Query         012962
Match_columns 452
No_of_seqs    180 out of 2165
Neff          11.0
Searched_HMMs 46136
Date          Fri Mar 29 08:07:17 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012962hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0156 Cytochrome P450 CYP2 s 100.0 4.3E-76 9.4E-81  552.5  40.8  438    5-452    29-487 (489)
  2 PLN02290 cytokinin trans-hydro 100.0 4.7E-75   1E-79  566.6  43.2  427   20-452    82-514 (516)
  3 KOG0158 Cytochrome P450 CYP3/C 100.0 2.7E-74 5.9E-79  531.9  39.4  438    4-452    33-498 (499)
  4 KOG0157 Cytochrome P450 CYP4/C 100.0 9.3E-73   2E-77  541.3  37.1  443    4-452    37-495 (497)
  5 PLN02738 carotene beta-ring hy 100.0 9.1E-72   2E-76  545.3  41.7  426   18-452   151-594 (633)
  6 PLN02169 fatty acid (omega-1)- 100.0 6.7E-72 1.5E-76  538.8  39.8  441    3-452    32-499 (500)
  7 PLN02183 ferulate 5-hydroxylas 100.0 1.2E-71 2.7E-76  541.2  41.1  444    6-452    40-511 (516)
  8 PTZ00404 cytochrome P450; Prov 100.0 3.7E-72 7.9E-77  542.1  37.2  432    5-452    32-482 (482)
  9 PLN00110 flavonoid 3',5'-hydro 100.0 1.3E-71 2.8E-76  537.9  39.7  441    6-452    35-496 (504)
 10 PLN03234 cytochrome P450 83B1; 100.0 2.9E-71 6.3E-76  538.2  40.2  443    6-452    32-498 (499)
 11 PLN02687 flavonoid 3'-monooxyg 100.0 4.7E-71   1E-75  537.3  40.4  443    6-452    38-508 (517)
 12 PLN02500 cytochrome P450 90B1  100.0 4.4E-71 9.5E-76  534.9  39.5  411   19-451    63-488 (490)
 13 PLN02971 tryptophan N-hydroxyl 100.0   9E-71   2E-75  536.9  42.0  441    6-452    61-533 (543)
 14 KOG0159 Cytochrome P450 CYP11/ 100.0 6.5E-71 1.4E-75  497.4  36.0  423   18-452    73-517 (519)
 15 PLN03195 fatty acid omega-hydr 100.0 1.6E-70 3.5E-75  534.3  39.9  441    5-452    33-515 (516)
 16 PLN02655 ent-kaurene oxidase   100.0 5.5E-70 1.2E-74  523.4  41.3  434    6-452     3-463 (466)
 17 PLN00168 Cytochrome P450; Prov 100.0 6.3E-70 1.4E-74  529.6  42.2  443    6-452    39-516 (519)
 18 PLN03112 cytochrome P450 famil 100.0 1.2E-69 2.6E-74  528.4  40.4  445    5-452    35-507 (514)
 19 PF00067 p450:  Cytochrome P450 100.0 1.5E-70 3.2E-75  532.2  32.5  438    5-449     2-463 (463)
 20 PLN02966 cytochrome P450 83A1  100.0 3.3E-69 7.1E-74  522.9  41.3  442    5-451    32-498 (502)
 21 PLN02394 trans-cinnamate 4-mon 100.0 3.6E-69 7.8E-74  524.0  41.5  443    4-452    32-501 (503)
 22 PLN02936 epsilon-ring hydroxyl 100.0 8.9E-69 1.9E-73  517.2  40.1  427   17-452    35-481 (489)
 23 PLN03141 3-epi-6-deoxocathaste 100.0 6.1E-69 1.3E-73  514.6  38.5  409   18-452    31-449 (452)
 24 PLN02196 abscisic acid 8'-hydr 100.0 4.1E-69 8.8E-74  516.5  37.0  413    7-452    40-462 (463)
 25 PLN02774 brassinosteroid-6-oxi 100.0 3.5E-69 7.6E-74  517.4  36.3  418    7-451    36-462 (463)
 26 PLN02426 cytochrome P450, fami 100.0 2.7E-67 5.8E-72  506.0  40.0  422   14-452    56-499 (502)
 27 PLN03018 homomethionine N-hydr 100.0 8.2E-67 1.8E-71  505.2  42.1  444    6-452    44-523 (534)
 28 PLN02987 Cytochrome P450, fami 100.0 1.9E-66 4.1E-71  496.3  37.9  408   18-452    54-468 (472)
 29 PLN02302 ent-kaurenoic acid ox 100.0 5.6E-66 1.2E-70  501.4  41.3  412   18-452    66-487 (490)
 30 KOG0684 Cytochrome P450 [Secon 100.0 2.2E-66 4.8E-71  456.3  31.1  425   13-452    46-484 (486)
 31 COG2124 CypX Cytochrome P450 [ 100.0 4.3E-57 9.3E-62  423.8  30.8  380   20-452    24-410 (411)
 32 PLN02648 allene oxide synthase 100.0   1E-56 2.2E-61  425.9  30.3  378   17-430    40-464 (480)
 33 PF12554 MOZART1:  Mitotic-spin  68.1      17 0.00037   22.3   4.3   43  249-291     5-47  (48)
 34 PF12508 DUF3714:  Protein of u  49.6      15 0.00033   30.7   2.5   44  307-351    51-94  (200)
 35 PF05952 ComX:  Bacillus compet  43.8      20 0.00044   22.9   1.9   19  272-290     4-22  (57)
 36 PF13625 Helicase_C_3:  Helicas  41.0      48   0.001   25.5   4.1   39   20-60     76-114 (129)
 37 PF09201 SRX:  SRX;  InterPro:   40.2      26 0.00057   26.9   2.3   23  399-421    19-41  (148)
 38 PRK06789 flagellar motor switc  40.0      38 0.00082   23.1   2.8   39  315-353    22-63  (74)
 39 PF11138 DUF2911:  Protein of u  39.4      45 0.00099   26.3   3.6   42  331-374    51-99  (145)
 40 PF02268 TFIIA_gamma_N:  Transc  36.9      54  0.0012   20.3   2.9   45  275-319     3-48  (49)
 41 cd08780 Death_TRADD Death Doma  34.1 1.7E+02  0.0037   20.8   5.2   65   86-150    13-88  (90)
 42 PF14550 Peptidase_U35_2:  Puta  31.4      34 0.00075   26.0   1.8   32  329-363    70-101 (122)
 43 PF13893 RRM_5:  RNA recognitio  29.3 1.2E+02  0.0025   18.9   3.8   35   24-58      1-39  (56)
 44 PF11227 DUF3025:  Protein of u  26.8      35 0.00075   28.7   1.2   21  353-374   191-211 (212)
 45 KOG3506 40S ribosomal protein   26.0      32 0.00069   21.6   0.6   11  391-401    12-22  (56)
 46 PF08776 VASP_tetra:  VASP tetr  25.3 1.1E+02  0.0024   17.9   2.6   29  281-321    10-38  (40)
 47 TIGR00589 ogt O-6-methylguanin  25.0 1.7E+02  0.0036   20.4   4.1   60  282-341     2-66  (80)
 48 PF08780 NTase_sub_bind:  Nucle  24.7 3.2E+02   0.007   20.9   6.1   60   52-113    46-108 (124)
 49 KOG0114 Predicted RNA-binding   23.6 1.9E+02  0.0041   21.3   4.2   39   21-59     32-76  (124)
 50 PF14129 DUF4296:  Domain of un  23.5 2.7E+02  0.0059   19.6   5.5   49  247-295    30-78  (87)
 51 TIGR03779 Bac_Flav_CT_M Bacter  22.4      70  0.0015   30.2   2.4   45  307-352   254-298 (410)
 52 PF09551 Spore_II_R:  Stage II   21.5 2.7E+02  0.0059   21.5   5.0   41  307-348    53-98  (130)
 53 PF09105 SelB-wing_1:  Elongati  21.1 2.1E+02  0.0045   17.3   4.4   21  245-265    28-48  (61)
 54 PF15300 INT_SG_DDX_CT_C:  INTS  21.0      69  0.0015   21.2   1.5   15  308-322    40-54  (65)

No 1  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=4.3e-76  Score=552.51  Aligned_cols=438  Identities=23%  Similarity=0.389  Sum_probs=361.2

Q ss_pred             CCCCCccc---cccccCC-CchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCch-hhhhhhhc--
Q 012962            5 TMRSPMEL---SHQIYPR-VSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREP-REYTKKLL--   77 (452)
Q Consensus         5 ~~~~~~~~---~~~~~~~-~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~-~~~~~~~~--   77 (452)
                      .+|.|||+   +|++... +|..+.+|.++||++|.+|+|..++|||+|+++++|+|++++..|..++. ......+.  
T Consensus        29 PGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~~~~~  108 (489)
T KOG0156|consen   29 PGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKYLSYG  108 (489)
T ss_pred             cCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHHhcCC
Confidence            47888886   8888887 99999999999999999999999999999999999999999888977764 22323333  


Q ss_pred             cCceecc-cCchHHHHHhhhcC-CCChHHHhhHHHHHHHHHHHHHHHHhhc-CCCceehHHHHHHhhHHHHHHHHhcCcc
Q 012962           78 GNGLVTA-QGEKWFKQRKLANH-AFHAETLKSMIPDMIASAEMMLDRWRDN-EGQEIDVYQEFKILTLEAISRTAFGSSY  154 (452)
Q Consensus        78 g~~l~~~-~g~~~~~~R~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~-~~~~vdl~~~~~~~~~~~~~~~~fG~~~  154 (452)
                      +.+++++ +|+.|+.+||++.. .++...++.+...-.++++.+++.+.+. .+.++|+...+..++++++++++||.++
T Consensus       109 ~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~~~~~~~vdl~~~l~~~~~nvI~~~~fG~rf  188 (489)
T KOG0156|consen  109 GKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSKSKKGEPVDLSELLDLLVGNVICRMLFGRRF  188 (489)
T ss_pred             CCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHhcCCCceeeHHHHHHHHHHHHHHHHHhCCcc
Confidence            3677777 79999999999874 4677777887777799999999999862 1278999999999999999999999999


Q ss_pred             ccc--hh---hHHHHHHHHHHHHhcccccccc-cccccccc--CCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCc
Q 012962          155 LEG--EN---IFNMLTKLTFFISKNEYRVRIP-VIGKLVKT--HDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDG  226 (452)
Q Consensus       155 ~~~--~~---~~~~~~~~~~~~~~~~~~~~~P-~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  226 (452)
                      ..+  +.   +.+.+......+........+| ++ ++++.  ...+........+..++.++++++++.. .. .  ..
T Consensus       189 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l-~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~-~~-~--~~  263 (489)
T KOG0156|consen  189 EEEDEEEFLELKELVEESLELLGSFNLSDYFPFLL-RWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI-GD-E--EG  263 (489)
T ss_pred             ccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cc-C--CC
Confidence            752  22   3344445555555556677778 45 45542  1344455555568999999999988765 21 1  33


Q ss_pred             ccHHHHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCC-CChhhh
Q 012962          227 NDLLGVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQQS-PNADNI  305 (452)
Q Consensus       227 ~~~~~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~~~-~~~~~~  305 (452)
                      .|+++.|++...++... .+++++|.+.+.++++||+|||++|+.|++.+|++||++|+|+++||++++|.+. ++.+|+
T Consensus       264 ~D~vD~lL~~~~~~~~~-~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v~e~D~  342 (489)
T KOG0156|consen  264 RDFVDALLKLMKEEKAE-GLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLVSESDL  342 (489)
T ss_pred             CcHHHHHHHhhcccccC-CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCChhhh
Confidence            99999999987654222 2999999999999999999999999999999999999999999999999999654 999999


Q ss_pred             ccchhHHHHHHhhhcCCCCcccc-cceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCccccc
Q 012962          306 SRLKIMSMIINESLRLYPPVVLI-LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATN  384 (452)
Q Consensus       306 ~~l~~l~a~i~E~lRl~~~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~  384 (452)
                      .+||||+|+|+|++|++|++|.. +|.+++|+.|+||.|||||.|++++|++||||++| +||++|+||||++++  +.+
T Consensus       343 ~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw-~dP~eF~PERFl~~~--d~~  419 (489)
T KOG0156|consen  343 PKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVW-EDPEEFKPERFLDSN--DGK  419 (489)
T ss_pred             ccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccC-CCccccChhhhcCCc--ccc
Confidence            99999999999999999999986 99999999999999999999999999999999999 999999999999874  111


Q ss_pred             CCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCC-ccccCceeeeeecCCCceEEEEeC
Q 012962          385 NNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPT-YVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       385 ~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~-~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      .....++|||.|+|.|||..+|++++.++++.|+++|+|+++++ .+..... .++..+.++.+...+|
T Consensus       420 ~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~~~d~~e~~-~~~~~~~pl~~~~~~r  487 (489)
T KOG0156|consen  420 GLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGGKVDMEEAG-LTLKKKKPLKAVPVPR  487 (489)
T ss_pred             CCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCCCCCCcccc-cceecCCcceeeeecC
Confidence            24568999999999999999999999999999999999999876 2222333 5556665666655543


No 2  
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=4.7e-75  Score=566.60  Aligned_cols=427  Identities=39%  Similarity=0.724  Sum_probs=349.1

Q ss_pred             CchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchh--hhhhhhccCceecccCchHHHHHhhhc
Q 012962           20 VSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPR--EYTKKLLGNGLVTAQGEKWFKQRKLAN   97 (452)
Q Consensus        20 ~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~--~~~~~~~g~~l~~~~g~~~~~~R~~~~   97 (452)
                      +...+.+|+++||++|.+++|+.+.|+|+||+++++++.++. .+..++..  ......+|.++++.+|+.|+++|+++.
T Consensus        82 ~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~~~~-~~~~r~~~~~~~~~~~~g~~l~~~~g~~Wk~~Rk~~~  160 (516)
T PLN02290         82 LLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLTKYN-TVTGKSWLQQQGTKHFIGRGLLMANGADWYHQRHIAA  160 (516)
T ss_pred             cchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHhcCC-CCCCCcchhhhHHHHHhcCCccccCchHHHHHHhhcc
Confidence            445678999999999999999999999999999999998764 34333321  122334678899999999999999999


Q ss_pred             CCCChHHHhhHHHHHHHHHHHHHHHHhhc---CCCceehHHHHHHhhHHHHHHHHhcCccccchhhHHHHHHHHHHHHhc
Q 012962           98 HAFHAETLKSMIPDMIASAEMMLDRWRDN---EGQEIDVYQEFKILTLEAISRTAFGSSYLEGENIFNMLTKLTFFISKN  174 (452)
Q Consensus        98 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~---~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~  174 (452)
                      +.|+.++++.+.+.+.++++.+++.|.+.   ++..+|+.+.+..+++++++.++||.+++..++.......+.......
T Consensus       161 ~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~  240 (516)
T PLN02290        161 PAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTEVEIGEYMTRLTADIISRTEFDSSYEKGKQIFHLLTVLQRLCAQA  240 (516)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEhHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999753   235799999999999999999999998865544444443333322222


Q ss_pred             cccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHHHHHHHhccCC-ccccCCCHHHHHH
Q 012962          175 EYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLLGVLMQAYHNV-DETLKISLDDLID  253 (452)
Q Consensus       175 ~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~ls~~~i~~  253 (452)
                      .....+|.+ .+++....+......+.+.+++.+.++++++....+.......|+++.+++...+. ..+..++.+++.+
T Consensus       241 ~~~~~~p~~-~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~  319 (516)
T PLN02290        241 TRHLCFPGS-RFFPSKYNREIKSLKGEVERLLMEIIQSRRDCVEIGRSSSYGDDLLGMLLNEMEKKRSNGFNLNLQLIMD  319 (516)
T ss_pred             hhhhcCchh-hhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhccccCCCCCCCCHHHHHH
Confidence            122234444 34443333445556677888888988887765433221124579999999864422 1123488999999


Q ss_pred             HHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCCChhhhccchhHHHHHHhhhcCCCCcccccceec
Q 012962          254 ECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQQSPNADNISRLKIMSMIINESLRLYPPVVLILRKVK  333 (452)
Q Consensus       254 ~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~R~~~  333 (452)
                      ++..+++||+|||+++++|++++|++||++|+|+|+||+++++++.++.+++++||||+|||+||||++|+++.++|.+.
T Consensus       320 ~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~l~~lpYl~avi~EtlRl~p~~~~~~R~~~  399 (516)
T PLN02290        320 ECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGETPSVDHLSKLTLLNMVINESLRLYPPATLLPRMAF  399 (516)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCHHHHhcChHHHHHHHHHHHcCCCccccceeec
Confidence            99999999999999999999999999999999999999999997789999999999999999999999999998899999


Q ss_pred             cceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCCccccccCCCCCCccchHHHHHHHHHH
Q 012962          334 KEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNMAAFIPFGLGPRTCVGFNYAIMEAKIA  413 (452)
Q Consensus       334 ~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~  413 (452)
                      +|++++||.|||||.|+++.+++||||++||+||++|+||||++++.    .....++|||.|+|.|+|++||++|++++
T Consensus       400 ~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~----~~~~~~~pFG~G~R~C~G~~lA~~el~l~  475 (516)
T PLN02290        400 EDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF----APGRHFIPFAAGPRNCIGQAFAMMEAKII  475 (516)
T ss_pred             CCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC----CCCCeEecCCCCCCCCccHHHHHHHHHHH
Confidence            99999999999999999999999999999966999999999995421    12346999999999999999999999999


Q ss_pred             HHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEeC
Q 012962          414 LSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       414 l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      ++.|+++|+++++++.........+++|+++++|++++|
T Consensus       476 la~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  514 (516)
T PLN02290        476 LAMLISKFSFTISDNYRHAPVVVLTIKPKYGVQVCLKPL  514 (516)
T ss_pred             HHHHHHhceEeeCCCcccCccceeeecCCCCCeEEEEeC
Confidence            999999999999887544444568899999999999987


No 3  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=2.7e-74  Score=531.85  Aligned_cols=438  Identities=28%  Similarity=0.470  Sum_probs=345.8

Q ss_pred             cCCCCCccc---cccccC--CCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCC--Cch-hhhhhh
Q 012962            4 ETMRSPMEL---SHQIYP--RVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPK--REP-REYTKK   75 (452)
Q Consensus         4 ~~~~~~~~~---~~~~~~--~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~--~~~-~~~~~~   75 (452)
                      ...|.|.|+   +..+..  .+.....+.+.+||+++.++.+.+|.++|+||+++++|+.++-+.|..  +.. .+.-..
T Consensus        33 i~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d~~~~  112 (499)
T KOG0158|consen   33 IPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGDPEDP  112 (499)
T ss_pred             CCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCCCCCc
Confidence            456777775   333322  234444455555599999999999999999999999999988777866  331 111112


Q ss_pred             hccCceecccCchHHHHHhhhcCCCChHHHhhHHHHHHHHHHHHHHHHhhcC--CCceehHHHHHHhhHHHHHHHHhcCc
Q 012962           76 LLGNGLVTAQGEKWFKQRKLANHAFHAETLKSMIPDMIASAEMMLDRWRDNE--GQEIDVYQEFKILTLEAISRTAFGSS  153 (452)
Q Consensus        76 ~~g~~l~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~--~~~vdl~~~~~~~~~~~~~~~~fG~~  153 (452)
                      +...+++..+|+.||++|..++|.|+..+++++.+.++++++++++.+.+..  +..+++.+.+.+++.|+|+.++||.+
T Consensus       113 l~~~~Lf~~~g~~WK~lR~~lsP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~~~yT~DVI~~~AfG~~  192 (499)
T KOG0158|consen  113 LSALNLFFLRGERWKRLRTKLSPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDLCARYTTDVIGSCAFGLD  192 (499)
T ss_pred             ccccCchhccCchHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHhHhhcccc
Confidence            3336789999999999999999999999999999999999999999998752  24789999999999999999999998


Q ss_pred             cccch----hhHHHHHHHHHHHHhcc-----ccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcC
Q 012962          154 YLEGE----NIFNMLTKLTFFISKNE-----YRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVES  224 (452)
Q Consensus       154 ~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  224 (452)
                      .+.-.    .+..........+....     ....+|.+...+  ..........+.+.+.+.+.++.|..+   +   .
T Consensus       193 ~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~l--~~~~~~~~~~~~~~~~v~~~v~~R~~~---~---~  264 (499)
T KOG0158|consen  193 ANSLRDPKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALPL--RVKLFPEDVTDFFRKLVNSRVEQREKE---N---I  264 (499)
T ss_pred             hhhhcCchHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHhh--hcccChHHHHHHHHHHHHHHHHHHHhc---C---C
Confidence            76422    22221222211111110     112223331221  112334455555666666666666221   1   1


Q ss_pred             CcccHHHHHHHhccC---Ccccc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCC-
Q 012962          225 DGNDLLGVLMQAYHN---VDETL-KISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQQS-  299 (452)
Q Consensus       225 ~~~~~~~~ll~~~~~---~~~~~-~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~~~-  299 (452)
                      ..+|+++.+++...+   ..+.. .+|.+||+++++.+++||.||||++|++++|+|++||++|+|||+||++++.+.. 
T Consensus       265 ~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~~~~~  344 (499)
T KOG0158|consen  265 ERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALYELAKNPDVQDKLREEIDEVLEEKEG  344 (499)
T ss_pred             CCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCC
Confidence            789999999998753   11122 5999999999999999999999999999999999999999999999999977544 


Q ss_pred             CChhhhccchhHHHHHHhhhcCCCCcccccceeccceecC-cEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCC
Q 012962          300 PNADNISRLKIMSMIINESLRLYPPVVLILRKVKKEVKLG-KFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGG  378 (452)
Q Consensus       300 ~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~R~~~~d~~l~-g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~  378 (452)
                      +++|.+++|+||++||+||||+||++|.+-|.+++|++++ ++.||||+.|.++.+++||||++| |||++|+||||.++
T Consensus       345 ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~-p~Pe~F~PERF~~~  423 (499)
T KOG0158|consen  345 LTYDSLSKLKYLDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYW-PEPEKFKPERFEEE  423 (499)
T ss_pred             CCHHHHhCCcHHHHHHHHHHhhCCCcccccceecCceecCCCeEeCCCCEEEeecccccCCcccC-CCcccCCCccCCCC
Confidence            9999999999999999999999999999999999999999 999999999999999999999999 99999999999977


Q ss_pred             CcccccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccccCce---eeeeecCCCceEEEEeC
Q 012962          379 VANATNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHSPAS---IITLRPQHGLQVLLHAL  452 (452)
Q Consensus       379 ~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~---~~~~~p~~~~~v~~~~~  452 (452)
                      +.+.  .++..|+|||.|||.|+|.+||.+|+|+.|++||++|+++..+.....-..   .+++.|++|+.+++++|
T Consensus       424 ~~~~--~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~~~~~~~~~~~~l~pk~gi~Lkl~~r  498 (499)
T KOG0158|consen  424 NNKS--RHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTIIPLEGDPKGFTLSPKGGIWLKLEPR  498 (499)
T ss_pred             cccc--cCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcccCcccCCccceeeecCCceEEEEEeC
Confidence            5442  577899999999999999999999999999999999999988843222223   57899999999999987


No 4  
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=9.3e-73  Score=541.26  Aligned_cols=443  Identities=35%  Similarity=0.590  Sum_probs=361.1

Q ss_pred             cCCCCCccc---ccccc---CCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCc-hhhhhhhh
Q 012962            4 ETMRSPMEL---SHQIY---PRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKRE-PREYTKKL   76 (452)
Q Consensus         4 ~~~~~~~~~---~~~~~---~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~-~~~~~~~~   76 (452)
                      ..+|.++|+   .+.+.   .++..++.++..+||++|+.|+|+.++++++||+.+++|+.+....+.+.+ +...+..+
T Consensus        37 ~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~~~~~  116 (497)
T KOG0157|consen   37 PPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPESLKPW  116 (497)
T ss_pred             CCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHHHHHH
Confidence            456777786   33443   357788999999999999999999999999999999999976555566666 44488899


Q ss_pred             ccCceecccCchHHHHHhhhcCCCChHHHhhHHHHHHHHHHHHHHHHhhc-CCCceehHHHHHHhhHHHHHHHHhcCcc-
Q 012962           77 LGNGLVTAQGEKWFKQRKLANHAFHAETLKSMIPDMIASAEMMLDRWRDN-EGQEIDVYQEFKILTLEAISRTAFGSSY-  154 (452)
Q Consensus        77 ~g~~l~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-~~~~vdl~~~~~~~~~~~~~~~~fG~~~-  154 (452)
                      +|.|+++++|+.|.++|+++.++|+.+.++.+...+.++...++..+... .+..+|+.+.+.++++|+++.+++|... 
T Consensus       117 lG~gll~~~g~~W~~~Rk~~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~~~~G~~~~  196 (497)
T KOG0157|consen  117 LGDGLLFSDGEKWHKHRKLLTPAFHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRLTLDIICKTAMGPESL  196 (497)
T ss_pred             hcCccccCCchHHHHHHhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999999999988888777664 2333999999999999999999999322 


Q ss_pred             c-cchhhHHHHHHHHHHHHhcccccccc-ccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCc--CCcccHH
Q 012962          155 L-EGENIFNMLTKLTFFISKNEYRVRIP-VIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVE--SDGNDLL  230 (452)
Q Consensus       155 ~-~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~  230 (452)
                      + +.+.....+.++.............| ....+......++.+++.+.+.+++.++|+++++....+...  ....|++
T Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~~~~~~~~~~d~L  276 (497)
T KOG0157|consen  197 DAEGPELFEYVQAFDDLTELISKRINLPLGTKFLYGLKSERKLKKARKILHDFLEKIIRERREELEKEGSGEEKKRLDFL  276 (497)
T ss_pred             cccCCcccHHHHHHHHHHHHHHHHHcCchhhhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhHH
Confidence            2 22233333333333333333344445 331222222567788899999999999999998775543221  2457777


Q ss_pred             HHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCC--Chhhhccc
Q 012962          231 GVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQQSP--NADNISRL  308 (452)
Q Consensus       231 ~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~~~~--~~~~~~~l  308 (452)
                      +.+.....     ..+++++|.+++..+++||+||||++++|+++.|+.||++|+|+++|+++++++...  +....++|
T Consensus       277 ~~~~~~~~-----~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~m  351 (497)
T KOG0157|consen  277 DTLLLEED-----KPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQM  351 (497)
T ss_pred             HHHHHhcc-----CCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhhh
Confidence            75333222     369999999999999999999999999999999999999999999999999985433  33333369


Q ss_pred             hhHHHHHHhhhcCCCCcccccceeccceec-CcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCC
Q 012962          309 KIMSMIINESLRLYPPVVLILRKVKKEVKL-GKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNM  387 (452)
Q Consensus       309 ~~l~a~i~E~lRl~~~~~~~~R~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~  387 (452)
                      +||++||+||||+||++|.+.|.+.+|++| +||.||||+.|+++++++|||+.+|++||++|+||||+++..... +++
T Consensus       352 ~yl~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~-~~~  430 (497)
T KOG0157|consen  352 KYLEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAK-RHP  430 (497)
T ss_pred             HHHHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCC-CCC
Confidence            999999999999999999999999999999 589999999999999999999999977999999999997544332 467


Q ss_pred             ccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEeC
Q 012962          388 AAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       388 ~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      .+|+|||+|+|.|+|++||++|+|+++++++++|+|++.++....+....+++|++|++|++++|
T Consensus       431 ~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~v~~~~r  495 (497)
T KOG0157|consen  431 FAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDKPKPVPELTLRPKNGLKVKLRPR  495 (497)
T ss_pred             ccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCCceeeeEEEEEecCCeEEEEEeC
Confidence            89999999999999999999999999999999999999887645667788999999999999987


No 5  
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=9.1e-72  Score=545.30  Aligned_cols=426  Identities=27%  Similarity=0.452  Sum_probs=338.8

Q ss_pred             CCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhccCceecccCchHHHHHhhhc
Q 012962           18 PRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLGNGLVTAQGEKWFKQRKLAN   97 (452)
Q Consensus        18 ~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g~~l~~~~g~~~~~~R~~~~   97 (452)
                      +.++..+.+|+++||+||++++|+.++++|+||+.++++|..++..|.+......+....+.++++.+|+.|+.+|+.+.
T Consensus       151 g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g~~l~~~dge~wr~rRr~l~  230 (633)
T PLN02738        151 EAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMGKGLIPADGEIWRVRRRAIV  230 (633)
T ss_pred             chHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccCCceecCCcHHHHHHHHhcc
Confidence            34678899999999999999999999999999999999999766667776543333344567888889999999999999


Q ss_pred             CCCChHHHhhHHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcCcccc---chhhHHHHHHHHHHHH
Q 012962           98 HAFHAETLKSMIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGSSYLE---GENIFNMLTKLTFFIS  172 (452)
Q Consensus        98 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~---~~~~~~~~~~~~~~~~  172 (452)
                      +.|+.+.+..+.+.+.+.++.+++.|.+.  .+..+|+.+.+..+++|+++.++||.+++.   ++.+.+.+........
T Consensus       231 p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~~~~~~~~~~~~~~~~  310 (633)
T PLN02738        231 PALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDTGIVEAVYTVLREAE  310 (633)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999763  467899999999999999999999998763   2233333333222221


Q ss_pred             hcccccc----ccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCC-------CcCCcccHHHHHHHhccCCc
Q 012962          173 KNEYRVR----IPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGE-------VESDGNDLLGVLMQAYHNVD  241 (452)
Q Consensus       173 ~~~~~~~----~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~  241 (452)
                      ......+    +|.+ ..++. ..++..+..+.+.+++.++++.++.......       ......|+++.|++..    
T Consensus       311 ~~~~~~~~~~~~p~~-~~l~~-~~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~dil~~Ll~~~----  384 (633)
T PLN02738        311 DRSVSPIPVWEIPIW-KDISP-RQRKVAEALKLINDTLDDLIAICKRMVEEEELQFHEEYMNERDPSILHFLLASG----  384 (633)
T ss_pred             HHhhcchhhhhhhHH-hhhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhcccccccchHHHHHHHcC----
Confidence            1111111    2222 11211 1233344455555666665554332111100       0113468999998752    


Q ss_pred             cccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCCChhhhccchhHHHHHHhhhcC
Q 012962          242 ETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQQSPNADNISRLKIMSMIINESLRL  321 (452)
Q Consensus       242 ~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl  321 (452)
                        ..++++++.++++.+++||+|||+++++|++++|++||++|+|||+||++++++..++++++++||||+|||+|+||+
T Consensus       385 --~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~~~~~t~edL~kLPYL~AVIkEtLRL  462 (633)
T PLN02738        385 --DDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGDRFPTIEDMKKLKYTTRVINESLRL  462 (633)
T ss_pred             --CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCCHHHHccCHHHHHHHHHHHhc
Confidence              258999999999999999999999999999999999999999999999999987778999999999999999999999


Q ss_pred             CCCcccccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcc-cccCCCccccccCCCCCCc
Q 012962          322 YPPVVLILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVAN-ATNNNMAAFIPFGLGPRTC  400 (452)
Q Consensus       322 ~~~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~-~~~~~~~~~~~Fg~G~~~C  400 (452)
                      +|+++.++|++.+|++++||.|||||.|+++.+.+||||++| +||++|+||||+.+... ........++|||.|+|.|
T Consensus       463 ~p~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~if-pdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~C  541 (633)
T PLN02738        463 YPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHW-DDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKC  541 (633)
T ss_pred             CCCccccceeeccCceECCEEECCCCEEEecHHHHhCCcccc-CCccccCcccCCCCCCCccccCCCCceeCCCCCCCCC
Confidence            999999899999999999999999999999999999999999 99999999999853221 1112345799999999999


Q ss_pred             cchHHHHHHHHHHHHHHHhhcEEEeCCCcc-ccCceeeeeecCCCceEEEEeC
Q 012962          401 VGFNYAIMEAKIALSMILQQYKFTLSPTYV-HSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       401 ~G~~la~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      +|++||+.|++++++.|+++|+|++.++.+ ......+++.|+++++|++++|
T Consensus       542 iG~~lA~~El~l~LA~Llr~F~~el~~~~~~~~~~~~~~~~p~~~l~v~l~~R  594 (633)
T PLN02738        542 VGDMFASFENVVATAMLVRRFDFQLAPGAPPVKMTTGATIHTTEGLKMTVTRR  594 (633)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCeeEeCCCCCCcccccceEEeeCCCcEEEEEEC
Confidence            999999999999999999999999987642 2222346888999999999987


No 6  
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=6.7e-72  Score=538.80  Aligned_cols=441  Identities=24%  Similarity=0.333  Sum_probs=339.2

Q ss_pred             CcCCCCCccc---cccccCCCchHHHHHHHH----hCCeeE---EecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhh
Q 012962            3 NETMRSPMEL---SHQIYPRVSPHVYSWIKL----YGKNFL---MWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREY   72 (452)
Q Consensus         3 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----yG~v~~---~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~   72 (452)
                      +...|.++|+   ++.+.++... +.++..+    ||..+.   .++|+.++++|+||+++++||.++...|.++.....
T Consensus        32 ~~p~p~~~pl~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~  110 (500)
T PLN02169         32 GQPILKNWPFLGMLPGMLHQIPR-IYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKK  110 (500)
T ss_pred             CCCCCCCCCcccchHHHHHccCc-HHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHH
Confidence            3456778885   4445544433 4444444    786554   688999999999999999999886666777653334


Q ss_pred             hhhhccCceecccCchHHHHHhhhcCCCChHHHhh--HHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHH
Q 012962           73 TKKLLGNGLVTAQGEKWFKQRKLANHAFHAETLKS--MIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRT  148 (452)
Q Consensus        73 ~~~~~g~~l~~~~g~~~~~~R~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~  148 (452)
                      +..++|.|+++++|+.|+++|+++.++|+...+..  +.+.+.+.++.+++.+.+.  .+..+|+.+.+.++++|+++.+
T Consensus       111 ~~~~~g~gl~~~~g~~Wr~~Rk~l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~  190 (500)
T PLN02169        111 IFDVLGEGILTVDFELWEDLRKSNHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTSSIL  190 (500)
T ss_pred             HHHhhcCcccccCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHHHhh
Confidence            44567899999999999999999999999887754  3366777778888777643  3567999999999999999999


Q ss_pred             HhcCccccch------hhHHHHHHHHHHHHhccccccccccc----cccccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 012962          149 AFGSSYLEGE------NIFNMLTKLTFFISKNEYRVRIPVIG----KLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVM  218 (452)
Q Consensus       149 ~fG~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~P~l~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  218 (452)
                      +||.+.+..+      .+...........   ......|++.    .+++....+...+..+.+.+++.++|+++++...
T Consensus       191 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~  267 (500)
T PLN02169        191 MTGYDPMSLSIEMLEVEFGEAADIGEEAI---YYRHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSRRKEEI  267 (500)
T ss_pred             eeCCCccccCCCCCCCHHHHHHHHHHHHH---HhHHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9998764211      2222222211111   1122233221    1222333456678888899999999988875422


Q ss_pred             c-CCCcCCcccHHHHHHHhccCCcc-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhC
Q 012962          219 T-GEVESDGNDLLGVLMQAYHNVDE-TLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFG  296 (452)
Q Consensus       219 ~-~~~~~~~~~~~~~ll~~~~~~~~-~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~  296 (452)
                      . .+.+....|+++.+++......+ ...++++++.+++..+++||+|||+++++|++++|++||++|+||++||++++ 
T Consensus       268 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v~-  346 (500)
T PLN02169        268 SRAETEPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKF-  346 (500)
T ss_pred             ccccccCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhC-
Confidence            1 11111347899999876422101 12478899999999999999999999999999999999999999999999874 


Q ss_pred             CCCCChhhhccchhHHHHHHhhhcCCCCcccccceeccceec-CcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCC
Q 012962          297 QQSPNADNISRLKIMSMIINESLRLYPPVVLILRKVKKEVKL-GKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERF  375 (452)
Q Consensus       297 ~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~R~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rf  375 (452)
                          +.+++.+||||+|||+||||++|++|.+.|.+.+|.++ +||.|||||.|++++|++||||++||+||++|+||||
T Consensus       347 ----~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRf  422 (500)
T PLN02169        347 ----DNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERW  422 (500)
T ss_pred             ----CHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCcccc
Confidence                67999999999999999999999999998888777665 9999999999999999999999999889999999999


Q ss_pred             CCCCcccccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEeC
Q 012962          376 AGGVANATNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       376 l~~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      ++++.......+..|+|||+|+|.|+|++||++|++++++.|+++|+++++++.+......++++|+++++|++++|
T Consensus       423 l~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~l~l~~~  499 (500)
T PLN02169        423 ISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGHKIEAIPSILLRMKHGLKVTVTKK  499 (500)
T ss_pred             CCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCCCcccccceEEecCCCEEEEEEeC
Confidence            97543321113568999999999999999999999999999999999999876543334457889999999999987


No 7  
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=1.2e-71  Score=541.18  Aligned_cols=444  Identities=20%  Similarity=0.317  Sum_probs=342.8

Q ss_pred             CCCCccc---cccccCCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhc---cC
Q 012962            6 MRSPMEL---SHQIYPRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLL---GN   79 (452)
Q Consensus         6 ~~~~~~~---~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~---g~   79 (452)
                      +|.++|+   .+.+...++.++.+|+++||++|++++|+.++|+|+||+++++++.+++..|..++.......+.   +.
T Consensus        40 gp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~  119 (516)
T PLN02183         40 GPKGLPIIGNMLMMDQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAISYLTYDRAD  119 (516)
T ss_pred             CCCCCCeeccHHhcCCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchhccccCCCc
Confidence            5566775   34444456788999999999999999999999999999999999998766676654322222222   34


Q ss_pred             ceecccCchHHHHHhh-hcCCCChHHHhhHHHHHHHHHHHHHHHHhhcCCCceehHHHHHHhhHHHHHHHHhcCccccc-
Q 012962           80 GLVTAQGEKWFKQRKL-ANHAFHAETLKSMIPDMIASAEMMLDRWRDNEGQEIDVYQEFKILTLEAISRTAFGSSYLEG-  157 (452)
Q Consensus        80 ~l~~~~g~~~~~~R~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~-  157 (452)
                      +++..+|+.|+++|++ +.++|+.+.++.+.+. .++++.+++.|....+.++|+.+.+..+++++++.++||.+.+.. 
T Consensus       120 ~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~vi~~~~fG~~~~~~~  198 (516)
T PLN02183        120 MAFAHYGPFWRQMRKLCVMKLFSRKRAESWASV-RDEVDSMVRSVSSNIGKPVNIGELIFTLTRNITYRAAFGSSSNEGQ  198 (516)
T ss_pred             eEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHhHhhcCcccchH
Confidence            5777889999999998 5789999988888885 568899999996544678999999999999999999999977542 


Q ss_pred             hhhHHHHHHHHHHHHhcccccccccccccc-ccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCC----CcCCcccHHHH
Q 012962          158 ENIFNMLTKLTFFISKNEYRVRIPVIGKLV-KTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGE----VESDGNDLLGV  232 (452)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~  232 (452)
                      +++.+.+..+...+........+|++ .++ +....++..+..+.+.+++.++++++.+....++    ......|+++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~l~~  277 (516)
T PLN02183        199 DEFIKILQEFSKLFGAFNVADFIPWL-GWIDPQGLNKRLVKARKSLDGFIDDIIDDHIQKRKNQNADNDSEEAETDMVDD  277 (516)
T ss_pred             HHHHHHHHHHHHHhCCccHHHhcchh-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccHHHH
Confidence            23333333333322222233455655 332 2222345556677788888888877654322211    01134689999


Q ss_pred             HHHhccCCc---------cccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhC-CCCCCh
Q 012962          233 LMQAYHNVD---------ETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFG-QQSPNA  302 (452)
Q Consensus       233 ll~~~~~~~---------~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~-~~~~~~  302 (452)
                      +++...+..         ....++++++.+++..+++||+|||+++++|++++|++||++|+|+++||+++++ +..++.
T Consensus       278 ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~~v~~~~~~~~~  357 (516)
T PLN02183        278 LLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLNRRVEE  357 (516)
T ss_pred             HHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCH
Confidence            998543210         1235899999999999999999999999999999999999999999999999998 456899


Q ss_pred             hhhccchhHHHHHHhhhcCCCCcccccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCccc
Q 012962          303 DNISRLKIMSMIINESLRLYPPVVLILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANA  382 (452)
Q Consensus       303 ~~~~~l~~l~a~i~E~lRl~~~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~  382 (452)
                      +++++||||+|||+||||++|++|++.|.+.+|++++||.|||||+|+++.+++||||++| +||++|+||||++++...
T Consensus       358 ~~l~~L~yl~avi~EtlRl~p~~p~~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~-~dP~~F~PeRfl~~~~~~  436 (516)
T PLN02183        358 SDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSW-EDPDTFKPSRFLKPGVPD  436 (516)
T ss_pred             HHhccChHHHHHHHHHhccCCCccceeeeccCceeECCEEECCCCEEEEehhhhcCCcccc-CCccccCchhhCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999654322


Q ss_pred             ccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCcccc-----CceeeeeecCCCceEEEEeC
Q 012962          383 TNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHS-----PASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       383 ~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~-----~~~~~~~~p~~~~~v~~~~~  452 (452)
                      .......++|||.|+|.|+|++||++|++++++.|+++|++++.++....     .....+..+...+.+.+++|
T Consensus       437 ~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  511 (516)
T PLN02183        437 FKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR  511 (516)
T ss_pred             ccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence            11234579999999999999999999999999999999999987763211     11122322344667777665


No 8  
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=3.7e-72  Score=542.13  Aligned_cols=432  Identities=22%  Similarity=0.357  Sum_probs=338.5

Q ss_pred             CCCCCccc---cccccCCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhh-hhhccCc
Q 012962            5 TMRSPMEL---SHQIYPRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYT-KKLLGNG   80 (452)
Q Consensus         5 ~~~~~~~~---~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~-~~~~g~~   80 (452)
                      .+|.++|+   ++.+.++++.++.+|+++||++|++++|+.+.|+++||+++++++.++...|.+++..... ...++.|
T Consensus        32 pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~~~~~~~  111 (482)
T PTZ00404         32 KGPIPIPILGNLHQLGNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIKHGTFYHG  111 (482)
T ss_pred             CCCCCCCeeccHhhhcccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceeeeeccCCc
Confidence            45556775   5566678999999999999999999999999999999999999998765556554432222 2234788


Q ss_pred             eecccCchHHHHHhhhcCCCChHHHhhHHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcCccccch
Q 012962           81 LVTAQGEKWFKQRKLANHAFHAETLKSMIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGSSYLEGE  158 (452)
Q Consensus        81 l~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~  158 (452)
                      +++.+|+.|+++|+++.++|+.+.++.+.+.+.+.++.+++.|.+.  .+..+|+.+.+..+++++++.++||.+.+..+
T Consensus       112 l~~~~g~~w~~~Rk~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~  191 (482)
T PTZ00404        112 IVTSSGEYWKRNREIVGKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKYIFNEDISFDE  191 (482)
T ss_pred             eeccChHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcccccccc
Confidence            8999999999999999999999999999999999999999999753  35679999999999999999999999875321


Q ss_pred             h-----hHHHHHHHHHHHHhcc---ccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHH
Q 012962          159 N-----IFNMLTKLTFFISKNE---YRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLL  230 (452)
Q Consensus       159 ~-----~~~~~~~~~~~~~~~~---~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  230 (452)
                      +     ...........+....   ....++.+...+ ........+..+.+.+++.+.++++++....    ....|++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~dll  266 (482)
T PTZ00404        192 DIHNGKLAELMGPMEQVFKDLGSGSLFDVIEITQPLY-YQYLEHTDKNFKKIKKFIKEKYHEHLKTIDP----EVPRDLL  266 (482)
T ss_pred             ccchhHHHHHHHHHHHHHHHhCCCchhhhhhHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CCcccHH
Confidence            1     1122222222221111   111112110000 0011122345566777777766665443211    1357999


Q ss_pred             HHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCCChhhhccch
Q 012962          231 GVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ-QSPNADNISRLK  309 (452)
Q Consensus       231 ~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~-~~~~~~~~~~l~  309 (452)
                      +.|+++..+.   .....+++++++..+++||+|||+++++|++++|++||++|+||++||++++++ ..++.+++++||
T Consensus       267 ~~ll~~~~~~---~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~L~  343 (482)
T PTZ00404        267 DLLIKEYGTN---TDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRNKVLLSDRQSTP  343 (482)
T ss_pred             HHHHHHhccC---CcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCCCCCccccccCh
Confidence            9999875321   122334589999999999999999999999999999999999999999999984 568999999999


Q ss_pred             hHHHHHHhhhcCCCCccc-ccceeccceec-CcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCC
Q 012962          310 IMSMIINESLRLYPPVVL-ILRKVKKEVKL-GKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNM  387 (452)
Q Consensus       310 ~l~a~i~E~lRl~~~~~~-~~R~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~  387 (452)
                      ||+|||+||||++|++|. ++|.+.+|+++ +||.|||||.|+++.+++||||++| +||++|+||||+++      ...
T Consensus       344 yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~-~dP~~F~PeRwl~~------~~~  416 (482)
T PTZ00404        344 YTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYF-ENPEQFDPSRFLNP------DSN  416 (482)
T ss_pred             HHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCcccc-CCccccCccccCCC------CCC
Confidence            999999999999999997 59999999999 9999999999999999999999999 99999999999964      245


Q ss_pred             ccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccc--cCceeeeeecCCCceEEEEeC
Q 012962          388 AAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVH--SPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       388 ~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~--~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      ..++|||.|+|.|+|++||++|++++++.|+++|+++++++.+.  ......++.| ++++|.+++|
T Consensus       417 ~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~R  482 (482)
T PTZ00404        417 DAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKIDETEEYGLTLKP-NKFKVLLEKR  482 (482)
T ss_pred             CceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCCCCcccccceeecC-CCceeeeecC
Confidence            67999999999999999999999999999999999998766432  2234456664 5899999987


No 9  
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=1.3e-71  Score=537.88  Aligned_cols=441  Identities=18%  Similarity=0.299  Sum_probs=348.4

Q ss_pred             CCCCccc---cccccCCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhh-hhcc--C
Q 012962            6 MRSPMEL---SHQIYPRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTK-KLLG--N   79 (452)
Q Consensus         6 ~~~~~~~---~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~-~~~g--~   79 (452)
                      +|.++|+   ++.+..+++.++.+|+++||++|++++|+.++|+|+||+++++++.++...|.+++...... ..++  .
T Consensus        35 gp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~~~~~~~~~  114 (504)
T PLN00110         35 GPRGWPLLGALPLLGNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGATHLAYGAQD  114 (504)
T ss_pred             cCCCCCeeechhhcCCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchhhhccCCCc
Confidence            4455774   45555668999999999999999999999999999999999999998776777665322221 2233  4


Q ss_pred             ceecccCchHHHHHhhhcC-CCChHHHhhHHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcCccc-
Q 012962           80 GLVTAQGEKWFKQRKLANH-AFHAETLKSMIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGSSYL-  155 (452)
Q Consensus        80 ~l~~~~g~~~~~~R~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~~~~-  155 (452)
                      ++++.+|+.|+++|+++.+ .|+.+.++.+.+.+.+++..+++.+.+.  .++++|+.+.+..+++++++.++||.++. 
T Consensus       115 ~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~vi~~~~fg~~~~~  194 (504)
T PLN00110        115 MVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANMIGQVILSRRVFE  194 (504)
T ss_pred             eeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHHHHHHHhCCcccc
Confidence            5777789999999999984 7999999999999999999999988653  46689999999999999999999998762 


Q ss_pred             c----chhhHHHHHHHHHHHHhccccccccccccccccC-CchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHH
Q 012962          156 E----GENIFNMLTKLTFFISKNEYRVRIPVIGKLVKTH-DDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLL  230 (452)
Q Consensus       156 ~----~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  230 (452)
                      .    .+++.+.+...............+|.+ .+++.. ..+...+..+.+.+++.+.++++++.....   ....|++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~d~l  270 (504)
T PLN00110        195 TKGSESNEFKDMVVELMTTAGYFNIGDFIPSI-AWMDIQGIERGMKHLHKKFDKLLTRMIEEHTASAHER---KGNPDFL  270 (504)
T ss_pred             cCchhHHHHHHHHHHHHHHhccccHHHHcchH-hhhCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccCCChh
Confidence            1    122333333332222111122345554 232211 223445556677778888887766432211   1346899


Q ss_pred             HHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCCChhhhccch
Q 012962          231 GVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ-QSPNADNISRLK  309 (452)
Q Consensus       231 ~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~-~~~~~~~~~~l~  309 (452)
                      +.+++...+. .+..++++++.++++.+++||+|||+++++|++++|++||++|+||++|+++++++ ..++.+++++||
T Consensus       271 ~~ll~~~~~~-~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~~~~lp  349 (504)
T PLN00110        271 DVVMANQENS-TGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLVESDLPKLP  349 (504)
T ss_pred             hHHhhccccc-CCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhhcCh
Confidence            9999764332 23469999999999999999999999999999999999999999999999999884 568999999999


Q ss_pred             hHHHHHHhhhcCCCCccc-ccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccC--C
Q 012962          310 IMSMIINESLRLYPPVVL-ILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNN--N  386 (452)
Q Consensus       310 ~l~a~i~E~lRl~~~~~~-~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~--~  386 (452)
                      ||+|||+||||++|+++. ++|.+.+|++++||.|||||.|+++.+++||||++| +||++|+||||++++....+.  +
T Consensus       350 yl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~  428 (504)
T PLN00110        350 YLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVW-ENPEEFRPERFLSEKNAKIDPRGN  428 (504)
T ss_pred             HHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhc-CCcccCCcccccCCCCcccccCCC
Confidence            999999999999999998 589999999999999999999999999999999999 999999999999653321111  2


Q ss_pred             CccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCcccc--CceeeeeecCCCceEEEEeC
Q 012962          387 MAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHS--PASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       387 ~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~--~~~~~~~~p~~~~~v~~~~~  452 (452)
                      ...++|||.|+|.|+|++||+.|++++++.|+++|++++.++.+..  .....++.|+.++++++++|
T Consensus       429 ~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  496 (504)
T PLN00110        429 DFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPR  496 (504)
T ss_pred             eeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCCccCcccccccccccCCCceEeeccC
Confidence            2479999999999999999999999999999999999988774322  23456778999999999987


No 10 
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=2.9e-71  Score=538.16  Aligned_cols=443  Identities=20%  Similarity=0.319  Sum_probs=348.4

Q ss_pred             CCCCccc---cccccC-CCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhh--hccC
Q 012962            6 MRSPMEL---SHQIYP-RVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKK--LLGN   79 (452)
Q Consensus         6 ~~~~~~~---~~~~~~-~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~--~~g~   79 (452)
                      .|.++|+   .+.+.. +++.++.+|+++||++|++++|+.++++++||+++++++.+++..|.+++.......  ..+.
T Consensus        32 gp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~~~~~~~~~  111 (499)
T PLN03234         32 GPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQTMSYQGR  111 (499)
T ss_pred             CCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhhhhhccCCC
Confidence            3444675   444544 688999999999999999999999999999999999999987767777664322221  1233


Q ss_pred             ce-ecccCchHHHHHhhh-cCCCChHHHhhHHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcCccc
Q 012962           80 GL-VTAQGEKWFKQRKLA-NHAFHAETLKSMIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGSSYL  155 (452)
Q Consensus        80 ~l-~~~~g~~~~~~R~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~~~~  155 (452)
                      ++ +...++.|+++|+.+ .+.|+.+++..+.+.+.+.++.+++.|...  +++++|+.+.+..+++++++.++||.+++
T Consensus       112 ~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~  191 (499)
T PLN03234        112 ELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVCRQAFGKRYN  191 (499)
T ss_pred             ccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHHHHHhCCccc
Confidence            32 234578999999975 689999999999999999999999999643  35689999999999999999999999876


Q ss_pred             cch-hhHHHHHHHHHHH---Hhccccccccccccccc--cCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccH
Q 012962          156 EGE-NIFNMLTKLTFFI---SKNEYRVRIPVIGKLVK--THDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDL  229 (452)
Q Consensus       156 ~~~-~~~~~~~~~~~~~---~~~~~~~~~P~l~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  229 (452)
                      ..+ +..+.........   ........+|++ .+++  ....++..++.+.+.+++.+.++++.+......   ...|+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~d~  267 (499)
T PLN03234        192 EYGTEMKRFIDILYETQALLGTLFFSDLFPYF-GFLDNLTGLSARLKKAFKELDTYLQELLDETLDPNRPKQ---ETESF  267 (499)
T ss_pred             ccchhHHHHHHHHHHHHHHcCCCcHHHHhhHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CcccH
Confidence            432 2222222222211   111122334543 2221  112345667788888899998888754322111   45789


Q ss_pred             HHHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCCChhhhccc
Q 012962          230 LGVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ-QSPNADNISRL  308 (452)
Q Consensus       230 ~~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~-~~~~~~~~~~l  308 (452)
                      ++.+++...+......++++++.+++..+++||+|||+++++|++++|++||++|+|+|+||++++++ ..++++++++|
T Consensus       268 l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~l~~l  347 (499)
T PLN03234        268 IDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYVSEEDIPNL  347 (499)
T ss_pred             HHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHhcC
Confidence            99998765432122368999999999999999999999999999999999999999999999999985 56799999999


Q ss_pred             hhHHHHHHhhhcCCCCcccc-cceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCccc-ccCC
Q 012962          309 KIMSMIINESLRLYPPVVLI-LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANA-TNNN  386 (452)
Q Consensus       309 ~~l~a~i~E~lRl~~~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~-~~~~  386 (452)
                      ||++|||+|+||++|+++.. +|.+.+|++++||.|||||.|+++.+++||||++||+||++|+||||+++.... .+..
T Consensus       348 ~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~  427 (499)
T PLN03234        348 PYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQ  427 (499)
T ss_pred             hHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCC
Confidence            99999999999999999986 799999999999999999999999999999999997799999999999753321 1123


Q ss_pred             CccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCcc-----ccCceeeeeecCCCceEEEEeC
Q 012962          387 MAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYV-----HSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       387 ~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~-----~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      ...++|||+|+|+|+|+++|+.|++++++.|+++|+|+++++..     .....++++.|++++++..++|
T Consensus       428 ~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (499)
T PLN03234        428 DFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH  498 (499)
T ss_pred             cceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence            56799999999999999999999999999999999999987631     1223456778999999999886


No 11 
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=4.7e-71  Score=537.27  Aligned_cols=443  Identities=19%  Similarity=0.335  Sum_probs=348.4

Q ss_pred             CCCCccc---cccccCCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhc---cC
Q 012962            6 MRSPMEL---SHQIYPRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLL---GN   79 (452)
Q Consensus         6 ~~~~~~~---~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~---g~   79 (452)
                      .|.++|+   ++.+..+++.++.+|+++||++|++++|+.++++++||+++++++.++...|.+++.......+.   +.
T Consensus        38 gp~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~  117 (517)
T PLN02687         38 GPRGWPVLGNLPQLGPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAEHMAYNYQD  117 (517)
T ss_pred             cCCCCCccccHHhcCCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchhhhccCCce
Confidence            4455775   45566779999999999999999999999999999999999999998766777665322222221   23


Q ss_pred             ceecccCchHHHHHhhhc-CCCChHHHhhHHHHHHHHHHHHHHHHhhc-CCCceehHHHHHHhhHHHHHHHHhcCcccc-
Q 012962           80 GLVTAQGEKWFKQRKLAN-HAFHAETLKSMIPDMIASAEMMLDRWRDN-EGQEIDVYQEFKILTLEAISRTAFGSSYLE-  156 (452)
Q Consensus        80 ~l~~~~g~~~~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~-  156 (452)
                      +++..+|+.|+++|+++. +.|+.++++.+.+.+.+++..+++.|... +++++|+.+.+..+++++++.++||.++.. 
T Consensus       118 ~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~  197 (517)
T PLN02687        118 LVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQHGTAPVNLGQLVNVCTTNALGRAMVGRRVFAG  197 (517)
T ss_pred             eEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHhCcccccc
Confidence            456667999999999998 89999999999999999999999999753 356799999999999999999999988632 


Q ss_pred             --c---hhhHHHHHHHHHHHHhccccccccccccccccC-CchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHH
Q 012962          157 --G---ENIFNMLTKLTFFISKNEYRVRIPVIGKLVKTH-DDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLL  230 (452)
Q Consensus       157 --~---~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  230 (452)
                        +   ..+.+.+..+............+|.+ .+++.. ..++..+..+.+.+++.++++++++....+..  ...|++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~--~~~d~l  274 (517)
T PLN02687        198 DGDEKAREFKEMVVELMQLAGVFNVGDFVPAL-RWLDLQGVVGKMKRLHRRFDAMMNGIIEEHKAAGQTGSE--EHKDLL  274 (517)
T ss_pred             CCcchHHHHHHHHHHHHHHhccCcHHHHhhhH-HHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc--ccccHH
Confidence              1   12222222222221111112345544 233221 12345556777888888888888765332111  457999


Q ss_pred             HHHHHhccCC---ccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhC-CCCCChhhhc
Q 012962          231 GVLMQAYHNV---DETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFG-QQSPNADNIS  306 (452)
Q Consensus       231 ~~ll~~~~~~---~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~-~~~~~~~~~~  306 (452)
                      +.+++...+.   ..+..++++++.+++..+++||+|||+++++|++++|++||++|+|+++||+++++ .+.++.++++
T Consensus       275 ~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~  354 (517)
T PLN02687        275 STLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRDRLVSESDLP  354 (517)
T ss_pred             HHHHHhhccccccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHhh
Confidence            9999865431   11246999999999999999999999999999999999999999999999999988 4568999999


Q ss_pred             cchhHHHHHHhhhcCCCCccc-ccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCccc---
Q 012962          307 RLKIMSMIINESLRLYPPVVL-ILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANA---  382 (452)
Q Consensus       307 ~l~~l~a~i~E~lRl~~~~~~-~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~---  382 (452)
                      +||||+|||+|+||++|+++. ++|.+.+|++++||.|||||.|.++.+++||||++| +||++|+||||+++....   
T Consensus       355 ~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~-~dp~~F~PeRfl~~~~~~~~~  433 (517)
T PLN02687        355 QLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQW-PDPLEFRPDRFLPGGEHAGVD  433 (517)
T ss_pred             hCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccC-CCcccCCchhcCCCCCccccc
Confidence            999999999999999999997 589999999999999999999999999999999999 999999999999653211   


Q ss_pred             ccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCcccc-----CceeeeeecCCCceEEEEeC
Q 012962          383 TNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHS-----PASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       383 ~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~-----~~~~~~~~p~~~~~v~~~~~  452 (452)
                      .+.....++|||.|+|.|+|++||++|+++++++|+++|++++.++....     ......+.|+.++.|++++|
T Consensus       434 ~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R  508 (517)
T PLN02687        434 VKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPR  508 (517)
T ss_pred             cCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccC
Confidence            11234579999999999999999999999999999999999988763211     12234556667888888876


No 12 
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=4.4e-71  Score=534.85  Aligned_cols=411  Identities=19%  Similarity=0.309  Sum_probs=327.6

Q ss_pred             CCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhcc-CceecccCchHHHHHhhhc
Q 012962           19 RVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLG-NGLVTAQGEKWFKQRKLAN   97 (452)
Q Consensus        19 ~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g-~~l~~~~g~~~~~~R~~~~   97 (452)
                      +++.++.+++++||++|.+++|++++|+|+||++++++|.+++..|..+.. .....++| .++++.+|+.|+++|+++.
T Consensus        63 ~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~-~~~~~~~g~~~~~~~~g~~wr~~Rk~~~  141 (490)
T PLN02500         63 SIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYP-RSIGGILGKWSMLVLVGDMHRDMRSISL  141 (490)
T ss_pred             ChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCc-hHHHHHhCcccccccCCHHHHHHHHHHH
Confidence            466789999999999999999999999999999999999987655643321 12233445 4688889999999999999


Q ss_pred             CCCChHHHhh-HHHHHHHHHHHHHHHHhhcCCCceehHHHHHHhhHHHHHHHHhcCccccc--hhhHHHHHHHHHHHHhc
Q 012962           98 HAFHAETLKS-MIPDMIASAEMMLDRWRDNEGQEIDVYQEFKILTLEAISRTAFGSSYLEG--ENIFNMLTKLTFFISKN  174 (452)
Q Consensus        98 ~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~--~~~~~~~~~~~~~~~~~  174 (452)
                      +.|+..+++. +.+.+.+.+..+++.|..  +..+|+.+.+..+++++++.++||.+.++.  +.+...+........  
T Consensus       142 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~vd~~~~~~~~~~~vi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~--  217 (490)
T PLN02500        142 NFLSHARLRTHLLKEVERHTLLVLDSWKE--NSTFSAQDEAKKFTFNLMAKHIMSMDPGEEETEQLKKEYVTFMKGVV--  217 (490)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEehHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhhh--
Confidence            9999988876 577888888888888764  457999999999999999999999876432  111122222211110  


Q ss_pred             cccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHHHHHHHhccCCccccCCCHHHHHHH
Q 012962          175 EYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLLGVLMQAYHNVDETLKISLDDLIDE  254 (452)
Q Consensus       175 ~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ls~~~i~~~  254 (452)
                       .   .|   ..+|....++..+..+.+.+++.+.++++++....+.......|+++.+++.       ..+++++++++
T Consensus       218 -~---~~---~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~-------~~ls~~~i~~~  283 (490)
T PLN02500        218 -S---AP---LNFPGTAYRKALKSRATILKFIERKMEERIEKLKEEDESVEEDDLLGWVLKH-------SNLSTEQILDL  283 (490)
T ss_pred             -c---ch---hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcchHHHHHHhc-------cCCCHHHHHHH
Confidence             0   11   1122222344556677888888888888765433222111346899999874       24899999999


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhC------CCCCChhhhccchhHHHHHHhhhcCCCCcccc
Q 012962          255 CKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFG------QQSPNADNISRLKIMSMIINESLRLYPPVVLI  328 (452)
Q Consensus       255 ~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~------~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~  328 (452)
                      +..+++||+|||+++++|++++|++||++|+|+++||+++++      +..++.+++++||||+|||+|+||++|++|.+
T Consensus       284 ~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~avikEtlRl~P~~~~~  363 (490)
T PLN02500        284 ILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRFL  363 (490)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHHHHHHHHHhcCCCccCe
Confidence            999999999999999999999999999999999999999863      34689999999999999999999999999998


Q ss_pred             cceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccc-----cCCCccccccCCCCCCccch
Q 012962          329 LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANAT-----NNNMAAFIPFGLGPRTCVGF  403 (452)
Q Consensus       329 ~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~-----~~~~~~~~~Fg~G~~~C~G~  403 (452)
                      +|.+.+|++++||.|||||.|+++.+++||||++| +||++|+||||++++....     ..++..++|||.|+|.|+|+
T Consensus       364 ~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~  442 (490)
T PLN02500        364 HRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLY-DQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGS  442 (490)
T ss_pred             eeEeCCCceeCCEEECCCCEEEechhhcccCcccC-CCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcH
Confidence            99999999999999999999999999999999999 9999999999996533211     01346799999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEe
Q 012962          404 NYAIMEAKIALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHA  451 (452)
Q Consensus       404 ~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~  451 (452)
                      +||++|++++++.|+++|+|++.++......  ....++++++|++++
T Consensus       443 ~~A~~el~~~la~ll~~f~~~~~~~~~~~~~--~~~~~~~~l~~~~~~  488 (490)
T PLN02500        443 ELAKLEMAVFIHHLVLNFNWELAEADQAFAF--PFVDFPKGLPIRVRR  488 (490)
T ss_pred             HHHHHHHHHHHHHHHhccEEEEcCCCcceec--ccccCCCCceEEEEe
Confidence            9999999999999999999998876433222  234556799999986


No 13 
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=9e-71  Score=536.85  Aligned_cols=441  Identities=17%  Similarity=0.249  Sum_probs=337.8

Q ss_pred             CCCCccc---cccccCC--CchHHHHHHHHhC-CeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhccC
Q 012962            6 MRSPMEL---SHQIYPR--VSPHVYSWIKLYG-KNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLGN   79 (452)
Q Consensus         6 ~~~~~~~---~~~~~~~--~~~~~~~~~~~yG-~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g~   79 (452)
                      +|.++|+   ++.+.++  .+.++.+|.++|| ++|.+++|+.++|+|+||++++++|.+++..|.+++... ....++.
T Consensus        61 GP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~-~~~~l~~  139 (543)
T PLN02971         61 GPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTY-AQKILSN  139 (543)
T ss_pred             CCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCccc-chhhccC
Confidence            4445675   4455433  3677999999999 799999999999999999999999998777787765322 2334443


Q ss_pred             c----eecccCchHHHHHhhhcCC-CChHHHhhHHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcC
Q 012962           80 G----LVTAQGEKWFKQRKLANHA-FHAETLKSMIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGS  152 (452)
Q Consensus        80 ~----l~~~~g~~~~~~R~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~  152 (452)
                      +    ++..+|+.|+++|+++.+. ++...++.+.+.+.++++.+++.+.+.  ++.++|+.+.+.++++++++.++||.
T Consensus       140 ~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~  219 (543)
T PLN02971        140 GYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAIKRLMFGT  219 (543)
T ss_pred             CCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhCC
Confidence            3    6777899999999999754 555566778888888888888877542  34679999999999999999999998


Q ss_pred             cccc------ch---hhHHHHHHHHHHHHhc---ccccccccccccccc-CCchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 012962          153 SYLE------GE---NIFNMLTKLTFFISKN---EYRVRIPVIGKLVKT-HDDIESDKTEEDIRDSIIKIIKKRESNVMT  219 (452)
Q Consensus       153 ~~~~------~~---~~~~~~~~~~~~~~~~---~~~~~~P~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  219 (452)
                      ++..      ++   +..+.+..........   .....+|.+ +.++. ...+......+.+.+++.+.++++++....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  298 (543)
T PLN02971        220 RTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPML-TGLDLNGHEKIMRESSAIMDKYHDPIIDERIKMWRE  298 (543)
T ss_pred             cccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCch-hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7631      11   1122222222211111   112344544 22221 112234445566788888888877654332


Q ss_pred             CCCcCCcccHHHHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhC-CC
Q 012962          220 GEVESDGNDLLGVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFG-QQ  298 (452)
Q Consensus       220 ~~~~~~~~~~~~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~-~~  298 (452)
                      +.. ....|+++.|++...++ ....++++++.+++..+++||+|||+++++|++++|++||++|+|+|+||+++++ ++
T Consensus       299 ~~~-~~~~d~l~~ll~~~~~~-~~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v~g~~~  376 (543)
T PLN02971        299 GKR-TQIEDFLDIFISIKDEA-GQPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGKER  376 (543)
T ss_pred             cCC-CCCcCHHHHHHhhhccc-CCCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC
Confidence            211 13479999999864332 1224999999999999999999999999999999999999999999999999998 46


Q ss_pred             CCChhhhccchhHHHHHHhhhcCCCCccc-ccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCC
Q 012962          299 SPNADNISRLKIMSMIINESLRLYPPVVL-ILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAG  377 (452)
Q Consensus       299 ~~~~~~~~~l~~l~a~i~E~lRl~~~~~~-~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~  377 (452)
                      .++.+++++|||++|||+|+||++|++|. ++|.+.+|++++||.|||||.|++++|++||||++| +||++|+||||++
T Consensus       377 ~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~-~dP~~F~PeRfl~  455 (543)
T PLN02971        377 FVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVW-SDPLSFKPERHLN  455 (543)
T ss_pred             CCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhC-CCccccCcccCCC
Confidence            78999999999999999999999999998 489999999999999999999999999999999999 9999999999997


Q ss_pred             CCccc-ccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCc---cccCceeeeeecCCCceEEEEeC
Q 012962          378 GVANA-TNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTY---VHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       378 ~~~~~-~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~---~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      +..+. ....+..++|||.|+|.|+|++||+.|++++++.|+++|+|+++++.   +..+..+ ++.-++.+.+.+++|
T Consensus       456 ~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  533 (543)
T PLN02971        456 ECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETRVELMESSH-DMFLSKPLVMVGELR  533 (543)
T ss_pred             CCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCCCcchhhhcC-cccccccceeeeeec
Confidence            53321 11234579999999999999999999999999999999999987642   2222333 564445888888886


No 14 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=6.5e-71  Score=497.35  Aligned_cols=423  Identities=21%  Similarity=0.311  Sum_probs=361.0

Q ss_pred             CCCchHHHHHHHHhCCeeEEe-cCCeeEEEeCCHHHHHHHHhhCCCCCCCCc-h---hhhhhhhcc--CceecccCchHH
Q 012962           18 PRVSPHVYSWIKLYGKNFLMW-YGLEAQLVVTEPQLIKEILSDKHRAYPKRE-P---REYTKKLLG--NGLVTAQGEKWF   90 (452)
Q Consensus        18 ~~~~~~~~~~~~~yG~v~~~~-~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~-~---~~~~~~~~g--~~l~~~~g~~~~   90 (452)
                      .+.|+....++++||+||+.. +|+...|.|.+|+.+..++++.+ .++.++ .   .....+.++  .|++..+|++|.
T Consensus        73 ~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~~~~w~~~rd~~~~~~Gl~~~~G~~W~  151 (519)
T KOG0159|consen   73 TKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLLIEPWVAYRDFRGGVCGLFLLEGPEWQ  151 (519)
T ss_pred             hHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcccccchhhhhHHhhccCCCcccCCCHHHH
Confidence            457899999999999999999 88889999999999999999866 555553 1   122334444  689999999999


Q ss_pred             HHHhhhcCC-CChHHHhhHHHHHHHHHHHHHHHHhhc-----CCCceehHHHHHHhhHHHHHHHHhcCcccc-----chh
Q 012962           91 KQRKLANHA-FHAETLKSMIPDMIASAEMMLDRWRDN-----EGQEIDVYQEFKILTLEAISRTAFGSSYLE-----GEN  159 (452)
Q Consensus        91 ~~R~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~-----~~~  159 (452)
                      +.|..+++. ++++.++.+.+.+.+.+++++..+...     ...+.|+.+.+.++++..+|.++||.+++.     +++
T Consensus       152 ~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~wslEsi~~V~l~~rlG~L~~~~~~~  231 (519)
T KOG0159|consen  152 RLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYRWSLESICLVLLGTRLGLLGESPPSE  231 (519)
T ss_pred             HHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHhcccccccCCCCHH
Confidence            999999976 578999999999999999999999875     245789999999999999999999999862     233


Q ss_pred             hHHHHHHHHHHHHhccccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCc-C-CcccHHHHHHHhc
Q 012962          160 IFNMLTKLTFFISKNEYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVE-S-DGNDLLGVLMQAY  237 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-~~~~~~~~ll~~~  237 (452)
                      ....+..+..++.......+.|.++++++.+.+++..++.+.+.++....|+...+..+..... . ....+...|.++ 
T Consensus       232 a~~fi~ai~~~F~~s~~l~~~p~l~r~~~t~~wk~~~~~~D~i~~~~~~~Id~~l~~l~~~~~~~~~~~~~l~~~L~~~-  310 (519)
T KOG0159|consen  232 AQQFIDAIKKMFESSAQLMLMPSLWRYFPTKVWKDFVRAWDQIFDVGDKYIDNALEELEKQDSAGSEYTGSLLELLLRK-  310 (519)
T ss_pred             HHHHHHHHHHHHHhHHHHHhcchHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHc-
Confidence            3444555555555554555667666899998999999999999999999998887776554321 1 223444444443 


Q ss_pred             cCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC--CCCChhhhccchhHHHHH
Q 012962          238 HNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ--QSPNADNISRLKIMSMII  315 (452)
Q Consensus       238 ~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~--~~~~~~~~~~l~~l~a~i  315 (452)
                             .++.+++..+++++++||+|||+.++.|+||+|++||++|++|++||.++.+.  ..++.+++.++|||.|||
T Consensus       311 -------~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcI  383 (519)
T KOG0159|consen  311 -------ELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACI  383 (519)
T ss_pred             -------cCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHH
Confidence                   67889999999999999999999999999999999999999999999999984  678999999999999999


Q ss_pred             HhhhcCCCCcccccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCCccccccCC
Q 012962          316 NESLRLYPPVVLILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNMAAFIPFGL  395 (452)
Q Consensus       316 ~E~lRl~~~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~  395 (452)
                      |||+|+||.+|+..|...+|.+|+||.|||||.|.++.+.+.+||++| ++|++|+|||||.++.+.  .++..++|||.
T Consensus       384 KEtlRlyPv~~~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F-~~p~~F~PeRWL~~~~~~--~~pF~~LPFGf  460 (519)
T KOG0159|consen  384 KETLRLYPVVPGNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYF-PDPEEFLPERWLKPSTKT--IHPFASLPFGF  460 (519)
T ss_pred             HhhhceeccccccccccchhceeccceecCCCeEEEeehhhccChhhC-CCccccChhhhcccccCC--CCCceecCCCC
Confidence            999999999999999999999999999999999999999999999999 999999999999875422  57889999999


Q ss_pred             CCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEeC
Q 012962          396 GPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       396 G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      |+|+|+||++|++|+.+.|+.++++|+++..+..+......++..|..++.+++++|
T Consensus       461 G~R~C~GRRiAElEl~llLarllr~f~V~~~~~~pv~~~~~~il~P~~~l~f~f~~r  517 (519)
T KOG0159|consen  461 GPRMCLGRRIAELELHLLLARLLRNFKVEFLHEEPVEYVYRFILVPNRPLRFKFRPR  517 (519)
T ss_pred             CccccchHHHHHHHHHHHHHHHHHhcceeecCCCCccceeEEEEcCCCCcceeeeeC
Confidence            999999999999999999999999999998886566666778999999999999876


No 15 
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=1.6e-70  Score=534.26  Aligned_cols=441  Identities=21%  Similarity=0.341  Sum_probs=339.5

Q ss_pred             CCCCCccc---cccccCCCchHHHHHHHHh---CCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchh-hhhhhhc
Q 012962            5 TMRSPMEL---SHQIYPRVSPHVYSWIKLY---GKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPR-EYTKKLL   77 (452)
Q Consensus         5 ~~~~~~~~---~~~~~~~~~~~~~~~~~~y---G~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~-~~~~~~~   77 (452)
                      -.|.++|+   .+.+.++ +..+.+|.++|   |++|.+++|+.+.++++||+++++++.++...|.+.... .....++
T Consensus        33 pgp~~~p~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~  111 (516)
T PLN03195         33 KGPKSWPIIGAALEQLKN-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEVLL  111 (516)
T ss_pred             CCCCCCCeecchHHHHhc-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHHHh
Confidence            35666775   2233333 45677888888   899999999999999999999999998765567665432 2333456


Q ss_pred             cCceecccCchHHHHHhhhcCCCChHHHhhHHHHH-HHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcCcc
Q 012962           78 GNGLVTAQGEKWFKQRKLANHAFHAETLKSMIPDM-IASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGSSY  154 (452)
Q Consensus        78 g~~l~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~~~  154 (452)
                      |.++++.+|+.|+++|+++++.|+.++++.+.+.+ .+.++.+++.+.+.  .+..+|+.+++..+++++++.++||.++
T Consensus       112 g~~l~~~~g~~w~~~Rr~l~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~  191 (516)
T PLN03195        112 GDGIFNVDGELWRKQRKTASFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVGFGVEI  191 (516)
T ss_pred             cCeeeccCcHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHHhCCCc
Confidence            78888889999999999999999999999998876 66667777766532  3567999999999999999999999987


Q ss_pred             ccc------hhhHHHHHHHHHHHHhcccccccccc--ccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCC--CcC
Q 012962          155 LEG------ENIFNMLTKLTFFISKNEYRVRIPVI--GKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGE--VES  224 (452)
Q Consensus       155 ~~~------~~~~~~~~~~~~~~~~~~~~~~~P~l--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~  224 (452)
                      +..      ..+.+.+........   .....|.+  ..+++....+...+..+.+.+++.+.++++++....++  .+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  268 (516)
T PLN03195        192 GTLSPSLPENPFAQAFDTANIIVT---LRFIDPLWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEARKSGKK  268 (516)
T ss_pred             cccccCCCccHHHHHHHHHHHHHH---HHHhcchhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            531      122222222211111   11111221  11121111233345666788888888887765432211  011


Q ss_pred             CcccHHHHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-------
Q 012962          225 DGNDLLGVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ-------  297 (452)
Q Consensus       225 ~~~~~~~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~-------  297 (452)
                      ...|+++.+++...+.  +..++++++.++++.+++||+|||+++++|++++|++||++|+||++||++++++       
T Consensus       269 ~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~  346 (516)
T PLN03195        269 VKHDILSRFIELGEDP--DSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDP  346 (516)
T ss_pred             ccccHHHHHHhccCCC--CCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccccc
Confidence            3568999999764332  2369999999999999999999999999999999999999999999999998642       


Q ss_pred             --------------CCCChhhhccchhHHHHHHhhhcCCCCcccccceeccceec-CcEEecCCCeEEEeccccccCCCC
Q 012962          298 --------------QSPNADNISRLKIMSMIINESLRLYPPVVLILRKVKKEVKL-GKFVIPADVDITIPTLAVHHDPQI  362 (452)
Q Consensus       298 --------------~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~R~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~  362 (452)
                                    +.++++++++||||+|||+||||++|++|..+|.+.+|.++ +||.|||||.|+++.+++||||++
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~  426 (516)
T PLN03195        347 EDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYN  426 (516)
T ss_pred             cccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhccChhh
Confidence                          35789999999999999999999999999998888887666 999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCcccccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccccCceeeeeecC
Q 012962          363 WGEEFHLFKPERFAGGVANATNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHSPASIITLRPQ  442 (452)
Q Consensus       363 ~~~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~  442 (452)
                      ||+||++|+||||++++.... ..+..++|||+|+|.|+|++||++|++++++.|+++|++++.++.+.......+..|+
T Consensus       427 ~g~dP~~F~PeRwl~~~~~~~-~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~  505 (516)
T PLN03195        427 WGPDAASFKPERWIKDGVFQN-ASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHPVKYRMMTILSMA  505 (516)
T ss_pred             hccChhhcCCcccCCCCCcCC-CCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCcceeeeeeEEecC
Confidence            989999999999996422111 2445799999999999999999999999999999999999877644333344567899


Q ss_pred             CCceEEEEeC
Q 012962          443 HGLQVLLHAL  452 (452)
Q Consensus       443 ~~~~v~~~~~  452 (452)
                      ++++|++++|
T Consensus       506 ~~~~v~~~~r  515 (516)
T PLN03195        506 NGLKVTVSRR  515 (516)
T ss_pred             CCEEEEEEeC
Confidence            9999999987


No 16 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=5.5e-70  Score=523.44  Aligned_cols=434  Identities=20%  Similarity=0.290  Sum_probs=339.9

Q ss_pred             CCCCccc---ccccc-CCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhccC--
Q 012962            6 MRSPMEL---SHQIY-PRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLGN--   79 (452)
Q Consensus         6 ~~~~~~~---~~~~~-~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g~--   79 (452)
                      +|.++|+   ++++. .+++.++.+|+++||++|++++|+.++++|+||+++++++.++...|..++....+..+.+.  
T Consensus         3 gp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~~~   82 (466)
T PLN02655          3 AVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRDKS   82 (466)
T ss_pred             CCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcCCC
Confidence            5667886   45565 35899999999999999999999999999999999999999877777666533334434442  


Q ss_pred             ceecc-cCchHHHHHhhhc-CCCChHHHhhHHHHHHHHHHHHHHHHhhc----CCCceehHHHHHHhhHHHHHHHHhcCc
Q 012962           80 GLVTA-QGEKWFKQRKLAN-HAFHAETLKSMIPDMIASAEMMLDRWRDN----EGQEIDVYQEFKILTLEAISRTAFGSS  153 (452)
Q Consensus        80 ~l~~~-~g~~~~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~----~~~~vdl~~~~~~~~~~~~~~~~fG~~  153 (452)
                      ++++. +|+.|+++|+.+. +.|+...++.+.+.+.+.++.+++.+.+.    .+..+|+.+.+..+++++++.++||.+
T Consensus        83 ~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~  162 (466)
T PLN02655         83 MVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALGED  162 (466)
T ss_pred             ceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhccc
Confidence            35554 4899999998665 55777777888888888888888777542    356799999999999999999999987


Q ss_pred             cccc--hhhH------HHHHHH-HHHHHh---ccccccccccccccccCCc-hhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 012962          154 YLEG--ENIF------NMLTKL-TFFISK---NEYRVRIPVIGKLVKTHDD-IESDKTEEDIRDSIIKIIKKRESNVMTG  220 (452)
Q Consensus       154 ~~~~--~~~~------~~~~~~-~~~~~~---~~~~~~~P~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~  220 (452)
                      .+..  +++.      +.+... ...+..   ......+|.+ ++++.... +...+....+.+++..+++++++....+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  241 (466)
T PLN02655        163 VESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYL-SWIPNKSFETRVQTTEFRRTAVMKALIKQQKKRIARG  241 (466)
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhh-hhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            6531  1111      111111 111111   1122355655 44442211 1222223344567777777666543332


Q ss_pred             CCcCCcccHHHHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCC
Q 012962          221 EVESDGNDLLGVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQQSP  300 (452)
Q Consensus       221 ~~~~~~~~~~~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~~~~  300 (452)
                      .   ...|+++.+++..      ..++++++.+++..+++||+|||+++++|++++|++||++|+|+|+||+++++...+
T Consensus       242 ~---~~~d~l~~ll~~~------~~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~  312 (466)
T PLN02655        242 E---ERDCYLDFLLSEA------THLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDERV  312 (466)
T ss_pred             C---CcccHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCC
Confidence            2   3468999999763      258999999999999999999999999999999999999999999999999987669


Q ss_pred             ChhhhccchhHHHHHHhhhcCCCCcccc-cceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCC
Q 012962          301 NADNISRLKIMSMIINESLRLYPPVVLI-LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGV  379 (452)
Q Consensus       301 ~~~~~~~l~~l~a~i~E~lRl~~~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~  379 (452)
                      +.++++++|||+|||+||||++|+++.+ +|.+.+|++++||.|||||.|+++.+++||||++| +||++|+||||++++
T Consensus       313 ~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~-~~p~~F~PeR~~~~~  391 (466)
T PLN02655        313 TEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRW-ENPEEWDPERFLGEK  391 (466)
T ss_pred             CHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccC-CChhccCccccCCCC
Confidence            9999999999999999999999999987 79999999999999999999999999999999999 999999999999753


Q ss_pred             cccccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCcc-ccCceeeeeecCCCceEEEEeC
Q 012962          380 ANATNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYV-HSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       380 ~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      ...  .....++|||+|+|.|||++||..+++++++.|+++|++++.++.. ......++++|+++++|++++|
T Consensus       392 ~~~--~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  463 (466)
T PLN02655        392 YES--ADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDEEKEDTVQLTTQKLHPLHAHLKPR  463 (466)
T ss_pred             ccc--CCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCccccchhheeEeecCCcEEEEeec
Confidence            322  2346799999999999999999999999999999999999977632 2334456788999999999876


No 17 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=6.3e-70  Score=529.59  Aligned_cols=443  Identities=19%  Similarity=0.329  Sum_probs=343.3

Q ss_pred             CCCCccc---ccccc---CCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhcc-
Q 012962            6 MRSPMEL---SHQIY---PRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLG-   78 (452)
Q Consensus         6 ~~~~~~~---~~~~~---~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g-   78 (452)
                      +|.++|+   ++.+.   .++++++.+|+++||++|++++|+.++++|+||+++++++.+++..|..++... ...++| 
T Consensus        39 gp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~-~~~~~~~  117 (519)
T PLN00168         39 GPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVA-SSRLLGE  117 (519)
T ss_pred             CCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCccc-chhhhcc
Confidence            4455775   33222   347788999999999999999999999999999999999998777776655322 222334 


Q ss_pred             -Cceec--ccCchHHHHHh-hhcCCCChHHHhhHHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcC
Q 012962           79 -NGLVT--AQGEKWFKQRK-LANHAFHAETLKSMIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGS  152 (452)
Q Consensus        79 -~~l~~--~~g~~~~~~R~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~  152 (452)
                       .+++.  .+|+.|+++|| ++.++|+.++++.+.+.+.++++.+++.|.+.  .+..+|+.+.+..++.++++.++||.
T Consensus       118 ~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~ii~~~~fG~  197 (519)
T PLN00168        118 SDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFCLLVLMCFGE  197 (519)
T ss_pred             CCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC
Confidence             23443  67999999886 78899999999999999999999999999764  23468999999999999999999999


Q ss_pred             ccccchhhHHHHHHHHH-H---HHh-ccccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhc----CCCc
Q 012962          153 SYLEGENIFNMLTKLTF-F---ISK-NEYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMT----GEVE  223 (452)
Q Consensus       153 ~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~  223 (452)
                      ++++..  ...+..... .   ... ......+|.+.+.+......+..+..+.+.+++.++++++++....    +...
T Consensus       198 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  275 (519)
T PLN00168        198 RLDEPA--VRAIAAAQRDWLLYVSKKMSVFAFFPAVTKHLFRGRLQKALALRRRQKELFVPLIDARREYKNHLGQGGEPP  275 (519)
T ss_pred             CcChhh--HHHHHHHHHHHHHHhcCCCCHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccc
Confidence            876321  111111111 1   111 1122344543222211112334566778888888888877654311    1000


Q ss_pred             ----CCcccHHHHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC--
Q 012962          224 ----SDGNDLLGVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ--  297 (452)
Q Consensus       224 ----~~~~~~~~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~--  297 (452)
                          ....|+++.|++.....+.+..++++++.++++.+++||+|||+++++|++++|++||++|+|+++||++++++  
T Consensus       276 ~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~  355 (519)
T PLN00168        276 KKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQ  355 (519)
T ss_pred             cccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC
Confidence                01468999999764322223469999999999999999999999999999999999999999999999999974  


Q ss_pred             CCCChhhhccchhHHHHHHhhhcCCCCcccc-cceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCC
Q 012962          298 QSPNADNISRLKIMSMIINESLRLYPPVVLI-LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFA  376 (452)
Q Consensus       298 ~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl  376 (452)
                      +.++.+++++||||+|||+|+||++|+++.. +|.+.+|++++||.|||||.|+++.+++||||++| +||++|+||||+
T Consensus       356 ~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~-~~p~~F~PeRf~  434 (519)
T PLN00168        356 EEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREW-ERPMEFVPERFL  434 (519)
T ss_pred             CCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCcccc-CCccccCcccCC
Confidence            4689999999999999999999999999886 89999999999999999999999999999999999 999999999999


Q ss_pred             CCCccc----ccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccccC--ceeeeeecCCCceEEEE
Q 012962          377 GGVANA----TNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHSP--ASIITLRPQHGLQVLLH  450 (452)
Q Consensus       377 ~~~~~~----~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~--~~~~~~~p~~~~~v~~~  450 (452)
                      ++....    ...+...++|||.|+|+|+|++||++|++++++.|+++|+|++.++.+...  ...++..|+++++|+++
T Consensus       435 ~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (519)
T PLN00168        435 AGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKREFTTVMAKPLRARLV  514 (519)
T ss_pred             CCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCCcCChhhhceeEEeecCCcEEEEE
Confidence            643211    112345799999999999999999999999999999999999877633222  23467788889999999


Q ss_pred             eC
Q 012962          451 AL  452 (452)
Q Consensus       451 ~~  452 (452)
                      +|
T Consensus       515 ~R  516 (519)
T PLN00168        515 PR  516 (519)
T ss_pred             ec
Confidence            87


No 18 
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=1.2e-69  Score=528.41  Aligned_cols=445  Identities=15%  Similarity=0.267  Sum_probs=346.2

Q ss_pred             CCCCCccc---cccccCCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhh-hhhhhcc--
Q 012962            5 TMRSPMEL---SHQIYPRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPRE-YTKKLLG--   78 (452)
Q Consensus         5 ~~~~~~~~---~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~-~~~~~~g--   78 (452)
                      .+|.++|+   ++.+..+++.++.+|+++||++|++++|+.+.++++||+++++++.++...|.+++... .....+|  
T Consensus        35 pgp~~~pl~G~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~~~~~~~g~~  114 (514)
T PLN03112         35 PGPPRWPIVGNLLQLGPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAAVHLAYGCG  114 (514)
T ss_pred             cCCCCCCeeeeHHhcCCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcccceeeccCCC
Confidence            35666775   45556678999999999999999999999999999999999999987776777665321 1222344  


Q ss_pred             CceecccCchHHHHHhhhc-CCCChHHHhhHHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcCccc
Q 012962           79 NGLVTAQGEKWFKQRKLAN-HAFHAETLKSMIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGSSYL  155 (452)
Q Consensus        79 ~~l~~~~g~~~~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~~~~  155 (452)
                      .+++..+|+.|+.+|+++. +.|+.++++.+.+.+.+.++.+++.+.+.  .+..+|+.+.+..+++++++.++||.++.
T Consensus       115 ~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~  194 (514)
T PLN03112        115 DVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNVTRMLLGKQYF  194 (514)
T ss_pred             ceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHHHHHHcCCccc
Confidence            3356678999999999964 68999999999999999999999887543  35689999999999999999999999863


Q ss_pred             cc-----h---hhHHHHHHHHHHHHhcccccccccccccc-ccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCc
Q 012962          156 EG-----E---NIFNMLTKLTFFISKNEYRVRIPVIGKLV-KTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDG  226 (452)
Q Consensus       156 ~~-----~---~~~~~~~~~~~~~~~~~~~~~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  226 (452)
                      ..     +   .+......+............+|.+ .++ +....++..+..+.+.+++.+.++++++...........
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  273 (514)
T PLN03112        195 GAESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAW-RWLDPYGCEKKMREVEKRVDEFHDKIIDEHRRARSGKLPGGKD  273 (514)
T ss_pred             cccccchHHHHHHHHHHHHHHHHcCCCcHHHhChHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Confidence            21     1   1222222221111111122345655 233 222234455667778888888888776543221111145


Q ss_pred             ccHHHHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCCChhhh
Q 012962          227 NDLLGVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ-QSPNADNI  305 (452)
Q Consensus       227 ~~~~~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~-~~~~~~~~  305 (452)
                      .|+++.++++..++ ....++++++.+++..+++||+|||+++++|++++|++||++|+||++||+++++. +.++.+++
T Consensus       274 ~d~l~~ll~~~~~~-~~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~t~~~l  352 (514)
T PLN03112        274 MDFVDVLLSLPGEN-GKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRNRMVQESDL  352 (514)
T ss_pred             chHHHHHHHhhccc-cccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhcCCCCcCChhhh
Confidence            69999999865332 22358999999999999999999999999999999999999999999999999884 56899999


Q ss_pred             ccchhHHHHHHhhhcCCCCcccc-cceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCccc--
Q 012962          306 SRLKIMSMIINESLRLYPPVVLI-LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANA--  382 (452)
Q Consensus       306 ~~l~~l~a~i~E~lRl~~~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~--  382 (452)
                      ++||||+|||+|++|++|+++.. +|.+.+|++++||.|||||.|+++.+++||||++| +||++|+||||+.+....  
T Consensus       353 ~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~-~dP~~F~PeRf~~~~~~~~~  431 (514)
T PLN03112        353 VHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIW-DDVEEFRPERHWPAEGSRVE  431 (514)
T ss_pred             ccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccC-CChhhcCCcccCCCCCCccc
Confidence            99999999999999999999975 89999999999999999999999999999999999 999999999987542211  


Q ss_pred             -ccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccc---c--CceeeeeecCCCceEEEEeC
Q 012962          383 -TNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVH---S--PASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       383 -~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~---~--~~~~~~~~p~~~~~v~~~~~  452 (452)
                       .......++|||.|+|.|+|++||++|++++++.|+++|++++.++...   .  ....+++.+++++.+++++|
T Consensus       432 ~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  507 (514)
T PLN03112        432 ISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPR  507 (514)
T ss_pred             cccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecC
Confidence             1012357999999999999999999999999999999999998765311   1  12345556677999999887


No 19 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=1.5e-70  Score=532.25  Aligned_cols=438  Identities=30%  Similarity=0.501  Sum_probs=355.1

Q ss_pred             CCCCCccc---ccccc--CCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhh----hh
Q 012962            5 TMRSPMEL---SHQIY--PRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYT----KK   75 (452)
Q Consensus         5 ~~~~~~~~---~~~~~--~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~----~~   75 (452)
                      ..|.++|+   ++.+.  ++++.++.+|+++||++|+++++++++++|+||+++++++.+++..+........+    ..
T Consensus         2 pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~~   81 (463)
T PF00067_consen    2 PGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRGP   81 (463)
T ss_dssp             SCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHHH
T ss_pred             cCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhcccccccccccccccccccccccccc
Confidence            36788886   44544  67899999999999999999999999999999999999999876555543221222    23


Q ss_pred             hccCceecccCchHHHHHhhhcCCCChH-HHhhHHHHHHHHHHHHHHHHhhcC--CCceehHHHHHHhhHHHHHHHHhcC
Q 012962           76 LLGNGLVTAQGEKWFKQRKLANHAFHAE-TLKSMIPDMIASAEMMLDRWRDNE--GQEIDVYQEFKILTLEAISRTAFGS  152 (452)
Q Consensus        76 ~~g~~l~~~~g~~~~~~R~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~l~~~~--~~~vdl~~~~~~~~~~~~~~~~fG~  152 (452)
                      ..+.++++.+++.|+.+|+++.+.|+.. .+ .+.+.+.+.++.+++.|.+..  ...+|+.+++..+++++++.++||.
T Consensus        82 ~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~fG~  160 (463)
T PF00067_consen   82 FGGKGLFFSDGERWRRQRRLLAPAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVLFGK  160 (463)
T ss_dssp             HTTTSSTTSSHHHHHHHHHHHHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            4568899999999999999999999988 66 899999999999999998862  2369999999999999999999999


Q ss_pred             ccc-cch----hhHHHHHHHHHHHHhc--cccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCC
Q 012962          153 SYL-EGE----NIFNMLTKLTFFISKN--EYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESD  225 (452)
Q Consensus       153 ~~~-~~~----~~~~~~~~~~~~~~~~--~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  225 (452)
                      +++ .++    .+.+....+...+...  .....+|++ .+++....+...+..+.+.+++.+.++++++....+..  .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~  237 (463)
T PF00067_consen  161 DFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWL-KYLPTPLFRRFKRARDRLRKYIKEIIEERREELDDGDE--S  237 (463)
T ss_dssp             HHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH-CTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHSSSS--S
T ss_pred             eeeecccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc--c
Confidence            876 222    2333333333322221  123345644 45555556666777788899999999998887665421  6


Q ss_pred             cccHHHHHHHhc-cCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCCChh
Q 012962          226 GNDLLGVLMQAY-HNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ-QSPNAD  303 (452)
Q Consensus       226 ~~~~~~~ll~~~-~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~-~~~~~~  303 (452)
                      ..|+++.+++.. +.+ .+..++.+++.++++.+++||+|||+.+++|++++|++||++|++|++||+++.++ ..++.+
T Consensus       238 ~~d~l~~ll~~~~~~~-~~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~  316 (463)
T PF00067_consen  238 RRDLLDSLLQASSDSD-GPSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGREITFE  316 (463)
T ss_dssp             CSSHHHHHHHHHHTTT-TTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSSSHHHH
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            789999999986 332 11479999999999999999999999999999999999999999999999999974 468999


Q ss_pred             hhccchhHHHHHHhhhcCCCCcc-cccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCccc
Q 012962          304 NISRLKIMSMIINESLRLYPPVV-LILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANA  382 (452)
Q Consensus       304 ~~~~l~~l~a~i~E~lRl~~~~~-~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~  382 (452)
                      ++++||||+|||+||||++|+++ .++|.+.+|++++||.|||||.|+++.+++|+||++| +||++|+||||++++...
T Consensus       317 ~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~-~dp~~F~P~R~~~~~~~~  395 (463)
T PF00067_consen  317 DLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYF-PDPDEFDPERFLDERGIS  395 (463)
T ss_dssp             HHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTS-SSTTS--TTGGBTTTSTB
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            99999999999999999999999 6789999999999999999999999999999999999 999999999999875511


Q ss_pred             ccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccccCcee--eeeecCCCceEEE
Q 012962          383 TNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHSPASI--ITLRPQHGLQVLL  449 (452)
Q Consensus       383 ~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~--~~~~p~~~~~v~~  449 (452)
                       ......++|||.|+|.|||++||+.|++++++.|+++|+++++++.+......  .++.|+.+++|++
T Consensus       396 -~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (463)
T PF00067_consen  396 -NRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSEPEPQEQQNGFLLPPKPLKVKF  463 (463)
T ss_dssp             -CSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSSGGEEECSCSSSEEESSSEEEE
T ss_pred             -ccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCCCCCccccCceEeeCCCcEEeC
Confidence             13567899999999999999999999999999999999999977533322211  4566666888764


No 20 
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=3.3e-69  Score=522.90  Aligned_cols=442  Identities=19%  Similarity=0.333  Sum_probs=333.1

Q ss_pred             CCCCCccc---cccc-cCCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhh-ccC
Q 012962            5 TMRSPMEL---SHQI-YPRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKL-LGN   79 (452)
Q Consensus         5 ~~~~~~~~---~~~~-~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~-~g~   79 (452)
                      ..|.++|+   ++.+ ..+++.++.+|+++||++|++++|+.++++|+||+++++++.+++..|.+.+........ .|.
T Consensus        32 pgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~~~~~~~~  111 (502)
T PLN02966         32 PGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHEFISYGR  111 (502)
T ss_pred             cCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCccceeeccCc
Confidence            34556775   3444 346899999999999999999999999999999999999998766666654321111111 222


Q ss_pred             -ce-ecccCchHHHHHhh-hcCCCChHHHhhHHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcCcc
Q 012962           80 -GL-VTAQGEKWFKQRKL-ANHAFHAETLKSMIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGSSY  154 (452)
Q Consensus        80 -~l-~~~~g~~~~~~R~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~~~  154 (452)
                       ++ +..+|+.|+.+|++ +.+.|+.+.+..+.+.+.++++.+++.|.+.  .++.+|+.+.+..+++++++.++||.++
T Consensus       112 ~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dvi~~~~fG~~~  191 (502)
T PLN02966        112 RDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLTFTNSVVCRQAFGKKY  191 (502)
T ss_pred             ceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHHHHHHHhCCcc
Confidence             22 44569999999998 7789999999999999999999999999753  3567999999999999999999999987


Q ss_pred             ccch-hhHHHHHHHHH---HHHhcccccccccccccccc-CC-chhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCccc
Q 012962          155 LEGE-NIFNMLTKLTF---FISKNEYRVRIPVIGKLVKT-HD-DIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGND  228 (452)
Q Consensus       155 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  228 (452)
                      +..+ +.......+..   ..........+|.+ .+++. .. ........+...+++.+.++++.+.....   ....+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~  267 (502)
T PLN02966        192 NEDGEEMKRFIKILYGTQSVLGKIFFSDFFPYC-GFLDDLSGLTAYMKECFERQDTYIQEVVNETLDPKRVK---PETES  267 (502)
T ss_pred             CccchHHHHHHHHHHHHHHHhCcccHHHhhchh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhccccc---ccccc
Confidence            6422 22222222211   11111122334432 11111 11 11223344456666666666554321111   13468


Q ss_pred             HHHHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC---CCCChhhh
Q 012962          229 LLGVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ---QSPNADNI  305 (452)
Q Consensus       229 ~~~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~---~~~~~~~~  305 (452)
                      +++.+++..++...+..++++++.+++..+++||+|||+++++|++++|++||++|+|+++||+++++.   ..++.+++
T Consensus       268 ~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~dl  347 (502)
T PLN02966        268 MIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDV  347 (502)
T ss_pred             HHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccCCCcCCHhhc
Confidence            999999765432112458999999999999999999999999999999999999999999999999873   35799999


Q ss_pred             ccchhHHHHHHhhhcCCCCcccc-cceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCccccc
Q 012962          306 SRLKIMSMIINESLRLYPPVVLI-LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATN  384 (452)
Q Consensus       306 ~~l~~l~a~i~E~lRl~~~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~  384 (452)
                      ++||||+|||+|+||++|++|+. +|.+.+|++++||.|||||.|+++++++||||++||+||++|+||||++++.... 
T Consensus       348 ~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~-  426 (502)
T PLN02966        348 KNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFK-  426 (502)
T ss_pred             cCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcC-
Confidence            99999999999999999999985 8999999999999999999999999999999999989999999999996533211 


Q ss_pred             CCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCcccc-----CceeeeeecCCCceEEEEe
Q 012962          385 NNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHS-----PASIITLRPQHGLQVLLHA  451 (452)
Q Consensus       385 ~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~-----~~~~~~~~p~~~~~v~~~~  451 (452)
                      .....++|||.|+|+|+|++||++|++++++.|+++|+|++.++.+..     +..+++..+++.+.++.+|
T Consensus       427 ~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (502)
T PLN02966        427 GTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPEK  498 (502)
T ss_pred             CCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEEEEe
Confidence            235679999999999999999999999999999999999988774222     2223444344355555444


No 21 
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=3.6e-69  Score=524.05  Aligned_cols=443  Identities=20%  Similarity=0.322  Sum_probs=332.3

Q ss_pred             cCCCCCccc---cccccCC-CchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhcc-
Q 012962            4 ETMRSPMEL---SHQIYPR-VSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLG-   78 (452)
Q Consensus         4 ~~~~~~~~~---~~~~~~~-~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g-   78 (452)
                      ..+|.++|+   ++.+.++ ++..+.+|+++||++|++++|+.+.|+|+||+++++++.+++..|.+++.......+.| 
T Consensus        32 pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~~~~g~  111 (503)
T PLN02394         32 PPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGK  111 (503)
T ss_pred             CcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchHhHhccC
Confidence            345666775   4455554 57889999999999999999999999999999999999876656665432223333333 


Q ss_pred             --CceecccCchHHHHHhhhc-CCCChHHHhhHHHHHHHHHHHHHHHHhhc---CCCceehHHHHHHhhHHHHHHHHhcC
Q 012962           79 --NGLVTAQGEKWFKQRKLAN-HAFHAETLKSMIPDMIASAEMMLDRWRDN---EGQEIDVYQEFKILTLEAISRTAFGS  152 (452)
Q Consensus        79 --~~l~~~~g~~~~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~---~~~~vdl~~~~~~~~~~~~~~~~fG~  152 (452)
                        .+++..+|+.|+++|+.+. +.|+.+.++.+.+.+.++++.+++.|.+.   .+..+++.+.+..+++|+++.++||.
T Consensus       112 ~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~~~~fG~  191 (503)
T PLN02394        112 GQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMYRMMFDR  191 (503)
T ss_pred             CCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHHHHHhCC
Confidence              3367778999999999996 89999999999999999999999999754   13468999999999999999999999


Q ss_pred             ccccch-hhHHHHHHHHHHHHhc------cccccccccccccccCCchhhhhHHHHHHH-HHHHHHHHHhhhhhcCC-Cc
Q 012962          153 SYLEGE-NIFNMLTKLTFFISKN------EYRVRIPVIGKLVKTHDDIESDKTEEDIRD-SIIKIIKKRESNVMTGE-VE  223 (452)
Q Consensus       153 ~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-~~  223 (452)
                      +++..+ .....+..........      .....+|++...+.. ..+........... +....++++++..+..+ ..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  270 (503)
T PLN02394        192 RFESEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPFLRG-YLKICQDVKERRLALFKDYFVDERKKLMSAKGMDK  270 (503)
T ss_pred             CcccccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence            886422 1122111111111000      011223333111110 01111111111122 22334555543322110 11


Q ss_pred             CCcccHHHHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCCCh
Q 012962          224 SDGNDLLGVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ-QSPNA  302 (452)
Q Consensus       224 ~~~~~~~~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~-~~~~~  302 (452)
                      ....|+++.|++...++    .++++++..++..+++||+|||+++++|++++|++||++|+|||+||+++.+. ..++.
T Consensus       271 ~~~~d~l~~ll~~~~~~----~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~  346 (503)
T PLN02394        271 EGLKCAIDHILEAQKKG----EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGNQVTE  346 (503)
T ss_pred             chhhhHHHHHHhccccC----CCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCH
Confidence            13478999999875442    58999999999999999999999999999999999999999999999999984 56789


Q ss_pred             hhhccchhHHHHHHhhhcCCCCcccc-cceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcc
Q 012962          303 DNISRLKIMSMIINESLRLYPPVVLI-LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVAN  381 (452)
Q Consensus       303 ~~~~~l~~l~a~i~E~lRl~~~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~  381 (452)
                      +++++||||+|||+|+||++|++|.. +|.+.+|++++||.|||||.|.++.+++||||++| +||++|+||||++++..
T Consensus       347 ~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~-~~P~~F~PeRwl~~~~~  425 (503)
T PLN02394        347 PDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELW-KNPEEFRPERFLEEEAK  425 (503)
T ss_pred             hHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccC-CCccccCccccCCCCCc
Confidence            99999999999999999999999987 79999999999999999999999999999999999 99999999999965332


Q ss_pred             c-ccCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCcc-cc--Cce-eeeeecCCCceEEEEeC
Q 012962          382 A-TNNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYV-HS--PAS-IITLRPQHGLQVLLHAL  452 (452)
Q Consensus       382 ~-~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~-~~--~~~-~~~~~p~~~~~v~~~~~  452 (452)
                      . .+.....++|||.|+|.|+|++||++|++++++.|+++|++++.+|.+ ..  ... .++...+..++|++++|
T Consensus       426 ~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  501 (503)
T PLN02394        426 VEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPR  501 (503)
T ss_pred             ccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCCcCccccccCceeeccCCCceEEeecC
Confidence            1 112345799999999999999999999999999999999999877642 22  222 34554555999999987


No 22 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=8.9e-69  Score=517.25  Aligned_cols=427  Identities=26%  Similarity=0.427  Sum_probs=339.5

Q ss_pred             cCCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhccCceecccCchHHHHHhhh
Q 012962           17 YPRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLGNGLVTAQGEKWFKQRKLA   96 (452)
Q Consensus        17 ~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g~~l~~~~g~~~~~~R~~~   96 (452)
                      .+.++..+.+|+++||++|++++|+.+.++++||+++++++.+.+..|.++........++|.++++.+|+.|+++|+++
T Consensus        35 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~~~~~~i~~~~g~~wk~~Rk~l  114 (489)
T PLN02936         35 GGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEFLFGSGFAIAEGELWTARRRAV  114 (489)
T ss_pred             ccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHHHhcCccccCCchHHHHHHHhh
Confidence            46788999999999999999999999999999999999999876567777654343444567888889999999999999


Q ss_pred             cCCCChHHHhhHHH-HHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcCccccc---hhhHHHHHHHHHH
Q 012962           97 NHAFHAETLKSMIP-DMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGSSYLEG---ENIFNMLTKLTFF  170 (452)
Q Consensus        97 ~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~---~~~~~~~~~~~~~  170 (452)
                      .+.|+.+.+..+.+ .+.++++.+++.+.+.  ++.++|+.+.+..+++++++.++||.+++..   .++.+.+......
T Consensus       115 ~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~  194 (489)
T PLN02936        115 VPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSVFNYNFDSLTTDSPVIQAVYTALKE  194 (489)
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHcCCCccccccCcHHHHHHHHHHHH
Confidence            99999888887654 7888899999998764  3568999999999999999999999998632   2223323222211


Q ss_pred             HHhccccccccccc----cccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC--------cCCcccHHHHHHHhcc
Q 012962          171 ISKNEYRVRIPVIG----KLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEV--------ESDGNDLLGVLMQAYH  238 (452)
Q Consensus       171 ~~~~~~~~~~P~l~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~ll~~~~  238 (452)
                      ... .....+|.+.    .++ .+..++..+..+.+.+++.+.++++++.......        .....++++.|++.. 
T Consensus       195 ~~~-~~~~~~p~~~~~~l~~~-~p~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~-  271 (489)
T PLN02936        195 AET-RSTDLLPYWKVDFLCKI-SPRQIKAEKAVTVIRETVEDLVDKCKEIVEAEGEVIEGEEYVNDSDPSVLRFLLASR-  271 (489)
T ss_pred             HHH-hhhccchHHhhHHHhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCchHHHHHHHhcc-
Confidence            111 1112233221    111 1123455666777888888888776643321110        013467999998653 


Q ss_pred             CCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCCChhhhccchhHHHHHHhh
Q 012962          239 NVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQQSPNADNISRLKIMSMIINES  318 (452)
Q Consensus       239 ~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~l~~l~a~i~E~  318 (452)
                           ..++.+++.++++.+++||+|||+++++|++++|++||++|++||+||++++++..++++++++||||+|||+||
T Consensus       272 -----~~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~lpyl~avi~Et  346 (489)
T PLN02936        272 -----EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQGRPPTYEDIKELKYLTRCINES  346 (489)
T ss_pred             -----ccCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHHHhhCHHHHHHHHHh
Confidence                 247899999999999999999999999999999999999999999999999987778999999999999999999


Q ss_pred             hcCCCCcccc-cceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCccc-ccCCCccccccCCC
Q 012962          319 LRLYPPVVLI-LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANA-TNNNMAAFIPFGLG  396 (452)
Q Consensus       319 lRl~~~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~-~~~~~~~~~~Fg~G  396 (452)
                      ||++|+++.+ +|.+.+|+.++||.||||+.|+++.+++||||++| +||++|+||||+.++... .......++|||.|
T Consensus       347 lRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G  425 (489)
T PLN02936        347 MRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVW-ERAEEFVPERFDLDGPVPNETNTDFRYIPFSGG  425 (489)
T ss_pred             hhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhC-CCccccCccccCCCCCCccccCCCcceeCCCCC
Confidence            9999999887 45556677789999999999999999999999999 899999999999653211 11223579999999


Q ss_pred             CCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEeC
Q 012962          397 PRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       397 ~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      +|.|+|++||+++++++++.|+++|+++++++.+......+++.|+++++|++++|
T Consensus       426 ~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R  481 (489)
T PLN02936        426 PRKCVGDQFALLEAIVALAVLLQRLDLELVPDQDIVMTTGATIHTTNGLYMTVSRR  481 (489)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCccceecceEEeeCCCeEEEEEee
Confidence            99999999999999999999999999999876543333446778999999999987


No 23 
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=6.1e-69  Score=514.63  Aligned_cols=409  Identities=21%  Similarity=0.275  Sum_probs=330.7

Q ss_pred             CCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhccC-ceecccCchHHHHHhhh
Q 012962           18 PRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLGN-GLVTAQGEKWFKQRKLA   96 (452)
Q Consensus        18 ~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g~-~l~~~~g~~~~~~R~~~   96 (452)
                      .+++.++.+|+++||++|++++|+.++++++||++++++|.+++..|.... ...+..++|. +++..+|+.|+++|+++
T Consensus        31 ~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~-~~~~~~l~g~~~~~~~~g~~wr~~r~~~  109 (452)
T PLN03141         31 SRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAY-PKSLTELMGKSSILLINGSLQRRVHGLI  109 (452)
T ss_pred             CChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccC-chhHHHHhCcccccccCcHHHHHHHHHH
Confidence            468899999999999999999999999999999999999998776665332 1234455664 68888999999999999


Q ss_pred             cCCCChHHHhh-HHHHHHHHHHHHHHHHhhcCCCceehHHHHHHhhHHHHHHHHhcCccccc-hhhHHHHHHHHHHHHhc
Q 012962           97 NHAFHAETLKS-MIPDMIASAEMMLDRWRDNEGQEIDVYQEFKILTLEAISRTAFGSSYLEG-ENIFNMLTKLTFFISKN  174 (452)
Q Consensus        97 ~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~  174 (452)
                      .+.|+...+.. +.+.+.+.+..+++.|..  +..+|+.+.+..+++++++.++||.+...+ +.+...+..+...+.  
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vi~~~~~G~~~~~~~~~~~~~~~~~~~~~~--  185 (452)
T PLN03141        110 GAFLKSPHLKAQITRDMERYVSESLDSWRD--DPPVLVQDETKKIAFEVLVKALISLEPGEEMEFLKKEFQEFIKGLM--  185 (452)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHHhccC--CCCEEhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhhhHH--
Confidence            99998777765 467777777777777653  567999999999999999999999875421 122222222211111  


Q ss_pred             cccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC-c-CCcccHHHHHHHhccCCccccCCCHHHHH
Q 012962          175 EYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEV-E-SDGNDLLGVLMQAYHNVDETLKISLDDLI  252 (452)
Q Consensus       175 ~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~ls~~~i~  252 (452)
                          .+|.   +++.....+..++.+.+.+++.+++++++.....+.. . ....|+++.+++...     ..+++++++
T Consensus       186 ----~~~~---~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~-----~~l~~~~i~  253 (452)
T PLN03141        186 ----SLPI---KLPGTRLYRSLQAKKRMVKLVKKIIEEKRRAMKNKEEDETGIPKDVVDVLLRDGS-----DELTDDLIS  253 (452)
T ss_pred             ----hCcc---CCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCChhhHHHHHHhcCC-----CCCCHHHHH
Confidence                1221   1222222344566788899999999888765432210 0 024689999987642     358999999


Q ss_pred             HHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhC-----CCCCChhhhccchhHHHHHHhhhcCCCCccc
Q 012962          253 DECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFG-----QQSPNADNISRLKIMSMIINESLRLYPPVVL  327 (452)
Q Consensus       253 ~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~-----~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~  327 (452)
                      +++..+++||+|||+++++|++++|++||++|+++++||+++.+     +..++.+++.+||||+|||+|++|++|+++.
T Consensus       254 ~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~  333 (452)
T PLN03141        254 DNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQNVITETLRMGNIING  333 (452)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCC
Confidence            99999999999999999999999999999999999999998863     3457899999999999999999999999988


Q ss_pred             ccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCCccccccCCCCCCccchHHHH
Q 012962          328 ILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNMAAFIPFGLGPRTCVGFNYAI  407 (452)
Q Consensus       328 ~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~  407 (452)
                      ++|.+.+|++++||.||||+.|+++.+++||||++| +||++|+||||++++     ..+..++|||.|+|.|+|++||.
T Consensus       334 ~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~-~dP~~F~PeRfl~~~-----~~~~~~~pFG~G~R~C~G~~lA~  407 (452)
T PLN03141        334 VMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENY-DNPYQFNPWRWQEKD-----MNNSSFTPFGGGQRLCPGLDLAR  407 (452)
T ss_pred             cceeecCCeeECCEEECCCCEEEEehHhccCCchhc-CCccccCcccccCCC-----CCCCCCCCCCCCCCCCChHHHHH
Confidence            899999999999999999999999999999999999 999999999999652     23557999999999999999999


Q ss_pred             HHHHHHHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEeC
Q 012962          408 MEAKIALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       408 ~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      +|++++++.|+++|+|++.++...   ...+++|+++++|++++|
T Consensus       408 ~el~~~la~ll~~f~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  449 (452)
T PLN03141        408 LEASIFLHHLVTRFRWVAEEDTIV---NFPTVRMKRKLPIWVTRI  449 (452)
T ss_pred             HHHHHHHHHHHhcCeeecCCCCee---ecccccCCCCceEEEEeC
Confidence            999999999999999998776322   235889999999999987


No 24 
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=4.1e-69  Score=516.54  Aligned_cols=413  Identities=23%  Similarity=0.360  Sum_probs=338.3

Q ss_pred             CCCccc---ccc-ccCCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhcc-Cce
Q 012962            7 RSPMEL---SHQ-IYPRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLG-NGL   81 (452)
Q Consensus         7 ~~~~~~---~~~-~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g-~~l   81 (452)
                      |.++|+   .+. +.++++.++.+++++||++|++++++.++|+++||+++++++.+++..+ ++.........+| .++
T Consensus        40 p~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~-~~~~~~~~~~~~g~~~l  118 (463)
T PLN02196         40 TMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLF-KPTFPASKERMLGKQAI  118 (463)
T ss_pred             CCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcc-cccCchHHHHHcCcccc
Confidence            445775   233 3568999999999999999999999999999999999999998776555 3322222333456 478


Q ss_pred             ecccCchHHHHHhhhcCCCChHHHhhHHHHHHHHHHHHHHHHhhcCCCceehHHHHHHhhHHHHHHHHhcCccccc-hhh
Q 012962           82 VTAQGEKWFKQRKLANHAFHAETLKSMIPDMIASAEMMLDRWRDNEGQEIDVYQEFKILTLEAISRTAFGSSYLEG-ENI  160 (452)
Q Consensus        82 ~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~-~~~  160 (452)
                      ++.+|+.|+++|+++.+.|++++++.+.+.+.+++.++++.|.   +..+|+.+++..+++++++.++||.+.... +.+
T Consensus       119 ~~~~g~~w~~~Rk~l~~~f~~~~l~~~~~~i~~~~~~~~~~~~---~~~v~~~~~~~~~~~~v~~~~~fG~~~~~~~~~~  195 (463)
T PLN02196        119 FFHQGDYHAKLRKLVLRAFMPDAIRNMVPDIESIAQESLNSWE---GTQINTYQEMKTYTFNVALLSIFGKDEVLYREDL  195 (463)
T ss_pred             cccCcHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHcCC---CCeEEeHHHHHHHHHHHHHHHHcCCCCchHHHHH
Confidence            8889999999999999999999999999999999999999885   357999999999999999999999875321 121


Q ss_pred             HHHHHHHHHHHHhccccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHHHHHHHhccCC
Q 012962          161 FNMLTKLTFFISKNEYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLLGVLMQAYHNV  240 (452)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  240 (452)
                      .+    ....+...  ...+|+   .++....++..++.+.+.+++.+.++++++..   .   ...|+++.+++.    
T Consensus       196 ~~----~~~~~~~~--~~~~~~---~~p~~~~~~~~~a~~~~~~~~~~~i~~~~~~~---~---~~~d~l~~ll~~----  256 (463)
T PLN02196        196 KR----CYYILEKG--YNSMPI---NLPGTLFHKSMKARKELAQILAKILSKRRQNG---S---SHNDLLGSFMGD----  256 (463)
T ss_pred             HH----HHHHHhcc--hhcccc---cCCCccchHHHHHHHHHHHHHHHHHHHHhhcC---C---CcccHHHHHHhc----
Confidence            11    11111111  111232   22322234566777888888888888775431   1   457899988853    


Q ss_pred             ccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC----CCCChhhhccchhHHHHHH
Q 012962          241 DETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ----QSPNADNISRLKIMSMIIN  316 (452)
Q Consensus       241 ~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~----~~~~~~~~~~l~~l~a~i~  316 (452)
                        +.+++++++.++++.+++||+|||+++++|++++|++||++|+|+++|++++.+.    ..++.+++.++|||+|||+
T Consensus       257 --~~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~  334 (463)
T PLN02196        257 --KEGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQ  334 (463)
T ss_pred             --CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHH
Confidence              1358999999999999999999999999999999999999999999999999862    4578999999999999999


Q ss_pred             hhhcCCCCcccccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCCccccccCCC
Q 012962          317 ESLRLYPPVVLILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNMAAFIPFGLG  396 (452)
Q Consensus       317 E~lRl~~~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G  396 (452)
                      |+||++|+++...|.+.+|++++||.|||||.|+++.+++||||++| +||++|+||||+++      .....++|||.|
T Consensus       335 EtlRl~p~~~~~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~-~dP~~F~PeRfl~~------~~~~~~lpFG~G  407 (463)
T PLN02196        335 ETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIF-SDPGKFDPSRFEVA------PKPNTFMPFGNG  407 (463)
T ss_pred             HHHhcCCCccccceeeccccccCCEEeCCCCEEEeeHHHhcCCchhc-CCcCccChhhhcCC------CCCCcccCcCCC
Confidence            99999999999889999999999999999999999999999999999 99999999999963      245679999999


Q ss_pred             CCCccchHHHHHHHHHHHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEeC
Q 012962          397 PRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       397 ~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      +|.|+|+++|+.|++++++.|+++|+|++.++.. ......+..|+++++|+++++
T Consensus       408 ~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~  462 (463)
T PLN02196        408 THSCPGNELAKLEISVLIHHLTTKYRWSIVGTSN-GIQYGPFALPQNGLPIALSRK  462 (463)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCC-ceEEcccccCCCCceEEEecC
Confidence            9999999999999999999999999999887643 233444678999999999874


No 25 
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=3.5e-69  Score=517.45  Aligned_cols=418  Identities=19%  Similarity=0.258  Sum_probs=335.4

Q ss_pred             CCCccc---cccccCCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhcc-Ccee
Q 012962            7 RSPMEL---SHQIYPRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLG-NGLV   82 (452)
Q Consensus         7 ~~~~~~---~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g-~~l~   82 (452)
                      |.++|+   .+.+.+++..++++++++||++|++++|+.++++|+||+++++++.++...|.+... .....++| .+++
T Consensus        36 p~~~P~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~-~~~~~~lg~~~~~  114 (463)
T PLN02774         36 TMGWPLFGETTEFLKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYP-QSMLDILGTCNIA  114 (463)
T ss_pred             CCCCCchhhHHHHHHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCC-HHHHHHhCccchh
Confidence            444664   445667788899999999999999999999999999999999999876655533322 22224455 4677


Q ss_pred             cccCchHHHHHhhhcCCCChHHHhh-HHHHHHHHHHHHHHHHhhcCCCceehHHHHHHhhHHHHHHHHhcCccccchhhH
Q 012962           83 TAQGEKWFKQRKLANHAFHAETLKS-MIPDMIASAEMMLDRWRDNEGQEIDVYQEFKILTLEAISRTAFGSSYLEGENIF  161 (452)
Q Consensus        83 ~~~g~~~~~~R~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~  161 (452)
                      +.+|+.|+.+|+++.+.|+...++. +.+.+.+.++++++.|..  ++++|+.+.+..+++++++.++||.+.....  .
T Consensus       115 ~~~g~~w~~~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~--~  190 (463)
T PLN02774        115 AVHGSTHRYMRGSLLSLISPTMIRDHLLPKIDEFMRSHLSGWDG--LKTIDIQEKTKEMALLSALKQIAGTLSKPIS--E  190 (463)
T ss_pred             hcCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhCC--CCCEEeeHHHHHHHHHHHHHHHcCCCChHHH--H
Confidence            7899999999999999999988875 789999999999988864  4579999999999999999999998653211  1


Q ss_pred             HHHHHHHHHHHhccccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHHHHHHHhccCCc
Q 012962          162 NMLTKLTFFISKNEYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLLGVLMQAYHNVD  241 (452)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  241 (452)
                      +....+......   ...+|   .++|....++..++.+.+.+++.+.++++++..   .   ...|+++.+++...+  
T Consensus       191 ~~~~~~~~~~~~---~~~~~---~~lp~~~~~~~~~~~~~~~~~~~~~i~~r~~~~---~---~~~d~l~~ll~~~~~--  256 (463)
T PLN02774        191 EFKTEFFKLVLG---TLSLP---IDLPGTNYRSGVQARKNIVRMLRQLIQERRASG---E---THTDMLGYLMRKEGN--  256 (463)
T ss_pred             HHHHHHHHHhcc---cccCC---cCCCChhhhHHHHHHHHHHHHHHHHHHHHHhcC---C---CcccHHHHHHhCccC--
Confidence            111111111111   11122   122322234556677888888888888876431   1   457999999874322  


Q ss_pred             cccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC----CCCChhhhccchhHHHHHHh
Q 012962          242 ETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ----QSPNADNISRLKIMSMIINE  317 (452)
Q Consensus       242 ~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~----~~~~~~~~~~l~~l~a~i~E  317 (452)
                       +..++++++.+++..+++||+|||+++++|++++|++||++|+|+++||+++++.    ..++++++++||||+|||+|
T Consensus       257 -~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE  335 (463)
T PLN02774        257 -RYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFE  335 (463)
T ss_pred             -CCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHH
Confidence             2358999999999999999999999999999999999999999999999999862    45789999999999999999


Q ss_pred             hhcCCCCcccccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCCccccccCCCC
Q 012962          318 SLRLYPPVVLILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNMAAFIPFGLGP  397 (452)
Q Consensus       318 ~lRl~~~~~~~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~  397 (452)
                      +||++|+++.++|.+.+|++++||.||||+.|+++.+++||||++| +||++|+||||++++..    ....++|||+|+
T Consensus       336 ~lRl~P~v~~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~-~dP~~F~PeRfl~~~~~----~~~~~lpFG~G~  410 (463)
T PLN02774        336 TSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLY-PDPMTFNPWRWLDKSLE----SHNYFFLFGGGT  410 (463)
T ss_pred             HHhcCCCCCCcccccCCCeeECCEEECCCCEEEEehHHhcCCcccC-CChhccCchhcCCCCcC----CCccccCcCCCC
Confidence            9999999998899999999999999999999999999999999999 99999999999965321    123599999999


Q ss_pred             CCccchHHHHHHHHHHHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEe
Q 012962          398 RTCVGFNYAIMEAKIALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHA  451 (452)
Q Consensus       398 ~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~  451 (452)
                      |.|||+++|.+|++++++.|+++|+|++.++....  ...+..|++|++|+++.
T Consensus       411 r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~~~--~~~~~~p~~g~~~~~~~  462 (463)
T PLN02774        411 RLCPGKELGIVEISTFLHYFVTRYRWEEVGGDKLM--KFPRVEAPNGLHIRVSP  462 (463)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHHhceEEECCCCccc--cCCCCCCCCCceEEeee
Confidence            99999999999999999999999999998764322  22355689999999874


No 26 
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=2.7e-67  Score=505.96  Aligned_cols=422  Identities=19%  Similarity=0.298  Sum_probs=333.3

Q ss_pred             ccccCCCchHHHHHHHHhC-CeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCch-hhhhhhhccCceecccCchHHH
Q 012962           14 HQIYPRVSPHVYSWIKLYG-KNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREP-REYTKKLLGNGLVTAQGEKWFK   91 (452)
Q Consensus        14 ~~~~~~~~~~~~~~~~~yG-~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~-~~~~~~~~g~~l~~~~g~~~~~   91 (452)
                      +....+...++..+.++++ .+++++..+.  ++++||+.+++++..+...|.++.. ...+..++|.|+++.+|+.|++
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g~gi~~~~g~~wk~  133 (502)
T PLN02426         56 AKDFDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLGRGIFNVDGDSWRF  133 (502)
T ss_pred             HHhcccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcCCceeecCcHHHHH
Confidence            3334556777777888887 4677766554  8999999999999876667877653 3445567789999999999999


Q ss_pred             HHhhhcCCCChHHHhhHH--HHHHHHHHHHHHHHhhc----CCCceehHHHHHHhhHHHHHHHHhcCccccc------hh
Q 012962           92 QRKLANHAFHAETLKSMI--PDMIASAEMMLDRWRDN----EGQEIDVYQEFKILTLEAISRTAFGSSYLEG------EN  159 (452)
Q Consensus        92 ~R~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~----~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~------~~  159 (452)
                      +||++++.|+.++++.+.  +.+.+.++.+++.+.+.    .+.++|+.+++..+++|+++.++||.+++..      .+
T Consensus       134 ~Rk~l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~l~~~~~~~~  213 (502)
T PLN02426        134 QRKMASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLDPGCLELSLPISE  213 (502)
T ss_pred             HHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCCCcccCCCCCccH
Confidence            999999999998888764  66777777888777643    1357999999999999999999999987532      12


Q ss_pred             hHHHHHHHHHHHHhcccccccccc---ccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHHHHHHHh
Q 012962          160 IFNMLTKLTFFISKNEYRVRIPVI---GKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLLGVLMQA  236 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~P~l---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ll~~  236 (452)
                      +.+.+.......... ....+|++   ..+++.+..++..+..+.+.+++.++++++++...   .  ...|+++.+++.
T Consensus       214 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~---~--~~~dll~~ll~~  287 (502)
T PLN02426        214 FADAFDTASKLSAER-AMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLGF---S--ASKDLLSRFMAS  287 (502)
T ss_pred             HHHHHHHHHHHHHHH-HhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhccc---C--CcchHHHHHHhc
Confidence            333332222111110 11112322   12233333455677788889999999988765421   1  357999999975


Q ss_pred             ccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC--CCCChhhhccchhHHHH
Q 012962          237 YHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ--QSPNADNISRLKIMSMI  314 (452)
Q Consensus       237 ~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~--~~~~~~~~~~l~~l~a~  314 (452)
                      .        .+++++.+++..+++||+|||+++++|++++|++||++|+||++||+++++.  ..++.+++++||||+||
T Consensus       288 ~--------~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~~~l~~LpYl~av  359 (502)
T PLN02426        288 I--------NDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASFEEMKEMHYLHAA  359 (502)
T ss_pred             C--------CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCHHHHhcChHHHHH
Confidence            3        2578999999999999999999999999999999999999999999999874  35899999999999999


Q ss_pred             HHhhhcCCCCcccccceeccceec-CcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCCcccccc
Q 012962          315 INESLRLYPPVVLILRKVKKEVKL-GKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNMAAFIPF  393 (452)
Q Consensus       315 i~E~lRl~~~~~~~~R~~~~d~~l-~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~~~~~~F  393 (452)
                      |+|+||++|++|...|.+.+|.++ +||.|||||.|.++.+++||||++||+||++|+||||++++.... .....++||
T Consensus       360 i~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~-~~~~~~~pF  438 (502)
T PLN02426        360 LYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVP-ENPFKYPVF  438 (502)
T ss_pred             HHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCC-CCCcccCCC
Confidence            999999999999888999999887 999999999999999999999999999999999999997421111 234579999


Q ss_pred             CCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCcc--ccCceeeeeecCCCceEEEEeC
Q 012962          394 GLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTYV--HSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       394 g~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~--~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      |+|+|.|+|+++|++|++++++.|+++|++++.++..  .......+++|+++++|++++|
T Consensus       439 g~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r  499 (502)
T PLN02426        439 QAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRER  499 (502)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCCCCCcccceeEEecCCCEEEEEEEc
Confidence            9999999999999999999999999999999865422  1233457899999999999987


No 27 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=8.2e-67  Score=505.23  Aligned_cols=444  Identities=15%  Similarity=0.214  Sum_probs=327.2

Q ss_pred             CCCCccc---cccccC-CCc-hHHHHHHHHh-CCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhcc-
Q 012962            6 MRSPMEL---SHQIYP-RVS-PHVYSWIKLY-GKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLG-   78 (452)
Q Consensus         6 ~~~~~~~---~~~~~~-~~~-~~~~~~~~~y-G~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g-   78 (452)
                      +|.++|+   ++.+.. ++. .++.++.++| |++|++++|+.++|+|+||++++++|.+++..|..++.......+.+ 
T Consensus        44 gp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~~~l~~~  123 (534)
T PLN03018         44 GPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIMETIGDN  123 (534)
T ss_pred             CCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhhhhhccC
Confidence            4555775   445432 333 4577777777 79999999999999999999999999987767877653333322211 


Q ss_pred             -Cceeccc-CchHHHHHhhhcCCCChHH-HhhHHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcCc
Q 012962           79 -NGLVTAQ-GEKWFKQRKLANHAFHAET-LKSMIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGSS  153 (452)
Q Consensus        79 -~~l~~~~-g~~~~~~R~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~~  153 (452)
                       .++++.. |+.|+++|+++++.|.... ...+.+....++..+++.+.+.  .+.++|+.+.+..+++++++.++||.+
T Consensus       124 ~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~  203 (534)
T PLN03018        124 YKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMRMLFGRR  203 (534)
T ss_pred             CCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHHHHhCCc
Confidence             2466664 9999999999999875443 4445556666788888888752  345799999999999999999999998


Q ss_pred             ccc-------chhhHHHHHHHHH----HHHhc---ccccccc-cccccccc-CCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 012962          154 YLE-------GENIFNMLTKLTF----FISKN---EYRVRIP-VIGKLVKT-HDDIESDKTEEDIRDSIIKIIKKRESNV  217 (452)
Q Consensus       154 ~~~-------~~~~~~~~~~~~~----~~~~~---~~~~~~P-~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~  217 (452)
                      +..       +............    .....   .....+| ++ ...+. ....+.....+.+.+++.++++++++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  282 (534)
T PLN03018        204 HVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWL-RGWNIDGQEERAKVNVNLVRSYNNPIIDERVELW  282 (534)
T ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhh-hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            642       1111111111111    11110   0011122 22 11110 1112233345567788888888776542


Q ss_pred             hcCCCcCCcccHHHHHHHhccCCccccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC
Q 012962          218 MTGEVESDGNDLLGVLMQAYHNVDETLKISLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ  297 (452)
Q Consensus       218 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~  297 (452)
                      ..........|+++.|++...+. +...++++++++++..+++||+|||+++++|++++|++||++|+|+++||+++++.
T Consensus       283 ~~~~~~~~~~d~l~~ll~~~~~~-~~~~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~  361 (534)
T PLN03018        283 REKGGKAAVEDWLDTFITLKDQN-GKYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGK  361 (534)
T ss_pred             hhccCCCCcccHHHHHHHhhccc-CCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCC
Confidence            21111012468999999765432 11148999999999999999999999999999999999999999999999999984


Q ss_pred             -CCCChhhhccchhHHHHHHhhhcCCCCcccc-cceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCC
Q 012962          298 -QSPNADNISRLKIMSMIINESLRLYPPVVLI-LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERF  375 (452)
Q Consensus       298 -~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~-~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rf  375 (452)
                       +.++.+++.+||||+|||+|+||++|++|.+ +|.+.+|++++||.||||+.|+++.+++||||++| +||++|+||||
T Consensus       362 ~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~-~~p~~F~PeRf  440 (534)
T PLN03018        362 DRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIW-KDPLVYEPERH  440 (534)
T ss_pred             CCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccC-CCccccCCccC
Confidence             5689999999999999999999999999987 79999999999999999999999999999999999 99999999999


Q ss_pred             CCCCcccc----cCCCccccccCCCCCCccchHHHHHHHHHHHHHHHhhcEEEeCCCc-cccC-ceeeeeecCCCceEEE
Q 012962          376 AGGVANAT----NNNMAAFIPFGLGPRTCVGFNYAIMEAKIALSMILQQYKFTLSPTY-VHSP-ASIITLRPQHGLQVLL  449 (452)
Q Consensus       376 l~~~~~~~----~~~~~~~~~Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~-~~~~-~~~~~~~p~~~~~v~~  449 (452)
                      +++++...    ......++|||.|+|.|+|++||..|+++++++|+++|++++.++. +... ...+++..+++++|++
T Consensus       441 l~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~  520 (534)
T PLN03018        441 LQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFGPLSLEEDDASLLMAKPLLLSV  520 (534)
T ss_pred             CCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCCCCCccccccceecCCCeEEEE
Confidence            96533211    0134579999999999999999999999999999999999987763 2111 1223344456999999


Q ss_pred             EeC
Q 012962          450 HAL  452 (452)
Q Consensus       450 ~~~  452 (452)
                      ++|
T Consensus       521 ~~R  523 (534)
T PLN03018        521 EPR  523 (534)
T ss_pred             Eec
Confidence            987


No 28 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=1.9e-66  Score=496.26  Aligned_cols=408  Identities=19%  Similarity=0.279  Sum_probs=325.4

Q ss_pred             CCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhcc-CceecccCchHHHHHhhh
Q 012962           18 PRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLG-NGLVTAQGEKWFKQRKLA   96 (452)
Q Consensus        18 ~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g-~~l~~~~g~~~~~~R~~~   96 (452)
                      .+++.++.+++++||++|++++++.++++|+||+++++++.++...|.++.. .....++| .|+++.+|+.|+++|+++
T Consensus        54 ~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~-~~~~~~lg~~~l~~~~g~~wr~~R~~~  132 (472)
T PLN02987         54 ENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYP-GSISNLLGKHSLLLMKGNLHKKMHSLT  132 (472)
T ss_pred             CChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCc-HHHHHHhCcccccccCcHHHHHHHHHH
Confidence            4588889999999999999999999999999999999999987766755432 23335556 578888999999999998


Q ss_pred             cCCCChHHHhhHH-HHHHHHHHHHHHHHhhcCCCceehHHHHHHhhHHHHHHHHhcCccccc-hhhHHHHHHHHHHHHhc
Q 012962           97 NHAFHAETLKSMI-PDMIASAEMMLDRWRDNEGQEIDVYQEFKILTLEAISRTAFGSSYLEG-ENIFNMLTKLTFFISKN  174 (452)
Q Consensus        97 ~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~  174 (452)
                      .+.++.+.+..+. ..+.+.+...++.|.    .++++.+.+..+++++++.++||.+.+.. +.+.+.+.....   . 
T Consensus       133 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~t~~vi~~~~fg~~~~~~~~~~~~~~~~~~~---~-  204 (472)
T PLN02987        133 MSFANSSIIKDHLLLDIDRLIRFNLDSWS----SRVLLMEEAKKITFELTVKQLMSFDPGEWTESLRKEYVLVIE---G-  204 (472)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHhhc----cceehHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh---h-
Confidence            7644444444432 223444444455552    36899999999999999999999876432 222222221111   1 


Q ss_pred             cccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHHHHHHHhccCCccccCCCHHHHHHH
Q 012962          175 EYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLLGVLMQAYHNVDETLKISLDDLIDE  254 (452)
Q Consensus       175 ~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ls~~~i~~~  254 (452)
                      .....+|++     ....++..+..+.+.+++.+.++++++....+..  ...|+++.+++..      .+++++++.++
T Consensus       205 ~~~~~~p~l-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~--~~~d~l~~ll~~~------~~~~~~ei~~~  271 (472)
T PLN02987        205 FFSVPLPLF-----STTYRRAIQARTKVAEALTLVVMKRRKEEEEGAE--KKKDMLAALLASD------DGFSDEEIVDF  271 (472)
T ss_pred             hhcCCCcCC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--ccccHHHHHHhcC------CCCCHHHHHHH
Confidence            112223432     1224566778888999999999988765433211  4579999999752      25899999999


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhC----CCCCChhhhccchhHHHHHHhhhcCCCCcccccc
Q 012962          255 CKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFG----QQSPNADNISRLKIMSMIINESLRLYPPVVLILR  330 (452)
Q Consensus       255 ~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~----~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~R  330 (452)
                      +..+++||+|||+.+++|++++|++||++|+++++|++++.+    ...++.+++.+||||+||++|+||++|+++.++|
T Consensus       272 ~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~~~R  351 (472)
T PLN02987        272 LVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGGIFR  351 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCCccc
Confidence            999999999999999999999999999999999999999875    2457899999999999999999999999998899


Q ss_pred             eeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCCccccccCCCCCCccchHHHHHHH
Q 012962          331 KVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNMAAFIPFGLGPRTCVGFNYAIMEA  410 (452)
Q Consensus       331 ~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~  410 (452)
                      .+.+|++++||.||||+.|+++.+++||||++| +||++|+||||+++....  .....++|||.|+|.|+|++||..|+
T Consensus       352 ~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~F~PeRfl~~~~~~--~~~~~~l~FG~G~r~C~G~~lA~~e~  428 (472)
T PLN02987        352 RAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYF-KDARTFNPWRWQSNSGTT--VPSNVFTPFGGGPRLCPGYELARVAL  428 (472)
T ss_pred             cCCCCeeECCEEECCCCEEEEehHHhhCCcccC-CCccccCcccCCCCCCCC--CCCcceECCCCCCcCCCcHHHHHHHH
Confidence            999999999999999999999999999999999 999999999999653221  23457999999999999999999999


Q ss_pred             HHHHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEeC
Q 012962          411 KIALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       411 ~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      +++++.|+++|++++.++.+...  ..+++|.+++++++++|
T Consensus       429 ~~~la~ll~~f~~~~~~~~~~~~--~~~~~p~~~~~~~~~~r  468 (472)
T PLN02987        429 SVFLHRLVTRFSWVPAEQDKLVF--FPTTRTQKRYPINVKRR  468 (472)
T ss_pred             HHHHHHHHhceEEEECCCCceee--cccccCCCCceEEEEec
Confidence            99999999999999987754322  35889999999999987


No 29 
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=5.6e-66  Score=501.44  Aligned_cols=412  Identities=22%  Similarity=0.362  Sum_probs=329.7

Q ss_pred             CCCchHHHHHHHHhCC--eeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCchhhhhhhhccC-ceecccCchHHHHHh
Q 012962           18 PRVSPHVYSWIKLYGK--NFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKREPREYTKKLLGN-GLVTAQGEKWFKQRK   94 (452)
Q Consensus        18 ~~~~~~~~~~~~~yG~--v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~~~~~~~~~~g~-~l~~~~g~~~~~~R~   94 (452)
                      +++++++.+++++||+  +|++++++.+.|+++||+++++++.++ ..|.+....... ..+|. ++...+|+.|+++|+
T Consensus        66 ~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~~~~~~-~~~g~~~~~~~~g~~w~~~R~  143 (490)
T PLN02302         66 SNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGWPESTV-ELIGRKSFVGITGEEHKRLRR  143 (490)
T ss_pred             CCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCCchhHH-HHhccccccccCcHHHHHHHH
Confidence            4688899999999997  689999999999999999999999865 355443221222 24553 455678999999999


Q ss_pred             hhcCCCC-hHHHhhHHHHHHHHHHHHHHHHhhcCCCceehHHHHHHhhHHHHHHHHhcCccccch-hhHHHHHHHHHHHH
Q 012962           95 LANHAFH-AETLKSMIPDMIASAEMMLDRWRDNEGQEIDVYQEFKILTLEAISRTAFGSSYLEGE-NIFNMLTKLTFFIS  172 (452)
Q Consensus        95 ~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~-~~~~~~~~~~~~~~  172 (452)
                      ++.+.|+ .+.++.+.+.+.+.+.++++.+..  +..+|+.+.+..+++++++.++||.+..... .+..........+.
T Consensus       144 ~~~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~--~~~v~~~~~~~~~~~~vi~~~~~G~~~~~~~~~~~~~~~~~~~~~~  221 (490)
T PLN02302        144 LTAAPVNGPEALSTYIPYIEENVKSCLEKWSK--MGEIEFLTELRKLTFKIIMYIFLSSESELVMEALEREYTTLNYGVR  221 (490)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHHHHHHhcC--CCCEehHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhh
Confidence            9999995 678899999999999999999875  3469999999999999999999998764321 11111111111110


Q ss_pred             hccccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHHHHHHHhccCCccccCCCHHHHH
Q 012962          173 KNEYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLLGVLMQAYHNVDETLKISLDDLI  252 (452)
Q Consensus       173 ~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ls~~~i~  252 (452)
                            .++   ..++.....+..+..+.+.+++.+.++++++....+.. ....|+++.+++...++  +..++++++.
T Consensus       222 ------~~~---~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~d~l~~ll~~~~~~--~~~~~~~~i~  289 (490)
T PLN02302        222 ------AMA---INLPGFAYHRALKARKKLVALFQSIVDERRNSRKQNIS-PRKKDMLDLLLDAEDEN--GRKLDDEEII  289 (490)
T ss_pred             ------hCC---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCcCCHHHHHHhhhccC--CCCCCHHHHH
Confidence                  001   01122122344556677888888888887655332211 14579999999875432  2358999999


Q ss_pred             HHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC-----CCChhhhccchhHHHHHHhhhcCCCCccc
Q 012962          253 DECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQQ-----SPNADNISRLKIMSMIINESLRLYPPVVL  327 (452)
Q Consensus       253 ~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~~-----~~~~~~~~~l~~l~a~i~E~lRl~~~~~~  327 (452)
                      ++++.+++||+|||+++++|++++|++||++|+||++|++++++..     .++++++++||||+|+|+|+||++|+++.
T Consensus       290 ~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~  369 (490)
T PLN02302        290 DLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLT  369 (490)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHHHhCCCccc
Confidence            9999999999999999999999999999999999999999998632     27899999999999999999999999998


Q ss_pred             ccceeccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCCccccccCCCCCCccchHHHH
Q 012962          328 ILRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNMAAFIPFGLGPRTCVGFNYAI  407 (452)
Q Consensus       328 ~~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~  407 (452)
                      .+|.+.+|++++||.||||+.|+++.+++||||++| +||++|+||||++..     .....++|||.|+|.|+|++||.
T Consensus       370 ~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~PeR~~~~~-----~~~~~~~pFG~G~r~C~G~~lA~  443 (490)
T PLN02302        370 VFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVY-PNPKEFDPSRWDNYT-----PKAGTFLPFGLGSRLCPGNDLAK  443 (490)
T ss_pred             chhcccCCEeECCEEECCCCEEEeeHHHhcCCcccC-CCccccChhhcCCCC-----CCCCCccCCCCCCcCCCcHHHHH
Confidence            889999999999999999999999999999999999 999999999999642     23457999999999999999999


Q ss_pred             HHHHHHHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEeC
Q 012962          408 MEAKIALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       408 ~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      .|++++++.|+++|++++.++.. ......+..|++++.++++||
T Consensus       444 ~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~  487 (490)
T PLN02302        444 LEISIFLHHFLLGYRLERLNPGC-KVMYLPHPRPKDNCLARITKV  487 (490)
T ss_pred             HHHHHHHHHHHhcCeeEEcCCCC-cceeCCCCCCCCCceEEEEec
Confidence            99999999999999999875421 112234589999999999886


No 30 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=2.2e-66  Score=456.35  Aligned_cols=425  Identities=20%  Similarity=0.319  Sum_probs=353.5

Q ss_pred             cccccCCCchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhCCCCCCCCc-hhhhhhhhccCceecc-cCchHH
Q 012962           13 SHQIYPRVSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDKHRAYPKRE-PREYTKKLLGNGLVTA-QGEKWF   90 (452)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~~~~~~~~~-~~~~~~~~~g~~l~~~-~g~~~~   90 (452)
                      ...|.++|.++++++++|||+||++.++|+.+.++.+|+....+++.....++... ........||+|+... .+....
T Consensus        46 a~~fgk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~vFg~~v~~d~~~~~~~  125 (486)
T KOG0684|consen   46 ALAFGKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPVFGKGVVYDVPNHVMM  125 (486)
T ss_pred             HHHhccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhhcCCCccccCCCchHH
Confidence            77889999999999999999999999999999999999999999988655666555 3366777889886643 577788


Q ss_pred             HHHhhhcCCCChHHHhhHHHHHHHHHHHHHHH-HhhcCCCceehHHHHHHhhHHHHHHHHhcCcccc-chhhHHHHHHHH
Q 012962           91 KQRKLANHAFHAETLKSMIPDMIASAEMMLDR-WRDNEGQEIDVYQEFKILTLEAISRTAFGSSYLE-GENIFNMLTKLT  168 (452)
Q Consensus        91 ~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~-~~~~~~~~~~~~  168 (452)
                      ++.+++..++...+++++.+.+.+++.+.+.. |.+ +|..-.+......+++.+.-..++|..... +++....+.++.
T Consensus       126 e~~~~~k~~L~~~~lk~~~e~m~~el~~~f~~~~~~-s~~~d~l~~~~~~ii~tAs~~ll~~e~r~~~d~~~a~l~~dLd  204 (486)
T KOG0684|consen  126 EQKKFFKSALGGVALKSLVELMLEELHAYFETSLGE-SGETDGLYTFCRLIIFTASRLLLGGEVRDQLDADVAKLYHDLD  204 (486)
T ss_pred             HHHHHHHHHhchhhHHHHHHHHHHHHHHHHhccccc-ccchhHhhhhhHHHhhhhHHHhhhhhhhhhhcchHHHHHHHHh
Confidence            89999999999999999999999999999988 554 466777788888888888777777765543 233233333332


Q ss_pred             HHHHhccccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHHHHHHHhccCCccccCCCH
Q 012962          169 FFISKNEYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLLGVLMQAYHNVDETLKISL  248 (452)
Q Consensus       169 ~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ls~  248 (452)
                      ..+.  .....||.   .+|....++..++.+.+.+++...+.++++..+.     ...|++..+++.+.+.   ...++
T Consensus       205 ~~F~--~~d~~FP~---~LP~~~~r~~~ra~~~i~k~f~~~i~~rr~s~s~-----~~~dmlq~l~~~y~dg---~~~te  271 (486)
T KOG0684|consen  205 QGFQ--PFDFLFPY---NLPIPLLRRRDRARKKISKIFSKIILDRRASISK-----WDNDMLQSLMEKYKDG---RPTTE  271 (486)
T ss_pred             cccc--chHhhccc---CCCcchhhhHHHHHHHHHHHHHHHHHHHHhcccc-----ccHHHHHHHHHHhhcC---CcCcH
Confidence            2221  13345562   4566667778899999999999999999876432     5678999999844433   57899


Q ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC--CCCChhhhccchhHHHHHHhhhcCCCCcc
Q 012962          249 DDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQ--QSPNADNISRLKIMSMIINESLRLYPPVV  326 (452)
Q Consensus       249 ~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~--~~~~~~~~~~l~~l~a~i~E~lRl~~~~~  326 (452)
                      +|++...+.+++||+.||+.|.+|++++|++|||+++++++|+.+++|+  ...+.++++++|+|++||+|||||+||.+
T Consensus       272 ~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~  351 (486)
T KOG0684|consen  272 EEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPPAH  351 (486)
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCchh
Confidence            9999999999999999999999999999999999999999999999994  44899999999999999999999999999


Q ss_pred             cccceeccceecCc----EEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccc-cCC--CccccccCCCCCC
Q 012962          327 LILRKVKKEVKLGK----FVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANAT-NNN--MAAFIPFGLGPRT  399 (452)
Q Consensus       327 ~~~R~~~~d~~l~g----~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~-~~~--~~~~~~Fg~G~~~  399 (452)
                      .+.|.+.+|.++.+    |.||+|..|.++...+|+||++| +||++|+|+||++++.+.+ +..  ...+||||+|+|.
T Consensus       352 ~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif-~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~  430 (486)
T KOG0684|consen  352 SLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIF-PDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHR  430 (486)
T ss_pred             hHHHhhccceeeccCCcceecCCCCEEEeccccccCCcccc-CChhhCChhhccCCCcccccccccccccccccCCCcCC
Confidence            88999999999965    99999999999999999999999 9999999999998766542 112  2346999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHhhcEEEeCCCc-cccCceeeeeecCCCceEEEEeC
Q 012962          400 CVGFNYAIMEAKIALSMILQQYKFTLSPTY-VHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       400 C~G~~la~~~~~~~l~~ll~~f~~~~~~~~-~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      |||+.||.+|+|+++..+|+.||+++.+|. +..-....++.|.++++|+.|+|
T Consensus       431 CpGr~FA~~eIk~~~~l~L~~fdleLid~~~P~~d~s~~v~~P~g~v~irYK~R  484 (486)
T KOG0684|consen  431 CPGRSFAYLEIKQFISLLLRHFDLELIDGPFPEVDYSRMVMQPEGDVRIRYKRR  484 (486)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcceeecCCCCCCCCHHHhhcCCCCCceEEEeec
Confidence            999999999999999999999999999863 22222345889999999999987


No 31 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=4.3e-57  Score=423.79  Aligned_cols=380  Identities=27%  Similarity=0.397  Sum_probs=314.0

Q ss_pred             CchHHHHHHHHhCCeeEEecCCee--EEEeCCHHHHHHHHhhCCCCCCCCc----hhhhhhhhccCc-eecccCchHHHH
Q 012962           20 VSPHVYSWIKLYGKNFLMWYGLEA--QLVVTEPQLIKEILSDKHRAYPKRE----PREYTKKLLGNG-LVTAQGEKWFKQ   92 (452)
Q Consensus        20 ~~~~~~~~~~~yG~v~~~~~g~~~--~vvv~dp~~~~~vl~~~~~~~~~~~----~~~~~~~~~g~~-l~~~~g~~~~~~   92 (452)
                      +......+.+.||.++..+..+.-  ++++++++.+++++.++. .+.+..    ........+|.+ +++.+|+.|.++
T Consensus        24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~  102 (411)
T COG2124          24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRL  102 (411)
T ss_pred             hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHH
Confidence            456677788889988877765543  799999999999998753 122221    111134556655 888999999999


Q ss_pred             HhhhcCCCChHHHhhHHHHHHHHHHHHHHHHhhcCCCceehHHHHHHhhHHHHHHHHhcCccccchhhHHHHHHHHHHHH
Q 012962           93 RKLANHAFHAETLKSMIPDMIASAEMMLDRWRDNEGQEIDVYQEFKILTLEAISRTAFGSSYLEGENIFNMLTKLTFFIS  172 (452)
Q Consensus        93 R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~  172 (452)
                      |++++++|+++.++.+.+.+.+.++++++.+ ..+ ...++.+.+..+++++++ .+||.+..+...+..........  
T Consensus       103 Rkl~~~~F~~~~~~~~~~~i~~~~~~~~~~~-~~~-~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~~~~~~~~~~~~~~--  177 (411)
T COG2124         103 RKLLAPAFTPRALRGYRPLIREIADRLLDDL-WQG-GADLVLDFAAELTLRVIA-ELLGVPLEDRPQLLRWSDALLLR--  177 (411)
T ss_pred             HHHhccccCHHHHHHHHHHHHHHHHHHHHhc-ccC-CchhHHHHhhhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHhc--
Confidence            9999999999999999999999999999999 433 688899999999999999 99999988665544443332221  


Q ss_pred             hccccccccccccccccCCchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcccHHHHHHHhccCCccccCCCHHHHH
Q 012962          173 KNEYRVRIPVIGKLVKTHDDIESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGNDLLGVLMQAYHNVDETLKISLDDLI  252 (452)
Q Consensus       173 ~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ls~~~i~  252 (452)
                            ..|.   ..+........++...+.+++.++|++++..        ..+|+++.|+.+.+++  +..+|++||.
T Consensus       178 ------~~~~---~~~~~~~~~~~~a~~~~~~~~~~li~~rR~~--------~~~dlls~l~~a~~~~--~~~lsd~Ei~  238 (411)
T COG2124         178 ------LDPD---LGPEEPWRRARAARRELDAYLRALIAERRAA--------PRDDLLSLLLSAEDDG--GGRLSDDEIR  238 (411)
T ss_pred             ------cCcc---cCCcccHHHHHHHHHHHHHHHHHHHHHhccC--------CcccHHHHHHHHhhCC--CCcCCHHHHH
Confidence                  0021   1222235667788899999999999999833        7899999999987765  1259999999


Q ss_pred             HHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCCChhhhccchhHHHHHHhhhcCCCCccccccee
Q 012962          253 DECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLFGQQSPNADNISRLKIMSMIINESLRLYPPVVLILRKV  332 (452)
Q Consensus       253 ~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl~~~~~~~~R~~  332 (452)
                      ++++.+++||+|||+++++|+++.|++||++++++++|.+.               ||++++|+|+||++|+++...|.+
T Consensus       239 ~~~~~ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~---------------~~~~~~v~E~LR~~ppv~~~~R~~  303 (411)
T COG2124         239 DELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEPDR---------------PLLEAVVEETLRLYPPVPLARRVA  303 (411)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch---------------HHHHHHHHHHHHhCCchhccceec
Confidence            99999999999999999999999999999999999999553               789999999999999999988999


Q ss_pred             ccceecCcEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCCcccccCCCccccccCCCCCCccchHHHHHHHHH
Q 012962          333 KKEVKLGKFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGVANATNNNMAAFIPFGLGPRTCVGFNYAIMEAKI  412 (452)
Q Consensus       333 ~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~~~~~~~~~~~~~~Fg~G~~~C~G~~la~~~~~~  412 (452)
                      .+|++++|+.||||+.|+++++++||||++| +||++|+|+||.           ..++|||+|+|.|+|.+||++|+++
T Consensus       304 ~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f-~~P~~F~p~R~~-----------~~~l~FG~G~H~ClG~~lA~~E~~~  371 (411)
T COG2124         304 TEDVELGGYRIPAGTVVLLSIGAANRDPEVF-PDPDEFDPERFN-----------NAHLPFGGGPHRCLGAALARLELKV  371 (411)
T ss_pred             cCCEeeCCEEeCCCCEEEecHhhhcCChhhC-CChhhcCCCCCC-----------CCCcCCCCCCccccCHHHHHHHHHH
Confidence            9999999999999999999999999999999 999999999996           3599999999999999999999999


Q ss_pred             HHHHHHhhcEEEeCCCccccCceeeeeecCCCceEEEEeC
Q 012962          413 ALSMILQQYKFTLSPTYVHSPASIITLRPQHGLQVLLHAL  452 (452)
Q Consensus       413 ~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~  452 (452)
                      +++.++++|++....+ ........+..|..+..+.++.+
T Consensus       372 ~l~~ll~r~~~~~~~~-~~~~~~~~~~~~~g~~~l~v~~~  410 (411)
T COG2124         372 ALAELLRRFPLLLLAE-PPPLVRRPTLVPRGGERLPVRRR  410 (411)
T ss_pred             HHHHHHHhCchhhcCC-CCCccccccccCCCcceeeeecC
Confidence            9999999999876665 22233445677777777777653


No 32 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=1e-56  Score=425.95  Aligned_cols=378  Identities=12%  Similarity=0.185  Sum_probs=281.5

Q ss_pred             cCCCchHHHHHHHHhCC-eeEEecCCeeE-------EEeCCHHHHHHHHhh----CCCCCCCCchhhhhhhhcc-C---c
Q 012962           17 YPRVSPHVYSWIKLYGK-NFLMWYGLEAQ-------LVVTEPQLIKEILSD----KHRAYPKREPREYTKKLLG-N---G   80 (452)
Q Consensus        17 ~~~~~~~~~~~~~~yG~-v~~~~~g~~~~-------vvv~dp~~~~~vl~~----~~~~~~~~~~~~~~~~~~g-~---~   80 (452)
                      ..+|..++.+.++|||+ ||++.++|.|+       |+++||++++.+|.+    ++..+.. .+..... ++| .   +
T Consensus        40 ~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~~~~~~~-~~~~~~~-l~G~~~~~s  117 (480)
T PLN02648         40 FQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDKRDVFTG-TYMPSTA-FTGGYRVLS  117 (480)
T ss_pred             hcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhcccccccee-eeccCcc-ccCCceeee
Confidence            34568999999999998 99999998666       999999999999974    3323333 2223333 777 3   6


Q ss_pred             eecccCchHHHHHhhhcCCCChHHHhhHHHHHHHHHHHHHHHHhhc--CCCceehHHHHHHhhHHHHHHHHhcCccccch
Q 012962           81 LVTAQGEKWFKQRKLANHAFHAETLKSMIPDMIASAEMMLDRWRDN--EGQEIDVYQEFKILTLEAISRTAFGSSYLEGE  158 (452)
Q Consensus        81 l~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~vdl~~~~~~~~~~~~~~~~fG~~~~~~~  158 (452)
                      ++..+|+.|+++|+++.+.|+ ..++.+.+.+.+.+.++++.|...  .+.++|+.+.+..+++++++.++||.+.+. +
T Consensus       118 ~~~~~g~~H~r~Rrll~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~~~vdv~~~~~~lt~~vi~~~lfG~~~~~-~  195 (480)
T PLN02648        118 YLDPSEPKHAKLKSFLFELLK-SRHRRFIPEFRAAFAELFDTWEAELAKKGKAEFNDPLDQMAFNFLCKALTGKDPSE-T  195 (480)
T ss_pred             ecCCCCchHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHcCCCcch-h
Confidence            677789999999999999998 577889999999999999999642  245799999999999999999999997654 2


Q ss_pred             hhHHHHHHHHHHHHhcccccccccccccccc----------CCc-hhhhhHHHHHHHHHHHHHHHHhhhhhcCCCcCCcc
Q 012962          159 NIFNMLTKLTFFISKNEYRVRIPVIGKLVKT----------HDD-IESDKTEEDIRDSIIKIIKKRESNVMTGEVESDGN  227 (452)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~----------~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  227 (452)
                      .+.+.+..+......   ...+|.....++.          ... .......+.+.+++.                    
T Consensus       196 ~l~~~~~~~~~~~~~---~~~~p~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------------  252 (480)
T PLN02648        196 ALGSDGPALIQKWLA---LQLAPLASTGLPHVLEELLLHTFPLPFFLVKSDYDKLYDFFR--------------------  252 (480)
T ss_pred             hhccchhHHHHHHHH---HHhhHHHHcCchHHHHHHhhcccCCchhhhhccHHHHHHHHH--------------------
Confidence            122211111111000   0011111000000          000 000001111111111                    


Q ss_pred             cHHHHHHHhccCCccccCCCHHHHHHHHHH-HHHhcchhhHHHHHHHHHHHhcCch-HHHHHHHHHHHHhC--CCCCChh
Q 012962          228 DLLGVLMQAYHNVDETLKISLDDLIDECKT-FYIAGHETTASLLTWTVLLLAIHND-WQDKARNEVLQLFG--QQSPNAD  303 (452)
Q Consensus       228 ~~~~~ll~~~~~~~~~~~ls~~~i~~~~~~-~~~ag~~tt~~~~~~~l~~l~~~p~-~~~~lr~Ei~~~~~--~~~~~~~  303 (452)
                      +.++.+++...+.    +++++++.++++. +.+++++|++++++|++++|++||+ +|++|++||+++++  +..++.+
T Consensus       253 ~~~~~ll~~~~~~----~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~~~~~~~~~~t~~  328 (480)
T PLN02648        253 ASATEALDLAEKF----GISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLAEEVRSAVKAGGGGVTFA  328 (480)
T ss_pred             HHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCCHH
Confidence            1122333332222    5999999999875 4466788888899999999999995 99999999999986  3568999


Q ss_pred             hhccchhHHHHHHhhhcCCCCcccccceeccceecC----cEEecCCCeEEEeccccccCCCCcCCCCCCCCCCCCCCCC
Q 012962          304 NISRLKIMSMIINESLRLYPPVVLILRKVKKEVKLG----KFVIPADVDITIPTLAVHHDPQIWGEEFHLFKPERFAGGV  379 (452)
Q Consensus       304 ~~~~l~~l~a~i~E~lRl~~~~~~~~R~~~~d~~l~----g~~ip~G~~v~~~~~~~~~d~~~~~~~p~~F~P~Rfl~~~  379 (452)
                      ++++||||++||+|+||++|+++...|++.+|++++    ||.||||+.|+++.+.+||||++| +||++|+|+||++++
T Consensus       329 ~l~~l~yl~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~-~dP~~F~PeRf~~~~  407 (480)
T PLN02648        329 ALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVF-DRPEEFVPDRFMGEE  407 (480)
T ss_pred             HHhcCHHHHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccC-CCcceeCCCCCCCCC
Confidence            999999999999999999999999989999999995    899999999999999999999999 999999999998653


Q ss_pred             cccccCCCccccc---------cCCCCCCccchHHHHHHHHHHHHHHHhhcE-EEeCCCcc
Q 012962          380 ANATNNNMAAFIP---------FGLGPRTCVGFNYAIMEAKIALSMILQQYK-FTLSPTYV  430 (452)
Q Consensus       380 ~~~~~~~~~~~~~---------Fg~G~~~C~G~~la~~~~~~~l~~ll~~f~-~~~~~~~~  430 (452)
                      ...    ...+++         ||+|+|.|+|++||+.|+++++++|+++|+ |++.+|..
T Consensus       408 ~~~----~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~~  464 (480)
T PLN02648        408 GEK----LLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDTS  464 (480)
T ss_pred             ccc----cccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCcc
Confidence            211    123333         467789999999999999999999999998 99988754


No 33 
>PF12554 MOZART1:  Mitotic-spindle organizing gamma-tubulin ring associated;  InterPro: IPR022214  This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important. 
Probab=68.06  E-value=17  Score=22.31  Aligned_cols=43  Identities=9%  Similarity=0.088  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHH
Q 012962          249 DDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEV  291 (452)
Q Consensus       249 ~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei  291 (452)
                      -+++..+..++-.|.|..+-.++--|.+.--||+..+.+-.|+
T Consensus         5 ~d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el   47 (48)
T PF12554_consen    5 LDVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL   47 (48)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            4677778888888999888888888888889999888887775


No 34 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=49.63  E-value=15  Score=30.72  Aligned_cols=44  Identities=7%  Similarity=0.215  Sum_probs=32.8

Q ss_pred             cchhHHHHHHhhhcCCCCcccccceeccceecCcEEecCCCeEEE
Q 012962          307 RLKIMSMIINESLRLYPPVVLILRKVKKEVKLGKFVIPADVDITI  351 (452)
Q Consensus       307 ~l~~l~a~i~E~lRl~~~~~~~~R~~~~d~~l~g~~ip~G~~v~~  351 (452)
                      .-..+.|||.|+.-.... ..+-=+..+|+.++|..|||||.+..
T Consensus        51 ~~n~I~A~V~~~qtv~~G-s~vrlRLle~i~i~g~~IPkgt~l~G   94 (200)
T PF12508_consen   51 EKNTIRAVVDGTQTVVDG-SRVRLRLLEDIQIGGILIPKGTYLYG   94 (200)
T ss_pred             CCCeEEEEEecceEEeCC-CEEEEEEcCceEECCEEeCCCCEEEE
Confidence            355678999999877643 23323457889999999999998876


No 35 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=43.85  E-value=20  Score=22.89  Aligned_cols=19  Identities=16%  Similarity=0.073  Sum_probs=16.2

Q ss_pred             HHHHHHhcCchHHHHHHHH
Q 012962          272 WTVLLLAIHNDWQDKARNE  290 (452)
Q Consensus       272 ~~l~~l~~~p~~~~~lr~E  290 (452)
                      -++.+|.+||++.++|.+.
T Consensus         4 ~iV~YLv~nPevl~kl~~g   22 (57)
T PF05952_consen    4 EIVNYLVQNPEVLEKLKEG   22 (57)
T ss_pred             HHHHHHHHChHHHHHHHcC
Confidence            4577999999999999874


No 36 
>PF13625 Helicase_C_3:  Helicase conserved C-terminal domain
Probab=41.02  E-value=48  Score=25.49  Aligned_cols=39  Identities=31%  Similarity=0.592  Sum_probs=29.4

Q ss_pred             CchHHHHHHHHhCCeeEEecCCeeEEEeCCHHHHHHHHhhC
Q 012962           20 VSPHVYSWIKLYGKNFLMWYGLEAQLVVTEPQLIKEILSDK   60 (452)
Q Consensus        20 ~~~~~~~~~~~yG~v~~~~~g~~~~vvv~dp~~~~~vl~~~   60 (452)
                      .-..+.+|.++||.+-.  ..+...+...|++.++++.+.+
T Consensus        76 v~~~i~~w~~~~g~v~l--~~~~~~l~~~d~~~l~~l~~~~  114 (129)
T PF13625_consen   76 VEQSIEDWARRYGRVRL--YKGAYLLECDDPELLDELLADP  114 (129)
T ss_pred             HHHHHHHHHHhcCCEEE--ecCeEEEEECCHHHHHHHHhCh
Confidence            34569999999998632  2235578899999999998764


No 37 
>PF09201 SRX:  SRX;  InterPro: IPR015284  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel.  This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=40.20  E-value=26  Score=26.92  Aligned_cols=23  Identities=13%  Similarity=0.375  Sum_probs=16.8

Q ss_pred             CccchHHHHHHHHHHHHHHHhhc
Q 012962          399 TCVGFNYAIMEAKIALSMILQQY  421 (452)
Q Consensus       399 ~C~G~~la~~~~~~~l~~ll~~f  421 (452)
                      .|.|+.||+.++-.++.+|+...
T Consensus        19 N~~gKKFsE~QiN~FIs~lItsP   41 (148)
T PF09201_consen   19 NCLGKKFSETQINAFISHLITSP   41 (148)
T ss_dssp             ETTS----HHHHHHHHHHHHHS-
T ss_pred             cccchHHHHHHHHHHHHHHhcCC
Confidence            79999999999999999999763


No 38 
>PRK06789 flagellar motor switch protein; Validated
Probab=39.96  E-value=38  Score=23.11  Aligned_cols=39  Identities=15%  Similarity=0.107  Sum_probs=29.9

Q ss_pred             HHhhhcCCCCccc-ccceeccc--eecCcEEecCCCeEEEec
Q 012962          315 INESLRLYPPVVL-ILRKVKKE--VKLGKFVIPADVDITIPT  353 (452)
Q Consensus       315 i~E~lRl~~~~~~-~~R~~~~d--~~l~g~~ip~G~~v~~~~  353 (452)
                      ++|.+.+.+..-. +-|.+.+.  +.++|..|.+|..|.++-
T Consensus        22 i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~~   63 (74)
T PRK06789         22 IEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNG   63 (74)
T ss_pred             HHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEECC
Confidence            7888999876544 35767655  555999999999998864


No 39 
>PF11138 DUF2911:  Protein of unknown function (DUF2911);  InterPro: IPR021314  This bacterial family of proteins has no known function. 
Probab=39.41  E-value=45  Score=26.27  Aligned_cols=42  Identities=19%  Similarity=0.371  Sum_probs=30.5

Q ss_pred             eeccceecCcEEecCCCeEEEecc-------ccccCCCCcCCCCCCCCCCC
Q 012962          331 KVKKEVKLGKFVIPADVDITIPTL-------AVHHDPQIWGEEFHLFKPER  374 (452)
Q Consensus       331 ~~~~d~~l~g~~ip~G~~v~~~~~-------~~~~d~~~~~~~p~~F~P~R  374 (452)
                      ...+|+.|+|..||+|+.-+..+.       -++.+...||.  ..++|+.
T Consensus        51 ~f~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~--~~Y~~~~   99 (145)
T PF11138_consen   51 TFSKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA--YNYDPSK   99 (145)
T ss_pred             EECCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc--cccCchh
Confidence            446789999999999998777553       45677778863  4555553


No 40 
>PF02268 TFIIA_gamma_N:  Transcription initiation factor IIA, gamma subunit, helical domain;  InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=36.93  E-value=54  Score=20.27  Aligned_cols=45  Identities=16%  Similarity=0.095  Sum_probs=25.0

Q ss_pred             HHHhcCchHHHHHHHHHHHHhCCCCCChhhhcc-chhHHHHHHhhh
Q 012962          275 LLLAIHNDWQDKARNEVLQLFGQQSPNADNISR-LKIMSMIINESL  319 (452)
Q Consensus       275 ~~l~~~p~~~~~lr~Ei~~~~~~~~~~~~~~~~-l~~l~a~i~E~l  319 (452)
                      |.|.++-.+-..|.+-+++.+.++..+++-..+ +.-.+-+|.|+|
T Consensus         3 yelYR~stlG~aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~~L   48 (49)
T PF02268_consen    3 YELYRRSTLGIALTDTLDELIQEGKITPQLAMKVLEQFDKSINEAL   48 (49)
T ss_dssp             -CGGGCSHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence            445555566666666666666666555554433 444566666665


No 41 
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=34.06  E-value=1.7e+02  Score=20.79  Aligned_cols=65  Identities=17%  Similarity=0.358  Sum_probs=40.5

Q ss_pred             CchHHHHHhhhc---CCCChHHHhhHH----HH-HHHHHHHHHHHHhhcCCCcee---hHHHHHHhhHHHHHHHHh
Q 012962           86 GEKWFKQRKLAN---HAFHAETLKSMI----PD-MIASAEMMLDRWRDNEGQEID---VYQEFKILTLEAISRTAF  150 (452)
Q Consensus        86 g~~~~~~R~~~~---~~~~~~~l~~~~----~~-~~~~~~~~~~~l~~~~~~~vd---l~~~~~~~~~~~~~~~~f  150 (452)
                      |..|++.=|.+.   .+++...++.+.    .. +.+.+.+++..|....+....   +...+...-++.+...++
T Consensus        13 Gr~WK~laR~Lg~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l~   88 (90)
T cd08780          13 GKKWKPVGRSLQKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDLL   88 (90)
T ss_pred             hHHHHHHHHHHcccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHHh
Confidence            889999877776   458887776654    23 677888899999876343333   333334444444444333


No 42 
>PF14550 Peptidase_U35_2:  Putative phage protease XkdF
Probab=31.35  E-value=34  Score=26.00  Aligned_cols=32  Identities=16%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             cceeccceecCcEEecCCCeEEEeccccccCCCCc
Q 012962          329 LRKVKKEVKLGKFVIPADVDITIPTLAVHHDPQIW  363 (452)
Q Consensus       329 ~R~~~~d~~l~g~~ip~G~~v~~~~~~~~~d~~~~  363 (452)
                      .-++.+|.+++|..||+|+.|+.--.   .|+++|
T Consensus        70 S~I~~~d~~~~g~~i~~GtWv~~~k~---~ddelW  101 (122)
T PF14550_consen   70 SYIAPEDMEIGGETIPKGTWVVGVKI---TDDELW  101 (122)
T ss_pred             EEecCCCcccCCeeecceEEEEEEEe---cCHHHH
Confidence            35667799999999999999965332   356777


No 43 
>PF13893 RRM_5:  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=29.27  E-value=1.2e+02  Score=18.88  Aligned_cols=35  Identities=9%  Similarity=-0.010  Sum_probs=25.0

Q ss_pred             HHHHHHHhCCeeEEecC----CeeEEEeCCHHHHHHHHh
Q 012962           24 VYSWIKLYGKNFLMWYG----LEAQLVVTEPQLIKEILS   58 (452)
Q Consensus        24 ~~~~~~~yG~v~~~~~g----~~~~vvv~dp~~~~~vl~   58 (452)
                      +.++.++||+|-.+.+.    +.-+|-..+++.++.+..
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~   39 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE   39 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred             ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence            45677899998777654    334677789999888876


No 44 
>PF11227 DUF3025:  Protein of unknown function (DUF3025);  InterPro: IPR021390  Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function. 
Probab=26.82  E-value=35  Score=28.72  Aligned_cols=21  Identities=24%  Similarity=0.613  Sum_probs=18.3

Q ss_pred             ccccccCCCCcCCCCCCCCCCC
Q 012962          353 TLAVHHDPQIWGEEFHLFKPER  374 (452)
Q Consensus       353 ~~~~~~d~~~~~~~p~~F~P~R  374 (452)
                      .+..+.|+.+| .|...|+|.|
T Consensus       191 W~~~n~~~~FY-~d~~~FRp~R  211 (212)
T PF11227_consen  191 WWPDNEDPAFY-DDTDVFRPGR  211 (212)
T ss_pred             CCCCCCCcccc-cCccccCCCC
Confidence            34559999999 9999999998


No 45 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=26.03  E-value=32  Score=21.56  Aligned_cols=11  Identities=45%  Similarity=0.960  Sum_probs=9.0

Q ss_pred             cccCCCCCCcc
Q 012962          391 IPFGLGPRTCV  401 (452)
Q Consensus       391 ~~Fg~G~~~C~  401 (452)
                      -+||-|.|.|-
T Consensus        12 ~kfg~GsrsC~   22 (56)
T KOG3506|consen   12 RKFGQGSRSCR   22 (56)
T ss_pred             cccCCCCccee
Confidence            35999999884


No 46 
>PF08776 VASP_tetra:  VASP tetramerisation domain;  InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=25.31  E-value=1.1e+02  Score=17.89  Aligned_cols=29  Identities=21%  Similarity=0.322  Sum_probs=18.3

Q ss_pred             chHHHHHHHHHHHHhCCCCCChhhhccchhHHHHHHhhhcC
Q 012962          281 NDWQDKARNEVLQLFGQQSPNADNISRLKIMSMIINESLRL  321 (452)
Q Consensus       281 p~~~~~lr~Ei~~~~~~~~~~~~~~~~l~~l~a~i~E~lRl  321 (452)
                      .++.+.+|.|++.+            +-..++|...|..|.
T Consensus        10 qEIL~EvrkEl~K~------------K~EIIeA~~~eL~r~   38 (40)
T PF08776_consen   10 QEILEEVRKELQKV------------KEEIIEAIRQELSRR   38 (40)
T ss_dssp             HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH------------HHHHHHHHHHHHhcc
Confidence            35666777776665            234577777776553


No 47 
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.97  E-value=1.7e+02  Score=20.38  Aligned_cols=60  Identities=10%  Similarity=0.114  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHHHhCCCCCChhhhcc---chhHHHHHHhhhcCCCCcccc--cceeccceecCcE
Q 012962          282 DWQDKARNEVLQLFGQQSPNADNISR---LKIMSMIINESLRLYPPVVLI--LRKVKKEVKLGKF  341 (452)
Q Consensus       282 ~~~~~lr~Ei~~~~~~~~~~~~~~~~---l~~l~a~i~E~lRl~~~~~~~--~R~~~~d~~l~g~  341 (452)
                      +.+.++.+.+.++-.+...++.++.+   .|---..|--+++-+|....+  -|++..|=.++||
T Consensus         2 ~f~~~V~~~l~~IP~G~v~TYg~iA~~~g~p~~~RaVg~al~~np~~~~iPcHRVv~s~G~l~~y   66 (80)
T TIGR00589         2 PFQQRVWQALRTIPYGETKSYGQLAARIGNPKAVRAVGGANGRNPLAILVPCHRVIGKNGSLTGY   66 (80)
T ss_pred             hHHHHHHHHHhCCCCCCcCCHHHHHHHhCCCChHHHHHHHHHhCCCCCCCCCceeECCCCCCCCC
Confidence            46777888887765567778877765   333445566667777765444  4777778777776


No 48 
>PF08780 NTase_sub_bind:  Nucleotidyltransferase substrate binding protein like;  InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=24.67  E-value=3.2e+02  Score=20.85  Aligned_cols=60  Identities=23%  Similarity=0.485  Sum_probs=37.2

Q ss_pred             HHHHHHhhCCCCCCCCchhhhhhhhccCceecccCchHHHH---HhhhcCCCChHHHhhHHHHHH
Q 012962           52 LIKEILSDKHRAYPKREPREYTKKLLGNGLVTAQGEKWFKQ---RKLANHAFHAETLKSMIPDMI  113 (452)
Q Consensus        52 ~~~~vl~~~~~~~~~~~~~~~~~~~~g~~l~~~~g~~~~~~---R~~~~~~~~~~~l~~~~~~~~  113 (452)
                      +++..|...+.. ........+...+..|++ .|++.|..+   |...+..+.......+...+.
T Consensus        46 ~lK~~L~~~G~~-~~~spr~~~r~A~~~glI-~d~e~Wl~m~~~RN~tsHtYde~~a~~i~~~I~  108 (124)
T PF08780_consen   46 TLKDYLEYEGIS-ECNSPRDVFREAFKAGLI-DDGEIWLDMLEDRNLTSHTYDEETAEEIYERIP  108 (124)
T ss_dssp             HHHHHHHHCTSS-CCTSHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHGGGTTSHHHHHHHHHTHH
T ss_pred             HHHHHHHHhCCc-ccCCHHHHHHHHHHcCCC-CCHHHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            456666665532 222234566666667777 778889864   667788888765555444444


No 49 
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=23.60  E-value=1.9e+02  Score=21.31  Aligned_cols=39  Identities=21%  Similarity=0.154  Sum_probs=31.6

Q ss_pred             chHHHHHHHHhCCeeEEecC------CeeEEEeCCHHHHHHHHhh
Q 012962           21 SPHVYSWIKLYGKNFLMWYG------LEAQLVVTEPQLIKEILSD   59 (452)
Q Consensus        21 ~~~~~~~~~~yG~v~~~~~g------~~~~vvv~dp~~~~~vl~~   59 (452)
                      .+-+.++.-+||.|-.+++|      |..+||-.|-..++..+.+
T Consensus        32 seemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh   76 (124)
T KOG0114|consen   32 SEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH   76 (124)
T ss_pred             HHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence            34588899999999999988      3458888888888888865


No 50 
>PF14129 DUF4296:  Domain of unknown function (DUF4296)
Probab=23.45  E-value=2.7e+02  Score=19.57  Aligned_cols=49  Identities=10%  Similarity=0.119  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Q 012962          247 SLDDLIDECKTFYIAGHETTASLLTWTVLLLAIHNDWQDKARNEVLQLF  295 (452)
Q Consensus       247 s~~~i~~~~~~~~~ag~~tt~~~~~~~l~~l~~~p~~~~~lr~Ei~~~~  295 (452)
                      +.+.........++-=++.++..+.-.+.+-++||+..+++.+.+..-+
T Consensus        30 ~~~~~~~~~~~~I~kKy~Ids~~f~~S~~YY~~~p~~~~~Iy~~V~~rL   78 (87)
T PF14129_consen   30 SSDDNMIAYYQYIFKKYGIDSAQFDSSMVYYSRNPEEYEKIYDKVIERL   78 (87)
T ss_pred             cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            4555666666778888889999999999999999999999998876643


No 51 
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=22.44  E-value=70  Score=30.21  Aligned_cols=45  Identities=11%  Similarity=0.190  Sum_probs=33.5

Q ss_pred             cchhHHHHHHhhhcCCCCcccccceeccceecCcEEecCCCeEEEe
Q 012962          307 RLKIMSMIINESLRLYPPVVLILRKVKKEVKLGKFVIPADVDITIP  352 (452)
Q Consensus       307 ~l~~l~a~i~E~lRl~~~~~~~~R~~~~d~~l~g~~ip~G~~v~~~  352 (452)
                      .-..+.|||.|+.-+... ..+-=+..+|+.++|..|||||.|...
T Consensus       254 ~~n~I~A~V~~~qtv~~G-~~vrlRLle~~~v~~~~ipkgt~l~g~  298 (410)
T TIGR03779       254 ERNTIRACVHETQTVVDG-SAVKLRLLEPIQAGDLVIPKGTVLYGT  298 (410)
T ss_pred             CCCceEEEEcCceEEecC-CEEEEEEcCceeeCCEEecCCCEEEEE
Confidence            456788999998877643 333234578999999999999988753


No 52 
>PF09551 Spore_II_R:  Stage II sporulation protein R (spore_II_R);  InterPro: IPR014202  This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=21.45  E-value=2.7e+02  Score=21.54  Aligned_cols=41  Identities=20%  Similarity=0.129  Sum_probs=23.3

Q ss_pred             cchhHHHHHHhhhcCCCCcccccceeccce-----ecCcEEecCCCe
Q 012962          307 RLKIMSMIINESLRLYPPVVLILRKVKKEV-----KLGKFVIPADVD  348 (452)
Q Consensus       307 ~l~~l~a~i~E~lRl~~~~~~~~R~~~~d~-----~l~g~~ip~G~~  348 (452)
                      +++-++++..++++-....-.+ ++.....     .+|++.+|+|..
T Consensus        53 ~~~~Ie~~A~~~l~~~G~~y~v-~v~~~~~~FPtK~YG~~~~PaG~Y   98 (130)
T PF09551_consen   53 NLPEIEQIAEEVLAEEGYDYPV-KVELGRFYFPTKTYGDIVLPAGEY   98 (130)
T ss_pred             hHHHHHHHHHHHHHHhCCCCcE-EEEEEeeeCCCceECCEeccCCce
Confidence            3556666666666655432222 3332222     448899999964


No 53 
>PF09105 SelB-wing_1:  Elongation factor SelB, winged helix ;  InterPro: IPR015189 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 1".  The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; PDB: 2V9V_A 1LVA_A 2PLY_A.
Probab=21.13  E-value=2.1e+02  Score=17.34  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=14.2

Q ss_pred             CCCHHHHHHHHHHHHHhcchh
Q 012962          245 KISLDDLIDECKTFYIAGHET  265 (452)
Q Consensus       245 ~ls~~~i~~~~~~~~~ag~~t  265 (452)
                      .++.++....+-.+..||.-|
T Consensus        28 slsleetrkllqsmaaagqvt   48 (61)
T PF09105_consen   28 SLSLEETRKLLQSMAAAGQVT   48 (61)
T ss_dssp             T--HHHHHHHHHHHHHTTSEE
T ss_pred             hccHHHHHHHHHHHHhcCceE
Confidence            577788888777777777654


No 54 
>PF15300 INT_SG_DDX_CT_C:  INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=20.97  E-value=69  Score=21.21  Aligned_cols=15  Identities=33%  Similarity=0.521  Sum_probs=12.7

Q ss_pred             chhHHHHHHhhhcCC
Q 012962          308 LKIMSMIINESLRLY  322 (452)
Q Consensus       308 l~~l~a~i~E~lRl~  322 (452)
                      .-+++.+|+|++|+.
T Consensus        40 ~~fv~~~IkEA~RFk   54 (65)
T PF15300_consen   40 KQFVEMIIKEAARFK   54 (65)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            457999999999975


Done!