BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012963
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 202 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
EC +C+E A ++L CNHLFH +C+ WL+Q SCP CRK L
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 62
>pdb|4G3O|A Chain A, Crystal Structure Of The Cue Domain Of The E3 Ubiquitin
Ligase Amfr (Gp78)
Length = 58
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 415 AMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451
AMA ++E+ P +P L+ QDLQ T S IT +N+L+
Sbjct: 19 AMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 55
>pdb|2EJS|A Chain A, Solution Structure Of Ruh-076, A Human Cue Domain
Length = 58
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 415 AMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451
AMA ++E+ P +P L+ QDLQ T S IT +N+L+
Sbjct: 15 AMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 51
>pdb|2LVN|C Chain C, Structure Of The Gp78 Cue Domain
pdb|2LVO|C Chain C, Structure Of The Gp78cue Domain Bound To Monubiquitin
pdb|2LVP|C Chain C, Gp78cue Domain Bound To The Distal Ubiquitin Of K48-Linked
Diubiquitin
pdb|2LVQ|D Chain D, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
Length = 52
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 415 AMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451
AMA ++E+ P +P L+ QDLQ T S IT +N+L+
Sbjct: 7 AMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 43
>pdb|2EKF|A Chain A, Solution Structure Of Ruh-075, A Human Cue Domain
Length = 61
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 416 MAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451
+A+ V+EVLPH+P +I +DL +T +T+ NLL+
Sbjct: 16 LAQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLE 51
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 202 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
+C IC E +A L C H F C+ W+ + + CP CRK +
Sbjct: 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI----ECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 202 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
+C IC E +A L C H F C+ W+ + + CP CRK +
Sbjct: 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI----ECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 202 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
+C IC E +A L C H F C+ W+ + + CP CRK +
Sbjct: 66 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI----ECPICRKDI 108
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACL-----RSWLDQGLNEMYSCPTCR 245
C IC E + + L C H F ACL +S LD+G + SCP CR
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGES---SCPVCR 66
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 203 CAICREPMAKAKKLLC---NHLFHLACLRSWLDQGLNEMYSCPTCR 245
C +CR+ K +LC N FHL CLR L + + + CP C+
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 201 DECAICRE-PMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANS 259
+ C IC E P + L C H F C+ W+ Q +CP C+ P+ IE++S
Sbjct: 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP----TCPLCKVPVESVVHTIESDS 61
Query: 260 RPGE 263
G+
Sbjct: 62 EFGD 65
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 35.8 bits (81), Expect = 0.050, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 190 DATSEELRAYDDECAICREPMAKAKKLLCNHLFHL---ACLRSWLDQGLNEMYSCPTCRK 246
D S E A C IC E + A+ LC H L +C+R WL + + CP CR
Sbjct: 12 DEQSVESIAEVFRCFICXEKLRDAR--LCPHCSKLCCFSCIRRWLTE---QRAQCPHCRA 66
Query: 247 PL 248
PL
Sbjct: 67 PL 68
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 35.8 bits (81), Expect = 0.053, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 187 ALPDA-TSEELRAYDDE--CAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYS 240
ALP+ +E+ A E C IC K A +L C+H FH C+ WL + +
Sbjct: 24 ALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS----GT 79
Query: 241 CPTCR 245
CP CR
Sbjct: 80 CPVCR 84
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 202 ECAICR---EPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
+C IC E ++L C HLFH C+ WL CP CR
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICR 58
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 202 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRP 261
EC IC E + + C+H+F C+ L+Q CP C+ + +R ++ ++R
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPS-QCPLCKND--ITKRSLQESTRF 79
Query: 262 GEVSSDEQL-----ARQLSMGLDRQNN 283
++ E+L A QL GL+ N+
Sbjct: 80 SQLV--EELLKIICAFQLDTGLEYANS 104
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
C IC E K C HL +CL SW + +E CP CR
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQE---SEGQGCPFCR 69
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
C IC E K C HL +CL SW + +E CP CR
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQE---SEGQGCPFCR 66
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 203 CAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 247
C IC E + ++ L C HL H C L +G Y CP C P
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 199 YDDECAICREPMAKAKKLL----CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249
++D C++CR K+ +LL C+ ++HL CL L M+ CP C+ +
Sbjct: 4 HEDFCSVCR----KSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 198 AYDDECAICREPMAKAKKLL----CNHLFHLACLRSWLDQGLNEMYSCPTCR 245
++D C++CR K+ +LL C+ ++HL CL L M+ CP C+
Sbjct: 7 GHEDFCSVCR----KSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
C IC E K C HL +CL SW + +E CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQE---SEGQGCPFCR 376
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 20/73 (27%)
Query: 193 SEELR-AYDDECAICRE------------------PMAKAKKLLCNHLFHLACLRSWLDQ 233
+EEL+ A +++C IC E PM + C+H FHL CL +
Sbjct: 17 TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76
Query: 234 GLNE-MYSCPTCR 245
G + CP+C+
Sbjct: 77 GNKDGSLQCPSCK 89
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
C IC E K C HL +CL SW + +E CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQE---SEGQGCPFCR 376
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 203 CAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249
CA+C E +L C H FH CL WL+ CP C P+
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVL 63
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
C IC E K C HL +CL SW + +E CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQE---SEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
C IC E K C HL +CL SW + +E CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQE---SEGQGCPFCR 374
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 203 CAICR---EPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
C +C E + L CNH FH C+ WL +CP CR
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN----RTCPICR 67
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 33.1 bits (74), Expect = 0.31, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 200 DDECAICREPMAKAKKLLC----NHLFHLACLRSWLDQGLNEMYSCPTC 244
+DECA+CR+ +L+C FHLACL L + + + C +C
Sbjct: 5 EDECAVCRD----GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 49
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 244
+DECA+CR+ C FHLACL L + + + C +C
Sbjct: 8 EDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 198 AYDD--ECAICREPMAKAKKLL----CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250
A DD ECA+C + ++ C H FH C+ W L +CP CR + V
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMW----LGSHSTCPLCRLTVVV 55
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYS-CPTCRKPLF 249
C IC +A + C HLF C+ + L M S CP+CR P F
Sbjct: 26 CQICEHILADPVETSCKHLFCRICIL----RCLKVMGSYCPSCRYPCF 69
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.7 bits (73), Expect = 0.43, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
++EC IC + A L C H F C+ W D+ N CP CR
Sbjct: 15 EEECCICMDGRADLI-LPCAHSFCQKCIDKWSDRHRN----CPICR 55
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 244
C++C E + + + C H F AC+ W + L + CP C
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWED-LERDFPCPVC 58
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 202 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246
+C IC E + + L CNH C +S +++ CP CR+
Sbjct: 17 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA---SLCCPFCRR 58
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 203 CAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTC 244
C IC E + ++ L C HL H C L +G Y CP C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLC 49
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 32.0 bits (71), Expect = 0.73, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 202 ECAICREPMAKAKKLLCNHLFHLACLR--SWLDQGLNEMYSCPTCRKPL 248
ECAIC + L C H+F C++ SWL + C CR+ +
Sbjct: 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK------RCALCRQEI 59
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.0 bits (71), Expect = 0.76, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
C IC E K C HL +CL +W + ++ CP CR
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQE---SDGQGCPFCR 68
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 31.6 bits (70), Expect = 0.86, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 19/67 (28%)
Query: 201 DECAICR----------EPMAKAKKLL-----CNHLFHLACLRSWLDQGLNEMYSCPTCR 245
D CAICR + K + + CNH FH C+ W+ Q CP C+
Sbjct: 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQ 71
Query: 246 KPLFVGR 252
+ V R
Sbjct: 72 QDWVVQR 78
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
C IC E K C HL +CL +W + ++ CP CR
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQE---SDGQGCPFCR 380
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 12/42 (28%)
Query: 218 CNHLFHLACLRSWLDQGLNEMYSCPTCRK--------PLFVG 251
C H+F CLR L +CPTCRK P+++G
Sbjct: 32 CGHVFCSQCLRD----SLKNANTCPTCRKKINHKRYHPIYIG 69
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 218 CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
C H+F CLR L +CPTCRK +
Sbjct: 97 CGHVFCSQCLRD----SLKNANTCPTCRKKI 123
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNE--MYSCPTCRKPLFVG 251
C IC E + + CNH F AC+ + N +CP CR P G
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 194 EELRAYDDECAICREPMAKAKKLLCNHL---FHLACLRSWLDQGLNEMYSCPTC 244
+E DD ICR ++CN FHL C L E +SC C
Sbjct: 16 DEFGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 195 ELRAYDDECAICREPMAKAKKLLC---NHLFHLACLRSWLDQGLNEMY-SCPTCR 245
E + + C +C +LLC N +H+ CL LD+ E Y CP+C+
Sbjct: 21 EKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246
+ D C +C++ C +H+ CL +++ +SCP C K
Sbjct: 10 HQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 218 CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
C H+F CLR L +CPTCRK +
Sbjct: 35 CGHVFCSQCLRD----SLKNANTCPTCRKKI 61
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 218 CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
C H+F CLR L +CPTCRK +
Sbjct: 28 CGHVFCSQCLRD----SLKNANTCPTCRKKI 54
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 218 CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
C H+F CLR L +CPTCRK +
Sbjct: 40 CGHVFCSQCLRD----SLKNANTCPTCRKKI 66
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 18/49 (36%)
Query: 201 DECAICR-------------EPMAKAKKL-----LCNHLFHLACLRSWL 231
D CAICR + A +++ +CNH FH C+ WL
Sbjct: 38 DNCAICRNHIXDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,575,445
Number of Sequences: 62578
Number of extensions: 484409
Number of successful extensions: 1199
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 52
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)