BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012963
(452 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/452 (72%), Positives = 378/452 (83%), Gaps = 8/452 (1%)
Query: 1 MFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLL 60
MFQALARDRLERLNASPS+TPWTYFRV+S L VL+VD+FWI++ L+ + T+ S+++LLL
Sbjct: 135 MFQALARDRLERLNASPSSTPWTYFRVYSVLFLVLSVDMFWIKLSLMTYNTIGSAVYLLL 194
Query: 61 FFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIR 120
FEP S+AFET+QA+L+HGFQLLD+W++H A +++C RSKF D++ AGSLLEWKG+L R
Sbjct: 195 LFEPCSIAFETLQALLIHGFQLLDMWINHLAVKNSDCQRSKFIDSMTAGSLLEWKGLLNR 254
Query: 121 NFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIA 180
N GFFLDMATL+MALGHY+HIWWL G+AFHLVDA+LFLNIRALLSAI+KRIKG+IKLRIA
Sbjct: 255 NLGFFLDMATLVMALGHYLHIWWLHGIAFHLVDAVLFLNIRALLSAILKRIKGYIKLRIA 314
Query: 181 LGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYS 240
LG LHAALPDATSEELRAYDDECAICREPMAKAK+L CNHLFHL CLRSWLDQGLNE+YS
Sbjct: 315 LGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYS 374
Query: 241 CPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNTGQTLPTGVFPNQTQPP 300
CPTCRKPLFVGR E E N R EVSSDEQLARQ L+RQNN L TG+FP +
Sbjct: 375 CPTCRKPLFVGRTENEVNPRTVEVSSDEQLARQ----LERQNNPVHALATGLFPAEVPDS 430
Query: 301 VEGSPWRNAGLDSSWLHAWPSQGVDGAGPSTAMRSVGLSRVQMMMRHLASVGETYAQTAI 360
VE RN GLD SWL W SQG D AGPST R+VGL RVQMMMRHLASVGE+YAQTA+
Sbjct: 431 VENDTSRNLGLDPSWLQTWSSQGSDVAGPSTTSRTVGLGRVQMMMRHLASVGESYAQTAL 490
Query: 361 EDTSWSLWPMNPSQASASGSPVPPAVPGRHPGNTGGAHARSTSRSANENIANILAMAETV 420
+D +WSLWPMNPSQAS S + VPP GR TGG H R+ S + NE++ NILAMAETV
Sbjct: 491 DDAAWSLWPMNPSQASTSSTTVPPGNGGR----TGGLHLRTVSNTTNESLTNILAMAETV 546
Query: 421 REVLPHMPEDLIFQDLQRTNSATITVNNLLQM 452
REV+PH+P+++IFQDLQRTNS +TVNNLLQM
Sbjct: 547 REVMPHVPDEIIFQDLQRTNSVAVTVNNLLQM 578
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/452 (70%), Positives = 374/452 (82%), Gaps = 9/452 (1%)
Query: 1 MFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLL 60
MFQALARDRL+RLNASPS+TPWTYFRV+SAL VL+ D+ WI++ L+++ T+ SS++LLL
Sbjct: 135 MFQALARDRLDRLNASPSSTPWTYFRVYSALFMVLSTDLCWIKLSLMIYNTVGSSVYLLL 194
Query: 61 FFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIR 120
FEP +AFET+QA+L+HGFQLLD+W++H A +++C RSKF+D++ AGSLLEWKG+L R
Sbjct: 195 LFEPCGIAFETLQALLIHGFQLLDMWINHLAVKNSDCQRSKFYDSMTAGSLLEWKGLLNR 254
Query: 121 NFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIA 180
N GFFLDMATL+MALGHY+HIWWL GMAFHLVDA+LFLNIRALLS+I+KRIKG+IKLR+A
Sbjct: 255 NLGFFLDMATLVMALGHYLHIWWLHGMAFHLVDAVLFLNIRALLSSILKRIKGYIKLRVA 314
Query: 181 LGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYS 240
LG LHAAL DATSEELR YDDECAICREPMAKAK+L CNHLFHL CLRSWLDQGLNE+YS
Sbjct: 315 LGALHAALLDATSEELRDYDDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYS 374
Query: 241 CPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNTGQTLPTGVFPNQTQPP 300
CPTCRKPLFVGR E EAN GEVSSDE LARQ +RQNN+ L TG+FP +T
Sbjct: 375 CPTCRKPLFVGRTESEANPSRGEVSSDEHLARQ----FERQNNSVHALTTGMFPTETPNF 430
Query: 301 VEGSPWRNAGLDSSWLHAWPSQGVDGAGPSTAMRSVGLSRVQMMMRHLASVGETYAQTAI 360
E PWRN+ +D SWL W QGVD G S RSVGL +VQ+MMRHLASVGE AQT +
Sbjct: 431 TESDPWRNSEVDPSWLQTWSDQGVDVVGSSAGSRSVGLGQVQLMMRHLASVGEGSAQTTL 490
Query: 361 EDTSWSLWPMNPSQASASGSPVPPAVPGRHPGNTGGAHARSTSRSANENIANILAMAETV 420
+D SW LWPMNPSQAS S + VPP GR TGG H R+ SR+AN N+A+ILAMAETV
Sbjct: 491 DDASWGLWPMNPSQASTSSTYVPPGAGGR----TGGLHLRTVSRAAN-NMASILAMAETV 545
Query: 421 REVLPHMPEDLIFQDLQRTNSATITVNNLLQM 452
REVLPH+P+++IFQDLQRTNS ++TVNNLLQM
Sbjct: 546 REVLPHVPDEIIFQDLQRTNSVSVTVNNLLQM 577
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 118/270 (43%), Gaps = 30/270 (11%)
Query: 5 LARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEP 64
L +DR E L+ SP+ ++ RV S L+ +L +C + T + E
Sbjct: 164 LCKDRFEYLSFSPTTPMSSHGRVLSLLIAMLLSCCGLAVVCCVTGYTHGMHTLAFMAAES 223
Query: 65 LSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGF 124
L V T IL + L D L+H E KG + F
Sbjct: 224 LLVTVRTAHVILRYVIHLWD--LNHEGT-------------------WEGKGTYVYYTDF 262
Query: 125 FLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHL 184
+++A L + L H+IH+ + + ++F+ +R L + +RI+ +G++
Sbjct: 263 VMELALLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNM 322
Query: 185 HAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 244
A AT EEL +D+CAIC + M A+KL C HLFH +CLRSWL+Q SCPTC
Sbjct: 323 EARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQD----TSCPTC 378
Query: 245 RKPLFVGRREIEANSRPGEVSSDEQLARQL 274
R L I SR E E L L
Sbjct: 379 RMSL-----NIADGSRAREDHQGENLDENL 403
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 415 AMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451
AMA ++E+ P +P L+ QDLQ T S IT +N+L+
Sbjct: 459 AMAHQIQEMFPQVPYHLVLQDLQMTRSVEITTDNILE 495
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 118/270 (43%), Gaps = 30/270 (11%)
Query: 5 LARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEP 64
L +DR E L+ SP+ ++ RV S L+ +L +C + T + E
Sbjct: 164 LCKDRFEYLSFSPTTPMSSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHTLAFMAAES 223
Query: 65 LSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGF 124
L V T IL + L D L+H E KG + F
Sbjct: 224 LLVTVRTAHVILRYVIHLWD--LNHEGT-------------------WEGKGTYVYYTDF 262
Query: 125 FLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHL 184
+++ L + L H+IH+ + + ++F+ +R L + +RI+ +G++
Sbjct: 263 VMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNM 322
Query: 185 HAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 244
A AT EEL +D+CAIC + M A+KL C HLFH +CLRSWL+Q SCPTC
Sbjct: 323 EARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDT----SCPTC 378
Query: 245 RKPLFVGRREIEANSRPGEVSSDEQLARQL 274
R L I N+R E E L L
Sbjct: 379 RMSL-----NIADNNRVREEHQGENLDENL 403
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 415 AMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451
AMA ++E+ P +P L+ QDLQ T S IT +N+L+
Sbjct: 459 AMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 495
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 31/245 (12%)
Query: 2 FQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLF 61
F LA DR++ + SP+ + +FRV S ++ + +D ++ T +S+ L+
Sbjct: 116 FHWLAEDRVDFMERSPNISWVFHFRVLSLMVLLGVMDFLFVNHACHSIITRGASVQLVFG 175
Query: 62 FEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRN 121
FE + + + + +D+ S N A + L G + K +L
Sbjct: 176 FEYAILMTMVLTTFIKYTLHTIDL---QSENPWDNKAVYMLYTELFTGFI---KVLL--- 226
Query: 122 FGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIAL 181
++ T+++ + H ++ +R M +L +R A+ I R A+
Sbjct: 227 ---YMAFMTIMIKV-HTFPLFAIRPM---------YLAMRQFKKAVTDAIMS----RRAI 269
Query: 182 GHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYS 240
+++ PDAT E+L+A D+ C ICRE M AKKL CNH+FH +CLRSW + +
Sbjct: 270 RNMNTLYPDATPEDLQATDNVCIICREEMVTGAKKLPCNHIFHSSCLRSWFQR----QQT 325
Query: 241 CPTCR 245
CPTCR
Sbjct: 326 CPTCR 330
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 31/245 (12%)
Query: 2 FQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLF 61
F LA DR++ + SP+ + +FR+ + +L + +D F++ T +S+ L+
Sbjct: 110 FHWLAEDRVDFMERSPNISWLFHFRILALMLLLGVLDAFFVSHAYNSLVTRGASVQLVFG 169
Query: 62 FEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRN 121
FE + + +++ F + LH S N +K L + +L+
Sbjct: 170 FE-----YAILMTMILAVF--IKYILHSVDLQSENPWDNKAVYMLYTELFTGFIKVLL-- 220
Query: 122 FGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIAL 181
++ T+++ + H ++ +R M +L +R A+ + R A+
Sbjct: 221 ---YMAFMTIMVKV-HTFPLFAIRPM---------YLAMRQFKKAVTDAVMS----RRAI 263
Query: 182 GHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYS 240
+++ PDAT+EEL+A D+ C ICRE M AK+L CNH+FH +CLRSW + +
Sbjct: 264 RNMNTLYPDATAEELQAMDNVCIICREEMVSGAKRLPCNHIFHTSCLRSWFQR----QQT 319
Query: 241 CPTCR 245
CPTCR
Sbjct: 320 CPTCR 324
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 31/245 (12%)
Query: 2 FQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLF 61
F LA DR++ + SP+ + +FR+ + +L + +D F++ +S+ L+
Sbjct: 110 FHWLAEDRVDFMERSPNISWLFHFRILALMLLLGVLDAFFVSHAYHSLVIRGASVQLVFG 169
Query: 62 FEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRN 121
FE + + +++ F + LH S N +K L + +L+
Sbjct: 170 FE-----YAILMTVILTVF--IKYILHSVDLQSENPWDNKAVYMLYTELFTGFIKVLL-- 220
Query: 122 FGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIAL 181
++ T+++ + H ++ +R M +L +R A+ I R A+
Sbjct: 221 ---YVAFMTIMVKV-HTFPLFAIRPM---------YLAMRQFKKAVTDAIMS----RRAI 263
Query: 182 GHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYS 240
+++ PDAT+EEL+A D+ C ICRE M AK+L CNH+FH +CLRSW + +
Sbjct: 264 RNMNTLYPDATAEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQR----QQT 319
Query: 241 CPTCR 245
CPTCR
Sbjct: 320 CPTCR 324
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 126/269 (46%), Gaps = 35/269 (13%)
Query: 2 FQALARDRLERLNASPSATPWTYFRVFSALLFVLAV-DIFWIRMCLLLFKTLDSSMFLLL 60
F LA DR++ + SP+ + W + +L+F+L + D ++ T +S+ L+
Sbjct: 116 FHWLAEDRVDFMERSPNIS-WLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVF 174
Query: 61 FFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIR 120
FE + + +++ F + LH S N +K L + +L+
Sbjct: 175 GFE-----YAILMTMVLTIF--IKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLL- 226
Query: 121 NFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIA 180
++ T+++ + H ++ +R M +L +R A+ I R A
Sbjct: 227 ----YMAFMTIMIKV-HTFPLFAIRPM---------YLAMRQFKKAVTDAIMS----RRA 268
Query: 181 LGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMY 239
+ +++ PDAT EEL+A D+ C ICRE M AK+L CNH+FH +CLRSW +
Sbjct: 269 IRNMNTLYPDATPEELQAVDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQR----QQ 324
Query: 240 SCPTCRKPLFVGRREIEANSRPGEVSSDE 268
+CPTCR + V R + A S P +D+
Sbjct: 325 TCPTCR--MDVLRASLPAQSPPPPEPADQ 351
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 126/269 (46%), Gaps = 35/269 (13%)
Query: 2 FQALARDRLERLNASPSATPWTYFRVFSALLFVLAV-DIFWIRMCLLLFKTLDSSMFLLL 60
F LA DR++ + SP+ + W + +L+F+L + D ++ T +S+ L+
Sbjct: 116 FHWLAEDRVDFMERSPNIS-WLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVF 174
Query: 61 FFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIR 120
FE + + +++ F + LH S N +K L + +L+
Sbjct: 175 GFE-----YAILMTMVLTIF--IKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLL- 226
Query: 121 NFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIA 180
++ T+++ + H ++ +R M +L +R A+ I R A
Sbjct: 227 ----YMAFMTIMIKV-HTFPLFAIRPM---------YLAMRQFKKAVTDAIMS----RRA 268
Query: 181 LGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMY 239
+ +++ PDAT EEL+A D+ C ICRE M AK+L CNH+FH +CLRSW +
Sbjct: 269 IRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQR----QQ 324
Query: 240 SCPTCRKPLFVGRREIEANSRPGEVSSDE 268
+CPTCR + V R + A S P +D+
Sbjct: 325 TCPTCR--MDVLRASLPAQSPPPPEPADQ 351
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 169 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAK-AKKLLCNHLFHLACL 227
K + I R A+ +++ PDAT EELR D+ C ICRE M +KKL C H+FH CL
Sbjct: 255 KALNDVIMSRRAIRNMNTLYPDATPEELRQSDNICIICREDMVNHSKKLPCGHIFHTTCL 314
Query: 228 RSWLDQGLNEMYSCPTCR 245
RSW + +CPTCR
Sbjct: 315 RSWFQR----QQTCPTCR 328
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 113/254 (44%), Gaps = 33/254 (12%)
Query: 2 FQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLF 61
F LA DR++ + SP T + R+ + L + D +++ T +S ++
Sbjct: 117 FHWLADDRVDMMERSPVITLRFHLRMMTVLAALGFADSYFVSSAYFTTITRGASAQIVFG 176
Query: 62 FEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRN 121
FE + + A+++H + LH + +K L A + L+
Sbjct: 177 FE-----YAILLALVLHV--TIKYLLHMHDLRNPQSWDNKAVYLLYAELFINLIRCLL-- 227
Query: 122 FGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIAL 181
+GFF ++M H ++ +R + ++RAL A + I R A+
Sbjct: 228 YGFF----AVVMLRVHTFPLFSVRP---------FYQSVRALHKAFLDVILS----RRAI 270
Query: 182 GHLHAALPDATSEELRAYDDECAICREPM---AKAKKLLCNHLFHLACLRSWLDQGLNEM 238
+++ P ++E+L A D C ICRE M A K+L C+H+FH CLRSW +
Sbjct: 271 NAMNSQFPVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQR----Q 326
Query: 239 YSCPTCRKPLFVGR 252
+CPTCR ++ GR
Sbjct: 327 QTCPTCRTDIWQGR 340
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 33/254 (12%)
Query: 2 FQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLF 61
F LA DR++ + SP T + R+ + L + D +++ T +S ++
Sbjct: 117 FHWLADDRVDMMERSPVITLRFHLRMMTVLAALGFADSYFVSSAYFSTITKGASSQIVFG 176
Query: 62 FEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRN 121
FE + + A+++H + LH + +K L A L+ ++
Sbjct: 177 FE-----YAILLALVLH--VTIKYLLHMHDLRNPQSWDNKAVYLLYAELLINLIRCVL-- 227
Query: 122 FGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIAL 181
+GFF ++M H ++ +R + ++RAL A + I R A+
Sbjct: 228 YGFF----AVIMLRVHTFPLFSVRP---------FYQSVRALHKAFLDVILS----RRAI 270
Query: 182 GHLHAALPDATSEELRAYDDECAICREPM---AKAKKLLCNHLFHLACLRSWLDQGLNEM 238
+++ P +++EL A D C ICRE M + K+L C+H+FH CLRSW +
Sbjct: 271 NAMNSQFPVVSNDELSAMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQR----Q 326
Query: 239 YSCPTCRKPLFVGR 252
+CPTCR ++ GR
Sbjct: 327 QTCPTCRTDIWQGR 340
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 174 FIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 233
F+K R A+ H +ALP+AT +L+A+DD CAIC + M AK C H FH CLR W
Sbjct: 593 FMKRRSAV-HKISALPEATPAQLQAFDDVCAICYQEMYSAKITRCRHFFHGVCLRKW--- 648
Query: 234 GLNEMYSCPTCRK 246
L CP C +
Sbjct: 649 -LYVQDRCPLCHE 660
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 40/237 (16%)
Query: 166 AIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPM--------------- 210
++ +RI+ + R A ++A P AT E+L D C ICRE M
Sbjct: 255 SLFRRIREHARFRQATRDMNAMYPTATEEQLTNSDRTCTICREEMFHPDHPPENTDEMEP 314
Query: 211 ------AKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEV 264
K+L C H+ H CLR+WL++ +CP CR+ + +G + +S G
Sbjct: 315 LPRGLDMTPKRLPCGHILHFHCLRNWLER----QQTCPICRRSV-IGNQ----SSPTGIP 365
Query: 265 SSDEQLARQLSMGLDRQNNTGQTLPTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGV 324
+S A Q++ + NT T T V P T +G P +S + P+
Sbjct: 366 ASPNVRATQIATQVPNPQNTPTT--TAV-PGITNSSNQGDP------QASTFNGVPNANS 416
Query: 325 DGAGPSTAMRSVGLSRVQMMMRHLASVGETYAQTAIEDTSWSLWPMNPSQASASGSP 381
G T S + R ++ +R ++ I S S NPS +G P
Sbjct: 417 SGFAAHTQDLSSVIPR-RIALRDGWTMLPIPGTRRIPTYSQSTSTTNPSATPTTGDP 472
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 172 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLL-CNHLFHLACLRSW 230
K F+ R A+ +++ LP+ L+ DD CAIC + ++ CNH FH CLR W
Sbjct: 517 KTFMNRRTAVKKINS-LPEIKGSHLQEIDDVCAICYHEFTTSARITPCNHYFHALCLRKW 575
Query: 231 LDQGLNEMYSCPTCRKPLFVGRREIEANSR---------PGEVSSDEQLARQLSMGLDRQ 281
L +CP C + +++ EI+ NS P E + E+ R+ + G DR+
Sbjct: 576 ----LYIQDTCPMCHQKVYI-EDEIKDNSNASNNNGFIAPNENPNPEEALREDAAGSDRE 630
Query: 282 NN 283
N
Sbjct: 631 LN 632
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 101/268 (37%), Gaps = 47/268 (17%)
Query: 184 LHAALPDATSEELRAYDDECAICREPM----------AKAKKLLCNHLFHLACLRSWLDQ 233
L+ L D + E+L D C IC + M +AK L C H+ H CL+SW+++
Sbjct: 301 LYEKLSDVSEEQLDDTDSMCIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLKSWMER 360
Query: 234 GLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNT--------- 284
+CP CR +F A ++ E + + L + G+D +
Sbjct: 361 S----QTCPICRLSVFANDSNSHATTQAREQTPPDLLQER---GIDEHIDVIGMQDMSVQ 413
Query: 285 ------GQTLPTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGAGPSTAMRSVGL 338
G + G N +G + D + A+P ++ + L
Sbjct: 414 SISLHEGTAVRRGTTGNCMNQAYDGGLLSHEERDQAGWVAFP---IEFRADNKVF--FNL 468
Query: 339 SRVQMMMRHLASVGETYAQTAIEDTSWSLWPMNPSQASASGSPVP-PAVPGRHPGNTGGA 397
+ Q + +AS Q + +P AS S S +P P++PG G +
Sbjct: 469 NDSQGDRQWMASYTSYPRQNMVNSD-------DPDNASESHSRIPSPSLPGSLEGTSSQV 521
Query: 398 HARSTSRSANENIANILAMA--ETVREV 423
+++ A N ++A + E +EV
Sbjct: 522 DVTVSAKDAPANACFVIATSKLEQTKEV 549
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 172 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 231
K F+ R A+ + +LP AT E+L ++D CAIC + M A C+H FH CL+ WL
Sbjct: 507 KSFLLRRDAVNKI-KSLPIATKEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKWL 565
Query: 232 DQGLNEMYSCPTC 244
+ E +CP C
Sbjct: 566 --YVQE--TCPLC 574
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 183 HLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCP 242
H ++P A++ +L+ ++D C+IC + M A C+H FH ACL+ WL + E +CP
Sbjct: 517 HKIQSMPTASTLQLQQHNDICSICFQDMKSAVITPCSHFFHAACLKKWLY--VQE--TCP 572
Query: 243 TCRKPLFVGRREIEANSRPG 262
C L + +++ S PG
Sbjct: 573 LCHGQL---KSQLQPTSSPG 589
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 172 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 231
K F+ R A+ + + LP AT E+L ++D CAIC + M A C+H FH CL+ W
Sbjct: 507 KSFLLRRDAVNKIKS-LPVATQEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKW- 564
Query: 232 DQGLNEMYSCPTC 244
L +CP C
Sbjct: 565 ---LYVQDTCPLC 574
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 172 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLL-CNHLFHLACLRSW 230
K F+ R A+ +++ LP+ L+ +D CAIC + ++ CNH FH CLR W
Sbjct: 517 KTFMNRRTAVKKINS-LPEIKGSRLQEINDVCAICYHEFTTSARITPCNHYFHALCLRKW 575
Query: 231 LDQGLNEMYSCPTCRKPLFVGRREIEANS 259
L + + +CP C + +++ +I+ NS
Sbjct: 576 L--YIQD--TCPMCHQKVYI-EDDIKDNS 599
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 172 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLL-CNHLFHLACLRSW 230
K F+ R A+ +++ LP+ L+ +D CAIC + ++ CNH FH CLR W
Sbjct: 517 KTFMNRRTAVKKINS-LPEIKGSRLQEINDVCAICYHEFTTSARITPCNHYFHALCLRKW 575
Query: 231 LDQGLNEMYSCPTCRKPLFVGRREIEANS 259
L +CP C + +++ +I+ NS
Sbjct: 576 ----LYIQDTCPMCHQKVYI-EDDIKDNS 599
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 172 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 231
K F+ R A+ + + LP AT E+L ++D C+IC + M A C+H FH CL+ WL
Sbjct: 507 KSFLLRRDAVNKIKS-LPVATKEQLEQHNDICSICYQDMNSAVITPCSHFFHPGCLKKWL 565
Query: 232 DQGLNEMYSCPTC 244
+ E +CP C
Sbjct: 566 --YVQE--TCPLC 574
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 172 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWL 231
K F+ R A+ + + LP +T E+L ++D C+IC + M A C+H FH CL+ WL
Sbjct: 507 KSFLLRRDAVNKIKS-LPVSTKEQLEQHNDICSICYQDMNSAVITPCSHFFHPGCLKKWL 565
Query: 232 DQGLNEMYSCPTC 244
+ E +CP C
Sbjct: 566 --YVQE--TCPLC 574
>sp|A8WWR3|HRDL1_CAEBR E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
briggsae GN=hrdl-1 PE=3 SV=1
Length = 578
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 103 FDTLAAGSLLEWKGILIRNFGFFLDMAT-----LLMALGHYIHIWWLRGMAFHLVDAILF 157
F +++ + + +R+F ++L++AT LL L + + G+ +L
Sbjct: 250 FRCISSSRVFSFNPDSVRHFNYWLELATNFACELLQFLSYAQLFVFAPGL--NLTSIFFL 307
Query: 158 LNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKAKKLL 217
+++ + + +++ + H+ +A P + DD C +C E + +++L
Sbjct: 308 YHMKLTYNCMREQLGRHRTHKKIFEHIESAYPSVKAAN---SDDRCIVCWELLGTSRRLP 364
Query: 218 CNHLFHLACLRSWLDQGLNEMYSCPTCR 245
C+H FH CL WL Q SCPTCR
Sbjct: 365 CSHQFHDWCLMWWLAQD----SSCPTCR 388
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 393 NTGGAHARSTSRSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451
G + R+A + +M ETV E+ P M + I DL+++ SA T+ N+L+
Sbjct: 428 EVGSSFGNIFGRAAEPTQEQLQSMLETVLEMFPQMSPETILADLRQSGSAQSTIENILE 486
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 202 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
EC +C+E A ++L CNHLFH +C+ WL+Q SCP CRK L
Sbjct: 230 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 275
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 192 TSEELRAY--DDECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246
T E L+ + + EC IC+E + K ++L C H FH CL+ WLD E SCP CR
Sbjct: 217 TEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLD----EHNSCPICRH 272
Query: 247 PLFVGRREIE 256
L ++ E
Sbjct: 273 ELPTDDQKYE 282
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 202 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
EC +C++ A + ++L CNHLFH C+ WL+Q SCP CRK L
Sbjct: 228 ECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQ----HDSCPVCRKSL 273
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 20/83 (24%)
Query: 183 HLHAALPDATSEELR--AYDDE-CAICREPM-------------AKAKKLLCNHLFHLAC 226
L L T E+L+ A DD C IC + + K K+L C H+ HL+C
Sbjct: 326 QLDDTLVTVTVEQLQNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSC 385
Query: 227 LRSWLDQGLNEMYSCPTCRKPLF 249
L++W+++ +CP CR P+F
Sbjct: 386 LKNWMERS----QTCPICRLPVF 404
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 177 LRIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSW-LD 232
L+ A G L + EE+ D C IC E P + L C H FH C+ W L
Sbjct: 230 LQNAFGQLQLRVVKEGDEEINPNGDSCVICFEHYKPNDIVRILTCKHFFHKNCIDPWILS 289
Query: 233 QGLNEMYSCPTCRKPLF--VG-RREIEANSRPGEVSSDEQLARQLSMGLDRQNN 283
G +CP C+ + +G + ++E + P +V +L LS + NN
Sbjct: 290 HG-----TCPICKCDILKVLGIQVDVENGTEPLQVLMSSELCETLSPSEEETNN 338
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 178 RIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSWLDQG 234
+ A+G L +E+ D CA+C E P + L CNH+FH C+ W
Sbjct: 252 KKAIGRLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPW---- 307
Query: 235 LNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLD--RQNNTGQTLPTGV 292
L E +CP C+ + IE + G VS ++ ++S ++N +T +G
Sbjct: 308 LLEHRTCPMCKCDILKALG-IEVDVEDGSVSLQVPVSNEISNSASSHEEDNRSETASSGY 366
Query: 293 FPNQ--TQPPVE 302
Q +PP+E
Sbjct: 367 ASVQGTDEPPLE 378
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 193 SEELRAYDDECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
+EE + EC +C+E ++L CNHLFH C+ WL+Q +CP CRK L
Sbjct: 218 TEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQ----HDTCPVCRKSL 272
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 27/199 (13%)
Query: 61 FFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIR 120
F + + VA E HG + + I+ GN + F+ + + KG+ I
Sbjct: 112 FTQKIKVASE-------HGARGVIIYNFPGTGNQVFPMSHQAFEDIVVVMIGNIKGMEIL 164
Query: 121 NFGFFLDMATLLMALGHYIHIWWLRG--MAFHLVDA-----ILFLNIRALLSAII--KRI 171
+ T+++ +G H+ WL ++F +V F +IR L A I +R
Sbjct: 165 HLIRKGVHVTVMVEVGRK-HVIWLNHYFVSFMIVTTATLAYFTFYHIRRLWVARIENRRW 223
Query: 172 KGFIK-LRIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACL 227
K + L+ A G L + EE+ D C IC E P + L C H FH C+
Sbjct: 224 KRLTRELKKAFGQLQVRVLKEGDEEVNPNADSCVICFEAYKPNEIVRILTCKHFFHKNCI 283
Query: 228 RSW-LDQGLNEMYSCPTCR 245
W L G +CP C+
Sbjct: 284 DPWILAHG-----TCPMCK 297
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 178 RIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSWLDQG 234
+ A+G L +E+ D CA+C E P + L CNH+FH C+ W
Sbjct: 255 KKAIGRLQLRTQKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHVFHKTCVDPW---- 310
Query: 235 LNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLD--RQNNTGQTLPTGV 292
L E +CP C+ + IE + G VS ++ + S ++N +T +G
Sbjct: 311 LLEHRTCPMCKCDILKALG-IEVDVEDGSVSLQVPVSNETSSNASPHEEDNRSETASSGY 369
Query: 293 FPNQ--TQPPVE 302
Q +PP+E
Sbjct: 370 ASVQGADEPPLE 381
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 178 RIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSWLDQG 234
+ A+G L E+ D CA+C E P + L CNH+FH C+ W
Sbjct: 252 KKAIGRLQLRTLKQGDREIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPW---- 307
Query: 235 LNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLD--RQNNTGQTLPTGV 292
L E +CP C+ + IE + G VS ++ ++S ++N +T +G
Sbjct: 308 LLEHRTCPMCKCDILKALG-IEVDVEDGSVSLQVPVSNEISNSASSHEEDNRSETASSGY 366
Query: 293 FPNQ--TQPPVE 302
Q +PP+E
Sbjct: 367 ASVQGADEPPLE 378
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 140 HIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAY 199
+ W G+ + + A ++I+ ++I H+ + L
Sbjct: 177 YAWGANGLDTIITQLLNQFENTGPPPADTEKIQALPTIQITEEHVGSGL----------- 225
Query: 200 DDECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
EC +C+E ++L CNHLFH C+ WL+Q +CP CRK L
Sbjct: 226 --ECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQ----HDTCPVCRKSL 271
>sp|P90859|HRDL1_CAEEL E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
elegans GN=hrdl-1 PE=1 SV=2
Length = 564
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANS 259
DD C +C E + +++L C+H FH CL WL Q SCPTCR + + +I
Sbjct: 332 DDRCVVCWELLGTSRRLPCSHQFHDWCLMWWLAQD----SSCPTCRCTIPSPQDQIR--- 384
Query: 260 RPGEVSSDEQL 270
+P EV + +L
Sbjct: 385 QPPEVGNSTRL 395
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 404 RSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451
R+A + M E VRE+ P M D+I DL+++ SA T+ N+L+
Sbjct: 424 RAAEPTEEQLQTMLEQVREMFPQMSVDIIMTDLRQSGSAQSTIENILE 471
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 202 ECAICREPMAKAKKLL----CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV----GRR 253
EC++C + + L C+H FHL C+ +WL N CP CR P+ + +
Sbjct: 134 ECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKN----CPLCRAPVLLITEPPHQ 189
Query: 254 EIEANSRPGEVSSDEQLARQLSMGLDRQNN 283
E E N +P SS++ RQ S R +N
Sbjct: 190 ETETNHQPDSESSNDLRGRQDSSRSRRNHN 219
>sp|Q9Z277|BAZ1B_MOUSE Tyrosine-protein kinase BAZ1B OS=Mus musculus GN=Baz1b PE=1 SV=2
Length = 1479
Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 168 IKRIKGFIKLRIALGHLHAALP-DATSEELRAYDDECAICREPMAKAKKLLC---NHLFH 223
I+ + F ++ + LG L A + D ++E R C +CR+ K +LC N FH
Sbjct: 1156 IREAQTFSRMHVLLGMLDACIKWDMSAENAR-----CKVCRKKGEDDKLILCDECNKAFH 1210
Query: 224 LACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSR 260
L CLR L + + + CP C+ P RR NSR
Sbjct: 1211 LFCLRPALYEVPDGEWQCPACQPP--TARR----NSR 1241
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 202 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
EC +C++ ++L CNHLFH C+ WL+Q SCP CRK L
Sbjct: 231 ECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQ----HDSCPVCRKSL 276
>sp|Q6AY01|RN133_RAT E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133
PE=2 SV=1
Length = 381
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 23/172 (13%)
Query: 129 ATLLMALGHYIHIWWLRG--MAFHLVDA-----ILFLNIRALLSAII--KRIKGFIK-LR 178
T+++ +G H+ WL ++F +V F +IR L A I +R K + L+
Sbjct: 173 VTVMVEVGRK-HVIWLNHYFVSFMIVTTATLAYFTFYHIRRLWVARIEDRRWKRLTRELK 231
Query: 179 IALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSW-LDQG 234
A G L + EE+ D C IC E P + L C H FH C+ W L G
Sbjct: 232 KAFGQLQVRILKEGDEEVSPNADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHG 291
Query: 235 LNEMYSCPTCRKPLFVG---RREIEANSRPGEVSSDEQLARQLSMGLDRQNN 283
+CP C+ + + +IE S +V +L S + NN
Sbjct: 292 -----TCPMCKCDILKALGIQMDIEDGSDSLQVLMSNELPGTFSAMEEELNN 338
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 169 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKA---KKLLCNHLFHLA 225
++I+ ++I H+ + L EC +C+E ++L CNHLFH
Sbjct: 207 EKIQALPTIQITEEHVGSGL-------------ECPVCKEDYTVGECVRQLPCNHLFHND 253
Query: 226 CLRSWLDQGLNEMYSCPTCRKPL 248
C+ WL+Q +CP CRK L
Sbjct: 254 CIIPWLEQ----HDTCPVCRKSL 272
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 194 EELRAYDDECAIC---REPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249
E D +C++C +P K +++ +C H FH+ C+ W L +CP CR L
Sbjct: 91 ESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLW----LTSHTTCPLCRLALI 146
Query: 250 VGR-REIEANSRPGEVSSDEQLARQ 273
R R+ + + P VS DE+++ Q
Sbjct: 147 PSRSRQSQDDPVPSLVSPDEEVSSQ 171
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
Query: 202 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248
EC +C+E K ++L CNH FH +C+ WL+ L++ +CP CRK L
Sbjct: 228 ECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLE--LHD--TCPVCRKSL 273
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 26/124 (20%)
Query: 187 ALPDATSEELRAYDDECAICREPMAKAKKL----LCNHLFHLACLRSWLDQGLNEMYSCP 242
A ++ + D ECAIC + + + +CNHLFH+ C+ +W L +CP
Sbjct: 108 AYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTW----LYSHATCP 163
Query: 243 TCRK----------------PLFVGRREIEANSRPGEV--SSDEQLARQLSMGLDRQNNT 284
CR PL R + + EV S +L+ ++S R N+T
Sbjct: 164 VCRSNLTAKSNKPGDEDDGVPLAAMRDHVVVDIETVEVAKSHHRRLSSEISGKFPRSNST 223
Query: 285 GQTL 288
G ++
Sbjct: 224 GHSM 227
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 169 KRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKA---KKLLCNHLFHLA 225
KR+K + + A+G L + L D CA+C EP + + L CNH FH
Sbjct: 228 KRLKA--EAKKAIGKLQLRTIKQGDKVLGPDGDSCAVCIEPYKPSDVVRILTCNHFFHKN 285
Query: 226 CLRSWLDQGLNEMYSCPTCR----KPLFVGRREIEANS 259
C+ W L E +CP C+ K L + E E S
Sbjct: 286 CIDPW----LLEHRTCPMCKCDILKSLGIAEDEEEGTS 319
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 200 DDECAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR---- 252
D EC++C+EP + +K L C H FH C+ W L + SCP CR L
Sbjct: 67 DLECSVCKEPAEEGQKYRILPCKHEFHEECILLW----LKKTNSCPLCRYELETDDPVYE 122
Query: 253 -----REIEANSRPGE 263
R+ EAN R E
Sbjct: 123 ELRRFRQDEANRRERE 138
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 187 ALP--DATSEELRAYDDECAICR---EPMAKAKKLLCNHLFHLACLRSWLDQGLNEMY-S 240
ALP + T L + ++CA+C E +AK++ C HL+H CL WL E++ S
Sbjct: 206 ALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWL-----ELHNS 260
Query: 241 CPTCRKPLFVGRREIEANSRPGEVSS---DEQLARQLSMGLDR 280
CP CR L + E R + +S D + Q S G +R
Sbjct: 261 CPVCRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDGDNR 303
>sp|Q8N7C7|RN148_HUMAN RING finger protein 148 OS=Homo sapiens GN=RNF148 PE=2 SV=2
Length = 305
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 138 YIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELR 197
Y+ + +A+ +D + L R S +R + ++ A+ L + EEL
Sbjct: 193 YLFTFLAATIAYFYLDCVWRLTPRVPNSFTRRRSQIKTDVKKAIDQLQLRVLKEGDEELD 252
Query: 198 AYDDECAIC---REPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245
+D C +C +P + L C H FH AC+ WL +CP C+
Sbjct: 253 LNEDNCVVCFDTYKPQDVVRILTCKHFFHKACIDPWLL----AHRTCPMCK 299
>sp|Q8WVZ7|RN133_HUMAN E3 ubiquitin-protein ligase RNF133 OS=Homo sapiens GN=RNF133 PE=2
SV=1
Length = 376
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 177 LRIALGHLHAALPDATSEELRAYDDECAICRE---PMAKAKKLLCNHLFHLACLRSW-LD 232
L+ G L + EE+ D C IC E P + L C H FH C+ W L
Sbjct: 230 LQNTFGQLQLRVVKEGDEEINPNGDSCVICFERYKPNDIVRILTCKHFFHKNCIDPWILP 289
Query: 233 QGLNEMYSCPTCRKPLF--VG-RREIEANSRPGEVSSDEQLARQLSMGLDRQNN 283
G +CP C+ + +G + +E + P +V +L LS + NN
Sbjct: 290 HG-----TCPICKCDILKVLGIQVVVENGTEPLQVLMSNELPETLSPSEEETNN 338
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 202 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250
EC IC E + + C H + CL +W L E SCPTCR+ L+
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECLLNW----LKESKSCPTCRQKLYT 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,591,748
Number of Sequences: 539616
Number of extensions: 6850173
Number of successful extensions: 26345
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 451
Number of HSP's that attempted gapping in prelim test: 26044
Number of HSP's gapped (non-prelim): 592
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)