLTYVLLGLISVLGLVCLYYG 34 (452)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (452)
|+|+.++...++++++..++++|++
T Consensus 37 Psrke~~~~t~~Vl~~v~~~s~~~~ 61 (73)
T COG0690 37 PTRKELIRSTLIVLVVVAFFSLFLY 61 (73)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7877777666655555555555443
No 399
>PF14983 DUF4513: Domain of unknown function (DUF4513)
Probab=22.64 E-value=29 Score=29.69 Aligned_cols=34 Identities=35% Similarity=0.548 Sum_probs=21.8
Q ss_pred ccccccCCCCCCCCCCcccCCCCCCC---CCCCCCCCc
Q 012961 115 MEHYERHCPPPERRYNCLVPPPKGYK---IPVRWPASR 149 (452)
Q Consensus 115 ~~~~er~C~~~~~~~~clv~~P~gY~---~P~~wp~s~ 149 (452)
.+|+||.|... .|-.-+-..|+--+ .|++-|.||
T Consensus 81 L~~rERlchGE-dR~~Vl~K~p~~~kiadmPlhSplSR 117 (132)
T PF14983_consen 81 LDHRERLCHGE-DRKVVLKKGPPEIKIADMPLHSPLSR 117 (132)
T ss_pred hhhhhhhhccc-chhhhhhcCCCcceecCCccCChHHH
Confidence 57999999984 44344445555333 577777765
No 400
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=22.02 E-value=3.6e+02 Score=27.42 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHcCCCeEEEEecCCCCCC--CCCCceEEEeccccccccccH--HHHHHHHHHhcCCCcEEEEEe
Q 012961 247 DVHENQIQFALERGIPSTLGVLGTKRLPY--PSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 247 dis~~~~~~A~~rg~~~~~~~~d~~~lp~--~d~sFDlVv~s~~~l~~~~d~--~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.+.+...+.++..-.++.++.+|..++-- +.+..|.++... +-.|+++. +.++.++.|-+.+|..+++.+
T Consensus 293 yl~~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlD-aqdwmtd~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 293 YLDEGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLD-AQDWMTDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred hhchhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEec-chhhcccchHHHHHHHHhhccCCCcEEEEec
Confidence 33444444444444457777788655432 567899998766 67888765 669999999999999999865
No 401
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=21.91 E-value=78 Score=32.74 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=44.1
Q ss_pred CCCEEEEECCCC-chHHHHHhhCCCccccCChhhhhHHHHHHHHHc-CCCeEEEEecCCCCCCCCCCceEEEeccccccc
Q 012961 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (452)
Q Consensus 215 ~~~~VLDIGCG~-G~~~~~La~~~v~~vdis~~dis~~~~~~A~~r-g~~~~~~~~d~~~lp~~d~sFDlVv~s~~~l~~ 292 (452)
.+.+|+=||+|. |..+...+.. .++++...|.+....+.+... +..+.....+...+.-.-..+|+|++... +.-
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~-~~g 242 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANG--LGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL-IPG 242 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc-cCC
Confidence 345799999883 4444444432 122233333333333333322 22221111111111100135899986431 111
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEE
Q 012961 293 LQRDGILLLELDRLLRPGGYFVYS 316 (452)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~lvi~ 316 (452)
...+..+-+++.+.++||+.++-.
T Consensus 243 ~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 243 AKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCCcCcCHHHHhcCCCCCEEEEE
Confidence 111222346667778999888743
No 402
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=21.72 E-value=2.7e+02 Score=28.07 Aligned_cols=94 Identities=16% Similarity=0.091 Sum_probs=47.6
Q ss_pred CCEEEEECCC-CchHHHHHhhCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEEecC-CC----C-CCCCCCceEEEecc
Q 012961 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGT-KR----L-PYPSRSFELAHCSR 287 (452)
Q Consensus 216 ~~~VLDIGCG-~G~~~~~La~~~v~~v-dis~~dis~~~~~~A~~rg~~~~~~~~d~-~~----l-p~~d~sFDlVv~s~ 287 (452)
..+||=+|+| .|.++..+++. .+. .+...+.+....+.+++.+....+...+. .. + ....+.+|+|+-..
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~ 262 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT 262 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence 3478878864 23333444442 122 23333445555667766554321111110 00 0 01124689887432
Q ss_pred ccccccccHHHHHHHHHHhcCCC-cEEEEEeC
Q 012961 288 CRIDWLQRDGILLLELDRLLRPG-GYFVYSSP 318 (452)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPG-G~lvi~~p 318 (452)
. . ...+.+..+.|+++ |.+++...
T Consensus 263 g------~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 263 G------N-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred C------C-hHHHHHHHHhcccCCCEEEEEcC
Confidence 1 1 24678888999886 99987653
No 403
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=21.67 E-value=1.1e+02 Score=24.04 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012961 16 TYVLLGLISVLGLVCLYY 33 (452)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (452)
+..++.+++++.+.++|+
T Consensus 52 ii~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 52 IISIIFVLIIVLLTFLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333345554
No 404
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.52 E-value=1.1e+02 Score=24.27 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=10.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHH
Q 012961 10 RTSKQLTYVLLGLISVLGLVCLY 32 (452)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (452)
|.+...+.+.+++++++++++.|
T Consensus 56 P~~~lil~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 56 PKRALILALGLFLGLILGIGLAF 78 (82)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555544443
No 405
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=21.48 E-value=3.1e+02 Score=27.01 Aligned_cols=90 Identities=22% Similarity=0.194 Sum_probs=46.3
Q ss_pred CCEEEEECC--CCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCCC---C-CCCCCCceEEEecccc
Q 012961 216 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---L-PYPSRSFELAHCSRCR 289 (452)
Q Consensus 216 ~~~VLDIGC--G~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~~---l-p~~d~sFDlVv~s~~~ 289 (452)
..+||=+|+ +.|..+..+++. .+..+.....+. ..+.+++.+.. .+...+... . ......+|+|+....
T Consensus 178 g~~vlI~g~~g~ig~~~~~~a~~--~g~~vi~~~~~~-~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~~g- 252 (350)
T cd08274 178 GETVLVTGASGGVGSALVQLAKR--RGAIVIAVAGAA-KEEAVRALGAD-TVILRDAPLLADAKALGGEPVDVVADVVG- 252 (350)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHh--cCCEEEEEeCch-hhHHHHhcCCe-EEEeCCCccHHHHHhhCCCCCcEEEecCC-
Confidence 357888887 344454555543 122222222222 44555555543 111111100 0 012356999985321
Q ss_pred ccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
...+.++.+.|+++|.++...
T Consensus 253 -------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 253 -------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred -------HHHHHHHHHHhccCCEEEEec
Confidence 135788899999999998654
No 406
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=21.47 E-value=2.9e+02 Score=26.93 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=48.7
Q ss_pred CEEEEECC--CCchHHHHHhhCCCccccCChhhhhHHHHHHHHHcCCCeEEEEecC--CCC-CCCCCCceEEEecccccc
Q 012961 217 RNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT--KRL-PYPSRSFELAHCSRCRID 291 (452)
Q Consensus 217 ~~VLDIGC--G~G~~~~~La~~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~--~~l-p~~d~sFDlVv~s~~~l~ 291 (452)
.+||=+|+ +.|..+..+++. .++.+.....++...+.+++.+....+...+. +.+ .+....+|+|+....
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g--- 222 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAK--LGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVG--- 222 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHH--CCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCc---
Confidence 47888887 234444555543 12333333334455566665554221111110 000 112345888874321
Q ss_pred ccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
...+.+..+.|+++|.++....
T Consensus 223 -----~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 223 -----GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred -----HHHHHHHHHHhhcCCEEEEEee
Confidence 2357888999999999998753
No 407
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=21.26 E-value=1.6e+02 Score=26.47 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=29.9
Q ss_pred EEEEecCCCCCCC-CCCceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 264 TLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 264 ~~~~~d~~~lp~~-d~sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
.+...+-...+.+ .+.+|++++.. ...+......|+|||++++-..
T Consensus 41 ~vris~~~~~~~~~~~~~Dilv~l~---------~~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 41 HVRISDEPIIPSPPVGEADILVALD---------PEALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp EEEEESS--SSSS-TSSESEEEESS---------HHHHHHCGTTCETTEEEEEETT
T ss_pred EEEEecCcCccCcccCCCCEEEEcC---------HHHHHHHhcCcCcCeEEEEECC
Confidence 3444443133333 37899999653 2455688888999999999663
No 408
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=21.18 E-value=79 Score=35.04 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCchHHHHHhh-----CCCccccCChhh
Q 012961 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPND 247 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~-----~~v~~vdis~~d 247 (452)
+...|||+||..|.+.....+ .-|+|||+.++-
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik 81 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK 81 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc
Confidence 345799999999999887775 357788887654
No 409
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=20.80 E-value=4.8e+02 Score=26.54 Aligned_cols=31 Identities=10% Similarity=0.008 Sum_probs=22.4
Q ss_pred CceEEEeccccccccccHHHHHHHHHHhcCCCcEEEEEe
Q 012961 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 279 sFDlVv~s~~~l~~~~d~~~~L~ei~RvLkPGG~lvi~~ 317 (452)
.+|+|+.... ...+.+..+.|+++|.++...
T Consensus 285 g~d~vid~~g--------~~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 285 DPDIVFEHPG--------RATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred CCeEEEECCc--------hHhHHHHHHHhccCCEEEEEc
Confidence 5888874321 135777889999999999764
No 410
>PHA02692 hypothetical protein; Provisional
Probab=20.72 E-value=1.5e+02 Score=23.19 Aligned_cols=9 Identities=0% Similarity=0.198 Sum_probs=4.1
Q ss_pred ccchhHHHH
Q 012961 11 TSKQLTYVL 19 (452)
Q Consensus 11 ~~~~~~~~~ 19 (452)
..|..++++
T Consensus 43 ~~~~~~ii~ 51 (70)
T PHA02692 43 VPWTTVFLI 51 (70)
T ss_pred cchHHHHHH
Confidence 334444444
No 411
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.48 E-value=2.5e+02 Score=22.21 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=19.8
Q ss_pred HHHHcCCCeEEEEecCCCCCCCCCCceEEEecc
Q 012961 255 FALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (452)
Q Consensus 255 ~A~~rg~~~~~~~~d~~~lp~~d~sFDlVv~s~ 287 (452)
...+.+....+...+...+. ..+|+|++..
T Consensus 24 ~~~~~~~~~~v~~~~~~~~~---~~~Dliitt~ 53 (87)
T cd05567 24 KLKKAGLEIPVTNSAIDELP---SDADLVVTHA 53 (87)
T ss_pred HHHHCCCceEEEEcchhhCC---CCCCEEEECh
Confidence 33455666667666766665 5689999754
No 412
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=20.46 E-value=1.3e+02 Score=32.31 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=61.8
Q ss_pred CCCEEEEECCCCchHHHHHhh----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEecCC----CC---CCCCCCceEE
Q 012961 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK----RL---PYPSRSFELA 283 (452)
Q Consensus 215 ~~~~VLDIGCG~G~~~~~La~----~~v~~vdis~~dis~~~~~~A~~rg~~~~~~~~d~~----~l---p~~d~sFDlV 283 (452)
....+|-||=|.|.+...+.. ..++++++.+.++..+.-.+-.....+..+...|.. ++ .-.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 344689999999998888764 468888888887766554443333223333333311 11 1134568888
Q ss_pred Eecccc--cccc--ccH----HHHHHHHHHhcCCCcEEEEEe
Q 012961 284 HCSRCR--IDWL--QRD----GILLLELDRLLRPGGYFVYSS 317 (452)
Q Consensus 284 v~s~~~--l~~~--~d~----~~~L~ei~RvLkPGG~lvi~~ 317 (452)
..--.. .|-. +.+ ..+|..+..+|.|.|.++|-.
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 642100 1111 111 448899999999999999854
No 413
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=20.30 E-value=3.6e+02 Score=27.22 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=48.4
Q ss_pred CCEEEEECCCC-chHHHHHhhCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEEecCCCC-----CCCCCCceEEEeccc
Q 012961 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 288 (452)
Q Consensus 216 ~~~VLDIGCG~-G~~~~~La~~~v~~vd-is~~dis~~~~~~A~~rg~~~~~~~~d~~~l-----p~~d~sFDlVv~s~~ 288 (452)
..+||=.|+|. |..+..+++. .+.. +...+.++...+.+++.+... ++......+ ......+|+|+-...
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~--~G~~~v~~~~~~~~k~~~~~~~g~~~-~i~~~~~~~~~~v~~~~~~~~d~vld~~g 263 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKI--AGCTTIIAVDIVDSRLELAKELGATH-VINPKEEDLVAAIREITGGGVDYALDTTG 263 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHcCCcE-EecCCCcCHHHHHHHHhCCCCcEEEECCC
Confidence 35788887642 4444444442 1221 333344455556666555421 111111110 011346898874321
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeC
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p 318 (452)
. ...+.++.+.|+++|.++....
T Consensus 264 -~------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 264 -V------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred -C------cHHHHHHHHHhccCCEEEEeCc
Confidence 0 2367899999999999998654
No 414
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=20.05 E-value=6.1e+02 Score=25.15 Aligned_cols=94 Identities=9% Similarity=0.013 Sum_probs=48.9
Q ss_pred EEEEECCCC-c-hHHHHHhhCCCccccCChhhhhHHHHHHHHH-cCCCeEEEEecCCC------CCCCCCCceEEEeccc
Q 012961 218 NVLDVGCGV-A-SFGAYLLSHDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKR------LPYPSRSFELAHCSRC 288 (452)
Q Consensus 218 ~VLDIGCG~-G-~~~~~La~~~v~~vdis~~dis~~~~~~A~~-rg~~~~~~~~d~~~------lp~~d~sFDlVv~s~~ 288 (452)
+|+=+|+|. | .++.+|.+. +.++.-.+-....++..++ .|..+. ....... .+-+.+.||+|+..-
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~~Gl~i~-~~g~~~~~~~~~~~~~~~~~~D~viv~v- 78 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQAGGLTLV-EQGQASLYAIPAETADAAEPIHRLLLAC- 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhcCCeEEe-eCCcceeeccCCCCcccccccCEEEEEC-
Confidence 588899884 4 566666664 3333333433333333332 333211 0000000 011124799988543
Q ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEeCC
Q 012961 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (452)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~lvi~~p~ 319 (452)
=. .+....+..+...+.++..++.....
T Consensus 79 -K~--~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 79 -KA--YDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred -CH--HhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 11 12356788899999999877765443
Done!