Query 012963
Match_columns 452
No_of_seqs 503 out of 2192
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:07:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5243 HRD1 HRD ubiquitin lig 99.9 7.7E-27 1.7E-31 227.9 16.4 218 1-251 115-347 (491)
2 KOG0802 E3 ubiquitin ligase [P 99.9 6.1E-25 1.3E-29 235.7 16.2 221 1-250 113-342 (543)
3 KOG0804 Cytoplasmic Zn-finger 99.9 4E-24 8.6E-29 214.0 -2.0 113 201-327 176-299 (493)
4 KOG4628 Predicted E3 ubiquitin 99.4 3.5E-13 7.5E-18 134.6 5.0 75 175-252 202-281 (348)
5 PF13639 zf-RING_2: Ring finge 99.2 2.6E-12 5.5E-17 91.5 0.7 41 201-245 1-44 (44)
6 KOG0317 Predicted E3 ubiquitin 99.1 8.3E-11 1.8E-15 113.4 3.7 51 198-252 237-287 (293)
7 KOG0823 Predicted E3 ubiquitin 99.0 7.9E-11 1.7E-15 110.4 1.3 53 199-252 46-98 (230)
8 PHA02929 N1R/p28-like protein; 99.0 1.9E-10 4.1E-15 110.3 3.8 66 181-250 151-228 (238)
9 PF12678 zf-rbx1: RING-H2 zinc 99.0 1.5E-10 3.2E-15 91.6 0.8 43 199-245 18-73 (73)
10 PLN03208 E3 ubiquitin-protein 98.9 2.7E-10 5.9E-15 105.1 2.2 54 199-252 17-82 (193)
11 PF15227 zf-C3HC4_4: zinc fing 98.9 3.4E-10 7.4E-15 79.7 0.2 42 203-244 1-42 (42)
12 COG5540 RING-finger-containing 98.8 8.5E-10 1.8E-14 106.6 1.7 49 199-250 322-373 (374)
13 PF12861 zf-Apc11: Anaphase-pr 98.8 3E-09 6.4E-14 85.4 2.5 51 199-250 20-83 (85)
14 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.5E-09 3.3E-14 79.3 0.6 46 200-249 2-48 (50)
15 PF13923 zf-C3HC4_2: Zinc fing 98.7 2.7E-09 6E-14 73.8 0.4 38 203-244 1-39 (39)
16 cd00162 RING RING-finger (Real 98.7 6.9E-09 1.5E-13 72.8 2.3 44 202-248 1-45 (45)
17 KOG0828 Predicted E3 ubiquitin 98.7 5.4E-08 1.2E-12 99.6 9.6 50 198-250 569-635 (636)
18 KOG1734 Predicted RING-contain 98.7 4.1E-07 8.9E-12 86.9 13.2 52 198-251 222-283 (328)
19 KOG0320 Predicted E3 ubiquitin 98.6 1.7E-08 3.7E-13 91.0 2.7 47 201-251 132-180 (187)
20 PHA02926 zinc finger-like prot 98.6 2.2E-08 4.8E-13 93.5 3.2 53 199-251 169-232 (242)
21 smart00504 Ubox Modified RING 98.6 2.1E-08 4.5E-13 76.5 1.6 45 202-250 3-47 (63)
22 PF00097 zf-C3HC4: Zinc finger 98.5 2.2E-08 4.7E-13 69.9 0.4 40 203-244 1-41 (41)
23 smart00184 RING Ring finger. E 98.5 5.8E-08 1.3E-12 65.6 2.0 39 203-244 1-39 (39)
24 COG5574 PEX10 RING-finger-cont 98.5 6.4E-08 1.4E-12 92.5 1.9 50 199-251 214-264 (271)
25 TIGR00599 rad18 DNA repair pro 98.4 1E-07 2.2E-12 97.9 3.0 48 199-250 25-72 (397)
26 PF13445 zf-RING_UBOX: RING-ty 98.4 6.2E-08 1.3E-12 68.4 0.6 39 203-242 1-43 (43)
27 COG5194 APC11 Component of SCF 98.4 1.4E-07 3.1E-12 73.8 2.1 33 217-253 53-85 (88)
28 KOG1493 Anaphase-promoting com 98.4 1.3E-07 2.8E-12 73.5 1.6 50 200-250 20-82 (84)
29 KOG2164 Predicted E3 ubiquitin 98.3 2E-07 4.4E-12 96.5 1.3 54 200-253 186-240 (513)
30 PF14634 zf-RING_5: zinc-RING 98.3 2.7E-07 5.8E-12 65.6 1.5 41 202-246 1-44 (44)
31 smart00546 CUE Domain that may 98.2 4.6E-07 1E-11 64.0 1.1 39 414-452 3-42 (43)
32 KOG0287 Postreplication repair 98.2 4.9E-07 1.1E-11 88.9 1.1 47 202-252 25-71 (442)
33 PF02845 CUE: CUE domain; Int 98.2 4.6E-07 9.9E-12 63.8 0.3 38 415-452 3-41 (42)
34 KOG2930 SCF ubiquitin ligase, 98.1 1.6E-06 3.5E-11 71.3 2.0 47 201-251 47-110 (114)
35 PF04564 U-box: U-box domain; 98.1 1.3E-06 2.8E-11 69.1 1.0 48 201-251 5-52 (73)
36 COG5432 RAD18 RING-finger-cont 98.0 1.6E-06 3.4E-11 83.7 1.3 47 201-251 26-72 (391)
37 KOG1785 Tyrosine kinase negati 97.9 1.4E-05 3.1E-10 80.2 6.4 48 201-250 370-417 (563)
38 KOG2177 Predicted E3 ubiquitin 97.9 5E-06 1.1E-10 81.3 2.2 44 199-246 12-55 (386)
39 KOG0824 Predicted E3 ubiquitin 97.8 6.4E-06 1.4E-10 80.3 1.2 49 199-250 6-54 (324)
40 KOG4172 Predicted E3 ubiquitin 97.7 1.6E-05 3.4E-10 58.0 1.9 46 200-249 7-54 (62)
41 COG5219 Uncharacterized conser 97.7 1.6E-05 3.4E-10 87.1 2.5 47 201-249 1470-1523(1525)
42 TIGR00570 cdk7 CDK-activating 97.7 1.6E-05 3.5E-10 78.9 2.1 50 200-252 3-57 (309)
43 PF11793 FANCL_C: FANCL C-term 97.7 8.8E-06 1.9E-10 63.8 0.1 50 201-250 3-67 (70)
44 KOG0978 E3 ubiquitin ligase in 97.7 2.8E-05 6.1E-10 84.4 3.6 49 201-252 644-692 (698)
45 KOG4265 Predicted E3 ubiquitin 97.6 2.3E-05 5.1E-10 78.3 1.7 49 198-250 288-337 (349)
46 smart00744 RINGv The RING-vari 97.6 3.9E-05 8.5E-10 55.8 2.1 42 202-245 1-49 (49)
47 KOG0311 Predicted E3 ubiquitin 97.6 3E-05 6.5E-10 77.2 1.9 50 199-251 42-92 (381)
48 PF14835 zf-RING_6: zf-RING of 97.6 1.3E-05 2.8E-10 60.8 -0.5 45 202-252 9-54 (65)
49 PF13705 TRC8_N: TRC8 N-termin 97.5 0.00059 1.3E-08 71.9 10.1 89 3-94 360-449 (508)
50 KOG0827 Predicted E3 ubiquitin 97.4 6.9E-05 1.5E-09 75.3 1.8 47 201-248 5-55 (465)
51 KOG0825 PHD Zn-finger protein 97.3 0.00013 2.9E-09 78.7 3.0 48 201-252 124-174 (1134)
52 KOG1039 Predicted E3 ubiquitin 97.1 0.00018 4E-09 72.8 1.7 54 199-252 160-224 (344)
53 KOG4159 Predicted E3 ubiquitin 97.0 0.00024 5.3E-09 73.3 1.3 49 198-250 82-130 (398)
54 KOG3970 Predicted E3 ubiquitin 97.0 0.00045 9.8E-09 64.8 2.6 54 198-251 48-107 (299)
55 KOG4445 Uncharacterized conser 96.9 0.00044 9.5E-09 67.5 2.1 52 200-251 115-188 (368)
56 KOG2879 Predicted E3 ubiquitin 96.9 0.0071 1.5E-07 58.7 9.8 51 197-249 236-287 (298)
57 KOG1002 Nucleotide excision re 96.8 0.00085 1.8E-08 69.9 3.6 53 200-252 536-589 (791)
58 KOG1645 RING-finger-containing 96.8 0.00041 8.8E-09 70.4 1.0 48 199-248 3-55 (463)
59 COG5152 Uncharacterized conser 96.7 0.00074 1.6E-08 62.2 1.5 43 201-247 197-239 (259)
60 KOG1941 Acetylcholine receptor 96.6 0.0017 3.8E-08 65.5 3.4 46 200-247 365-414 (518)
61 KOG1571 Predicted E3 ubiquitin 96.5 0.00036 7.9E-09 70.0 -1.7 45 199-250 304-348 (355)
62 KOG0297 TNF receptor-associate 96.3 0.0011 2.4E-08 68.9 0.3 50 198-251 19-69 (391)
63 KOG2660 Locus-specific chromos 96.2 0.0019 4.1E-08 64.2 1.5 48 200-251 15-63 (331)
64 KOG2114 Vacuolar assembly/sort 96.2 0.0032 7E-08 69.3 3.2 40 201-247 841-881 (933)
65 PF11789 zf-Nse: Zinc-finger o 96.2 0.0011 2.5E-08 49.7 -0.2 43 199-243 10-53 (57)
66 KOG4692 Predicted E3 ubiquitin 96.0 0.0037 8E-08 62.4 2.4 49 198-250 420-468 (489)
67 KOG1813 Predicted E3 ubiquitin 95.7 0.0022 4.8E-08 62.8 -0.5 45 200-248 241-285 (313)
68 COG5222 Uncharacterized conser 95.6 0.01 2.3E-07 58.0 3.5 47 201-250 275-323 (427)
69 KOG1428 Inhibitor of type V ad 95.5 0.0064 1.4E-07 69.7 1.9 53 198-250 3484-3545(3738)
70 PF10367 Vps39_2: Vacuolar sor 95.3 0.0094 2E-07 49.9 1.9 30 199-228 77-108 (109)
71 KOG1814 Predicted E3 ubiquitin 95.0 0.025 5.3E-07 57.9 4.0 53 194-246 178-237 (445)
72 PHA02825 LAP/PHD finger-like p 94.8 0.017 3.8E-07 51.8 2.1 51 198-251 6-61 (162)
73 PHA02862 5L protein; Provision 94.7 0.021 4.5E-07 50.4 2.3 49 200-251 2-55 (156)
74 KOG1952 Transcription factor N 94.7 0.019 4.2E-07 63.3 2.6 54 194-247 185-245 (950)
75 PF11547 E3_UbLigase_EDD: E3 u 94.5 0.011 2.4E-07 42.1 0.2 38 415-452 11-49 (53)
76 KOG0826 Predicted E3 ubiquitin 94.5 0.07 1.5E-06 53.2 5.8 48 198-249 298-346 (357)
77 KOG4275 Predicted E3 ubiquitin 94.3 0.0045 9.7E-08 60.4 -2.8 43 200-250 300-343 (350)
78 PF14447 Prok-RING_4: Prokaryo 94.2 0.014 3E-07 43.1 0.1 46 201-252 8-53 (55)
79 PHA03096 p28-like protein; Pro 94.0 0.035 7.5E-07 55.2 2.6 46 201-247 179-232 (284)
80 PF14570 zf-RING_4: RING/Ubox 94.0 0.029 6.4E-07 40.4 1.5 43 203-248 1-47 (48)
81 PF10272 Tmpp129: Putative tra 93.5 0.061 1.3E-06 55.0 3.3 33 218-250 311-352 (358)
82 PF05883 Baculo_RING: Baculovi 93.3 0.035 7.6E-07 48.7 1.0 32 201-232 27-67 (134)
83 COG5236 Uncharacterized conser 93.2 0.048 1E-06 54.6 1.9 54 192-249 53-108 (493)
84 PF07800 DUF1644: Protein of u 93.2 0.16 3.4E-06 45.8 4.9 75 200-274 2-128 (162)
85 COG5175 MOT2 Transcriptional r 93.1 0.049 1.1E-06 54.3 1.9 50 199-251 13-66 (480)
86 PF12906 RINGv: RING-variant d 93.1 0.02 4.3E-07 41.2 -0.6 40 203-244 1-47 (47)
87 KOG3039 Uncharacterized conser 92.7 0.069 1.5E-06 51.2 2.2 52 199-254 220-275 (303)
88 KOG0802 E3 ubiquitin ligase [P 92.4 0.096 2.1E-06 57.0 3.1 60 186-253 465-524 (543)
89 KOG4185 Predicted E3 ubiquitin 92.3 0.06 1.3E-06 53.7 1.3 45 201-248 4-54 (296)
90 KOG0827 Predicted E3 ubiquitin 91.9 0.044 9.6E-07 55.6 -0.1 47 201-251 197-247 (465)
91 KOG1001 Helicase-like transcri 91.9 0.039 8.4E-07 61.2 -0.7 49 201-252 455-503 (674)
92 KOG3268 Predicted E3 ubiquitin 91.7 0.12 2.6E-06 47.2 2.3 51 201-251 166-230 (234)
93 PF05290 Baculo_IE-1: Baculovi 91.0 0.64 1.4E-05 40.7 6.0 49 201-251 81-134 (140)
94 KOG3161 Predicted E3 ubiquitin 90.7 0.15 3.2E-06 55.0 2.2 39 202-247 13-55 (861)
95 KOG1940 Zn-finger protein [Gen 90.4 0.14 3E-06 50.5 1.6 42 201-246 159-204 (276)
96 KOG2034 Vacuolar sorting prote 89.9 0.32 7E-06 54.4 4.0 34 199-232 816-851 (911)
97 KOG4739 Uncharacterized protei 88.8 0.12 2.5E-06 49.7 -0.2 44 202-251 5-50 (233)
98 KOG2932 E3 ubiquitin ligase in 88.4 0.15 3.2E-06 50.5 0.2 42 202-249 92-134 (389)
99 KOG3899 Uncharacterized conser 87.6 0.33 7.1E-06 47.7 2.0 35 217-251 324-367 (381)
100 KOG0298 DEAD box-containing he 87.4 0.26 5.6E-06 57.2 1.3 44 201-248 1154-1198(1394)
101 COG5183 SSM4 Protein involved 85.9 0.38 8.2E-06 53.2 1.6 52 199-252 11-69 (1175)
102 KOG3002 Zn finger protein [Gen 85.7 0.34 7.4E-06 48.6 1.0 42 201-250 49-92 (299)
103 PF04641 Rtf2: Rtf2 RING-finge 85.3 0.39 8.5E-06 47.2 1.2 50 198-252 111-164 (260)
104 KOG3800 Predicted E3 ubiquitin 85.2 0.51 1.1E-05 46.5 1.9 46 202-250 2-52 (300)
105 KOG3053 Uncharacterized conser 84.1 0.63 1.4E-05 45.0 2.0 52 199-250 19-83 (293)
106 KOG4362 Transcriptional regula 83.9 0.31 6.7E-06 53.5 -0.2 50 200-250 21-70 (684)
107 KOG2817 Predicted E3 ubiquitin 83.5 0.51 1.1E-05 48.4 1.2 45 201-246 335-382 (394)
108 KOG4367 Predicted Zn-finger pr 83.2 0.46 9.9E-06 49.1 0.7 34 200-233 4-37 (699)
109 KOG1100 Predicted E3 ubiquitin 82.3 0.28 6E-06 46.7 -1.2 40 202-249 160-200 (207)
110 PF08746 zf-RING-like: RING-li 81.3 0.6 1.3E-05 32.9 0.5 40 203-244 1-43 (43)
111 PF03854 zf-P11: P-11 zinc fin 77.9 0.62 1.4E-05 33.4 -0.3 42 203-250 5-47 (50)
112 COG5220 TFB3 Cdk activating ki 77.6 1.2 2.5E-05 42.8 1.4 47 199-248 9-63 (314)
113 KOG0801 Predicted E3 ubiquitin 76.7 0.61 1.3E-05 42.1 -0.7 29 196-224 173-204 (205)
114 KOG0825 PHD Zn-finger protein 71.4 1.7 3.6E-05 48.3 0.8 51 199-249 95-154 (1134)
115 KOG1609 Protein involved in mR 70.7 2.6 5.5E-05 42.1 2.0 49 200-250 78-135 (323)
116 KOG0309 Conserved WD40 repeat- 70.7 2 4.4E-05 47.4 1.3 26 214-243 1044-1069(1081)
117 PF02891 zf-MIZ: MIZ/SP-RING z 66.4 1.4 3E-05 32.1 -0.8 45 202-247 4-50 (50)
118 KOG4718 Non-SMC (structural ma 60.0 5 0.00011 38.0 1.5 42 201-246 182-224 (235)
119 KOG2068 MOT2 transcription fac 55.8 6.8 0.00015 39.6 1.7 46 201-250 250-299 (327)
120 smart00249 PHD PHD zinc finger 54.0 3.4 7.4E-05 28.2 -0.5 27 203-229 2-31 (47)
121 KOG1812 Predicted E3 ubiquitin 53.0 8.7 0.00019 40.0 2.1 35 200-234 146-184 (384)
122 KOG3579 Predicted E3 ubiquitin 51.6 6.1 0.00013 39.0 0.6 34 201-234 269-306 (352)
123 KOG1815 Predicted E3 ubiquitin 50.5 11 0.00023 40.1 2.4 52 199-250 69-127 (444)
124 KOG0943 Predicted ubiquitin-pr 50.1 11 0.00024 44.1 2.4 39 414-452 190-229 (3015)
125 KOG3039 Uncharacterized conser 48.3 7.3 0.00016 37.7 0.6 33 201-233 44-76 (303)
126 PF06844 DUF1244: Protein of u 47.6 11 0.00024 29.0 1.4 14 221-234 11-24 (68)
127 KOG0269 WD40 repeat-containing 46.0 8.8 0.00019 42.7 0.8 38 202-243 781-820 (839)
128 KOG2066 Vacuolar assembly/sort 45.1 11 0.00025 42.1 1.5 35 199-233 783-824 (846)
129 KOG1829 Uncharacterized conser 44.6 10 0.00022 41.4 1.1 25 215-246 534-558 (580)
130 COG5109 Uncharacterized conser 44.0 11 0.00024 37.7 1.2 44 201-245 337-383 (396)
131 PF07191 zinc-ribbons_6: zinc- 43.5 1.7 3.6E-05 34.0 -3.7 41 201-250 2-42 (70)
132 PF04710 Pellino: Pellino; In 40.0 9.9 0.00021 39.3 0.1 50 197-249 274-339 (416)
133 PF04216 FdhE: Protein involve 39.9 4.2 9.1E-05 40.6 -2.6 43 200-246 172-219 (290)
134 smart00132 LIM Zinc-binding do 34.4 10 0.00022 24.8 -0.6 34 203-248 2-37 (39)
135 KOG4185 Predicted E3 ubiquitin 32.7 23 0.00051 35.1 1.5 46 200-248 207-266 (296)
136 KOG3113 Uncharacterized conser 31.8 22 0.00047 34.7 1.0 49 198-252 109-161 (293)
137 PF04905 NCD2: NAB conserved r 31.6 12 0.00026 33.9 -0.7 22 410-431 37-58 (164)
138 KOG3005 GIY-YIG type nuclease 31.5 25 0.00054 34.6 1.3 49 201-249 183-243 (276)
139 PF10571 UPF0547: Uncharacteri 31.2 18 0.0004 22.6 0.3 8 203-210 3-10 (26)
140 PF13901 DUF4206: Domain of un 30.6 16 0.00034 34.6 -0.2 39 199-246 151-197 (202)
141 KOG3842 Adaptor protein Pellin 28.7 30 0.00066 34.8 1.4 51 200-250 341-415 (429)
142 COG3492 Uncharacterized protei 28.5 36 0.00079 27.9 1.6 14 221-234 42-55 (104)
143 TIGR01562 FdhE formate dehydro 28.2 20 0.00044 36.1 0.1 43 200-246 184-232 (305)
144 PF04423 Rad50_zn_hook: Rad50 28.1 31 0.00067 25.2 1.1 13 239-251 21-33 (54)
145 PF02148 zf-UBP: Zn-finger in 25.8 4.2 9E-05 30.8 -4.1 42 271-317 17-60 (63)
146 PF00412 LIM: LIM domain; Int 25.8 11 0.00024 27.3 -1.7 37 203-251 1-39 (58)
147 PF04710 Pellino: Pellino; In 25.3 23 0.00051 36.7 0.0 50 200-249 328-401 (416)
148 PLN02189 cellulose synthase 24.8 46 0.001 38.9 2.1 48 200-250 34-88 (1040)
149 PRK03564 formate dehydrogenase 23.5 19 0.00042 36.3 -1.0 44 199-246 186-234 (309)
150 PF05715 zf-piccolo: Piccolo Z 23.0 38 0.00083 25.6 0.7 17 238-254 2-18 (61)
151 KOG3726 Uncharacterized conser 22.7 2.4E+02 0.0053 31.5 7.0 38 201-245 655-696 (717)
152 KOG4501 Transcription coactiva 22.5 47 0.001 35.8 1.6 40 412-451 431-470 (707)
153 KOG0824 Predicted E3 ubiquitin 22.2 20 0.00043 35.9 -1.2 48 198-249 103-151 (324)
154 PF06638 Strabismus: Strabismu 21.7 1.6E+02 0.0034 31.8 5.2 35 20-54 161-195 (505)
155 KOG1245 Chromatin remodeling c 21.2 46 0.00099 40.5 1.3 49 200-248 1108-1159(1404)
156 PF14569 zf-UDP: Zinc-binding 20.7 1.1E+02 0.0024 24.5 2.9 48 200-250 9-63 (80)
157 PLN02436 cellulose synthase A 20.7 61 0.0013 38.0 2.1 48 200-250 36-90 (1094)
158 KOG3842 Adaptor protein Pellin 20.1 30 0.00066 34.8 -0.4 51 195-248 285-351 (429)
159 cd04718 BAH_plant_2 BAH, or Br 20.0 33 0.00071 30.9 -0.2 30 222-251 2-31 (148)
No 1
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.7e-27 Score=227.86 Aligned_cols=218 Identities=24% Similarity=0.449 Sum_probs=154.9
Q ss_pred ChhhhHhHHHhhhcCCCCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhccchhhHHHHHHHHHh
Q 012963 1 MFQALARDRLERLNASPSATPWT--YFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVH 78 (452)
Q Consensus 1 ~Fh~L~~dR~e~l~~sp~~~~~~--h~R~~~lL~~ll~~d~~~i~~~~~~~~~~g~s~~ll~~fe~~~l~~~~l~~ll~y 78 (452)
+|||++++|.|.+. --++...+ ..|+.+++.++.++|..+|..|+......+.+...++.+|+..+ ...++..
T Consensus 115 vfhwil~~R~er~~-~~st~~~~~ifSrfS~~~~lL~ild~~li~~CiSs~~liD~~~lfL~~c~F~~~-ll~l~s~--- 189 (491)
T COG5243 115 VFHWILSFRTERLQ-IQSTDQRFHIFSRFSCAYFLLSILDASLIYLCISSEHLIDKSTLFLFVCEFSVL-LLNLTSE--- 189 (491)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHhhhhhhHHHHHHHHHHHH-HHHHHHh---
Confidence 59999999999773 23344444 47999999999999999999999754444444333444443221 1111111
Q ss_pred hhhhhhHhhhccCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHH
Q 012963 79 GFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFL 158 (452)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~we~kg~~i~y~~f~~~l~~l~~~l~~~l~~~~~~g~~l~lv~~vl~~ 158 (452)
.+..+.-. ++..+.+ +.|..+.++.++..|=++++.+...++..+..+-+|+.+++.++.
T Consensus 190 --------------~n~~cV~n--~~~~ddD---d~rs~~~f~~~v~y~g~tllays~l~~~~~~~~r~Pi~l~r~~~t- 249 (491)
T COG5243 190 --------------ANKLCVYN--YEARDDD---DERSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVPIYLIRQMYT- 249 (491)
T ss_pred --------------hcccceee--ccccccc---ccceeeeeeeehHHHHHHHHHHHHHHHhhccchhchHHHHHHHHH-
Confidence 01111000 0001111 345666677777777777777776666666666788887766433
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHhhhhhhhCCCCChHHhhccccccccccchh-h------------hhhhcccchhhHHH
Q 012963 159 NIRALLSAIIKRIKGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPM-A------------KAKKLLCNHLFHLA 225 (452)
Q Consensus 159 ~ir~l~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~l~~~~~~C~ICl~~~-~------------~~~~l~C~H~Fh~~ 225 (452)
.+.++.++++.+.+++++.|++++.+|.++.|++.+.|..|.||+|++ . .|++|||||.||.+
T Consensus 250 ----~~~AL~~~i~~~~~~~r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~ 325 (491)
T COG5243 250 ----CFYALFRRIREHARFRRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLH 325 (491)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHH
Confidence 344677889999999999999999999999999999999999999995 3 25899999999999
Q ss_pred HHHHHHhhcccccccCCCCCCccccc
Q 012963 226 CLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 226 Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
|++.|+++ +++||+||.++..+
T Consensus 326 CLknW~ER----qQTCPICr~p~ifd 347 (491)
T COG5243 326 CLKNWLER----QQTCPICRRPVIFD 347 (491)
T ss_pred HHHHHHHh----ccCCCcccCccccc
Confidence 99999999 79999999996543
No 2
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.1e-25 Score=235.71 Aligned_cols=221 Identities=33% Similarity=0.454 Sum_probs=179.5
Q ss_pred ChhhhHhHHHhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCccchhhhhhccchhhHHHHHHHHHhh
Q 012963 1 MFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFK-TLDSSMFLLLFFEPLSVAFETMQAILVHG 79 (452)
Q Consensus 1 ~Fh~L~~dR~e~l~~sp~~~~~~h~R~~~lL~~ll~~d~~~i~~~~~~~~-~~g~s~~ll~~fe~~~l~~~~l~~ll~y~ 79 (452)
+||||++||+++|+++|..+.+.|.|+...+..+...|..++..++...+ ..+.++.+.+.++++++.+.+....+.|.
T Consensus 113 ~~~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~s~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~y~ 192 (543)
T KOG0802|consen 113 VFHLLASDRLPRLFFSPLITTLNHFRVVSVLFALLIVDGHLVYNSLKTAYRTYGLSMLIELTFPSLLVVFWTALVILQYV 192 (543)
T ss_pred HHHHHHHhHHHHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeccchHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999988876655 77888888888998887777776666655
Q ss_pred hhhhhHhhhccCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHh
Q 012963 80 FQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLN 159 (452)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~we~kg~~i~y~~f~~~l~~l~~~l~~~l~~~~~~g~~l~lv~~vl~~~ 159 (452)
+.... +. .-..|+++..+..+.+...+...+...+.++.+.+.++++++++...+....
T Consensus 193 l~~~~-----------~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 251 (543)
T KOG0802|consen 193 LHSTA-----------DH----------IHIRSEDLSLLTFTLIIFGCMTLLVLLIMSAVISLVVHGILLGLVADLYNTP 251 (543)
T ss_pred Hhcch-----------hh----------cCcccCccceeechhHHHhhhhHHHHHhhhHHHHHHHhHhhhhhhHHHhhhh
Confidence 43221 00 0123577888888888888888888888888888888888888887644433
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhh-hhhhCCCCChHH--hhccccccccccchhhh-----hhhcccchhhHHHHHHHHH
Q 012963 160 IRALLSAIIKRIKGFIKLRIALGH-LHAALPDATSEE--LRAYDDECAICREPMAK-----AKKLLCNHLFHLACLRSWL 231 (452)
Q Consensus 160 ir~l~~~~~~~~~~~~~~r~~~~~-~~~~l~~~~~~~--l~~~~~~C~ICl~~~~~-----~~~l~C~H~Fh~~Cl~~Wl 231 (452)
+....++.....+.++.... +...++.++.++ +.+.++.|+||+|.+.. +++++|+|+||..|+++|+
T Consensus 252 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~ 327 (543)
T KOG0802|consen 252 ----FLEVERRLRELAPLRRVILATLQTGLPGATLEERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWF 327 (543)
T ss_pred ----hhhHHHHccchHHHHHHhhccccccccccChHHhhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHH
Confidence 34566677777788887777 888889999887 77889999999999988 7899999999999999999
Q ss_pred hhcccccccCCCCCCcccc
Q 012963 232 DQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 232 ~~~~~~~~~CP~CR~~~~~ 250 (452)
++ .++||+||..+..
T Consensus 328 er----~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 328 ER----QQTCPTCRTVLYD 342 (543)
T ss_pred HH----hCcCCcchhhhhc
Confidence 99 6999999995544
No 3
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.87 E-value=4e-24 Score=213.99 Aligned_cols=113 Identities=27% Similarity=0.553 Sum_probs=100.9
Q ss_pred cccccccchhhhhh----hcccchhhHHHHHHHHHhhcccccccCCCCCCcccccccCcccCCCCcccCchHHH-----H
Q 012963 201 DECAICREPMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQL-----A 271 (452)
Q Consensus 201 ~~C~ICl~~~~~~~----~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 271 (452)
++||||+|.|++.+ .+.|+|.||..|+.+|-.. +||+||.... +.......|..|+..+++ |
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~------scpvcR~~q~---p~~ve~~~c~~c~~~~~LwicliC 246 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS------SCPVCRYCQS---PSVVESSLCLACGCTEDLWICLIC 246 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhcccC------cChhhhhhcC---cchhhhhhhhhhcccccEEEEEEc
Confidence 69999999998753 5689999999999999984 9999999665 344456678888877774 9
Q ss_pred HHHhcccCCCCCCC-Ccc-cCCCCCCCCCCCCCCCCcccCCCCCcccccCCCCCCCCC
Q 012963 272 RQLSMGLDRQNNTG-QTL-PTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGA 327 (452)
Q Consensus 272 ~~~~~g~~~~~~~~-~~~-~~~~~p~~~~~~~~~~~wd~aG~~~s~~~~~~~~~~dg~ 327 (452)
+.++||||.++||. ||. +.|+|+++++ ++||||||| |+||||+++++.|||
T Consensus 247 g~vgcgrY~eghA~rHweet~H~yalel~---tqrVWDYAG--DnYVhRl~~~~~dGk 299 (493)
T KOG0804|consen 247 GNVGCGRYKEGHARRHWEETGHCYALELE---TQRVWDYAG--DNYVHRLPQSKTDGK 299 (493)
T ss_pred cceecccccchhHHHHHHhhcceEEEeec---ceeeeeccc--chhhhhccccCCCCc
Confidence 99999999999998 999 9999999999 999999999 999999999999997
No 4
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.5e-13 Score=134.56 Aligned_cols=75 Identities=31% Similarity=0.617 Sum_probs=57.6
Q ss_pred hHHHHHhhhhhhhCCCCChHHhhcc--ccccccccchhhhh---hhcccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 175 IKLRIALGHLHAALPDATSEELRAY--DDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 175 ~~~r~~~~~~~~~l~~~~~~~l~~~--~~~C~ICl~~~~~~---~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.+.++..++..+++|..+..+..+. .++|+||+|+|.++ +.|||+|.||..||++|+.+. ...||+||+++.
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~ 278 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIR 278 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCC
Confidence 4555666777777877776554322 14899999999876 457999999999999999884 467999999876
Q ss_pred ccc
Q 012963 250 VGR 252 (452)
Q Consensus 250 ~~~ 252 (452)
...
T Consensus 279 ~~~ 281 (348)
T KOG4628|consen 279 TDS 281 (348)
T ss_pred CCC
Confidence 543
No 5
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.21 E-value=2.6e-12 Score=91.48 Aligned_cols=41 Identities=49% Similarity=1.176 Sum_probs=35.1
Q ss_pred cccccccchhhh---hhhcccchhhHHHHHHHHHhhcccccccCCCCC
Q 012963 201 DECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245 (452)
Q Consensus 201 ~~C~ICl~~~~~---~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 245 (452)
++|+||++++.. ...++|+|.||.+||.+|+++ +.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 479999999974 356799999999999999998 57999997
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.3e-11 Score=113.35 Aligned_cols=51 Identities=24% Similarity=0.710 Sum_probs=45.6
Q ss_pred ccccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 198 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
+....|.+|+|....+..+||||+||+.||.+|+.. ...||+||..+.+.+
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e----k~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE----KAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc----ccCCCcccccCCCcc
Confidence 445789999999999999999999999999999998 578999999887654
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.9e-11 Score=110.45 Aligned_cols=53 Identities=30% Similarity=0.663 Sum_probs=46.8
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
...+|.||+|.-++++.+.|||.||+.||.+|++.... .+.||+||..+..++
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~-~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPN-SKECPVCKAEVSIDT 98 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCC-CeeCCccccccccce
Confidence 45689999999999999999999999999999987544 588999999987654
No 8
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.01 E-value=1.9e-10 Score=110.32 Aligned_cols=66 Identities=33% Similarity=0.753 Sum_probs=48.0
Q ss_pred hhhhhhhCCCCChH--Hhh--ccccccccccchhhhh--------hhcccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 181 LGHLHAALPDATSE--ELR--AYDDECAICREPMAKA--------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 181 ~~~~~~~l~~~~~~--~l~--~~~~~C~ICl~~~~~~--------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
.+.+...+|....+ ++. ..+.+|+||++.+.++ +.++|+|.||..||.+|+.+ +.+||+||.++
T Consensus 151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~----~~tCPlCR~~~ 226 (238)
T PHA02929 151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE----KNTCPVCRTPF 226 (238)
T ss_pred hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc----CCCCCCCCCEe
Confidence 34444556655432 111 2467999999997653 34589999999999999987 68999999987
Q ss_pred cc
Q 012963 249 FV 250 (452)
Q Consensus 249 ~~ 250 (452)
..
T Consensus 227 ~~ 228 (238)
T PHA02929 227 IS 228 (238)
T ss_pred eE
Confidence 53
No 9
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.96 E-value=1.5e-10 Score=91.58 Aligned_cols=43 Identities=49% Similarity=1.143 Sum_probs=34.8
Q ss_pred cccccccccchhhhh-------------hhcccchhhHHHHHHHHHhhcccccccCCCCC
Q 012963 199 YDDECAICREPMAKA-------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~-------------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 245 (452)
.++.|+||++.+.++ ...+|||.||..||.+|++. +.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ----NNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT----SSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc----CCcCCCCC
Confidence 355799999999431 23489999999999999998 57999998
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.95 E-value=2.7e-10 Score=105.10 Aligned_cols=54 Identities=28% Similarity=0.655 Sum_probs=44.6
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhc------------ccccccCCCCCCcccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG------------LNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~------------~~~~~~CP~CR~~~~~~~ 252 (452)
.+.+|+||++.+.+++.++|||.||+.||.+|+... ......||+||..+...+
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 456899999999999999999999999999998632 112468999999997644
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.88 E-value=3.4e-10 Score=79.69 Aligned_cols=42 Identities=31% Similarity=0.759 Sum_probs=32.8
Q ss_pred cccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCC
Q 012963 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 244 (452)
Q Consensus 203 C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 244 (452)
|+||++.|.+|+.|+|||+||..||.+|.++.......||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999987754333689988
No 12
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.5e-10 Score=106.58 Aligned_cols=49 Identities=37% Similarity=0.798 Sum_probs=41.5
Q ss_pred cccccccccchhhhh---hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~---~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+-+|+||++.|.+. +.|||+|.||..|+.+|+... +..||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y---~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY---SNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh---cccCCccCCCCCC
Confidence 356899999999654 467999999999999999843 5899999998864
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.78 E-value=3e-09 Score=85.38 Aligned_cols=51 Identities=37% Similarity=0.828 Sum_probs=40.1
Q ss_pred cccccccccchhhhh-------------hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKA-------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~-------------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.++.|.||+..|+.. +.-.|+|.||..||.+|++++.. +..||+||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~-~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS-KGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC-CCCCCCcCCeeee
Confidence 367899999998731 12279999999999999987533 5799999998754
No 14
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.77 E-value=1.5e-09 Score=79.30 Aligned_cols=46 Identities=39% Similarity=0.820 Sum_probs=40.2
Q ss_pred ccccccccchhhhhhhcccchh-hHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 200 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
+..|.||++...+...+||||. ||..|..+|++. ...||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR----KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT----TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc----CCCCCcCChhhc
Confidence 4589999999988888999999 999999999986 689999999874
No 15
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.71 E-value=2.7e-09 Score=73.82 Aligned_cols=38 Identities=29% Similarity=0.835 Sum_probs=33.3
Q ss_pred cccccchhhhh-hhcccchhhHHHHHHHHHhhcccccccCCCC
Q 012963 203 CAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 244 (452)
Q Consensus 203 C~ICl~~~~~~-~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 244 (452)
|+||++.+.++ +.++|||.||.+|+.+|+++ +..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~----~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK----NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC----TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC----cCCCcCC
Confidence 89999999998 57899999999999999998 5899998
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.71 E-value=6.9e-09 Score=72.78 Aligned_cols=44 Identities=41% Similarity=1.057 Sum_probs=36.8
Q ss_pred ccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 202 ECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
+|+||++.+..+..+ +|+|.||..|+..|+.++ ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~---~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG---KNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC---cCCCCCCCCcC
Confidence 599999999666555 599999999999999873 47899999753
No 17
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.4e-08 Score=99.56 Aligned_cols=50 Identities=36% Similarity=0.850 Sum_probs=39.7
Q ss_pred ccccccccccchhhh------h-----------hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 198 AYDDECAICREPMAK------A-----------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~------~-----------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
+...+|+||+.+.+- + ..+||.|+||..|+.+|.+.. +..||+||++++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y---kl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY---KLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh---cccCCccCCCCCC
Confidence 345689999998751 1 235999999999999999953 4699999998864
No 18
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4.1e-07 Score=86.92 Aligned_cols=52 Identities=35% Similarity=0.795 Sum_probs=42.0
Q ss_pred ccccccccccchhhh----------hhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 198 AYDDECAICREPMAK----------AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~----------~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+|..|+||-..+.. ..+|.|+|+||..||+.|...++ .++||.|+..+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK--kqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK--KQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC--CCCCchHHHHhhHh
Confidence 356789999988753 23689999999999999986543 58999999988654
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.7e-08 Score=91.05 Aligned_cols=47 Identities=30% Similarity=0.733 Sum_probs=40.8
Q ss_pred cccccccchhhhh--hhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 201 DECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 201 ~~C~ICl~~~~~~--~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
..|+|||+.+.+. +.+.|||+||..||+.-++. ...||+||+.+..+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~----~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN----TNKCPTCRKKITHK 180 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHh----CCCCCCcccccchh
Confidence 5799999999764 45799999999999999988 68999999977653
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.61 E-value=2.2e-08 Score=93.53 Aligned_cols=53 Identities=28% Similarity=0.628 Sum_probs=40.2
Q ss_pred cccccccccchhhh---------hhhcccchhhHHHHHHHHHhhcc--cccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAK---------AKKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~---------~~~l~C~H~Fh~~Cl~~Wl~~~~--~~~~~CP~CR~~~~~~ 251 (452)
.+.+|+||+|..-+ +...+|+|.||..||++|.+.+. ....+||+||..+..-
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 46799999998632 23458999999999999998531 1235799999987643
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.57 E-value=2.1e-08 Score=76.52 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=41.5
Q ss_pred ccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 202 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.|+||.+.+.+++.++|||+|+..||.+|+++ +.+||.|+.++..
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~----~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLS----HGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH----CCCCCCCcCCCCh
Confidence 69999999999999999999999999999987 5799999998754
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.52 E-value=2.2e-08 Score=69.90 Aligned_cols=40 Identities=43% Similarity=1.032 Sum_probs=35.6
Q ss_pred cccccchhhhhh-hcccchhhHHHHHHHHHhhcccccccCCCC
Q 012963 203 CAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTC 244 (452)
Q Consensus 203 C~ICl~~~~~~~-~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 244 (452)
|+||++.+.++. .++|||.||..|+.+|++.. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~--~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS--GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT--SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc--CCccCCcC
Confidence 899999999988 88999999999999999842 26789998
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.49 E-value=5.8e-08 Score=65.62 Aligned_cols=39 Identities=41% Similarity=1.054 Sum_probs=34.4
Q ss_pred cccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCC
Q 012963 203 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 244 (452)
Q Consensus 203 C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 244 (452)
|+||++.......++|+|.||..|+..|++.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~---~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG---NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC---cCCCCCC
Confidence 88999997778889999999999999999832 5789988
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.4e-08 Score=92.51 Aligned_cols=50 Identities=32% Similarity=0.697 Sum_probs=43.6
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHH-HHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRS-WLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~-Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++....+..++|||+||+.||.. |-.++ ...||+||+.+..+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k---~~~CplCRak~~pk 264 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK---YEFCPLCRAKVYPK 264 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhc---cccCchhhhhccch
Confidence 4678999999999999999999999999998 98774 34599999987654
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=1e-07 Score=97.94 Aligned_cols=48 Identities=27% Similarity=0.546 Sum_probs=43.1
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
....|+||++.+..++.++|+|.||..||..|+.. ...||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~----~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN----QPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC----CCCCCCCCCcccc
Confidence 45689999999999999999999999999999987 4689999998764
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.41 E-value=6.2e-08 Score=68.40 Aligned_cols=39 Identities=31% Similarity=0.810 Sum_probs=23.5
Q ss_pred cccccchhhh----hhhcccchhhHHHHHHHHHhhcccccccCC
Q 012963 203 CAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCP 242 (452)
Q Consensus 203 C~ICl~~~~~----~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP 242 (452)
|+||+| |.+ |+.|+|||+|+.+||.++..++......||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 789999999999999999986422246776
No 27
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.39 E-value=1.4e-07 Score=73.81 Aligned_cols=33 Identities=36% Similarity=0.810 Sum_probs=29.2
Q ss_pred ccchhhHHHHHHHHHhhcccccccCCCCCCccccccc
Q 012963 217 LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 253 (452)
Q Consensus 217 ~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~ 253 (452)
.|+|.||..||.+||.. +..||+||++....+.
T Consensus 53 ~CnHaFH~HCI~rWL~T----k~~CPld~q~w~~~~~ 85 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT----KGVCPLDRQTWVLADG 85 (88)
T ss_pred ecchHHHHHHHHHHHhh----CCCCCCCCceeEEecc
Confidence 79999999999999998 6899999998876543
No 28
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.3e-07 Score=73.47 Aligned_cols=50 Identities=34% Similarity=0.828 Sum_probs=39.2
Q ss_pred ccccccccchhhh------------hhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAK------------AKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~------------~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
+++|.||+-.|+. |..+ -|.|.||..||.+|+....+ +..||+||+....
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTS-QGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccc-cccCCcchheeEe
Confidence 4589999988863 1222 79999999999999987644 5899999997653
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2e-07 Score=96.49 Aligned_cols=54 Identities=28% Similarity=0.669 Sum_probs=45.1
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhc-ccccccCCCCCCccccccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVGRR 253 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~~~~~~~ 253 (452)
+..||||++....++.+.|||+||..||-+.+... ......||+||..+..++.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 67899999999999999999999999998876553 2335799999999887543
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.29 E-value=2.7e-07 Score=65.59 Aligned_cols=41 Identities=34% Similarity=0.844 Sum_probs=34.2
Q ss_pred ccccccchhh---hhhhcccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 202 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 202 ~C~ICl~~~~---~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
.|+||++.+. .+..++|||+||..|+.++... ...||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~----~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK----SVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC----CCCCcCCCC
Confidence 4999999993 3456799999999999998833 589999985
No 31
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=98.20 E-value=4.6e-07 Score=64.04 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCChhhHHhhhh-cccceeeeecccccC
Q 012963 414 LAMAETVREVLPHMPEDLIFQDLQ-RTNSATITVNNLLQM 452 (452)
Q Consensus 414 ~~~~~~v~~~~p~~p~~~~~~~~~-~~~~~~~t~~~~l~~ 452 (452)
..+++++++|||+++...|.++|. .+|+||.||++||++
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 468999999999999999999999 799999999999985
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.18 E-value=4.9e-07 Score=88.88 Aligned_cols=47 Identities=30% Similarity=0.606 Sum_probs=43.3
Q ss_pred ccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 202 ECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
.|.||.|.|..+..+||+|.||.-||+..|.. +..||.|+.++.+..
T Consensus 25 RC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~----~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITPCSHTFCSLCIRKFLSY----KPQCPTCCVTVTESD 71 (442)
T ss_pred HHhHHHHHhcCceeccccchHHHHHHHHHhcc----CCCCCceecccchhh
Confidence 79999999999999999999999999999988 689999999886543
No 33
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=98.16 E-value=4.6e-07 Score=63.75 Aligned_cols=38 Identities=21% Similarity=0.465 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCChhhHHhhh-hcccceeeeecccccC
Q 012963 415 AMAETVREVLPHMPEDLIFQDL-QRTNSATITVNNLLQM 452 (452)
Q Consensus 415 ~~~~~v~~~~p~~p~~~~~~~~-~~~~~~~~t~~~~l~~ 452 (452)
.|++++++|||+++.+.|.++| ...|+||.||++||++
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5899999999999999999999 5588999999999974
No 34
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.6e-06 Score=71.30 Aligned_cols=47 Identities=36% Similarity=0.817 Sum_probs=37.2
Q ss_pred cccccccchhhhh---------------hh--cccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 201 DECAICREPMAKA---------------KK--LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 201 ~~C~ICl~~~~~~---------------~~--l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
+.|+||+..+-+. .. -.|+|.||..||.+|+++ +..||+|.++...+
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt----r~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT----RNVCPLDNKEWVFQ 110 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh----cCcCCCcCcceeEe
Confidence 6899998776321 11 279999999999999999 69999998876544
No 35
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.06 E-value=1.3e-06 Score=69.09 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=38.9
Q ss_pred cccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 201 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
..|+||.+-|.+|+.++|||.|.+.||.+|+.+. +.+||.|+.++...
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~---~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQN---GGTDPFTRQPLSES 52 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT---SSB-TTT-SB-SGG
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC---CCCCCCCCCcCCcc
Confidence 4799999999999999999999999999999984 58999999988654
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.03 E-value=1.6e-06 Score=83.72 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=42.8
Q ss_pred cccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 201 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
..|-||-+.+..+..++|||.||.-||+..|.. +..||+||.+....
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~----qp~CP~Cr~~~~es 72 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT----QPFCPVCREDPCES 72 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcC----CCCCccccccHHhh
Confidence 479999999999999999999999999999988 79999999976543
No 37
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.95 E-value=1.4e-05 Score=80.19 Aligned_cols=48 Identities=33% Similarity=0.676 Sum_probs=40.6
Q ss_pred cccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 201 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
..|-||-|.=++.+.=||||..|..|+..|-.... .++||.||..+..
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~--gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDE--GQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCC--CCCCCceeeEecc
Confidence 46999999877777779999999999999986532 5899999998864
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=5e-06 Score=81.26 Aligned_cols=44 Identities=36% Similarity=0.682 Sum_probs=39.1
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
..-.|+||++.|..++.++|+|.||..|+..+... ...||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~----~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWEG----PLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcCC----CcCCcccCC
Confidence 44589999999999988899999999999998872 589999993
No 39
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=6.4e-06 Score=80.26 Aligned_cols=49 Identities=27% Similarity=0.575 Sum_probs=41.4
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
...+|+||+....-++.++|+|.||..||+.=...+ ..+|++||.++..
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd---k~~CavCR~pids 54 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKND---KKTCAVCRFPIDS 54 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcC---CCCCceecCCCCc
Confidence 346899999999999999999999999997654443 4789999999864
No 40
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.6e-05 Score=58.01 Aligned_cols=46 Identities=33% Similarity=0.625 Sum_probs=37.6
Q ss_pred ccccccccchhhhhhhcccchh-hHHHHHH-HHHhhcccccccCCCCCCccc
Q 012963 200 DDECAICREPMAKAKKLLCNHL-FHLACLR-SWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~-Fh~~Cl~-~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
+++|.||+|.-.+.+.-.|||. .|..|-. .|-.. +..||+||+++.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~----~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL----HGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc----CCcCcchhhHHH
Confidence 4789999999888888899997 7888854 44433 689999999874
No 41
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.72 E-value=1.6e-05 Score=87.11 Aligned_cols=47 Identities=32% Similarity=0.829 Sum_probs=37.9
Q ss_pred cccccccchhhhh-hh------cccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 201 DECAICREPMAKA-KK------LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 201 ~~C~ICl~~~~~~-~~------l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.+|+||+.-+... ++ -.|.|-||..|+.+|+.... +.+||+||..+.
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC--CCCCCccccccc
Confidence 6899999887632 22 26999999999999998754 689999998764
No 42
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=1.6e-05 Score=78.86 Aligned_cols=50 Identities=28% Similarity=0.672 Sum_probs=37.0
Q ss_pred ccccccccchh-hhh-hh-c--ccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 200 DDECAICREPM-AKA-KK-L--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 200 ~~~C~ICl~~~-~~~-~~-l--~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
+..||+|...- ..+ .+ + +|||.||.+|+...+..+ ...||.|+..+...+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~---~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---SGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC---CCCCCCCCCccchhh
Confidence 35799999853 222 11 2 799999999999966543 468999999887654
No 43
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.69 E-value=8.8e-06 Score=63.79 Aligned_cols=50 Identities=30% Similarity=0.596 Sum_probs=25.5
Q ss_pred cccccccchhh-h---hhh----cccchhhHHHHHHHHHhhcc-------cccccCCCCCCcccc
Q 012963 201 DECAICREPMA-K---AKK----LLCNHLFHLACLRSWLDQGL-------NEMYSCPTCRKPLFV 250 (452)
Q Consensus 201 ~~C~ICl~~~~-~---~~~----l~C~H~Fh~~Cl~~Wl~~~~-------~~~~~CP~CR~~~~~ 250 (452)
.+|.||++... . +.. -.|++.||..||.+|+.... +-...||.|+.++..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 47999998765 2 221 27999999999999997542 113469999998754
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=2.8e-05 Score=84.44 Aligned_cols=49 Identities=20% Similarity=0.560 Sum_probs=43.6
Q ss_pred cccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 201 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
-.|++|-..+.+.+.+.|+|+||..|+..-+... +..||.|-..+...+
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR---qRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR---QRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh---cCCCCCCCCCCCccc
Confidence 4799999999999999999999999999999775 789999998876543
No 45
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=2.3e-05 Score=78.31 Aligned_cols=49 Identities=33% Similarity=0.661 Sum_probs=41.6
Q ss_pred ccccccccccchhhhhhhcccchh-hHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 198 AYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
+...+|.||+.+-.+...|||.|. .|..|-+...-+ +..||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q----~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ----TNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh----hcCCCccccchHh
Confidence 346799999999999999999998 888998776544 5799999998854
No 46
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.58 E-value=3.9e-05 Score=55.79 Aligned_cols=42 Identities=24% Similarity=0.694 Sum_probs=31.7
Q ss_pred ccccccchh--hhhhhcccc-----hhhHHHHHHHHHhhcccccccCCCCC
Q 012963 202 ECAICREPM--AKAKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCR 245 (452)
Q Consensus 202 ~C~ICl~~~--~~~~~l~C~-----H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 245 (452)
.|-||++.. +++...||. |.+|..||.+|+.... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 489999822 234456885 8999999999997642 35899995
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3e-05 Score=77.17 Aligned_cols=50 Identities=34% Similarity=0.646 Sum_probs=42.2
Q ss_pred cccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+-.|+||++-++....+ .|.|.||.+||..=+... +..||.||+.+..+
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~g---n~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSG---NNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc---CCCCchHHhhcccc
Confidence 345899999999888766 599999999998877765 68999999988654
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.57 E-value=1.3e-05 Score=60.82 Aligned_cols=45 Identities=29% Similarity=0.837 Sum_probs=24.9
Q ss_pred ccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 202 ECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
.|++|.+.+++|+.+ .|.|+||..|+..-+. ..||+|+.+...++
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~------~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHIFCSSCIRDCIG------SECPVCHTPAWIQD 54 (65)
T ss_dssp S-SSS-S--SS-B---SSS--B-TTTGGGGTT------TB-SSS--B-S-SS
T ss_pred CCcHHHHHhcCCceeccCccHHHHHHhHHhcC------CCCCCcCChHHHHH
Confidence 799999999999764 8999999999977554 46999999876654
No 49
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=97.48 E-value=0.00059 Score=71.86 Aligned_cols=89 Identities=17% Similarity=0.288 Sum_probs=69.4
Q ss_pred hhhHhHHHhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhc-cchhhHHHHHHHHHhhhh
Q 012963 3 QALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFE-PLSVAFETMQAILVHGFQ 81 (452)
Q Consensus 3 h~L~~dR~e~l~~sp~~~~~~h~R~~~lL~~ll~~d~~~i~~~~~~~~~~g~s~~ll~~fe-~~~l~~~~l~~ll~y~~~ 81 (452)
|-+.+..+-.|.+|.+.+.++|+|.+++.++++++++++ .|.+...+..+++++...- |+...+.++.++++|+++
T Consensus 360 ~ei~~pvLmsL~As~~~s~~rH~R~L~v~~~Ll~~P~~~---~y~l~~~~~i~tWll~v~s~~~~t~vkv~~sl~iY~Lf 436 (508)
T PF13705_consen 360 HEIVDPVLMSLSASHNRSFWRHFRALSVCLFLLVFPLYL---SYYLWSFFPIDTWLLIVTSFCVETIVKVLGSLAIYILF 436 (508)
T ss_pred HHHhHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999999999999999999885 4555666777777654433 444567889999999999
Q ss_pred hhhHhhhccCCCC
Q 012963 82 LLDIWLHHSAGNS 94 (452)
Q Consensus 82 l~~~~~~~~~~~~ 94 (452)
++|.+....|++-
T Consensus 437 ~vd~~~~~~WE~L 449 (508)
T PF13705_consen 437 MVDARREEPWEKL 449 (508)
T ss_pred HHHhhcccchhhc
Confidence 9999776555543
No 50
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=6.9e-05 Score=75.29 Aligned_cols=47 Identities=32% Similarity=0.885 Sum_probs=34.2
Q ss_pred cccccccchhhhhhh---c-ccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 201 DECAICREPMAKAKK---L-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~---l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
..|.||-+-+..... + .|||+||..|+.+|+..... ...||.||-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps-~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPS-NRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCc-cCCCCceeecc
Confidence 479999444433222 2 59999999999999987542 36999999433
No 51
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.31 E-value=0.00013 Score=78.72 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=38.1
Q ss_pred cccccccchhhhh---hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 201 DECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 201 ~~C~ICl~~~~~~---~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
..|++|+..+.+. ...+|+|.||..|+..|... .++||+||..+....
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~----aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC----AQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh----cccCchhhhhhheee
Confidence 3577777776654 24589999999999999998 589999999876543
No 52
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00018 Score=72.79 Aligned_cols=54 Identities=35% Similarity=0.720 Sum_probs=40.4
Q ss_pred cccccccccchhhhhh-----h---cccchhhHHHHHHHHHhhcc---cccccCCCCCCcccccc
Q 012963 199 YDDECAICREPMAKAK-----K---LLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~-----~---l~C~H~Fh~~Cl~~Wl~~~~---~~~~~CP~CR~~~~~~~ 252 (452)
.+.+|.||++...+.. . .+|.|.||..|++.|-+... .-.+.||.||.......
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 4568999999876543 2 46999999999999985431 11479999999765443
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00024 Score=73.34 Aligned_cols=49 Identities=35% Similarity=0.686 Sum_probs=43.6
Q ss_pred ccccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 198 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
..+..|.||+..+..++.+||||.||..||.+-+.+ ...||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~----~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ----ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc----CCCCccccccccc
Confidence 456689999999999999999999999999887776 6899999998875
No 54
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00045 Score=64.78 Aligned_cols=54 Identities=33% Similarity=0.853 Sum_probs=44.2
Q ss_pred ccccccccccchhhh--hhhcccchhhHHHHHHHHHhhc----ccccccCCCCCCccccc
Q 012963 198 AYDDECAICREPMAK--AKKLLCNHLFHLACLRSWLDQG----LNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~--~~~l~C~H~Fh~~Cl~~Wl~~~----~~~~~~CP~CR~~~~~~ 251 (452)
+++..|..|-..+.. ..+|.|-|+||+.|+.+|..+- .+....||.|..++++.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 466789999998875 4678999999999999997652 34468999999998863
No 55
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.92 E-value=0.00044 Score=67.50 Aligned_cols=52 Identities=29% Similarity=0.693 Sum_probs=39.9
Q ss_pred ccccccccchhhhh---hhcccchhhHHHHHHHHHhhc-------------------ccccccCCCCCCccccc
Q 012963 200 DDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQG-------------------LNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~~~~~~---~~l~C~H~Fh~~Cl~~Wl~~~-------------------~~~~~~CP~CR~~~~~~ 251 (452)
...|.||+..|.+. .+++|.|.||..|+...+..- ......||+||..+...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 45899999999865 467999999999998775421 12245799999998754
No 56
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0071 Score=58.69 Aligned_cols=51 Identities=24% Similarity=0.618 Sum_probs=40.0
Q ss_pred hccccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 197 RAYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 197 ~~~~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
...+.+|++|-+.-..|-.. +|+|+||.-|+..=+..+. ..+||.|-.++.
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA--SFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh--hcccCccCCCCc
Confidence 35678999999988777554 7999999999987554321 479999988765
No 57
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.84 E-value=0.00085 Score=69.94 Aligned_cols=53 Identities=25% Similarity=0.646 Sum_probs=44.1
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhc-ccccccCCCCCCcccccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~~~~~~ 252 (452)
+-+|.+|-++-++.....|.|.||+.|+.+....- ...+.+||+|...+..+.
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 34799999999999999999999999999887653 123689999998887653
No 58
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00041 Score=70.38 Aligned_cols=48 Identities=31% Similarity=0.797 Sum_probs=39.0
Q ss_pred cccccccccchhhhh-----hhcccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 199 YDDECAICREPMAKA-----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~-----~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
...+|+||++.+..+ +.+.|||.|-.+||++|+.+. ....||.|...-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~--~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKK--TKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhh--hhhhCcccCChh
Confidence 356899999998764 456899999999999999643 258999997753
No 59
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.68 E-value=0.00074 Score=62.22 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=38.4
Q ss_pred cccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCc
Q 012963 201 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 247 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 247 (452)
..|.||.++++.|+.+.|||.||..|...-.+. ...|-+|-+.
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k----g~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK----GDECGVCGKA 239 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc----CCcceecchh
Confidence 479999999999999999999999998777776 5899999764
No 60
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.56 E-value=0.0017 Score=65.49 Aligned_cols=46 Identities=39% Similarity=0.874 Sum_probs=37.1
Q ss_pred ccccccccchhhh----hhhcccchhhHHHHHHHHHhhcccccccCCCCCCc
Q 012963 200 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 247 (452)
Q Consensus 200 ~~~C~ICl~~~~~----~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 247 (452)
+--|..|-|.+.. -..|||.|+||..|+.+.+.++. ..+||.||+-
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~Crkl 414 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG--TRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC--CCCCccHHHH
Confidence 4579999988753 24579999999999999997754 4799999943
No 61
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.00036 Score=69.97 Aligned_cols=45 Identities=24% Similarity=0.577 Sum_probs=34.7
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
..+.|.||+++..+.+.+||||.-| |..--.. ..+||+||+.+..
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~-----l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH-----LPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhh-----CCCCchhHHHHHH
Confidence 4578999999999999999999854 5543333 3579999997743
No 62
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.30 E-value=0.0011 Score=68.91 Aligned_cols=50 Identities=28% Similarity=0.580 Sum_probs=43.5
Q ss_pred ccccccccccchhhhhhh-cccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 198 AYDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~-l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
..+..|++|...+.++.. +.|||.||..|+.+|+.. +..||.|+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~----~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN----HQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhcc----CcCCcccccccchh
Confidence 345689999999999988 599999999999999998 68999998877543
No 63
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.24 E-value=0.0019 Score=64.22 Aligned_cols=48 Identities=25% Similarity=0.612 Sum_probs=41.1
Q ss_pred ccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 200 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
-.+|.+|-..|.++.++ -|-|.||++||.+.+.. ...||+|...+-..
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~----~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE----SKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH----hccCCccceeccCc
Confidence 35899999999887655 69999999999999988 68999998877543
No 64
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.0032 Score=69.25 Aligned_cols=40 Identities=30% Similarity=0.816 Sum_probs=33.6
Q ss_pred cccccccchhhhhh-hcccchhhHHHHHHHHHhhcccccccCCCCCCc
Q 012963 201 DECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 247 (452)
Q Consensus 201 ~~C~ICl~~~~~~~-~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 247 (452)
..|..|-..++-|. ...|||.||..|+. +. ...||.|+..
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~----~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE---DK----EDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc---cC----cccCCccchh
Confidence 48999999998874 56999999999997 33 5899999883
No 65
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.19 E-value=0.0011 Score=49.67 Aligned_cols=43 Identities=21% Similarity=0.517 Sum_probs=29.9
Q ss_pred cccccccccchhhhhhh-cccchhhHHHHHHHHHhhcccccccCCC
Q 012963 199 YDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPT 243 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~-l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~ 243 (452)
.+..|||.+..|++|++ ..|+|+|-++.|.+|++++ ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 34689999999999976 4899999999999999432 2689998
No 66
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0037 Score=62.39 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=42.9
Q ss_pred ccccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 198 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+|+.|+||...--..+..||+|.=|+.||.+-+.+ .+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN----~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN----CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc----CCeeeEecceeee
Confidence 356799999988777888899999999999999887 6899999998764
No 67
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0022 Score=62.75 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=40.0
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
...|-||...|..++++.|+|.||..|-.+-+++ ...|++|-+..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk----~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK----GEKCYVCSQQT 285 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc----CCcceeccccc
Confidence 3569999999999999999999999998887877 58999997754
No 68
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.61 E-value=0.01 Score=58.01 Aligned_cols=47 Identities=28% Similarity=0.688 Sum_probs=36.9
Q ss_pred cccccccchhhhhhhcc-cchhhHHHHHHHHHhhcccccccCCCC-CCcccc
Q 012963 201 DECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTC-RKPLFV 250 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~C-R~~~~~ 250 (452)
-.|+.|..-+..+.++| |+|.||.+||..-|... ...||.| |+++..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds---Df~CpnC~rkdvll 323 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS---DFKCPNCSRKDVLL 323 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc---cccCCCcccccchh
Confidence 47999999999998885 88999999998655332 5899999 445443
No 69
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.51 E-value=0.0064 Score=69.72 Aligned_cols=53 Identities=36% Similarity=0.706 Sum_probs=41.1
Q ss_pred ccccccccccchhh---hhhhcccchhhHHHHHHHHHhhccc------ccccCCCCCCcccc
Q 012963 198 AYDDECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLN------EMYSCPTCRKPLFV 250 (452)
Q Consensus 198 ~~~~~C~ICl~~~~---~~~~l~C~H~Fh~~Cl~~Wl~~~~~------~~~~CP~CR~~~~~ 250 (452)
+.|+.|.||+.+-- .++.|.|+|.||..|.+.-|++... .-.+||+|+.++..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 45789999987653 3578999999999999888776511 13589999998865
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.29 E-value=0.0094 Score=49.93 Aligned_cols=30 Identities=23% Similarity=0.882 Sum_probs=24.7
Q ss_pred cccccccccchhhhhh--hcccchhhHHHHHH
Q 012963 199 YDDECAICREPMAKAK--KLLCNHLFHLACLR 228 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~--~l~C~H~Fh~~Cl~ 228 (452)
.+..|++|...+.... ..||||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4568999999997653 45999999999975
No 71
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.025 Score=57.91 Aligned_cols=53 Identities=26% Similarity=0.498 Sum_probs=38.1
Q ss_pred HHhhccccccccccchhhh---hhhcccchhhHHHHHHHHHhhc----ccccccCCCCCC
Q 012963 194 EELRAYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQG----LNEMYSCPTCRK 246 (452)
Q Consensus 194 ~~l~~~~~~C~ICl~~~~~---~~~l~C~H~Fh~~Cl~~Wl~~~----~~~~~~CP~CR~ 246 (452)
+........|.||++...- -+.+||+|+||+.|+....... ......||-|..
T Consensus 178 ~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 178 EKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3444556789999998754 3678999999999999987543 222457776654
No 72
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.75 E-value=0.017 Score=51.83 Aligned_cols=51 Identities=27% Similarity=0.668 Sum_probs=38.8
Q ss_pred ccccccccccchhhhhhhcccch-----hhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 198 AYDDECAICREPMAKAKKLLCNH-----LFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H-----~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
..+..|-||.++-.+ ..-||.- .-|.+|+..|+.... ...|+.|+.+....
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~--~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSK--NKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCC--CCcccccCCeEEEE
Confidence 456789999988543 3347663 569999999998753 57999999987654
No 73
>PHA02862 5L protein; Provisional
Probab=94.69 E-value=0.021 Score=50.42 Aligned_cols=49 Identities=20% Similarity=0.684 Sum_probs=37.6
Q ss_pred ccccccccchhhhhhhcccc-----hhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 200 DDECAICREPMAKAKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~-----H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
++.|=||+++-++. .-||. ..-|.+||.+|+... ....||.|+.+...+
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S--~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYS--KKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcC--CCcCccCCCCeEEEE
Confidence 46899999986443 45775 468999999999653 368999999987643
No 74
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.68 E-value=0.019 Score=63.34 Aligned_cols=54 Identities=31% Similarity=0.821 Sum_probs=39.1
Q ss_pred HHhhccccccccccchhhhhh-hc---ccchhhHHHHHHHHHhhc---ccccccCCCCCCc
Q 012963 194 EELRAYDDECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQG---LNEMYSCPTCRKP 247 (452)
Q Consensus 194 ~~l~~~~~~C~ICl~~~~~~~-~l---~C~H~Fh~~Cl~~Wl~~~---~~~~~~CP~CR~~ 247 (452)
+++.....+|.||.+.+.... .+ .|-|+||..||++|..+. ....-.||.|+..
T Consensus 185 ~~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 185 EQLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred HHHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 344455679999999987532 22 588999999999998653 1235689999843
No 75
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=94.54 E-value=0.011 Score=42.08 Aligned_cols=38 Identities=34% Similarity=0.531 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCChhhHHhhhhccc-ceeeeecccccC
Q 012963 415 AMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQM 452 (452)
Q Consensus 415 ~~~~~v~~~~p~~p~~~~~~~~~~~~-~~~~t~~~~l~~ 452 (452)
.++.|++.|++.-+.++|++.|+||+ .|...+||||-|
T Consensus 11 dlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T PF11547_consen 11 DLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcc
Confidence 38899999999999999999999987 688889998853
No 76
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.07 Score=53.17 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=38.9
Q ss_pred ccccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 198 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.....|++|+..-.++..+ .-|-+||..|+-+.+.+ ...||+--.+..
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~----~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN----YGHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh----cCCCCccCCcch
Confidence 3457899999988877666 45999999999999987 789998766543
No 77
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.0045 Score=60.42 Aligned_cols=43 Identities=30% Similarity=0.649 Sum_probs=34.6
Q ss_pred ccccccccchhhhhhhcccchh-hHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
+..|.||++.-.+++.|+|||. -|.+|-.. -..||+||+.+..
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr--------m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR--------MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc--------cccCchHHHHHHH
Confidence 5679999999999999999996 56677532 3589999997653
No 78
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.16 E-value=0.014 Score=43.12 Aligned_cols=46 Identities=26% Similarity=0.521 Sum_probs=36.0
Q ss_pred cccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 201 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
..|..|...-.....+||+|..+..|..-+-. .-||.|-+++...+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY------ngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGERY------NGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccccccccccceeeccccChhhc------cCCCCCCCcccCCC
Confidence 36777877766778899999999999765443 58999999887654
No 79
>PHA03096 p28-like protein; Provisional
Probab=94.04 E-value=0.035 Score=55.19 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=33.6
Q ss_pred cccccccchhhhhh-------hc-ccchhhHHHHHHHHHhhcccccccCCCCCCc
Q 012963 201 DECAICREPMAKAK-------KL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 247 (452)
Q Consensus 201 ~~C~ICl~~~~~~~-------~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 247 (452)
-.|.||++...... .| .|.|.||..|++.|...... ..+||.||..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~-~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLY-KETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhh-cccCccccch
Confidence 57999999875421 23 79999999999999876532 4566666553
No 80
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.00 E-value=0.029 Score=40.42 Aligned_cols=43 Identities=26% Similarity=0.665 Sum_probs=20.6
Q ss_pred cccccchhhhh--hhc--ccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 203 CAICREPMAKA--KKL--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 203 C~ICl~~~~~~--~~l--~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
|++|.++++.. ... +|++..|..|...-+... ...||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~---~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE---GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS----SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc---CCCCCCCCCCC
Confidence 78999999543 223 688888888977766532 58999999863
No 81
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.47 E-value=0.061 Score=55.02 Aligned_cols=33 Identities=30% Similarity=0.929 Sum_probs=25.5
Q ss_pred cchhhHHHHHHHHHhhc---------ccccccCCCCCCcccc
Q 012963 218 CNHLFHLACLRSWLDQG---------LNEMYSCPTCRKPLFV 250 (452)
Q Consensus 218 C~H~Fh~~Cl~~Wl~~~---------~~~~~~CP~CR~~~~~ 250 (452)
|...+|.+|+-+|+..+ ..++.+||+||+.+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 45778999999998654 1236799999998764
No 82
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.29 E-value=0.035 Score=48.67 Aligned_cols=32 Identities=22% Similarity=0.551 Sum_probs=25.9
Q ss_pred cccccccchhhh--hh-hcccc------hhhHHHHHHHHHh
Q 012963 201 DECAICREPMAK--AK-KLLCN------HLFHLACLRSWLD 232 (452)
Q Consensus 201 ~~C~ICl~~~~~--~~-~l~C~------H~Fh~~Cl~~Wl~ 232 (452)
-+|.||++...+ ++ .++|+ |.||.+|+.+|-+
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 479999999987 43 35676 9999999999953
No 83
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.16 E-value=0.048 Score=54.57 Aligned_cols=54 Identities=22% Similarity=0.485 Sum_probs=40.5
Q ss_pred ChHHhhccccccccccchhhhhhhcccchhhHHHHHHHH--HhhcccccccCCCCCCccc
Q 012963 192 TSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSW--LDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 192 ~~~~l~~~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~W--l~~~~~~~~~CP~CR~~~~ 249 (452)
+.++-.+.+..|.||-+...-...+||+|..|-.|-..- |.. .+.||.||....
T Consensus 53 SaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~----~K~C~~CrTE~e 108 (493)
T COG5236 53 SADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM----QKGCPLCRTETE 108 (493)
T ss_pred cccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh----ccCCCccccccc
Confidence 344444566789999999887788999999999995332 333 589999998753
No 84
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.16 E-value=0.16 Score=45.78 Aligned_cols=75 Identities=23% Similarity=0.385 Sum_probs=47.4
Q ss_pred ccccccccchhhhhhhccc------------ch-hhHHHHHHHHHhhcc---------------------------cccc
Q 012963 200 DDECAICREPMAKAKKLLC------------NH-LFHLACLRSWLDQGL---------------------------NEMY 239 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C------------~H-~Fh~~Cl~~Wl~~~~---------------------------~~~~ 239 (452)
+.+|+||+|.-.+.+.|.| +- .-|..||++..+... ....
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 4589999999888776654 31 247889998865430 0146
Q ss_pred cCCCCCCcccc------------cccCcccCCCCcccCchHHHHHHH
Q 012963 240 SCPTCRKPLFV------------GRREIEANSRPGEVSSDEQLARQL 274 (452)
Q Consensus 240 ~CP~CR~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 274 (452)
.||+||..|.. .++.......|.-.++-.++..+.
T Consensus 82 ~CPLCRG~V~GWtvve~AR~~LN~K~RsC~~e~C~F~GtY~eLrKHa 128 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVEPARRFLNAKKRSCSQESCSFSGTYSELRKHA 128 (162)
T ss_pred cCccccCceeceEEchHHHHHhccCCccCcccccccccCHHHHHHHH
Confidence 89999999853 122333344455556666665544
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.14 E-value=0.049 Score=54.29 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=34.5
Q ss_pred cccccccccchhhhhhh----cccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~----l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
+++-|+.|+|+|+...+ -|||-..|.-|...--+. .+..||-||+.....
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~---lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN---LNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh---ccCCChHhhhhcccc
Confidence 45569999999986533 378877777775443322 257999999976543
No 86
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.13 E-value=0.02 Score=41.21 Aligned_cols=40 Identities=28% Similarity=0.711 Sum_probs=26.5
Q ss_pred cccccchhhhhh--hcccc-----hhhHHHHHHHHHhhcccccccCCCC
Q 012963 203 CAICREPMAKAK--KLLCN-----HLFHLACLRSWLDQGLNEMYSCPTC 244 (452)
Q Consensus 203 C~ICl~~~~~~~--~l~C~-----H~Fh~~Cl~~Wl~~~~~~~~~CP~C 244 (452)
|-||++.-.+.. ..||+ -.-|..||.+|+.... ..+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 678888766533 44775 3579999999998632 4689988
No 87
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=0.069 Score=51.16 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=42.2
Q ss_pred cccccccccchhhhhh---hc-ccchhhHHHHHHHHHhhcccccccCCCCCCcccccccC
Q 012963 199 YDDECAICREPMAKAK---KL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 254 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~---~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~~ 254 (452)
....||+|.+.+.+.. .| ||||+|+.+|..+.... ...||+|-.++...+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~----D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK----DMVDPVTDKPLKDRDII 275 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc----cccccCCCCcCcccceE
Confidence 3468999999997642 33 99999999999998887 48999999988765543
No 88
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=0.096 Score=56.96 Aligned_cols=60 Identities=37% Similarity=0.694 Sum_probs=50.7
Q ss_pred hhCCCCChHHhhccccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccccc
Q 012963 186 AALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 253 (452)
Q Consensus 186 ~~l~~~~~~~l~~~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~ 253 (452)
..++.++.+++.+..+.|.+|++.+ ..+..+|. |..|+.+|+.. +..||.|+..+..++.
T Consensus 465 ~~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~----~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 465 NSLSEATPSQLREPNDVCAICYQEM-SARITPCS---HALCLRKWLYV----QEVCPLCHTYMKEDDF 524 (543)
T ss_pred CCCCCCChhhhhcccCcchHHHHHH-Hhcccccc---chhHHHhhhhh----ccccCCCchhhhcccc
Confidence 4567778888888899999999999 66677898 89999999998 5899999998876543
No 89
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.06 Score=53.75 Aligned_cols=45 Identities=31% Similarity=0.704 Sum_probs=38.3
Q ss_pred cccccccchhhh------hhhcccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 201 DECAICREPMAK------AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 201 ~~C~ICl~~~~~------~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
..|-||-+++.. |+.|.|||.||..|+.+-+... ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~---~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS---RILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc---eeeccCCCCcc
Confidence 479999999964 5678899999999998877764 67899999985
No 90
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.044 Score=55.64 Aligned_cols=47 Identities=28% Similarity=0.673 Sum_probs=40.5
Q ss_pred cccccccchhhh----hhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 201 DECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 201 ~~C~ICl~~~~~----~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
..|+||.+.+.. ...+-|||..|..||.+|+.. ...||.||+.+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~----~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT----KRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH----HHHhHHHHhhhhhh
Confidence 479999988864 456799999999999999998 58999999998754
No 91
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.86 E-value=0.039 Score=61.18 Aligned_cols=49 Identities=29% Similarity=0.572 Sum_probs=40.2
Q ss_pred cccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 201 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
..|.+|.+ .+.+..++|+|.||.+|+.+-++... ...||.||..+...+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~--~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE--NAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc--CCCCcHHHHHHHHHH
Confidence 68999999 66677889999999999988776543 348999999886544
No 92
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=0.12 Score=47.17 Aligned_cols=51 Identities=29% Similarity=0.740 Sum_probs=36.3
Q ss_pred cccccccchhhh-------hhhcccchhhHHHHHHHHHhhcccc-------cccCCCCCCccccc
Q 012963 201 DECAICREPMAK-------AKKLLCNHLFHLACLRSWLDQGLNE-------MYSCPTCRKPLFVG 251 (452)
Q Consensus 201 ~~C~ICl~~~~~-------~~~l~C~H~Fh~~Cl~~Wl~~~~~~-------~~~CP~CR~~~~~~ 251 (452)
..|.||+..--+ +.-..||..||.-|+..||+.-... -..||.|..++..+
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 468888765432 2346899999999999999753111 24799999988654
No 93
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.96 E-value=0.64 Score=40.69 Aligned_cols=49 Identities=29% Similarity=0.592 Sum_probs=37.9
Q ss_pred cccccccchhhhhhhc----ccchhhHHHHHHH-HHhhcccccccCCCCCCccccc
Q 012963 201 DECAICREPMAKAKKL----LCNHLFHLACLRS-WLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l----~C~H~Fh~~Cl~~-Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+|.||.|...+...| -||-..|..|-.. |---. ....||+|+.++...
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~--~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN--LYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc--cCCCCCccccccccc
Confidence 4899999998887666 4999999999765 54332 268999999987643
No 94
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=0.15 Score=55.01 Aligned_cols=39 Identities=26% Similarity=0.599 Sum_probs=31.6
Q ss_pred ccccccchhhh----hhhcccchhhHHHHHHHHHhhcccccccCCCCCCc
Q 012963 202 ECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 247 (452)
Q Consensus 202 ~C~ICl~~~~~----~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 247 (452)
.|.||+..|.. ++.+-|||..|..|+..-.. .+|| |+.+
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn------~scp-~~~D 55 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN------ASCP-TKRD 55 (861)
T ss_pred hchHHHHHHHHHhcCcccccccchHHHHHHHhHhh------ccCC-CCcc
Confidence 69999988864 56789999999999977554 5899 7654
No 95
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.41 E-value=0.14 Score=50.51 Aligned_cols=42 Identities=36% Similarity=0.815 Sum_probs=36.0
Q ss_pred cccccccchhhh----hhhcccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 201 DECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 201 ~~C~ICl~~~~~----~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
..||||.+.+-. +..++|||.-|..|+.+.... +.+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~----~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE----GYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhcc----CCCCCcccc
Confidence 459999998754 567899999999999998877 589999988
No 96
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.85 E-value=0.32 Score=54.44 Aligned_cols=34 Identities=29% Similarity=0.608 Sum_probs=26.8
Q ss_pred cccccccccchhhhh--hhcccchhhHHHHHHHHHh
Q 012963 199 YDDECAICREPMAKA--KKLLCNHLFHLACLRSWLD 232 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~--~~l~C~H~Fh~~Cl~~Wl~ 232 (452)
.++.|.+|...+-.. ..-||||.||++|+.+-..
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 467999998887543 4569999999999976543
No 97
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.78 E-value=0.12 Score=49.70 Aligned_cols=44 Identities=25% Similarity=0.533 Sum_probs=29.6
Q ss_pred ccccccchhh-hh-hhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 202 ECAICREPMA-KA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 202 ~C~ICl~~~~-~~-~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.|..|...-. ++ ..+.|.|+||..|...=. ...||.||+++...
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~------~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS------PDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC------ccccccccceeeee
Confidence 4776755433 12 245899999999974421 24999999997543
No 98
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=0.15 Score=50.49 Aligned_cols=42 Identities=36% Similarity=0.775 Sum_probs=29.6
Q ss_pred ccccccchhhh-hhhcccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 202 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 202 ~C~ICl~~~~~-~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.|--|--.+.. .+.+||.|+||.+|-+. +. .+.||.|-..+.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~----dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS--DS----DKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc--Cc----cccCcCcccHHH
Confidence 57667544433 45679999999999754 22 369999977664
No 99
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.61 E-value=0.33 Score=47.73 Aligned_cols=35 Identities=29% Similarity=0.627 Sum_probs=26.8
Q ss_pred ccchhhHHHHHHHHHhhc---------ccccccCCCCCCccccc
Q 012963 217 LCNHLFHLACLRSWLDQG---------LNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 217 ~C~H~Fh~~Cl~~Wl~~~---------~~~~~~CP~CR~~~~~~ 251 (452)
-|...+|.+|+.+|+... ..++.+||+||+.+...
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 466889999999997543 22367999999998754
No 100
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.42 E-value=0.26 Score=57.19 Aligned_cols=44 Identities=25% Similarity=0.506 Sum_probs=38.2
Q ss_pred cccccccchhhh-hhhcccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 201 DECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 201 ~~C~ICl~~~~~-~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
..|.||++.+.. +-...|||.+|..|...|+.. +..||.|+...
T Consensus 1154 ~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~----~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA----SSRCPICKSIK 1198 (1394)
T ss_pred cchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH----hccCcchhhhh
Confidence 489999999984 456689999999999999998 79999998644
No 101
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=85.91 E-value=0.38 Score=53.21 Aligned_cols=52 Identities=21% Similarity=0.467 Sum_probs=38.5
Q ss_pred cccccccccchhhhh--hhcccch-----hhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 199 YDDECAICREPMAKA--KKLLCNH-----LFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~--~~l~C~H-----~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
.+..|-||..+-... ..-||.. .-|.+|+.+|+.-.. ...|-+|+.+...++
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~--~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG--TKKCDICHYEYKFKD 69 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC--Ccceeeecceeeeee
Confidence 346899999875443 3347763 489999999998542 579999999886543
No 102
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.71 E-value=0.34 Score=48.59 Aligned_cols=42 Identities=31% Similarity=0.740 Sum_probs=33.0
Q ss_pred cccccccchhhhhhhccc--chhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 201 DECAICREPMAKAKKLLC--NHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C--~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
-+||||.+.+..|. ..| ||.-|..|=.+ . ...||.||.++..
T Consensus 49 leCPvC~~~l~~Pi-~QC~nGHlaCssC~~~---~----~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPI-FQCDNGHLACSSCRTK---V----SNKCPTCRLPIGN 92 (299)
T ss_pred ccCchhhccCcccc-eecCCCcEehhhhhhh---h----cccCCcccccccc
Confidence 38999999998874 456 59999999642 2 4789999999863
No 103
>PF04641 Rtf2: Rtf2 RING-finger
Probab=85.29 E-value=0.39 Score=47.23 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=38.3
Q ss_pred ccccccccccchhhhh---h-hcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 198 AYDDECAICREPMAKA---K-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~---~-~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
.....|||+...|... + ..||||+|...|+.+-- . ...||+|-.++...+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~----~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K----SKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c----cccccccCCccccCC
Confidence 3456899999999542 2 34999999999998874 2 468999999887543
No 104
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=0.51 Score=46.49 Aligned_cols=46 Identities=26% Similarity=0.544 Sum_probs=34.7
Q ss_pred ccccccchhh-hh-hhc---ccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 202 ECAICREPMA-KA-KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 202 ~C~ICl~~~~-~~-~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.|++|..+-- .+ .++ +|+|..|.+|...-+..+ ...||.|-..+-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g---~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG---PAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC---CCCCCcccchhhh
Confidence 5899986542 22 222 999999999999988876 6899999776644
No 105
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.07 E-value=0.63 Score=45.04 Aligned_cols=52 Identities=25% Similarity=0.650 Sum_probs=38.0
Q ss_pred cccccccccchhhhhhh----cccc-----hhhHHHHHHHHHhhcc----cccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKK----LLCN-----HLFHLACLRSWLDQGL----NEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~----l~C~-----H~Fh~~Cl~~Wl~~~~----~~~~~CP~CR~~~~~ 250 (452)
.+..|=||+..=++... -||. |--|..||..|.+.+. .....||-|+.....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 34579999987665432 2774 8899999999997752 235689999987644
No 106
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.89 E-value=0.31 Score=53.54 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=40.3
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
..+|+||.+.+.++..+.|.|.|+..|+..-+..... ...||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~-~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKG-PKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCc-cccchhhhhhhhh
Confidence 3479999999999989999999999998765554322 4799999977653
No 107
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.47 E-value=0.51 Score=48.43 Aligned_cols=45 Identities=22% Similarity=0.539 Sum_probs=35.2
Q ss_pred cccccccchhh---hhhhcccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 201 DECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 201 ~~C~ICl~~~~---~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
..|||=.+.-. +|.+|.|||+..++-+.+.-+.+.. ...||.|=.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~-sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQ-SFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCe-eeeCCCCCc
Confidence 57999777654 3789999999999999987766422 478999944
No 108
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=83.16 E-value=0.46 Score=49.08 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=29.4
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhh
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 233 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~ 233 (452)
+-.|+||-.-|++|+.|||+|..|..|-..-+.+
T Consensus 4 elkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 4 ELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 3479999999999999999999999998765544
No 109
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.32 E-value=0.28 Score=46.67 Aligned_cols=40 Identities=38% Similarity=0.708 Sum_probs=30.2
Q ss_pred ccccccchhhhhhhcccchh-hHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 202 ECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.|-.|.+.-.....+||.|. +|..|=.. -..||+|+....
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~--------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES--------LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc--------CccCCCCcChhh
Confidence 39999888777777899986 66777543 257999988654
No 110
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=81.34 E-value=0.6 Score=32.86 Aligned_cols=40 Identities=25% Similarity=0.742 Sum_probs=20.3
Q ss_pred cccccchhhhhhh---cccchhhHHHHHHHHHhhcccccccCCCC
Q 012963 203 CAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTC 244 (452)
Q Consensus 203 C~ICl~~~~~~~~---l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 244 (452)
|.+|.+-...+.+ -.|+=.+|..|+..++.... ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~--~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS--NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S--S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC--CCCCcCC
Confidence 5566555444332 24777899999999987742 2379988
No 111
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=77.87 E-value=0.62 Score=33.37 Aligned_cols=42 Identities=36% Similarity=0.732 Sum_probs=25.1
Q ss_pred cccccchhhhhhhcccc-hhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 203 CAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 203 C~ICl~~~~~~~~l~C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
|--|+- ++.-.+.|. |..|..|+...+.+ +..||+|.++++.
T Consensus 5 CKsCWf--~~k~Li~C~dHYLCl~CLt~ml~~----s~~C~iC~~~LPt 47 (50)
T PF03854_consen 5 CKSCWF--ANKGLIKCSDHYLCLNCLTLMLSR----SDRCPICGKPLPT 47 (50)
T ss_dssp --SS-S----SSEEE-SS-EEEHHHHHHT-SS----SSEETTTTEE---
T ss_pred Chhhhh--cCCCeeeecchhHHHHHHHHHhcc----ccCCCcccCcCcc
Confidence 445542 233345786 99999999999988 7899999998865
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=77.56 E-value=1.2 Score=42.79 Aligned_cols=47 Identities=30% Similarity=0.663 Sum_probs=34.9
Q ss_pred cccccccccchhh-hh--hhc--c-cchhhHHHHHHHHHhhcccccccCC--CCCCcc
Q 012963 199 YDDECAICREPMA-KA--KKL--L-CNHLFHLACLRSWLDQGLNEMYSCP--TCRKPL 248 (452)
Q Consensus 199 ~~~~C~ICl~~~~-~~--~~l--~-C~H~Fh~~Cl~~Wl~~~~~~~~~CP--~CR~~~ 248 (452)
.+..||+|..+-- .| +.| | |-|..|.+|++.-+..+ ...|| -|-+-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G---pAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG---PAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC---CCCCCCccHHHHH
Confidence 4558999987642 22 222 5 99999999999998886 68999 785533
No 113
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.73 E-value=0.61 Score=42.08 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=22.9
Q ss_pred hhccccccccccchhhhh---hhcccchhhHH
Q 012963 196 LRAYDDECAICREPMAKA---KKLLCNHLFHL 224 (452)
Q Consensus 196 l~~~~~~C~ICl~~~~~~---~~l~C~H~Fh~ 224 (452)
+.+...+|.||+|++... .+|||-.++|+
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 445567999999999865 46899988885
No 114
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.43 E-value=1.7 Score=48.29 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=35.8
Q ss_pred cccccccccchhhhhh----hc---ccchhhHHHHHHHHHhhcc--cccccCCCCCCccc
Q 012963 199 YDDECAICREPMAKAK----KL---LCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLF 249 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~----~l---~C~H~Fh~~Cl~~Wl~~~~--~~~~~CP~CR~~~~ 249 (452)
..++|.+|.-++..++ .. .|+|.||..||..|.++-. ..+..|+.|...+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3467888877776521 23 4999999999999998642 22456788877653
No 115
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=70.73 E-value=2.6 Score=42.08 Aligned_cols=49 Identities=22% Similarity=0.543 Sum_probs=37.4
Q ss_pred ccccccccchhhhh----hhcccc-----hhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKA----KKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~----~~l~C~-----H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
+..|-||.++.... ...||. +..|..|+..|+..+. ...|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~--~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKG--NITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcccc--Ceeeeccccccee
Confidence 46899999977643 455775 6689999999997432 5899999886654
No 116
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=70.72 E-value=2 Score=47.45 Aligned_cols=26 Identities=27% Similarity=0.648 Sum_probs=22.4
Q ss_pred hhcccchhhHHHHHHHHHhhcccccccCCC
Q 012963 214 KKLLCNHLFHLACLRSWLDQGLNEMYSCPT 243 (452)
Q Consensus 214 ~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~ 243 (452)
....|+|+-|.+|..+|+.. ...||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~----gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRT----GDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhc----CCcCCC
Confidence 34689999999999999998 579983
No 117
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=66.39 E-value=1.4 Score=32.09 Aligned_cols=45 Identities=27% Similarity=0.618 Sum_probs=21.8
Q ss_pred ccccccchhhhhhhc-ccchhhHHHHHHHHHhhcc-cccccCCCCCCc
Q 012963 202 ECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGL-NEMYSCPTCRKP 247 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~-~~~~~CP~CR~~ 247 (452)
.|++....+..|.+- .|.|.-|. =+..|++... ...-.||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 699999998887654 79997432 2456765531 123579999763
No 118
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=60.04 E-value=5 Score=37.98 Aligned_cols=42 Identities=24% Similarity=0.681 Sum_probs=33.4
Q ss_pred cccccccchhhhhh-hcccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 201 DECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 201 ~~C~ICl~~~~~~~-~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
..|.+|.+-.-..+ .-.|+=.+|..|+...+++ ...||.|--
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~----~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR----RDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc----cCcCCchhc
Confidence 48999987654443 3378888999999999998 689999944
No 119
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=55.78 E-value=6.8 Score=39.55 Aligned_cols=46 Identities=33% Similarity=0.618 Sum_probs=34.8
Q ss_pred cccccccchhhhhh--hc--ccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 201 DECAICREPMAKAK--KL--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 201 ~~C~ICl~~~~~~~--~l--~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
..|+||.+...... .+ ||++..|..|+..-... +.+||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~----~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG----DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc----CCCCCccCCcccc
Confidence 68999999885432 33 78888888888776666 6899999965543
No 120
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.05 E-value=8.7 Score=40.04 Aligned_cols=35 Identities=29% Similarity=0.640 Sum_probs=25.9
Q ss_pred ccccccccchhhhh----hhcccchhhHHHHHHHHHhhc
Q 012963 200 DDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQG 234 (452)
Q Consensus 200 ~~~C~ICl~~~~~~----~~l~C~H~Fh~~Cl~~Wl~~~ 234 (452)
..+|.||..+.... ....|+|.||.+|..+-+..+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 45899999433322 246899999999999888754
No 122
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.59 E-value=6.1 Score=38.98 Aligned_cols=34 Identities=26% Similarity=0.632 Sum_probs=28.8
Q ss_pred cccccccchhhhhhhccc----chhhHHHHHHHHHhhc
Q 012963 201 DECAICREPMAKAKKLLC----NHLFHLACLRSWLDQG 234 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C----~H~Fh~~Cl~~Wl~~~ 234 (452)
-.|.+|.|.+++.-...| .|-||..|-++-++++
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 469999999999877777 5999999999988764
No 123
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.46 E-value=11 Score=40.09 Aligned_cols=52 Identities=29% Similarity=0.552 Sum_probs=38.0
Q ss_pred cccccccccchhhh-hhhcccchhhHHHHHHHHHhhcccc--c--ccCC--CCCCcccc
Q 012963 199 YDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNE--M--YSCP--TCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~-~~~l~C~H~Fh~~Cl~~Wl~~~~~~--~--~~CP--~CR~~~~~ 250 (452)
...+|.||.+.... ...+.|+|.||..|....+.++... . .+|| -|+..+..
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~ 127 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGE 127 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCC
Confidence 34689999999885 6678999999999999988776221 1 3455 56665543
No 124
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=50.15 E-value=11 Score=44.12 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCChhhHHhhhhccc-ceeeeecccccC
Q 012963 414 LAMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQM 452 (452)
Q Consensus 414 ~~~~~~v~~~~p~~p~~~~~~~~~~~~-~~~~t~~~~l~~ 452 (452)
..++.+++.|+-.-..++|++.|+||| .|...|||+|-|
T Consensus 190 EELInnaQqVLQGKSRdVIIRELQRTgLdVNeAVNNLLSR 229 (3015)
T KOG0943|consen 190 EELINNAQQVLQGKSRDVIIRELQRTGLDVNEAVNNLLSR 229 (3015)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHhCCcHHHHHHhhhcc
Confidence 348889999999999999999999998 788899999864
No 125
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.27 E-value=7.3 Score=37.72 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=29.7
Q ss_pred cccccccchhhhhhhcccchhhHHHHHHHHHhh
Q 012963 201 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 233 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~ 233 (452)
+.|..|+.++.+|+..|=||+|+.+||.+.+..
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 479999999999999999999999999887643
No 126
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=47.56 E-value=11 Score=28.96 Aligned_cols=14 Identities=29% Similarity=0.721 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHhhc
Q 012963 221 LFHLACLRSWLDQG 234 (452)
Q Consensus 221 ~Fh~~Cl~~Wl~~~ 234 (452)
-||+.||.+|+...
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999999864
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.98 E-value=8.8 Score=42.74 Aligned_cols=38 Identities=24% Similarity=0.577 Sum_probs=26.5
Q ss_pred ccccccchhhhhhhc--ccchhhHHHHHHHHHhhcccccccCCC
Q 012963 202 ECAICREPMAKAKKL--LCNHLFHLACLRSWLDQGLNEMYSCPT 243 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l--~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~ 243 (452)
.|.+|-......... -|+|.-|.+|+++|+.. ...||.
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~----~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFK----ASPCAK 820 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhc----CCCCcc
Confidence 466665444332222 69999999999999998 466665
No 128
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.05 E-value=11 Score=42.11 Aligned_cols=35 Identities=26% Similarity=0.588 Sum_probs=26.7
Q ss_pred cccccccccchhh-------hhhhcccchhhHHHHHHHHHhh
Q 012963 199 YDDECAICREPMA-------KAKKLLCNHLFHLACLRSWLDQ 233 (452)
Q Consensus 199 ~~~~C~ICl~~~~-------~~~~l~C~H~Fh~~Cl~~Wl~~ 233 (452)
.+..|.-|.+... ..+.+.|+|.||..|+..-..+
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~ 824 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR 824 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh
Confidence 3457999988764 2356799999999999766554
No 129
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=44.59 E-value=10 Score=41.44 Aligned_cols=25 Identities=36% Similarity=0.858 Sum_probs=18.8
Q ss_pred hcccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 215 KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 215 ~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
...|+++||..|+.. + +..||.|-+
T Consensus 534 C~~C~avfH~~C~~r---~----s~~CPrC~R 558 (580)
T KOG1829|consen 534 CSTCLAVFHKKCLRR---K----SPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHHHhc---c----CCCCCchHH
Confidence 358999999999744 2 345999954
No 130
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=43.96 E-value=11 Score=37.72 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=33.5
Q ss_pred cccccccchhh---hhhhcccchhhHHHHHHHHHhhcccccccCCCCC
Q 012963 201 DECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245 (452)
Q Consensus 201 ~~C~ICl~~~~---~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 245 (452)
..||+-.+.-. .|..+.|||+.-.+-++..-+.+.. ...||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~-~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVL-SFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcE-EeeCCCCC
Confidence 47998666553 3678999999999999886665433 68999993
No 131
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=43.45 E-value=1.7 Score=33.98 Aligned_cols=41 Identities=27% Similarity=0.646 Sum_probs=22.6
Q ss_pred cccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 201 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
..||.|..+++..- +|..|..|-..... ...||-|..++..
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~~-----~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYKK-----EAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEEE-----EEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC----CEEECcccccccee-----cccCCCcccHHHH
Confidence 47999998876543 55555567765444 4799999998753
No 132
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=40.00 E-value=9.9 Score=39.34 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=0.4
Q ss_pred hccccccccccchhhhh--------------hhcccchhhHHHHHHHHHhhcc--cccccCCCCCCccc
Q 012963 197 RAYDDECAICREPMAKA--------------KKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLF 249 (452)
Q Consensus 197 ~~~~~~C~ICl~~~~~~--------------~~l~C~H~Fh~~Cl~~Wl~~~~--~~~~~CP~CR~~~~ 249 (452)
.+....||+=+..+.-+ +-+.|||++-. ..|-.... .....||+||..-+
T Consensus 274 Na~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 274 NAGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp S--------------------------------------------------------------------
T ss_pred hhcCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCccccCC
Confidence 34456788877665321 34699998644 35754332 12579999998643
No 133
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=39.87 E-value=4.2 Score=40.57 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=19.5
Q ss_pred ccccccccchhhhhhhc-----ccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 200 DDECAICREPMAKAKKL-----LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l-----~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
...||||-..-.-.... --.|.+|.-|-.+|-.. ...||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~----R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV----RIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE------TTS-TTT--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec----CCCCcCCCC
Confidence 46899998764321111 12455666799999776 589999954
No 134
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=34.44 E-value=10 Score=24.76 Aligned_cols=34 Identities=35% Similarity=0.867 Sum_probs=22.9
Q ss_pred cccccchhhhh-hhc-ccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 203 CAICREPMAKA-KKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 203 C~ICl~~~~~~-~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
|..|.+.+... ..+ .=+..||..|. .|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~Cf------------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPECF------------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccCC------------CCcccCCcC
Confidence 77777776653 222 34678888884 788887765
No 135
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.72 E-value=23 Score=35.09 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=36.2
Q ss_pred ccccccccchhhh------hhhcc--------cchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 200 DDECAICREPMAK------AKKLL--------CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 200 ~~~C~ICl~~~~~------~~~l~--------C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
+..|.||...+.. +..+. |+|..|..|+..-+.+. ...||.||...
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~---~~~cp~~~~~~ 266 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA---GIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh---hhcCCccccee
Confidence 4579999988872 34445 99999999999988764 36899998753
No 136
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.77 E-value=22 Score=34.71 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=36.2
Q ss_pred ccccccccccchhhhh----hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 198 AYDDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~----~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
.....|+|---+|... ...+|||+|-..-+.+-- ...|++|.+.+...+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik------as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK------ASVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh------hccccccCCcccccC
Confidence 3446799887777654 345999999988887744 369999999876543
No 137
>PF04905 NCD2: NAB conserved region 2 (NCD2); InterPro: IPR006989 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents a NAB domain near the C terminus of the protein. It is necessary for transcriptional repression by the Nab proteins []. It is also required for transcription activation by Nab proteins at Nab-activated promoters [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2YUF_A.
Probab=31.58 E-value=12 Score=33.90 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHcCCCChhh
Q 012963 410 IANILAMAETVREVLPHMPEDL 431 (452)
Q Consensus 410 ~~~~~~~~~~v~~~~p~~p~~~ 431 (452)
..++...++-|.++.+++|..-
T Consensus 37 ~~~v~~l~e~~erl~k~lP~~~ 58 (164)
T PF04905_consen 37 EEQVQKLAECVERLIKTLPRFD 58 (164)
T ss_dssp HHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHhCCCCc
Confidence 3778888888888888877654
No 138
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=31.47 E-value=25 Score=34.60 Aligned_cols=49 Identities=31% Similarity=0.560 Sum_probs=34.4
Q ss_pred cccccccchhhhh-------hhcccchhhHHHHHHHHHhhc-----ccccccCCCCCCccc
Q 012963 201 DECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQG-----LNEMYSCPTCRKPLF 249 (452)
Q Consensus 201 ~~C~ICl~~~~~~-------~~l~C~H~Fh~~Cl~~Wl~~~-----~~~~~~CP~CR~~~~ 249 (452)
..|-+|.+++.+. ..-.|+-.+|..|+..-+... .+-...||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 5899999998432 122588899999998833222 233579999998654
No 139
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.20 E-value=18 Score=22.56 Aligned_cols=8 Identities=25% Similarity=0.862 Sum_probs=4.0
Q ss_pred cccccchh
Q 012963 203 CAICREPM 210 (452)
Q Consensus 203 C~ICl~~~ 210 (452)
||-|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555444
No 140
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=30.57 E-value=16 Score=34.55 Aligned_cols=39 Identities=31% Similarity=0.740 Sum_probs=26.3
Q ss_pred cccccccccch-----hhhhh---hcccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 199 YDDECAICREP-----MAKAK---KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 199 ~~~~C~ICl~~-----~~~~~---~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
.+..|-+|-++ |+... --.|+-+||..|..+ ..||.|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 45678888764 12211 237999999999752 47999954
No 141
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=28.73 E-value=30 Score=34.75 Aligned_cols=51 Identities=24% Similarity=0.479 Sum_probs=34.8
Q ss_pred ccccccccchhhh-----------------h--hhcccchhhHHHHHHHHHhhcccc-----cccCCCCCCcccc
Q 012963 200 DDECAICREPMAK-----------------A--KKLLCNHLFHLACLRSWLDQGLNE-----MYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~-----------------~--~~l~C~H~Fh~~Cl~~Wl~~~~~~-----~~~CP~CR~~~~~ 250 (452)
+.+||+|+..-.- + ..-||||+--..=..-|-+...+. +..||.|-..+..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 5689999976421 1 124999987666777787765332 5689999876643
No 142
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.54 E-value=36 Score=27.89 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHhhc
Q 012963 221 LFHLACLRSWLDQG 234 (452)
Q Consensus 221 ~Fh~~Cl~~Wl~~~ 234 (452)
-||..||..|+...
T Consensus 42 gFCRNCLs~Wy~ea 55 (104)
T COG3492 42 GFCRNCLSNWYREA 55 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999999864
No 143
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.15 E-value=20 Score=36.14 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=28.7
Q ss_pred ccccccccchhhhhhhc------ccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 200 DDECAICREPMAKAKKL------LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l------~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
...||||-..-...... -=.+..|.-|-.+|-.. ...||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~----R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV----RVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc----CccCCCCCC
Confidence 45899998875432111 11255566698999876 589999965
No 144
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.10 E-value=31 Score=25.16 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=7.0
Q ss_pred ccCCCCCCccccc
Q 012963 239 YSCPTCRKPLFVG 251 (452)
Q Consensus 239 ~~CP~CR~~~~~~ 251 (452)
..||+|.+++...
T Consensus 21 ~~CPlC~r~l~~e 33 (54)
T PF04423_consen 21 GCCPLCGRPLDEE 33 (54)
T ss_dssp EE-TTT--EE-HH
T ss_pred CcCCCCCCCCCHH
Confidence 4999999988653
No 145
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=25.82 E-value=4.2 Score=30.84 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=29.9
Q ss_pred HHHHhcccCCCCCCC-Ccc-cCCCCCCCCCCCCCCCCcccCCCCCcccc
Q 012963 271 ARQLSMGLDRQNNTG-QTL-PTGVFPNQTQPPVEGSPWRNAGLDSSWLH 317 (452)
Q Consensus 271 ~~~~~~g~~~~~~~~-~~~-~~~~~p~~~~~~~~~~~wd~aG~~~s~~~ 317 (452)
++.+++|++..+|+. |+. +.|.+.++.. ++++|.++- +.|+.
T Consensus 17 Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~---~~~i~C~~C--~~~v~ 60 (63)
T PF02148_consen 17 CGYVGCGRYSNGHALKHYKETGHPLAVSLS---TGSIWCYAC--DDYVY 60 (63)
T ss_dssp TS-EEETTTSTSHHHHHHHHHT--EEEETT---TTCEEETTT--TEEEE
T ss_pred CCcccccCCcCcHHHHhhcccCCeEEEECC---CCeEEEcCC--CcEEe
Confidence 455677777777776 777 8899998887 778999988 77665
No 146
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=25.77 E-value=11 Score=27.34 Aligned_cols=37 Identities=32% Similarity=0.821 Sum_probs=26.0
Q ss_pred cccccchhhhhhhc--ccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 203 CAICREPMAKAKKL--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 203 C~ICl~~~~~~~~l--~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
|..|...+...... .-+..||..|+ .|-.|+.++...
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf------------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECF------------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTS------------BETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEcccc------------ccCCCCCccCCC
Confidence 56677666644333 67788888884 899999887654
No 147
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=25.35 E-value=23 Score=36.68 Aligned_cols=50 Identities=24% Similarity=0.514 Sum_probs=0.0
Q ss_pred ccccccccchhhh-----------------h--hhcccchhhHHHHHHHHHhhcccc-----cccCCCCCCccc
Q 012963 200 DDECAICREPMAK-----------------A--KKLLCNHLFHLACLRSWLDQGLNE-----MYSCPTCRKPLF 249 (452)
Q Consensus 200 ~~~C~ICl~~~~~-----------------~--~~l~C~H~Fh~~Cl~~Wl~~~~~~-----~~~CP~CR~~~~ 249 (452)
..+|++|+..-.- + ..-||||+-=....+-|-+...+. +..||-|-..+.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 5689999975321 1 234999998788888898765332 358999988775
No 148
>PLN02189 cellulose synthase
Probab=24.77 E-value=46 Score=38.89 Aligned_cols=48 Identities=17% Similarity=0.409 Sum_probs=32.2
Q ss_pred ccccccccchhhhh----hhc---ccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKA----KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~----~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
...|.||-++.... ... .|+---|..|..-=.+. .++.||.|+.....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~e---g~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE---GTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc---CCccCcccCCchhh
Confidence 45899999987532 122 46666899998322222 27899999988763
No 149
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.50 E-value=19 Score=36.32 Aligned_cols=44 Identities=16% Similarity=0.379 Sum_probs=28.9
Q ss_pred cccccccccchhhhhhh-c--c--cchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 199 YDDECAICREPMAKAKK-L--L--CNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~-l--~--C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
....||+|-..-...+. + . =.|..|.-|-.+|-.. ...||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~----R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV----RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc----CccCCCCCC
Confidence 45689999887532211 1 1 1244556688899876 589999964
No 150
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=23.00 E-value=38 Score=25.57 Aligned_cols=17 Identities=35% Similarity=0.841 Sum_probs=11.7
Q ss_pred cccCCCCCCcccccccC
Q 012963 238 MYSCPTCRKPLFVGRRE 254 (452)
Q Consensus 238 ~~~CP~CR~~~~~~~~~ 254 (452)
+..||+|+..+....++
T Consensus 2 k~~CPlCkt~~n~gsk~ 18 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSKD 18 (61)
T ss_pred CccCCcccchhhcCCCC
Confidence 46899998887654443
No 151
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.72 E-value=2.4e+02 Score=31.53 Aligned_cols=38 Identities=24% Similarity=0.597 Sum_probs=26.4
Q ss_pred cccccccchhh----hhhhcccchhhHHHHHHHHHhhcccccccCCCCC
Q 012963 201 DECAICREPMA----KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 245 (452)
Q Consensus 201 ~~C~ICl~~~~----~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 245 (452)
..|-+|...-+ -+..+.|+-.+|..| |..- .+.||+|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~----~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDY----ASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhh----hccCcccC
Confidence 47888875433 245678999888887 5554 46899993
No 152
>KOG4501 consensus Transcription coactivator complex, P100 component [Transcription]
Probab=22.52 E-value=47 Score=35.85 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCCChhhHHhhhhcccceeeeeccccc
Q 012963 412 NILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451 (452)
Q Consensus 412 ~~~~~~~~v~~~~p~~p~~~~~~~~~~~~~~~~t~~~~l~ 451 (452)
.++..|.+|.+++|+.-..-|..=|.+--.++--|+||||
T Consensus 431 d~ds~~saV~~~lPdlg~gfi~~~l~~y~d~eqvI~~ild 470 (707)
T KOG4501|consen 431 DTDSSASAVYTELPDLGPGFIASSLSSYTDVEQVIRKILD 470 (707)
T ss_pred chhhHHHHHHHhCccccchHHHHHHHhhcCHHHHHHHhhc
Confidence 5667899999999999999999999986689999999987
No 153
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=20 Score=35.85 Aligned_cols=48 Identities=27% Similarity=0.575 Sum_probs=39.6
Q ss_pred ccccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 198 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
...+.|-||...+..+.+. .|.|-|+..|...|... ...||.||....
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~----~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM----GNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhh----hhccchhhcCcC
Confidence 3457899999988776555 59999999999999988 589999988654
No 154
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=21.72 E-value=1.6e+02 Score=31.82 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 012963 20 TPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDS 54 (452)
Q Consensus 20 ~~~~h~R~~~lL~~ll~~d~~~i~~~~~~~~~~g~ 54 (452)
++.+-+|.+.++++++++-.+|+.|.+.+......
T Consensus 161 PRif~fRa~ll~Lvfl~~~syWLFY~vrIl~~~~~ 195 (505)
T PF06638_consen 161 PRIFVFRALLLVLVFLFLFSYWLFYGVRILDPRES 195 (505)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhheeeechhh
Confidence 44467899999998888889998888876644433
No 155
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=21.19 E-value=46 Score=40.50 Aligned_cols=49 Identities=37% Similarity=0.691 Sum_probs=39.5
Q ss_pred ccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 200 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
...|.+|+...+.-..+ -|.-.||..|++.-+.......-.||-||..-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 45799999988775444 56678999999998887766678999999865
No 156
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=20.74 E-value=1.1e+02 Score=24.47 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=19.0
Q ss_pred ccccccccchhhhh----h---hcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKA----K---KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~----~---~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
...|.||-++.... . .-.|+---|+.|..-=.+.+ ++.||.|+.....
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg---~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG---NQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS----SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC---cccccccCCCccc
Confidence 45899999987532 1 12577778889985433333 7899999976643
No 157
>PLN02436 cellulose synthase A
Probab=20.70 E-value=61 Score=38.02 Aligned_cols=48 Identities=17% Similarity=0.412 Sum_probs=32.0
Q ss_pred ccccccccchhhhh----hhc---ccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKA----KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~----~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
...|.||-++.... ... .|+---|..|..-=.+. .++.||.|+.....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~e---g~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERRE---GNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc---CCccCcccCCchhh
Confidence 45899999987432 122 45555899998432222 27899999987753
No 158
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=20.14 E-value=30 Score=34.77 Aligned_cols=51 Identities=24% Similarity=0.441 Sum_probs=31.7
Q ss_pred Hhhccccccccccchhhhh--------------hhcccchhhHHHHHHHHHhhcc--cccccCCCCCCcc
Q 012963 195 ELRAYDDECAICREPMAKA--------------KKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPL 248 (452)
Q Consensus 195 ~l~~~~~~C~ICl~~~~~~--------------~~l~C~H~Fh~~Cl~~Wl~~~~--~~~~~CP~CR~~~ 248 (452)
++.+..+.||+=+..+.-| +-|.|||+-- ...|-.+.. .....||+||..-
T Consensus 285 ~iNA~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G---~H~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 285 EINAARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHG---YHNWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred HHhccCCCCCcccceeecccccccccccccCCeEEEecccccc---ccccccccccCcccCcCCeeeeec
Confidence 4445567899988877432 2369998722 235754432 2257899999753
No 159
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=20.03 E-value=33 Score=30.86 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 222 FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 222 Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
||..||+.=|..-....-.||.|+..-..+
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~ 31 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSGQ 31 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCCC
Confidence 788999888876555568999998765443
Done!