Query 012963
Match_columns 452
No_of_seqs 503 out of 2192
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 19:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ejs_A Autocrine motility fact 99.7 5.6E-18 1.9E-22 124.7 0.2 49 403-451 3-51 (58)
2 2ekf_A Ancient ubiquitous prot 99.7 8.3E-18 2.8E-22 124.8 0.0 48 404-451 4-51 (61)
3 4g3o_A E3 ubiquitin-protein li 99.6 2.4E-16 8.1E-21 115.3 1.6 42 410-451 14-55 (58)
4 2l0b_A E3 ubiquitin-protein li 99.2 5.5E-13 1.9E-17 108.8 -0.7 48 199-250 39-89 (91)
5 3ng2_A RNF4, snurf, ring finge 99.2 3.1E-12 1.1E-16 98.7 2.8 49 199-251 9-64 (71)
6 2ecl_A Ring-box protein 2; RNF 99.2 1.9E-12 6.4E-17 103.3 1.0 49 199-251 14-77 (81)
7 2kiz_A E3 ubiquitin-protein li 99.2 3.1E-12 1.1E-16 98.4 1.9 51 198-252 12-65 (69)
8 1x4j_A Ring finger protein 38; 99.2 1.6E-12 5.6E-17 101.8 0.3 49 198-250 21-72 (75)
9 2ea6_A Ring finger protein 4; 99.2 4.4E-12 1.5E-16 97.2 2.6 48 198-249 13-67 (69)
10 1iym_A EL5; ring-H2 finger, ub 99.2 1.3E-12 4.6E-17 95.8 -0.3 47 199-249 4-54 (55)
11 2xeu_A Ring finger protein 4; 99.2 5.5E-12 1.9E-16 95.1 2.7 48 200-251 3-57 (64)
12 2ep4_A Ring finger protein 24; 99.2 5.4E-12 1.8E-16 98.4 2.6 49 199-251 14-65 (74)
13 2djb_A Polycomb group ring fin 99.2 7E-12 2.4E-16 97.4 2.6 51 199-253 14-65 (72)
14 2ecm_A Ring finger and CHY zin 99.2 3.3E-12 1.1E-16 93.6 0.3 47 199-249 4-54 (55)
15 2d8t_A Dactylidin, ring finger 99.2 3.2E-12 1.1E-16 99.1 -0.0 49 199-251 14-62 (71)
16 2ect_A Ring finger protein 126 99.1 6.3E-12 2.2E-16 99.0 1.3 52 198-253 13-67 (78)
17 1v87_A Deltex protein 2; ring- 99.1 8.8E-12 3E-16 105.5 2.2 52 200-251 25-95 (114)
18 1chc_A Equine herpes virus-1 r 99.1 7.3E-12 2.5E-16 95.9 1.2 48 199-250 4-52 (68)
19 4ayc_A E3 ubiquitin-protein li 99.1 9.8E-12 3.4E-16 109.1 1.6 48 199-250 52-99 (138)
20 2ecy_A TNF receptor-associated 99.1 1.3E-11 4.5E-16 94.1 1.5 50 199-251 14-63 (66)
21 3dpl_R Ring-box protein 1; ubi 99.1 1.4E-11 4.7E-16 103.4 1.2 48 199-250 36-101 (106)
22 2ysl_A Tripartite motif-contai 99.1 2.1E-11 7.3E-16 94.6 1.0 52 199-251 19-70 (73)
23 2csy_A Zinc finger protein 183 99.1 1.9E-11 6.6E-16 97.1 0.7 47 199-249 14-60 (81)
24 2yur_A Retinoblastoma-binding 99.1 2.9E-11 1E-15 94.5 1.6 50 199-250 14-64 (74)
25 1t1h_A Gspef-atpub14, armadill 99.0 3E-11 1E-15 95.1 1.3 50 199-251 7-56 (78)
26 2ecn_A Ring finger protein 141 99.0 9.5E-12 3.3E-16 95.9 -1.7 49 199-252 14-62 (70)
27 3lrq_A E3 ubiquitin-protein li 99.0 3E-11 1E-15 100.1 0.9 50 199-251 21-71 (100)
28 2ct2_A Tripartite motif protei 99.0 4.1E-11 1.4E-15 96.3 1.4 52 199-251 14-69 (88)
29 3fl2_A E3 ubiquitin-protein li 99.0 9.1E-11 3.1E-15 100.8 3.6 49 199-250 51-99 (124)
30 1g25_A CDK-activating kinase a 99.0 9E-11 3.1E-15 89.1 2.3 49 200-251 3-56 (65)
31 4a0k_B E3 ubiquitin-protein li 99.0 3.9E-11 1.3E-15 102.2 0.1 48 199-250 47-112 (117)
32 2y43_A E3 ubiquitin-protein li 99.0 7E-11 2.4E-15 97.4 0.8 48 199-250 21-69 (99)
33 2ckl_A Polycomb group ring fin 99.0 1.2E-10 4.2E-15 97.5 1.6 50 198-251 13-63 (108)
34 2ysj_A Tripartite motif-contai 99.0 1.1E-10 3.6E-15 88.1 0.9 46 198-244 18-63 (63)
35 2ecw_A Tripartite motif-contai 98.9 1.5E-10 5.2E-15 92.0 1.8 53 199-251 18-72 (85)
36 2egp_A Tripartite motif-contai 98.9 5.5E-11 1.9E-15 93.6 -0.9 53 199-251 11-66 (79)
37 4ap4_A E3 ubiquitin ligase RNF 98.9 2.6E-10 9E-15 98.2 2.6 50 199-252 6-62 (133)
38 2ecv_A Tripartite motif-contai 98.9 1.9E-10 6.5E-15 91.4 1.5 53 199-251 18-72 (85)
39 3ztg_A E3 ubiquitin-protein li 98.9 1.4E-10 4.7E-15 94.2 0.7 49 199-249 12-61 (92)
40 1z6u_A NP95-like ring finger p 98.9 4E-10 1.4E-14 100.3 3.2 50 199-251 77-126 (150)
41 2ecj_A Tripartite motif-contai 98.9 1.8E-10 6E-15 85.1 0.3 45 199-244 14-58 (58)
42 3l11_A E3 ubiquitin-protein li 98.9 7.9E-11 2.7E-15 99.8 -2.2 48 200-250 15-62 (115)
43 1jm7_A BRCA1, breast cancer ty 98.9 2.9E-10 9.8E-15 95.5 1.0 51 200-251 21-71 (112)
44 2ckl_B Ubiquitin ligase protei 98.9 2.6E-10 8.9E-15 102.8 0.8 49 199-250 53-102 (165)
45 1rmd_A RAG1; V(D)J recombinati 98.9 3.4E-10 1.2E-14 96.0 1.0 50 199-251 22-71 (116)
46 2d8s_A Cellular modulator of i 98.9 3.8E-10 1.3E-14 89.7 1.2 52 199-252 14-72 (80)
47 3hct_A TNF receptor-associated 98.9 4.8E-10 1.6E-14 95.6 1.4 50 199-251 17-66 (118)
48 4ap4_A E3 ubiquitin ligase RNF 98.8 7.8E-10 2.7E-14 95.2 2.6 51 198-252 70-127 (133)
49 2kr4_A Ubiquitin conjugation f 98.8 7.2E-10 2.5E-14 89.1 1.4 48 199-250 13-60 (85)
50 1e4u_A Transcriptional repress 98.8 1.9E-09 6.5E-14 85.2 3.5 51 199-252 10-64 (78)
51 2kre_A Ubiquitin conjugation f 98.8 8.9E-10 3E-14 91.3 1.0 48 199-250 28-75 (100)
52 2vje_B MDM4 protein; proto-onc 98.8 1.2E-09 4.2E-14 82.6 1.2 48 198-249 5-55 (63)
53 2vje_A E3 ubiquitin-protein li 98.8 1.2E-09 4.2E-14 82.9 1.1 47 199-249 7-56 (64)
54 1wgm_A Ubiquitin conjugation f 98.8 1.4E-09 4.9E-14 89.7 1.1 48 199-250 21-69 (98)
55 2ct0_A Non-SMC element 1 homol 98.7 1.8E-09 6.1E-14 84.4 1.2 54 199-254 14-68 (74)
56 2y1n_A E3 ubiquitin-protein li 98.7 1.9E-09 6.3E-14 109.3 1.6 48 201-251 333-380 (389)
57 2c2l_A CHIP, carboxy terminus 98.7 3.1E-09 1E-13 103.0 2.8 49 199-250 207-255 (281)
58 1bor_A Transcription factor PM 98.7 1E-09 3.5E-14 81.0 -1.1 46 199-251 5-50 (56)
59 3knv_A TNF receptor-associated 98.7 9.9E-10 3.4E-14 96.7 -1.5 50 198-250 29-78 (141)
60 1jm7_B BARD1, BRCA1-associated 98.6 2.7E-09 9.3E-14 90.7 -0.6 46 199-250 21-67 (117)
61 4ic3_A E3 ubiquitin-protein li 98.6 3E-09 1E-13 83.1 -0.9 44 199-250 23-67 (74)
62 2yu4_A E3 SUMO-protein ligase 98.6 1.1E-08 3.8E-13 83.6 1.1 50 200-249 7-62 (94)
63 2f42_A STIP1 homology and U-bo 98.5 1.4E-08 4.9E-13 92.6 1.5 48 200-250 106-153 (179)
64 3hcs_A TNF receptor-associated 98.5 1.5E-08 5.3E-13 91.5 1.4 50 199-251 17-66 (170)
65 2ecg_A Baculoviral IAP repeat- 98.5 1.5E-08 5.2E-13 79.2 0.5 44 199-250 24-68 (75)
66 2ea5_A Cell growth regulator w 98.4 3.2E-08 1.1E-12 76.0 0.2 46 198-251 13-59 (68)
67 3k1l_B Fancl; UBC, ring, RWD, 98.3 1.4E-07 4.7E-12 93.3 2.7 52 199-250 307-373 (381)
68 2yho_A E3 ubiquitin-protein li 98.3 5.6E-08 1.9E-12 76.9 -1.2 45 199-251 17-62 (79)
69 3htk_C E3 SUMO-protein ligase 98.3 2E-07 6.7E-12 89.3 1.5 51 199-251 180-233 (267)
70 2bay_A PRE-mRNA splicing facto 98.3 1.7E-07 5.8E-12 70.4 0.8 48 201-252 4-52 (61)
71 1vyx_A ORF K3, K3RING; zinc-bi 98.2 2.4E-07 8.2E-12 69.3 1.6 49 199-249 5-58 (60)
72 1wim_A KIAA0161 protein; ring 98.1 5.2E-07 1.8E-11 73.4 0.9 48 200-247 5-61 (94)
73 3t6p_A Baculoviral IAP repeat- 98.1 2.2E-07 7.5E-12 93.3 -1.8 44 199-250 294-338 (345)
74 3vk6_A E3 ubiquitin-protein li 97.7 6.4E-06 2.2E-10 67.0 0.8 47 202-251 3-50 (101)
75 3nw0_A Non-structural maintena 97.2 0.00012 4E-09 69.7 1.9 52 200-253 180-232 (238)
76 2dhy_A CUE domain-containing p 97.1 0.00019 6.6E-09 54.4 2.5 39 414-452 19-58 (67)
77 2di0_A Activating signal coint 96.2 0.0015 5.3E-08 49.8 1.5 41 411-451 11-52 (71)
78 2qho_B E3 ubiquitin-protein li 95.3 0.005 1.7E-07 42.9 1.2 38 415-452 11-49 (53)
79 2g45_A Ubiquitin carboxyl-term 94.8 0.00083 2.8E-08 57.7 -4.8 86 224-317 1-106 (129)
80 1p3q_Q VPS9P, vacuolar protein 94.6 0.022 7.6E-07 41.0 2.9 42 411-452 10-52 (54)
81 2i50_A Ubiquitin carboxyl-term 94.3 0.00096 3.3E-08 57.1 -5.6 92 215-317 4-107 (126)
82 3ihp_A Ubiquitin carboxyl-term 94.2 0.0031 1.1E-07 70.5 -3.4 103 206-316 162-286 (854)
83 1wgl_A TOLL-interacting protei 94.0 0.016 5.3E-07 42.8 1.2 38 415-452 11-49 (59)
84 1otr_A Protein CUE2; protein-p 92.5 0.023 7.7E-07 40.3 0.0 37 416-452 7-44 (49)
85 2ko5_A Ring finger protein Z; 91.8 0.036 1.2E-06 44.3 0.4 45 201-251 29-74 (99)
86 2jun_A Midline-1; B-BOX, TRIM, 90.8 0.036 1.2E-06 44.9 -0.6 31 200-230 3-36 (101)
87 3c5k_A HD6, histone deacetylas 90.5 0.011 3.9E-07 49.1 -3.9 55 259-318 25-86 (109)
88 2lri_C Autoimmune regulator; Z 87.4 0.12 4E-06 38.9 0.1 46 199-247 11-59 (66)
89 1wil_A KIAA1045 protein; ring 86.2 0.16 5.5E-06 39.8 0.3 47 198-245 13-74 (89)
90 3m62_A Ubiquitin conjugation f 77.5 1.7 5.7E-05 48.7 4.4 48 200-251 891-939 (968)
91 2k16_A Transcription initiatio 71.9 0.2 6.7E-06 38.4 -3.5 51 199-249 17-70 (75)
92 2cs3_A Protein C14ORF4, MY039 69.7 1.3 4.5E-05 34.3 0.8 44 201-244 16-64 (93)
93 1f62_A Transcription factor WS 68.7 0.65 2.2E-05 32.6 -1.1 45 202-246 2-49 (51)
94 3u5n_A E3 ubiquitin-protein li 68.4 0.32 1.1E-05 44.7 -3.5 51 198-248 5-55 (207)
95 2l5u_A Chromodomain-helicase-D 67.6 0.53 1.8E-05 34.6 -1.8 45 199-246 10-57 (61)
96 1mm2_A MI2-beta; PHD, zinc fin 65.8 0.32 1.1E-05 35.7 -3.3 48 198-248 7-57 (61)
97 3o36_A Transcription intermedi 64.7 0.84 2.9E-05 41.0 -1.4 47 199-248 3-52 (184)
98 2uzg_A Ubiquitin carboxyl-term 62.2 0.24 8.4E-06 40.0 -4.9 41 271-316 46-88 (97)
99 2ro1_A Transcription intermedi 59.8 0.82 2.8E-05 41.4 -2.4 48 200-247 2-49 (189)
100 1fp0_A KAP-1 corepressor; PHD 57.1 1.2 4.1E-05 35.3 -1.5 48 198-248 23-73 (88)
101 2ida_A Hypothetical protein; z 54.8 0.93 3.2E-05 37.0 -2.6 43 271-318 40-87 (102)
102 2ysm_A Myeloid/lymphoid or mix 54.0 1.2 4.1E-05 36.5 -2.2 47 199-245 6-55 (111)
103 3shb_A E3 ubiquitin-protein li 48.4 1.3 4.6E-05 34.1 -2.6 45 202-246 28-76 (77)
104 2lbm_A Transcriptional regulat 46.0 5 0.00017 34.6 0.4 49 198-246 61-116 (142)
105 3lqh_A Histone-lysine N-methyl 43.6 2.3 7.9E-05 38.3 -2.2 49 200-248 2-64 (183)
106 3v43_A Histone acetyltransfera 43.6 2.1 7.1E-05 35.3 -2.3 45 202-246 63-111 (112)
107 2yql_A PHD finger protein 21A; 43.0 0.38 1.3E-05 34.6 -6.1 46 198-246 7-55 (56)
108 3asl_A E3 ubiquitin-protein li 42.4 2.4 8.1E-05 32.0 -2.0 45 202-246 20-68 (70)
109 2puy_A PHD finger protein 21A; 41.7 0.4 1.4E-05 35.0 -6.3 47 199-248 4-53 (60)
110 1xwh_A Autoimmune regulator; P 39.8 0.87 3E-05 33.9 -4.7 45 199-246 7-54 (66)
111 3i2d_A E3 SUMO-protein ligase 38.7 10 0.00035 37.8 1.4 51 200-251 249-301 (371)
112 2dae_A KIAA0733 protein; mitog 37.9 25 0.00087 26.4 3.1 24 415-438 12-35 (75)
113 2e6r_A Jumonji/ARID domain-con 37.8 1.4 4.9E-05 35.1 -4.1 49 199-247 15-66 (92)
114 1we9_A PHD finger family prote 37.6 1.1 3.8E-05 32.9 -4.4 49 199-247 5-58 (64)
115 2e6s_A E3 ubiquitin-protein li 36.2 2.3 7.7E-05 32.8 -3.0 45 202-246 28-76 (77)
116 4fo9_A E3 SUMO-protein ligase 35.7 12 0.00041 37.1 1.4 51 200-251 215-267 (360)
117 2o35_A Hypothetical protein DU 34.6 11 0.00039 30.2 0.8 13 222-234 43-55 (105)
118 3fyb_A Protein of unknown func 34.6 11 0.00039 30.1 0.8 13 222-234 42-54 (104)
119 3ask_A E3 ubiquitin-protein li 34.2 2.7 9.3E-05 39.1 -3.4 45 202-246 176-224 (226)
120 3ql9_A Transcriptional regulat 34.0 12 0.00042 31.6 1.0 50 198-247 55-111 (129)
121 1wev_A Riken cDNA 1110020M19; 33.2 1.1 3.8E-05 35.4 -5.4 52 199-250 15-75 (88)
122 2lv9_A Histone-lysine N-methyl 28.9 4.5 0.00015 32.5 -2.5 43 202-246 30-75 (98)
123 1weo_A Cellulose synthase, cat 28.3 36 0.0012 26.8 2.6 48 200-250 16-70 (93)
124 2yt5_A Metal-response element- 27.7 1.6 5.4E-05 32.2 -5.1 49 199-247 5-61 (66)
125 3mpx_A FYVE, rhogef and PH dom 27.3 13 0.00045 37.3 0.0 48 200-247 375-429 (434)
126 2kgg_A Histone demethylase jar 27.2 4.4 0.00015 28.4 -2.5 44 202-245 4-52 (52)
127 2xb1_A Pygopus homolog 2, B-ce 26.9 3.4 0.00012 33.7 -3.6 49 201-249 4-63 (105)
128 2dar_A PDZ and LIM domain prot 26.1 8 0.00027 29.9 -1.5 40 199-250 24-63 (90)
129 1x62_A C-terminal LIM domain p 24.7 8.6 0.00029 28.9 -1.5 38 200-249 15-52 (79)
130 2cu8_A Cysteine-rich protein 2 23.2 12 0.0004 27.8 -1.0 39 200-250 9-48 (76)
131 1joc_A EEA1, early endosomal a 23.1 19 0.00065 30.1 0.2 29 201-229 70-102 (125)
132 2d8z_A Four and A half LIM dom 22.2 12 0.00041 27.1 -1.1 38 200-249 5-42 (70)
133 2d8x_A Protein pinch; LIM doma 22.1 12 0.0004 27.3 -1.2 40 200-251 5-44 (70)
134 2cur_A Skeletal muscle LIM-pro 21.9 12 0.0004 27.2 -1.2 38 200-249 5-42 (69)
135 1nyp_A Pinch protein; LIM doma 21.7 11 0.00038 27.0 -1.3 39 200-250 5-43 (66)
136 4gne_A Histone-lysine N-methyl 21.5 8.2 0.00028 31.6 -2.3 48 198-250 13-65 (107)
137 3mjh_B Early endosome antigen 21.2 17 0.00057 23.4 -0.4 13 201-213 6-18 (34)
138 1x64_A Alpha-actinin-2 associa 20.8 14 0.00048 28.4 -1.0 39 200-250 25-63 (89)
139 1wen_A Inhibitor of growth fam 20.5 14 0.00049 27.7 -1.0 45 200-248 16-66 (71)
140 1weu_A Inhibitor of growth fam 20.5 14 0.00049 29.2 -1.0 44 201-248 37-86 (91)
141 2jvx_A NF-kappa-B essential mo 20.5 25 0.00085 21.6 0.3 13 238-250 3-15 (28)
142 1wyh_A SLIM 2, skeletal muscle 20.3 14 0.00049 26.9 -1.0 39 200-250 5-45 (72)
No 1
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.6e-18 Score=124.73 Aligned_cols=49 Identities=39% Similarity=0.603 Sum_probs=45.4
Q ss_pred ccccchhHHHHHHHHHHHHHHcCCCChhhHHhhhhcccceeeeeccccc
Q 012963 403 SRSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451 (452)
Q Consensus 403 ~~~~~~~~~~~~~~~~~v~~~~p~~p~~~~~~~~~~~~~~~~t~~~~l~ 451 (452)
++.++.+++|+.+||++|++||||+|.+.|++||++||||++|++||||
T Consensus 3 ~~~~~~~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~TgsVe~TienILe 51 (58)
T 2ejs_A 3 SGSSGASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 51 (58)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHCCSSCHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred CCcCCcchHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHh
Confidence 4456667799999999999999999999999999999999999999997
No 2
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.3e-18 Score=124.79 Aligned_cols=48 Identities=35% Similarity=0.601 Sum_probs=44.1
Q ss_pred cccchhHHHHHHHHHHHHHHcCCCChhhHHhhhhcccceeeeeccccc
Q 012963 404 RSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451 (452)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~~~p~~p~~~~~~~~~~~~~~~~t~~~~l~ 451 (452)
++++.+++|+.+||++|++||||||.+.|++||++||||++|++||||
T Consensus 4 ~~~~~~~~ql~~mv~~V~~mfP~vp~~~I~~DL~~TgsVe~TienILe 51 (61)
T 2ekf_A 4 GSSGSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLE 51 (61)
T ss_dssp SSSCCCCCCHHHHHHHHHHHCSSSCHHHHHHHHHTSCCHHHHHHHHHS
T ss_pred CCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHc
Confidence 345555689999999999999999999999999999999999999997
No 3
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=99.58 E-value=2.4e-16 Score=115.34 Aligned_cols=42 Identities=40% Similarity=0.660 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHcCCCChhhHHhhhhcccceeeeeccccc
Q 012963 410 IANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 451 (452)
Q Consensus 410 ~~~~~~~~~~v~~~~p~~p~~~~~~~~~~~~~~~~t~~~~l~ 451 (452)
++|+.+||++|++||||+|.+.|++||++||||++|++||||
T Consensus 14 ~sql~~Mve~V~~mFPqv~~~~I~~DL~rTgSVe~TienILe 55 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHc
Confidence 589999999999999999999999999999999999999997
No 4
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.24 E-value=5.5e-13 Score=108.76 Aligned_cols=48 Identities=35% Similarity=0.782 Sum_probs=42.1
Q ss_pred cccccccccchhhh---hhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~---~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.. .+.++|+|.||..||.+|+.. +.+||+||+.+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCccCCC
Confidence 45689999999977 567899999999999999987 5899999998754
No 5
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.22 E-value=3.1e-12 Score=98.73 Aligned_cols=49 Identities=33% Similarity=0.665 Sum_probs=43.5
Q ss_pred cccccccccchhhhh-------hhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~-------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.++ +.++|||.||..|+.+|+.+ +.+||+||..+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCccChh
Confidence 456899999999987 67899999999999999988 58999999988754
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.9e-12 Score=103.30 Aligned_cols=49 Identities=37% Similarity=0.788 Sum_probs=40.2
Q ss_pred cccccccccchhhh--------------hhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAK--------------AKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~--------------~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+++|+||++.+.+ .+.+ +|+|.||..||.+|+.+ +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCcchh
Confidence 45679999998865 2345 49999999999999998 58999999988654
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=3.1e-12 Score=98.40 Aligned_cols=51 Identities=31% Similarity=0.790 Sum_probs=43.0
Q ss_pred ccccccccccchhhh---hhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 198 AYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~---~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
..+..|+||++.+.. ++.++|+|.||..||.+|+.+ +.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccccCcC
Confidence 345789999999853 467899999999999999998 578999999987643
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-12 Score=101.80 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=43.0
Q ss_pred ccccccccccchhhhh---hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 198 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~---~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
..+..|+||++.+..+ ..++|+|.||..||.+|+.. +.+||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCCC
Confidence 3467899999999876 67899999999999999988 5899999998865
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=4.4e-12 Score=97.17 Aligned_cols=48 Identities=33% Similarity=0.708 Sum_probs=42.6
Q ss_pred ccccccccccchhhhh-------hhcccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 198 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~-------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
..+..|+||++.+.++ +.++|||.||..||.+|+.. +.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccC
Confidence 3456899999999987 67899999999999999988 589999999875
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.20 E-value=1.3e-12 Score=95.80 Aligned_cols=47 Identities=36% Similarity=0.838 Sum_probs=40.8
Q ss_pred cccccccccchhhh---hhhcc-cchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 199 YDDECAICREPMAK---AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 199 ~~~~C~ICl~~~~~---~~~l~-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.+.+|+||++.+.+ ...++ |+|.||..|+.+|+++ +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEeE
Confidence 45689999999987 45676 9999999999999988 689999999764
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.19 E-value=5.5e-12 Score=95.13 Aligned_cols=48 Identities=33% Similarity=0.686 Sum_probs=42.7
Q ss_pred ccccccccchhhhh-------hhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 200 DDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~~~~~~-------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
+.+|+||++.+.++ ..++|||.||..|+.+|+.+ +.+||+||.++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCCcc
Confidence 45899999999887 57899999999999999988 58999999988754
No 12
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=5.4e-12 Score=98.43 Aligned_cols=49 Identities=33% Similarity=0.792 Sum_probs=42.2
Q ss_pred cccccccccchhhhhhh---cccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~---l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+..+.. ++|+|.||..||.+|++. +.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCcccccc
Confidence 45689999999987644 499999999999999988 57999999998653
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=7e-12 Score=97.40 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=45.0
Q ss_pred cccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCccccccc
Q 012963 199 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 253 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~ 253 (452)
.+..|+||++.+.+++.+ +|+|.||..||.+|++. +..||+||..+...++
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCcccc
Confidence 456899999999999887 99999999999999987 5899999999876544
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.16 E-value=3.3e-12 Score=93.60 Aligned_cols=47 Identities=36% Similarity=0.776 Sum_probs=40.9
Q ss_pred cccccccccchhhh----hhhcccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 199 YDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 199 ~~~~C~ICl~~~~~----~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.+..|+||++.+.+ ++.++|+|.||..|+.+|++. ..+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcCC
Confidence 35689999999865 567899999999999999998 589999999764
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.2e-12 Score=99.05 Aligned_cols=49 Identities=27% Similarity=0.510 Sum_probs=44.4
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|+|.||..|+.+|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL----GKRCALCRQEIPED 62 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC----SSBCSSSCCBCCHH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC----CCcCcCcCchhCHh
Confidence 45689999999999999999999999999999987 58999999998754
No 16
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.14 E-value=6.3e-12 Score=99.03 Aligned_cols=52 Identities=44% Similarity=0.917 Sum_probs=44.0
Q ss_pred ccccccccccchhhhh---hhcccchhhHHHHHHHHHhhcccccccCCCCCCccccccc
Q 012963 198 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 253 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~---~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~ 253 (452)
..+..|+||++.+..+ ..++|+|.||..||.+|+++ +.+||+||+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccCCccc
Confidence 4567899999999765 44699999999999999987 5899999999876543
No 17
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.14 E-value=8.8e-12 Score=105.47 Aligned_cols=52 Identities=33% Similarity=0.692 Sum_probs=41.0
Q ss_pred ccccccccchhhhhh------------------hcccchhhHHHHHHHHHhhcc-cccccCCCCCCccccc
Q 012963 200 DDECAICREPMAKAK------------------KLLCNHLFHLACLRSWLDQGL-NEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~------------------~l~C~H~Fh~~Cl~~Wl~~~~-~~~~~CP~CR~~~~~~ 251 (452)
++.|+||++.|..+. .++|+|.||..||.+|+.... ..+.+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999996543 579999999999999995321 1157999999988654
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.13 E-value=7.3e-12 Score=95.94 Aligned_cols=48 Identities=31% Similarity=0.766 Sum_probs=42.7
Q ss_pred cccccccccchhhhh-hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~-~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.++ +.++|||.||..|+.+|+.+ +.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence 456899999999885 77899999999999999987 5899999998864
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=9.8e-12 Score=109.08 Aligned_cols=48 Identities=33% Similarity=0.787 Sum_probs=43.5
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.+++.+||||.||..||..|+.. +.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR----KIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT----CSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc----CCcCCCCCCcCCC
Confidence 34579999999999999999999999999999988 6899999998854
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.3e-11 Score=94.14 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=43.6
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|||.||..|+.+|+.+. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS---SPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS---SCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC---cCCCCCCCcCCChh
Confidence 356899999999999999999999999999999642 57999999988653
No 21
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.10 E-value=1.4e-11 Score=103.36 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=40.9
Q ss_pred cccccccccchhhhh------------------hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~------------------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.++.|+||++.|..+ ..++|+|.||..||.+|+.+ +.+||+||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCccee
Confidence 467899999999753 23699999999999999998 6899999998654
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.1e-11 Score=94.58 Aligned_cols=52 Identities=23% Similarity=0.594 Sum_probs=44.0
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|||.||..|+.+|++... ....||+||..+...
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCcc
Confidence 4568999999999999999999999999999997311 157999999988654
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.9e-11 Score=97.08 Aligned_cols=47 Identities=23% Similarity=0.498 Sum_probs=43.0
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.+..|+||++.+.+++.++|||.||..|+.+|+.. ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 45689999999999999999999999999999987 589999999885
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.06 E-value=2.9e-11 Score=94.46 Aligned_cols=50 Identities=26% Similarity=0.528 Sum_probs=43.0
Q ss_pred cccccccccchhhhhhhcc-cchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.+++.++ |||.||..||.+|+.... ...||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCC
Confidence 4568999999999999999 999999999999998631 2699999997654
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.05 E-value=3e-11 Score=95.11 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=44.1
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.|.+++.++|||.||..||.+|+.++ +.+||+||..+...
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG---HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC---cCCCCCCcCCCChh
Confidence 345899999999999999999999999999999863 57999999988643
No 26
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=9.5e-12 Score=95.92 Aligned_cols=49 Identities=33% Similarity=0.757 Sum_probs=43.5
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
.+..|+||++.+.+ +.++|+|.||..|+.+|+.+ +..||+||..+...+
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR----HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC----CSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC----cCcCCCcCCcccCCC
Confidence 45689999999998 88899999999999999986 689999999887543
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.04 E-value=3e-11 Score=100.12 Aligned_cols=50 Identities=34% Similarity=0.761 Sum_probs=43.9
Q ss_pred cccccccccchhhhhhh-cccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~-l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++. ++|||.||..||.+|+... ...||+||.++...
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCCHH
Confidence 34589999999999998 9999999999999999973 26999999998653
No 28
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=4.1e-11 Score=96.28 Aligned_cols=52 Identities=31% Similarity=0.572 Sum_probs=43.9
Q ss_pred cccccccccchhhh----hhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~----~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+ ++.++|||.||..|+.+|+.... ....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccch
Confidence 45689999999998 88899999999999999998731 137999999987653
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.03 E-value=9.1e-11 Score=100.83 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=43.5
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.+++.++|||.||..||..|+..+ ...||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ---VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC---cCCCCCCCccCCC
Confidence 456899999999999999999999999999999853 4599999998864
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=9e-11 Score=89.15 Aligned_cols=49 Identities=24% Similarity=0.620 Sum_probs=41.2
Q ss_pred ccccccccc-hhhhhh----hcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 200 DDECAICRE-PMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~-~~~~~~----~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
+..|+||++ .+.++. .++|||.||..|+.+|+.++ ...||+||+.+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCccccc
Confidence 457999999 888774 57999999999999998763 57899999998654
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.00 E-value=3.9e-11 Score=102.19 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=0.9
Q ss_pred cccccccccchhhhh------------------hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~------------------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.++.|+||++.|.++ ..++|+|.||..||.+|+.. +.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWEF 112 (117)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCeeee
Confidence 357899999999752 12589999999999999998 6899999998654
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.98 E-value=7e-11 Score=97.44 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=43.3
Q ss_pred cccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.+++.+ +|||.||..|+.+|+.. +..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 456899999999999887 89999999999999997 5899999998865
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.96 E-value=1.2e-10 Score=97.55 Aligned_cols=50 Identities=22% Similarity=0.512 Sum_probs=44.6
Q ss_pred ccccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 198 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
..+..|+||++.+.+++.+ +|||.||..||.+|+.. +..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----CCcCcCCCcccccc
Confidence 3456899999999999987 99999999999999987 58999999988754
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.1e-10 Score=88.11 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=39.3
Q ss_pred ccccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCC
Q 012963 198 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 244 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 244 (452)
..+..|+||++.+.+++.++|||.||..||.+|++... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 34568999999999999999999999999999998521 14699998
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=1.5e-10 Score=91.98 Aligned_cols=53 Identities=30% Similarity=0.605 Sum_probs=44.6
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcc--cccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~--~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|+|.||..|+.+|+.... .....||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4568999999999999999999999999999998731 1147999999988654
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.95 E-value=5.5e-11 Score=93.61 Aligned_cols=53 Identities=25% Similarity=0.486 Sum_probs=44.5
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcc---cccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~---~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|||.||..|+.+|+.... .....||+||..+...
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4568999999999999999999999999999997621 1247999999998653
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=2.6e-10 Score=98.21 Aligned_cols=50 Identities=34% Similarity=0.683 Sum_probs=44.2
Q ss_pred cccccccccchhhhh-------hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 199 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~-------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
.+.+|+||++.+.++ +.++|||.||..||.+|++. +.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcCcccc
Confidence 346899999999988 78899999999999999988 579999999987543
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.9e-10 Score=91.43 Aligned_cols=53 Identities=30% Similarity=0.535 Sum_probs=44.7
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhc--ccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~--~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|||.||..|+.+|+... ......||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 456899999999999999999999999999999762 11247999999998753
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.93 E-value=1.4e-10 Score=94.22 Aligned_cols=49 Identities=27% Similarity=0.546 Sum_probs=42.4
Q ss_pred cccccccccchhhhhhhcc-cchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 199 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.+..|+||++.|.+++.++ |||.||..||.+|+.... ...||+||..+.
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 3458999999999999999 999999999999997531 369999999863
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.91 E-value=4e-10 Score=100.29 Aligned_cols=50 Identities=26% Similarity=0.518 Sum_probs=44.1
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|||.||..||..|+... ...||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 346899999999999999999999999999999863 35899999988653
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.8e-10 Score=85.15 Aligned_cols=45 Identities=27% Similarity=0.780 Sum_probs=38.2
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCC
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 244 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 244 (452)
.+..|+||++.+.+++.++|||.||..||.+|+.... ....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 4568999999999999999999999999999965311 15899998
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.89 E-value=7.9e-11 Score=99.84 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=43.0
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
+..|+||++.+.+++.++|||.||..||.+|+..+ ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA---SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT---TSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC---cCCCCCCCcccCc
Confidence 45899999999999999999999999999999764 4799999998864
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=2.9e-10 Score=95.53 Aligned_cols=51 Identities=27% Similarity=0.576 Sum_probs=43.4
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
+..|+||++.+.+++.++|||.||..|+.+|+..... ...||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG-PSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSS-SCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCC-CCCCcCCCCcCCHh
Confidence 4589999999999999999999999999999986311 25899999988754
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.88 E-value=2.6e-10 Score=102.83 Aligned_cols=49 Identities=33% Similarity=0.645 Sum_probs=43.0
Q ss_pred cccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.+++.+ +|||.||..||.+|+..+ ...||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 345899999999999887 999999999999999864 5789999998854
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=3.4e-10 Score=95.99 Aligned_cols=50 Identities=32% Similarity=0.633 Sum_probs=44.4
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|||.||..||.+|+... ...||+||..+...
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM---GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCHh
Confidence 456899999999999999999999999999999863 46899999998754
No 46
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=3.8e-10 Score=89.68 Aligned_cols=52 Identities=25% Similarity=0.611 Sum_probs=41.7
Q ss_pred cccccccccchhhh--hhhcccc-----hhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 199 YDDECAICREPMAK--AKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 199 ~~~~C~ICl~~~~~--~~~l~C~-----H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
.++.|.||++++++ ...+||+ |.||..||.+|+.... ..+||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeecCc
Confidence 45689999998853 4557997 9999999999998731 259999999987543
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.85 E-value=4.8e-10 Score=95.56 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=43.8
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|||.||..||.+|+... ...||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCHH
Confidence 345899999999999999999999999999999874 34999999988653
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=7.8e-10 Score=95.22 Aligned_cols=51 Identities=33% Similarity=0.677 Sum_probs=44.4
Q ss_pred ccccccccccchhhhh-------hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 198 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~-------~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
+.+..|+||++.+.++ +.++|||.||..|+.+|++. +.+||+||.++..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCChhc
Confidence 3456899999999886 67799999999999999998 689999999987543
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.82 E-value=7.2e-10 Score=89.09 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=43.6
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.|.+|+.++|||+|+..||.+|+.. +.+||+||.++..
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN----SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc----CCCCCCCcCCCCh
Confidence 34589999999999999999999999999999986 5899999998764
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.81 E-value=1.9e-09 Score=85.24 Aligned_cols=51 Identities=25% Similarity=0.491 Sum_probs=40.2
Q ss_pred cccccccccchhh--hhhhcc--cchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 199 YDDECAICREPMA--KAKKLL--CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 199 ~~~~C~ICl~~~~--~~~~l~--C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
.+.+|+||++.+. +...+| |||.||..|+..++... ...||.||+.+....
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~---~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE---NGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS---CSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC---CCCCCCCCCccCCCc
Confidence 4568999999884 334445 99999999999987543 579999999987543
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.79 E-value=8.9e-10 Score=91.34 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=43.6
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.|.+|+.++|||+||..||.+|+.. +.+||+||.++..
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN----SPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc----CCCCCCCCCCCCh
Confidence 34689999999999999999999999999999986 5899999998764
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.77 E-value=1.2e-09 Score=82.63 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=41.8
Q ss_pred ccccccccccchhhhhhhc--ccchh-hHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 198 AYDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l--~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
+.+..|+||++...++..+ ||||. ||..|+.+|.++ +..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhh
Confidence 4467899999998887766 99998 999999999877 579999999875
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.77 E-value=1.2e-09 Score=82.95 Aligned_cols=47 Identities=23% Similarity=0.556 Sum_probs=41.5
Q ss_pred cccccccccchhhhhhhc--ccchh-hHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 199 YDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l--~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.+..|+||++...+++.+ ||||. ||..|+.+|..+ +..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchh
Confidence 456899999999988866 99999 899999999987 579999999875
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.75 E-value=1.4e-09 Score=89.75 Aligned_cols=48 Identities=17% Similarity=0.038 Sum_probs=43.6
Q ss_pred cccccccccchhhhhhhcccc-hhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.|.+|+.++|| |.||..||.+|+.. +.+||+||.++..
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCCh
Confidence 345899999999999999999 99999999999987 5799999998864
No 55
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.8e-09 Score=84.37 Aligned_cols=54 Identities=19% Similarity=0.441 Sum_probs=42.6
Q ss_pred cccccccccchhhhhhh-cccchhhHHHHHHHHHhhcccccccCCCCCCcccccccC
Q 012963 199 YDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 254 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~-l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~~ 254 (452)
..++|+||++.+...++ ..|+|.||..||.+|++... ..+||+||.++..+.++
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCCCC
Confidence 34689999999975433 28999999999999998721 27999999998765443
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=1.9e-09 Score=109.32 Aligned_cols=48 Identities=33% Similarity=0.655 Sum_probs=43.2
Q ss_pred cccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 201 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
..|+||++.+.+++.+||||.||..|+.+|+... ...||+||.++...
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCEE
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC---CCCCCCCCCccCCc
Confidence 5899999999999999999999999999999842 58999999988654
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=3.1e-09 Score=102.97 Aligned_cols=49 Identities=16% Similarity=-0.026 Sum_probs=43.1
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
....|+||++.|.+|+.++|||+||..||..|+..+ ..+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC---CCCCcCCCCCCch
Confidence 345899999999999999999999999999999874 3459999998864
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=1e-09 Score=81.01 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=39.8
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|||.||..|+.+| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC-------CCCCCcCCcEeecC
Confidence 34589999999999999999999999999773 36899999988653
No 59
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.70 E-value=9.9e-10 Score=96.73 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=43.5
Q ss_pred ccccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 198 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
..+..|+||++.+.+++.++|||.||..||.+|+..+ ...||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG---PQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS---CEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC---CCCCCCCCCcccc
Confidence 3456899999999999999999999999999999863 4699999998643
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=2.7e-09 Score=90.67 Aligned_cols=46 Identities=24% Similarity=0.648 Sum_probs=41.2
Q ss_pred cccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.+++.+ +|||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 356899999999999999 9999999999999987 489999998753
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.61 E-value=3e-09 Score=83.05 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=39.2
Q ss_pred cccccccccchhhhhhhcccchh-hHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 34689999999999999999999 999999887 389999998764
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=1.1e-08 Score=83.64 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=41.3
Q ss_pred ccccccccchhhhhhhcc-cchhhHHHHHHHHHhhcc--cccccCCC--CCCc-cc
Q 012963 200 DDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGL--NEMYSCPT--CRKP-LF 249 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~-C~H~Fh~~Cl~~Wl~~~~--~~~~~CP~--CR~~-~~ 249 (452)
+..|+||++.|.+|+.++ |||+|+..||.+|+..+. ....+||+ |+.. +.
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 457999999999999996 999999999999998631 11359999 9876 54
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.55 E-value=1.4e-08 Score=92.57 Aligned_cols=48 Identities=17% Similarity=-0.017 Sum_probs=42.5
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
...||||++.|.+|+.++|||+||..||..|+..+ +.+||+||.++..
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhC---CCCCCCCcCCCCh
Confidence 45899999999999999999999999999999873 2479999998764
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.54 E-value=1.5e-08 Score=91.53 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=43.8
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.++|||.||..|+.+|+..+ ...||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC---CCCCCCCccCcchh
Confidence 345899999999999999999999999999999874 35999999988653
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.5e-08 Score=79.16 Aligned_cols=44 Identities=23% Similarity=0.521 Sum_probs=38.3
Q ss_pred cccccccccchhhhhhhcccchh-hHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.+++.+||||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA--------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH--------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC--------CCCCccCCceecC
Confidence 34589999999999999999999 99999953 4699999998854
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=3.2e-08 Score=76.00 Aligned_cols=46 Identities=22% Similarity=0.594 Sum_probs=39.7
Q ss_pred ccccccccccchhhhhhhcccchh-hHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 198 AYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
..+..|.||++...+++.+||+|. ||..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~--------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY--------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH--------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc--------CCCCCCCCcchhce
Confidence 456789999999999999999999 99999973 47999999988653
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.34 E-value=1.4e-07 Score=93.28 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=39.8
Q ss_pred cccccccccchhhhhh--------hcccchhhHHHHHHHHHhhccc-------ccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAK--------KLLCNHLFHLACLRSWLDQGLN-------EMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~--------~l~C~H~Fh~~Cl~~Wl~~~~~-------~~~~CP~CR~~~~~ 250 (452)
...+|+||++.+.+.. ...|+|.||..||.+|++.... ....||.||+++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4568999999887621 2479999999999999986311 02579999998864
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.29 E-value=5.6e-08 Score=76.86 Aligned_cols=45 Identities=24% Similarity=0.439 Sum_probs=38.9
Q ss_pred cccccccccchhhhhhhcccchh-hHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL--------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC--------SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc--------CcCCCCCchhhCe
Confidence 34589999999999999999999 999999764 4899999988653
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2e-07 Score=89.35 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=43.1
Q ss_pred cccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCC--CCCccccc
Q 012963 199 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPT--CRKPLFVG 251 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~--CR~~~~~~ 251 (452)
.+-.||||++.|.+|++. .|||+||+.||.+|+..+. ...||+ ||+.+...
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCchh
Confidence 346899999999999985 9999999999999997631 368999 99987653
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.25 E-value=1.7e-07 Score=70.37 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=43.2
Q ss_pred cccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCcccccc
Q 012963 201 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 252 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 252 (452)
..|+||++.|.+++.+ +|||+|.+.||.+|+.+ +.+||+++.++...+
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD----TGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCChhh
Confidence 4799999999999999 89999999999999987 468999999987654
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.25 E-value=2.4e-07 Score=69.31 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=38.8
Q ss_pred cccccccccchhhhhhhcccc--h---hhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 199 YDDECAICREPMAKAKKLLCN--H---LFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~--H---~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.+..|.||+++..++..+||. | .||..||.+|+.... +.+||+||..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 456899999986655567865 4 899999999997532 479999999764
No 72
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=5.2e-07 Score=73.39 Aligned_cols=48 Identities=23% Similarity=0.643 Sum_probs=38.2
Q ss_pred ccccccccchhhhhhhc---ccchhhHHHHHHHHHhhccc----ccccCCC--CCCc
Q 012963 200 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLN----EMYSCPT--CRKP 247 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~----~~~~CP~--CR~~ 247 (452)
..+|+||++.+..+..+ +|||.||..|+.+++..+.. ....||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45899999999877543 79999999999999875311 1358999 9998
No 73
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.10 E-value=2.2e-07 Score=93.32 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=39.4
Q ss_pred cccccccccchhhhhhhcccchh-hHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 45789999999999999999999 999999877 389999998854
No 74
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.72 E-value=6.4e-06 Score=67.02 Aligned_cols=47 Identities=26% Similarity=0.590 Sum_probs=38.2
Q ss_pred ccccccchhhh-hhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 202 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 202 ~C~ICl~~~~~-~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
.|.+|--++.. ++.+||+|+||.+|...|.+++ .++||.|+.++..-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeeeee
Confidence 47888777654 4567999999999999998664 58999999998653
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.15 E-value=0.00012 Score=69.71 Aligned_cols=52 Identities=19% Similarity=0.473 Sum_probs=40.5
Q ss_pred ccccccccchhhhhhhc-ccchhhHHHHHHHHHhhcccccccCCCCCCccccccc
Q 012963 200 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 253 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l-~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~ 253 (452)
-..|.||.+-...+++= .|+|.||..|+..|++... +..||.|+..+....+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCC
Confidence 45899999987655432 3999999999999997631 3599999999876544
No 76
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.00019 Score=54.43 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCChhhHHhhhhcc-cceeeeecccccC
Q 012963 414 LAMAETVREVLPHMPEDLIFQDLQRT-NSATITVNNLLQM 452 (452)
Q Consensus 414 ~~~~~~v~~~~p~~p~~~~~~~~~~~-~~~~~t~~~~l~~ 452 (452)
...++++++|||++...+|...|... |+||.||+.||+|
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34788999999999999999999885 5999999999974
No 77
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.18 E-value=0.0015 Score=49.79 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHhhhhc-ccceeeeeccccc
Q 012963 411 ANILAMAETVREVLPHMPEDLIFQDLQR-TNSATITVNNLLQ 451 (452)
Q Consensus 411 ~~~~~~~~~v~~~~p~~p~~~~~~~~~~-~~~~~~t~~~~l~ 451 (452)
..+..++.||+++||+.-..-|.+=|.. .++||.+|++|||
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 7899999999999999999999997777 4799999999998
No 78
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=95.34 E-value=0.005 Score=42.90 Aligned_cols=38 Identities=34% Similarity=0.512 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCChhhHHhhhhccc-ceeeeecccccC
Q 012963 415 AMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQM 452 (452)
Q Consensus 415 ~~~~~v~~~~p~~p~~~~~~~~~~~~-~~~~t~~~~l~~ 452 (452)
.++.|++.|++.-|.++|++.|+||+ .|...+||||-|
T Consensus 11 ~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 11 ELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 38899999999999999999999998 688889999864
No 79
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=94.83 E-value=0.00083 Score=57.73 Aligned_cols=86 Identities=7% Similarity=0.037 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcccccccCCCCCCccccccc-----CcccCCCCcccCchHHH-----HHHHhcccCC------CCCCC-C
Q 012963 224 LACLRSWLDQGLNEMYSCPTCRKPLFVGRR-----EIEANSRPGEVSSDEQL-----ARQLSMGLDR------QNNTG-Q 286 (452)
Q Consensus 224 ~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~g~~~------~~~~~-~ 286 (452)
.+|+.+|-+. .||.|+........ .......|.++...+++ |+.++|||+. .+|+. |
T Consensus 1 ~~~~~~W~~e------~~~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H 74 (129)
T 2g45_A 1 KQEVQAWDGE------VRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEH 74 (129)
T ss_dssp ----------------CCEECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHH
T ss_pred ChHHHhhcCC------CCCCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHH
Confidence 3688999754 56666665322111 11223467777776664 8999999986 56665 8
Q ss_pred cc-cCCCCCCCCCC--CCCCCCcccCCCCCcccc
Q 012963 287 TL-PTGVFPNQTQP--PVEGSPWRNAGLDSSWLH 317 (452)
Q Consensus 287 ~~-~~~~~p~~~~~--~~~~~~wd~aG~~~s~~~ 317 (452)
+. +.|.....+.. ++++++|.|+. +.||.
T Consensus 75 ~~~t~H~l~v~l~t~~~~~~~vwcY~c--d~~V~ 106 (129)
T 2g45_A 75 YRETGYPLAVKLGTITPDGADVYSYDE--DDMVL 106 (129)
T ss_dssp HHHHCCCEEEETTCCBTTBCCEEETTT--TEEEE
T ss_pred hhhcCCCEEEECCCCCCCCCeEEECCC--CCEeE
Confidence 77 88888886553 23489999998 88875
No 80
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=94.58 E-value=0.022 Score=41.03 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHhhhhc-ccceeeeecccccC
Q 012963 411 ANILAMAETVREVLPHMPEDLIFQDLQR-TNSATITVNNLLQM 452 (452)
Q Consensus 411 ~~~~~~~~~v~~~~p~~p~~~~~~~~~~-~~~~~~t~~~~l~~ 452 (452)
.+....++++++|||.+-.++|..=|.. -|.++.||+.+|+|
T Consensus 10 ~e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 5667789999999999999988775544 67899999999986
No 81
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=94.32 E-value=0.00096 Score=57.13 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=61.1
Q ss_pred hcccchhhHHHHHHHHHhhccc-ccccCCCCCCcccccccCcccCCCCcccCchHH-----HHHHHhcccCC-CCCCC-C
Q 012963 215 KLLCNHLFHLACLRSWLDQGLN-EMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQ-----LARQLSMGLDR-QNNTG-Q 286 (452)
Q Consensus 215 ~l~C~H~Fh~~Cl~~Wl~~~~~-~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~-~~~~~-~ 286 (452)
..+|.|+++..++..|-..-.+ ....|+.|+..-...+ ....++...++ .|+.++||++. .+|+. |
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~------~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H 77 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKD------KAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKH 77 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSC------SSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHH
T ss_pred CCCCcChhhccccccccccccCCCCCcCccccccccccc------cccccccccccceeeeeCCccccCCCCcchHHHHH
Confidence 4589999999998887643211 1257999977421110 01112222222 38899999984 56765 7
Q ss_pred cc----cCCCCCCCCCCCCCCCCcccCCCCCcccc
Q 012963 287 TL----PTGVFPNQTQPPVEGSPWRNAGLDSSWLH 317 (452)
Q Consensus 287 ~~----~~~~~p~~~~~~~~~~~wd~aG~~~s~~~ 317 (452)
+. +.|.+.+.++ +.++|.|+. +.||+
T Consensus 78 ~~~~~~t~H~l~~~l~---t~~vwCY~c--d~~V~ 107 (126)
T 2i50_A 78 YLTPRSEPHCLVLSLD---NWSVWCYVC--DNEVQ 107 (126)
T ss_dssp HHSCCSSCCCEEEETT---TCCEEETTT--TEEEC
T ss_pred HhCcCCCCCcEEEECC---CCeEEeCCC--CcEEE
Confidence 77 4788888877 778999999 99997
No 82
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=94.22 E-value=0.0031 Score=70.48 Aligned_cols=103 Identities=10% Similarity=0.091 Sum_probs=56.1
Q ss_pred ccchhhhh--hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccccc-----cCcccCCCCcccCchHHH-----HHH
Q 012963 206 CREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR-----REIEANSRPGEVSSDEQL-----ARQ 273 (452)
Q Consensus 206 Cl~~~~~~--~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~ 273 (452)
|++++... ..+.+.+.++..|+.+|-.. .||.|+....... ........|.+|...+++ |+.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~w~~~------~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~ 235 (854)
T 3ihp_A 162 VRDRVTSAVEALLSADSASRKQEVQAWDGE------VRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGS 235 (854)
T ss_dssp HHHHHHHHHHHHTC----------------------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCC
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhhcCc------cCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCC
Confidence 44444433 24578899999999999864 5888888643321 111233568888776664 999
Q ss_pred HhcccCC------CCCCC-Ccc-cCCCCCCCCCC--CCCCCCcccCCCCCccc
Q 012963 274 LSMGLDR------QNNTG-QTL-PTGVFPNQTQP--PVEGSPWRNAGLDSSWL 316 (452)
Q Consensus 274 ~~~g~~~------~~~~~-~~~-~~~~~p~~~~~--~~~~~~wd~aG~~~s~~ 316 (452)
++|||+. .+|+. |+. +.|.....+.. ++++.+|.|+. +.+|
T Consensus 236 vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~--~~~v 286 (854)
T 3ihp_A 236 ILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDE--DDMV 286 (854)
T ss_dssp EEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTT--TEEC
T ss_pred ccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCCCCCeEEEccC--CCee
Confidence 9999875 45665 777 88888886653 23489999997 7776
No 83
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.03 E-value=0.016 Score=42.80 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCChhhHHhhhhc-ccceeeeecccccC
Q 012963 415 AMAETVREVLPHMPEDLIFQDLQR-TNSATITVNNLLQM 452 (452)
Q Consensus 415 ~~~~~v~~~~p~~p~~~~~~~~~~-~~~~~~t~~~~l~~ 452 (452)
.-+++.++|||++...+|.+=|.. .|.||.||+.||+|
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 367899999999999999997766 67899999999985
No 84
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=92.52 E-value=0.023 Score=40.26 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCCChhhHHhhhhc-ccceeeeecccccC
Q 012963 416 MAETVREVLPHMPEDLIFQDLQR-TNSATITVNNLLQM 452 (452)
Q Consensus 416 ~~~~v~~~~p~~p~~~~~~~~~~-~~~~~~t~~~~l~~ 452 (452)
=+++.+||||.+....|+.=|.. -|.+|.+++-||+|
T Consensus 7 ~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 7 KLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 46778899999999999998887 78899999988864
No 85
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.82 E-value=0.036 Score=44.34 Aligned_cols=45 Identities=31% Similarity=0.602 Sum_probs=36.9
Q ss_pred cccccccchhhhhhhcccc-hhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 201 DECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
..|-.|+-..+ -.+.|+ |.+|..||...+.. +..||+|.++++..
T Consensus 29 ~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~----SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV----SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS----SSEETTTTEECCCC
T ss_pred ccChhhccccC--CeeeecchhhHHHHHHHHHhh----ccCCcccCCcCCcc
Confidence 47999986644 344665 99999999999988 79999999999764
No 86
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.84 E-value=0.036 Score=44.86 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=25.7
Q ss_pred ccccccccch-hhhhhh--cccchhhHHHHHHHH
Q 012963 200 DDECAICREP-MAKAKK--LLCNHLFHLACLRSW 230 (452)
Q Consensus 200 ~~~C~ICl~~-~~~~~~--l~C~H~Fh~~Cl~~W 230 (452)
+..|.||.+. +.++++ +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4579999976 566666 899999999999983
No 87
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=90.54 E-value=0.011 Score=49.09 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=44.2
Q ss_pred CCCcccCchHH-----HHHHHhcccCCCCCCC-Ccc-cCCCCCCCCCCCCCCCCcccCCCCCccccc
Q 012963 259 SRPGEVSSDEQ-----LARQLSMGLDRQNNTG-QTL-PTGVFPNQTQPPVEGSPWRNAGLDSSWLHA 318 (452)
Q Consensus 259 ~~~~~~~~~~~-----~~~~~~~g~~~~~~~~-~~~-~~~~~p~~~~~~~~~~~wd~aG~~~s~~~~ 318 (452)
..|.++...++ .|+.++|||+..+|+. |+. +.|...+.++ ++++|.|+. +.||++
T Consensus 25 ~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~---~~~vwCy~c--d~~V~~ 86 (109)
T 3c5k_A 25 QPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYI---DLSAWCYYC--QAYVHH 86 (109)
T ss_dssp CCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETT---TCCEEETTT--TEEBCC
T ss_pred CcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECC---CCCEEECCC--CCEEec
Confidence 34566655544 3888999999999887 888 9999999888 679999998 888874
No 88
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=87.40 E-value=0.12 Score=38.93 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=34.1
Q ss_pred cccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCCc
Q 012963 199 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 247 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 247 (452)
.+..|.||.+. ...| .|...||..|+...+.......-.||.|+..
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 45679999864 2233 6889999999988887644445799999764
No 89
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.22 E-value=0.16 Score=39.78 Aligned_cols=47 Identities=26% Similarity=0.617 Sum_probs=30.7
Q ss_pred ccccccccccchhhhhhhc---ccchhhHHHHHHHH------------HhhcccccccCCCCC
Q 012963 198 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSW------------LDQGLNEMYSCPTCR 245 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~W------------l~~~~~~~~~CP~CR 245 (452)
..|+.|.||- .+.....+ .|+-+||..||++- +..+....-+||.|.
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCcccCccc-cccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 4678999995 23333444 47899999999886 111122246899994
No 90
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=77.49 E-value=1.7 Score=48.68 Aligned_cols=48 Identities=15% Similarity=0.037 Sum_probs=42.6
Q ss_pred ccccccccchhhhhhhcccc-hhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 200 DDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
+..|||-.+-|.+|+.+|.| +.+-+.+|.+|+.. +.+||.=|.++...
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKLE 939 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCGG
T ss_pred HhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCcc
Confidence 34699999999999999998 58999999999987 57999999988653
No 91
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=71.91 E-value=0.2 Score=38.37 Aligned_cols=51 Identities=18% Similarity=0.423 Sum_probs=33.4
Q ss_pred cccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 199 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.+..|.+|...-.....+ .|.-.||..|+..-........-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 445799998764332233 578889999996544332223578999987654
No 92
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.67 E-value=1.3 Score=34.28 Aligned_cols=44 Identities=25% Similarity=0.543 Sum_probs=33.0
Q ss_pred cccccccchhhhhhhccc----chhhHHHHHHHHHhhcc-cccccCCCC
Q 012963 201 DECAICREPMAKAKKLLC----NHLFHLACLRSWLDQGL-NEMYSCPTC 244 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l~C----~H~Fh~~Cl~~Wl~~~~-~~~~~CP~C 244 (452)
-.|.+|.|.+++.-...| .|.||..|-+.-+++.. .....||.=
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 479999999998876666 59999999999887642 223456644
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.67 E-value=0.65 Score=32.56 Aligned_cols=45 Identities=36% Similarity=0.805 Sum_probs=29.4
Q ss_pred ccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 202 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
.|.||...-.....+ .|...||..|+..=+.......-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488887654333333 677889999997544432223567999975
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=68.45 E-value=0.32 Score=44.70 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=34.4
Q ss_pred ccccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 198 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
..++.|.+|...-+-...-.|...||..|+..-+.......-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 356789999865221111157889999999877665433457999998754
No 95
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=67.58 E-value=0.53 Score=34.57 Aligned_cols=45 Identities=27% Similarity=0.800 Sum_probs=31.7
Q ss_pred cccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 199 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
.+..|.+|.+. ...+ .|...||..|+..-+.......-.||.|++
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45689999874 2333 677889999998755443334678999965
No 96
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=65.82 E-value=0.32 Score=35.75 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=32.6
Q ss_pred ccccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 198 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
..+..|.+|.+. ...+ .|...||..|+..-+.......-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 346689999863 2233 57888999999865544333356899997654
No 97
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=64.70 E-value=0.84 Score=40.98 Aligned_cols=47 Identities=30% Similarity=0.620 Sum_probs=33.6
Q ss_pred cccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 199 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
.++.|.+|.+. ...+ .|.-.||..|+..-+.......-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45789999865 2233 57788999999876665333357899998754
No 98
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=62.19 E-value=0.24 Score=40.04 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=34.0
Q ss_pred HHHHhcccCCCCCCC-Ccc-cCCCCCCCCCCCCCCCCcccCCCCCccc
Q 012963 271 ARQLSMGLDRQNNTG-QTL-PTGVFPNQTQPPVEGSPWRNAGLDSSWL 316 (452)
Q Consensus 271 ~~~~~~g~~~~~~~~-~~~-~~~~~p~~~~~~~~~~~wd~aG~~~s~~ 316 (452)
|+.++||++..+|+. |+. +.|.+.+.++ ++++|.|+. +.++
T Consensus 46 Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~---~~~vwCy~c--dd~V 88 (97)
T 2uzg_A 46 CSYVGCGESQVDHSTIHSQETKHYLTVNLT---TLRVWCYAC--SKEV 88 (97)
T ss_dssp CCCEECCTTTTCHHHHHHHHTTCCEEEETT---TTEEEETTT--TEEE
T ss_pred CCCcccCCCcChHHHHHhhhcCCcEEEECC---CCCEEECCC--CcEe
Confidence 556788888788887 888 8999999988 679999998 7776
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=59.78 E-value=0.82 Score=41.42 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=31.8
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 247 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 247 (452)
++.|.+|.+.-+-...-.|...||..|+..=+.......-.||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 567999986532111225778899999976554332335689999875
No 100
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=57.12 E-value=1.2 Score=35.29 Aligned_cols=48 Identities=27% Similarity=0.600 Sum_probs=33.8
Q ss_pred ccccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 198 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
..++.|.+|... ...| .|.-.||..|+..=+..-....-.||.|+..-
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 456789999875 2334 56778999999776654333357899998653
No 101
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=54.77 E-value=0.93 Score=36.97 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=31.9
Q ss_pred HHHHhcccC-CCCCCC-Ccc-cCCC--CCCCCCCCCCCCCcccCCCCCccccc
Q 012963 271 ARQLSMGLD-RQNNTG-QTL-PTGV--FPNQTQPPVEGSPWRNAGLDSSWLHA 318 (452)
Q Consensus 271 ~~~~~~g~~-~~~~~~-~~~-~~~~--~p~~~~~~~~~~~wd~aG~~~s~~~~ 318 (452)
|+.++|+++ ..+|+. |+. +.|. ++++.+ +..+|.|+. ++||..
T Consensus 40 CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~---~~~vwcY~c--d~~V~~ 87 (102)
T 2ida_A 40 CGHVGCCDDSPHKHATRHFHATGHPIIEGYDPP---EGWGWCYVD--EVMFDL 87 (102)
T ss_dssp SCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSC---SCEEEETTT--TEEEEC
T ss_pred cCCCcccCCCccHHHHHHHhccCCCEEEEEecC---CCCEEEcCC--CcEEEC
Confidence 667788888 556665 777 8887 445443 678999999 999864
No 102
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=54.02 E-value=1.2 Score=36.53 Aligned_cols=47 Identities=23% Similarity=0.616 Sum_probs=31.2
Q ss_pred cccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCC
Q 012963 199 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCR 245 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 245 (452)
.++.|.||.+.-+....+ .|+..||..|+...........-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 567899998764432223 68899999999876542111246777775
No 103
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=48.36 E-value=1.3 Score=34.09 Aligned_cols=45 Identities=33% Similarity=0.742 Sum_probs=28.7
Q ss_pred ccccccchhhhhhhc---ccchhhHHHHHHHHHhhccccc-ccCCCCCC
Q 012963 202 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEM-YSCPTCRK 246 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~-~~CP~CR~ 246 (452)
.|.+|...-.....| .|...||..|+..-+....... -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455665544334444 5778899999987665433323 68999975
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=45.95 E-value=5 Score=34.61 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=32.8
Q ss_pred ccccccccccchhhhhhhcccchhhHHHHHHHHHhh-------cccccccCCCCCC
Q 012963 198 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ-------GLNEMYSCPTCRK 246 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~-------~~~~~~~CP~CR~ 246 (452)
..++.|.+|.+.-+-..--.|-..||..||..=+.. .....-.||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456789999876332111267889999999876531 1123568999975
No 105
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=43.63 E-value=2.3 Score=38.30 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=31.7
Q ss_pred ccccccccchhhhhh----hc---ccchhhHHHHHHHHH---hh--ccc--ccccCCCCCCcc
Q 012963 200 DDECAICREPMAKAK----KL---LCNHLFHLACLRSWL---DQ--GLN--EMYSCPTCRKPL 248 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~----~l---~C~H~Fh~~Cl~~Wl---~~--~~~--~~~~CP~CR~~~ 248 (452)
+..|+||...+.+.. .+ .|..-||..|+.-=- +. ..+ ....||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 457999998876543 23 678899999973211 00 001 147999998754
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=43.56 E-value=2.1 Score=35.27 Aligned_cols=45 Identities=29% Similarity=0.672 Sum_probs=30.1
Q ss_pred ccccccchhhh-hhhc---ccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 202 ECAICREPMAK-AKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 202 ~C~ICl~~~~~-~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
.|.+|.+.-.+ ...+ .|...||..|+..-+.......-.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788764222 2333 588999999997666543333568999975
No 107
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.00 E-value=0.38 Score=34.61 Aligned_cols=46 Identities=33% Similarity=0.832 Sum_probs=29.7
Q ss_pred ccccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 198 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
..+..|.+|.+. ...+ .|...||..|+..-+.......-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346689999875 2333 677889999997644432222456777743
No 108
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=42.40 E-value=2.4 Score=31.96 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=28.5
Q ss_pred ccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccc-cccCCCCCC
Q 012963 202 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 246 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~-~~~CP~CR~ 246 (452)
.|.+|...-.....| .|...||..|+..=+...... .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456776543333344 577899999998655443222 468999975
No 109
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=41.69 E-value=0.4 Score=35.00 Aligned_cols=47 Identities=32% Similarity=0.829 Sum_probs=31.5
Q ss_pred cccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 199 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
.+..|.+|... ...+ .|.-.||..|+..-+.......-.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45689999874 2333 67788999999765443322356788886644
No 110
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=39.84 E-value=0.87 Score=33.89 Aligned_cols=45 Identities=36% Similarity=0.801 Sum_probs=30.7
Q ss_pred cccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 199 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
.++.|.||.+. ...+ .|.-.||..|+..-+.......-.||.|+.
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 46789999864 2233 677889999997644432223567999965
No 111
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=38.68 E-value=10 Score=37.81 Aligned_cols=51 Identities=22% Similarity=0.437 Sum_probs=33.0
Q ss_pred ccccccccchhhhhhh-cccchhhHHHHHHHHHhhc-ccccccCCCCCCccccc
Q 012963 200 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~-l~C~H~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~~~~~ 251 (452)
.-.||+-...+..|.+ ..|.|.-|.+ +..|++.. ....-.||+|.+.+...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred eecCCCccccccccCcCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHH
Confidence 4579999888888755 5899983322 22333321 11258999999887554
No 112
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.89 E-value=25 Score=26.43 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCChhhHHhhhhc
Q 012963 415 AMAETVREVLPHMPEDLIFQDLQR 438 (452)
Q Consensus 415 ~~~~~v~~~~p~~p~~~~~~~~~~ 438 (452)
.|.+.+|.=||-||+++|-+=+.+
T Consensus 12 qvfheLkQrFPEvPd~VVsqc~~q 35 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRCMLQ 35 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHTT
T ss_pred HHHHHHHHhcccCcHHHHHHHHHH
Confidence 388999999999999999875554
No 113
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.76 E-value=1.4 Score=35.06 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=32.1
Q ss_pred cccccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCCc
Q 012963 199 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 247 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 247 (452)
.+..|.||...-.....+ .|...||..|+..=+.......-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 355799998875444444 5778899999975443322224679988653
No 114
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.59 E-value=1.1 Score=32.88 Aligned_cols=49 Identities=27% Similarity=0.625 Sum_probs=31.1
Q ss_pred cccccccccchhhhh-hhc---ccchhhHHHHHHHHHhhc-ccccccCCCCCCc
Q 012963 199 YDDECAICREPMAKA-KKL---LCNHLFHLACLRSWLDQG-LNEMYSCPTCRKP 247 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~-~~l---~C~H~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~ 247 (452)
.+..|++|.....+. ..+ .|..-||..|+.--.... ......||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345799998876432 222 678889999985432211 1236889999763
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.15 E-value=2.3 Score=32.76 Aligned_cols=45 Identities=31% Similarity=0.766 Sum_probs=29.5
Q ss_pred ccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccc-cccCCCCCC
Q 012963 202 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 246 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~-~~~CP~CR~ 246 (452)
.|.||...-.....| .|...||..|+..=+...... .-.||.|+.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678887643333334 677899999997655443222 468999975
No 116
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=35.68 E-value=12 Score=37.14 Aligned_cols=51 Identities=18% Similarity=0.397 Sum_probs=33.1
Q ss_pred ccccccccchhhhhhh-cccchhhHHHHHHHHHhhc-ccccccCCCCCCccccc
Q 012963 200 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~-l~C~H~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~~~~~ 251 (452)
.-.||+-...+..|.+ ..|.|.=|.+ +..|++.. ....-.||+|.+.+...
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCccceeccCCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHH
Confidence 3579999988887755 5899983221 23343322 11258999999987654
No 117
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=34.60 E-value=11 Score=30.20 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhhc
Q 012963 222 FHLACLRSWLDQG 234 (452)
Q Consensus 222 Fh~~Cl~~Wl~~~ 234 (452)
||..||.+|+...
T Consensus 43 FCRNCLskWy~~a 55 (105)
T 2o35_A 43 FCRNCLSNWYREA 55 (105)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999864
No 118
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=34.57 E-value=11 Score=30.14 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhhc
Q 012963 222 FHLACLRSWLDQG 234 (452)
Q Consensus 222 Fh~~Cl~~Wl~~~ 234 (452)
||..||.+|+...
T Consensus 42 FCRNCLskWy~~a 54 (104)
T 3fyb_A 42 FCRNCLAKWLMEA 54 (104)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999863
No 119
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=34.20 E-value=2.7 Score=39.11 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=26.0
Q ss_pred ccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccc-cccCCCCCC
Q 012963 202 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 246 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~-~~~CP~CR~ 246 (452)
.|.+|...-.....| .|...||..|+..=+...... .-.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577776543233333 677889999998655543222 357999975
No 120
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=34.04 E-value=12 Score=31.61 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=32.0
Q ss_pred ccccccccccchhhhhhhcccchhhHHHHHHHHH-----hhc--ccccccCCCCCCc
Q 012963 198 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWL-----DQG--LNEMYSCPTCRKP 247 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl-----~~~--~~~~~~CP~CR~~ 247 (452)
.+++.|.+|.+.-+-.---.|-..||..||..-+ .+- ....-.|+.|+..
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4566799998753211112678999999998752 111 1235799999654
No 121
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.22 E-value=1.1 Score=35.41 Aligned_cols=52 Identities=17% Similarity=0.546 Sum_probs=34.9
Q ss_pred cccccccccchhhh--hhhc---ccchhhHHHHHHHHHhh----cccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ----GLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~--~~~l---~C~H~Fh~~Cl~~Wl~~----~~~~~~~CP~CR~~~~~ 250 (452)
.+..|.+|...-.. ...| .|...||..|+..-+.. .....-.||.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 46789999876331 2233 68899999999876542 12225789999775543
No 122
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=28.87 E-value=4.5 Score=32.46 Aligned_cols=43 Identities=21% Similarity=0.573 Sum_probs=28.4
Q ss_pred ccccccchhhhhhhc---ccchhhHHHHHHHHHhhcccccccCCCCCC
Q 012963 202 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 246 (452)
Q Consensus 202 ~C~ICl~~~~~~~~l---~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 246 (452)
.| ||.........+ .|.-.||..|+..=... .+....||.|+.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~-~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH-IPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS-CCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC-CCCCEECCCCcC
Confidence 46 787665544444 57788999998653222 233689999974
No 123
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.26 E-value=36 Score=26.82 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=33.9
Q ss_pred ccccccccchhhhh----hh---cccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKA----KK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~----~~---l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
...|.||-++.... .. -.|+--.|+.|..-=.+.. ++.||.|+.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG---~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG---TQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS---CSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc---CccccccCCcccc
Confidence 46899999986432 12 2577678999986544443 7899999988753
No 124
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=27.74 E-value=1.6 Score=32.22 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=31.9
Q ss_pred cccccccccchhhh--hhhc---ccchhhHHHHHHHHHhhc---ccccccCCCCCCc
Q 012963 199 YDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQG---LNEMYSCPTCRKP 247 (452)
Q Consensus 199 ~~~~C~ICl~~~~~--~~~l---~C~H~Fh~~Cl~~Wl~~~---~~~~~~CP~CR~~ 247 (452)
.+..|.||...... ...+ .|.-.||..|+..-+... ....-.||.|+..
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45689999976422 3333 688889999997644321 1225689988654
No 125
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=27.29 E-value=13 Score=37.29 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred ccccccccchhhhhh----hcccchhhHHHHHHHHHhhcc---cccccCCCCCCc
Q 012963 200 DDECAICREPMAKAK----KLLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKP 247 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~----~l~C~H~Fh~~Cl~~Wl~~~~---~~~~~CP~CR~~ 247 (452)
...|.+|...|.... .-.||++||..|......... .....|-.|-..
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp -------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 357999999987432 238999999999876542211 113456666443
No 126
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=27.24 E-value=4.4 Score=28.44 Aligned_cols=44 Identities=25% Similarity=0.532 Sum_probs=25.9
Q ss_pred ccccccchhhhhh-hc----ccchhhHHHHHHHHHhhcccccccCCCCC
Q 012963 202 ECAICREPMAKAK-KL----LCNHLFHLACLRSWLDQGLNEMYSCPTCR 245 (452)
Q Consensus 202 ~C~ICl~~~~~~~-~l----~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 245 (452)
.|.+|..+..+.. .+ .|.--||..|+.--.....+....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4678877765432 22 46678999997432221111368999986
No 127
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=26.86 E-value=3.4 Score=33.66 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=30.5
Q ss_pred cccccccchhhhh-hhc----ccchhhHHHHHHHHH---hh---cccccccCCCCCCccc
Q 012963 201 DECAICREPMAKA-KKL----LCNHLFHLACLRSWL---DQ---GLNEMYSCPTCRKPLF 249 (452)
Q Consensus 201 ~~C~ICl~~~~~~-~~l----~C~H~Fh~~Cl~~Wl---~~---~~~~~~~CP~CR~~~~ 249 (452)
..|+||...+.+. ..+ .|.--||..|+.-=- +. .......||.|+..-.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4699999886432 222 577889999984211 10 1113689999987543
No 128
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.07 E-value=8 Score=29.90 Aligned_cols=40 Identities=15% Similarity=0.383 Sum_probs=30.9
Q ss_pred cccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 199 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 199 ~~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
....|+.|-+.+.......-+..||..|+ .|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEF------------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTC------------BCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccCC------------ccCCCCCCCCC
Confidence 34689999998865444567888999884 89999998864
No 129
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.71 E-value=8.6 Score=28.93 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=29.5
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
...|.-|-+.+.......-+..||..|. .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY------------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT------------SCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC------------eeCCCCCCCC
Confidence 4579999988776444466788999884 8999999875
No 130
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.22 E-value=12 Score=27.82 Aligned_cols=39 Identities=28% Similarity=0.523 Sum_probs=29.3
Q ss_pred ccccccccchhhhh-hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~-~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
.+.|+.|-+.+... ....-+..||..|. .|..|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF------------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCL------------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTC------------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCC------------CCCCCCCccCC
Confidence 45799999988743 33356788898884 89999998864
No 131
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.06 E-value=19 Score=30.07 Aligned_cols=29 Identities=17% Similarity=0.575 Sum_probs=22.1
Q ss_pred cccccccchhhhhhh----cccchhhHHHHHHH
Q 012963 201 DECAICREPMAKAKK----LLCNHLFHLACLRS 229 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~----l~C~H~Fh~~Cl~~ 229 (452)
..|.+|...|....+ -.||++||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 479999999875422 27999999999643
No 132
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.16 E-value=12 Score=27.15 Aligned_cols=38 Identities=26% Similarity=0.725 Sum_probs=28.3
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
...|+.|-+.+.......-+..||..|. .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKECF------------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTTS------------BCSSSCCBCT
T ss_pred CCCCcccCCeeccceEEECccccCCCCC------------ccCCCCCcCC
Confidence 3579999888765444456778888884 8999998875
No 133
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.07 E-value=12 Score=27.30 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=28.9
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 251 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 251 (452)
...|..|-+.+.......-+..||..|. .|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPECF------------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTTS------------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecceEEEECcccccccCC------------EeCCCCCcCCCC
Confidence 3579999888765444456778888884 899999887643
No 134
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.92 E-value=12 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.608 Sum_probs=28.0
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 249 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 249 (452)
.+.|+-|-+.+.......-+..||..|. .|..|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADCF------------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTTT------------BCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEEECccccccCcC------------EECCCCCCCC
Confidence 3579999888765433456778888884 8999998875
No 135
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=21.69 E-value=11 Score=27.02 Aligned_cols=39 Identities=23% Similarity=0.575 Sum_probs=28.5
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
...|+.|-+.+.......-+..||..|. .|..|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEHF------------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTTC------------BCTTTCCBCSS
T ss_pred CCCCcccCCEecceEEEECccccccCcC------------EECCCCCCCCC
Confidence 3579999888774333456778888884 89999988753
No 136
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=21.54 E-value=8.2 Score=31.56 Aligned_cols=48 Identities=25% Similarity=0.480 Sum_probs=31.1
Q ss_pred ccccccccccchhhhhhhc-----ccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 198 AYDDECAICREPMAKAKKL-----LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 198 ~~~~~C~ICl~~~~~~~~l-----~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
..++.|.+|.+. ...+ .|...||..|+. +.......-.||.|+..+..
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 356689999843 2233 366889999997 44433334679988765544
No 137
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.23 E-value=17 Score=23.41 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=7.2
Q ss_pred cccccccchhhhh
Q 012963 201 DECAICREPMAKA 213 (452)
Q Consensus 201 ~~C~ICl~~~~~~ 213 (452)
..||+|+..+..+
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 4566666555444
No 138
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.84 E-value=14 Score=28.39 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=30.0
Q ss_pred ccccccccchhhhhhhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
...|..|-+.+.......-+..||.+|. .|-.|+..+..
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECF------------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTC------------CCSSSCCCTTT
T ss_pred CCCcccCCCEecccEEEECCceECccCC------------EecCCCCCCCC
Confidence 4579999988776444457788999884 89999988864
No 139
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=20.51 E-value=14 Score=27.67 Aligned_cols=45 Identities=24% Similarity=0.669 Sum_probs=28.8
Q ss_pred ccccccccchhhhhhhc---c--cc-hhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 200 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 200 ~~~C~ICl~~~~~~~~l---~--C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
..-| ||..... ...+ . |. ..||..|+. +.......-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3457 8987532 2333 3 55 589999997 444333468999997643
No 140
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.51 E-value=14 Score=29.18 Aligned_cols=44 Identities=25% Similarity=0.689 Sum_probs=28.1
Q ss_pred cccccccchhhhhhhc---c--cc-hhhHHHHHHHHHhhcccccccCCCCCCcc
Q 012963 201 DECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKPL 248 (452)
Q Consensus 201 ~~C~ICl~~~~~~~~l---~--C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 248 (452)
.-| ||..... ...+ . |. ..||..|+. +.......-.||.|+..-
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 456 9987543 2333 3 55 579999996 333333468999998743
No 141
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.47 E-value=25 Score=21.58 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=10.0
Q ss_pred cccCCCCCCcccc
Q 012963 238 MYSCPTCRKPLFV 250 (452)
Q Consensus 238 ~~~CP~CR~~~~~ 250 (452)
...||+|+...+.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4689999987654
No 142
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.30 E-value=14 Score=26.87 Aligned_cols=39 Identities=26% Similarity=0.604 Sum_probs=28.7
Q ss_pred ccccccccchhhhh--hhcccchhhHHHHHHHHHhhcccccccCCCCCCcccc
Q 012963 200 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 250 (452)
Q Consensus 200 ~~~C~ICl~~~~~~--~~l~C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 250 (452)
...|..|-+.+... ....-+..||..|. .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF------------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCF------------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTC------------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEECccccCcccC------------eECCCCCcCCC
Confidence 45799999888742 33356788888884 89999888754
Done!