Query 012965
Match_columns 452
No_of_seqs 529 out of 1628
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 19:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 2.2E-31 7.5E-36 257.3 30.6 329 54-409 43-409 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.4E-30 1.2E-34 249.9 25.8 332 37-395 24-390 (451)
3 4gc0_A D-xylose-proton symport 100.0 1.3E-27 4.6E-32 234.3 25.0 339 38-395 9-414 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.6E-26 5.4E-31 226.7 28.1 315 67-395 49-430 (491)
5 2gfp_A EMRD, multidrug resista 99.9 8.4E-28 2.9E-32 227.4 10.8 312 50-395 13-334 (375)
6 2cfq_A Lactose permease; trans 99.9 1.6E-24 5.4E-29 207.7 10.4 351 48-429 18-395 (417)
7 2xut_A Proton/peptide symporte 99.9 3.6E-22 1.2E-26 197.3 21.3 167 42-216 17-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.1 2.1E-09 7.1E-14 103.5 17.9 152 57-216 272-431 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.1 1.2E-09 4.2E-14 106.4 14.5 156 249-424 15-187 (491)
10 3o7q_A L-fucose-proton symport 99.0 1.2E-08 4.2E-13 97.7 18.8 145 57-211 278-425 (438)
11 2cfq_A Lactose permease; trans 98.9 4E-09 1.4E-13 100.5 10.3 144 71-221 258-402 (417)
12 2xut_A Proton/peptide symporte 98.9 1.6E-08 5.4E-13 99.4 12.7 126 248-391 13-149 (524)
13 2gfp_A EMRD, multidrug resista 98.8 3.1E-08 1.1E-12 92.8 11.0 110 268-395 20-132 (375)
14 4gc0_A D-xylose-proton symport 98.7 1E-07 3.6E-12 92.7 11.8 166 57-227 297-471 (491)
15 2g9p_A Antimicrobial peptide l 35.2 4.6 0.00016 19.4 -0.8 13 92-104 3-15 (26)
16 2dw3_A Intrinsic membrane prot 20.7 96 0.0033 20.5 3.1 29 199-227 34-62 (77)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.2e-31 Score=257.34 Aligned_cols=329 Identities=13% Similarity=0.137 Sum_probs=226.5
Q ss_pred hhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HH---hcCccHHHHHH
Q 012965 54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMI 129 (452)
Q Consensus 54 ~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~---~~~~~~~~l~~ 129 (452)
....|.+|.+.+++|.|..+.|++.+...+...+++++.|+++||+|||+++..+.++.+++. ++ +++++++.+++
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 344888899999999999999999999999888999999999999999999999999999875 66 78999999999
Q ss_pred HHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCC-------------
Q 012965 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG------------- 196 (452)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~------------- 196 (452)
+|++.|++.+...+...+ ++.|..+++++....+ ..+ .+..+|..+++.+++.+.+.....
T Consensus 123 ~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~-~~~----~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANP-FVTVLGPESSGHFRLN-LAQ----TFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHSSCSTTHHHHHH-HHH----HHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHH
T ss_pred HHHHHHhhHHHhhhhHHH-HHHHHcCchhHHHHHH-HHH----HHHHHHHHHHHHHHHHHHhcccccccccccccCCcch
Confidence 999999999999988866 8888733333322111 222 234455566666666655222222
Q ss_pred -----------cchhhHHHHHHHHHHHHHHH-hccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhh
Q 012965 197 -----------PVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY 264 (452)
Q Consensus 197 -----------~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (452)
||+.|.+.+...++...+.. ...||+++++++++ ..++.++..++++|+|+++.......+......
T Consensus 197 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (438)
T 3o7q_A 197 LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA-KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT 275 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS-STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-cccchhhhHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 78888766655554443333 33455443321211 112334456678888888887766665555544
Q ss_pred hhhhhhcccc-ccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 012965 265 TFVFLWTPAL-SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPS 340 (452)
Q Consensus 265 ~~~~~~~p~~-~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (452)
. ...+.|.| .++..+.+. +.......++.+++.++.+++.||++||+ .+..+..+..+...........
T Consensus 276 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 348 (438)
T 3o7q_A 276 A-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--VLAAYALIAMALCLISAFAGGH---- 348 (438)
T ss_dssp H-HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHHHCCHH----
T ss_pred H-HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHcCCc----
Confidence 3 57888888 777666654 56677778889999999999999999887 3444444444443333322221
Q ss_pred CcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh-----hhHHHHHHHhcccc
Q 012965 341 NVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP-----LNIFVCVVLYNVDA 409 (452)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-----~~~~~~~~l~~~~~ 409 (452)
.......+.+++.+..+|..+++..|.+|++ ++++.++.... .++.+.+.+.+..+
T Consensus 349 ------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 349 ------------VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp ------------HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345557788888888999999999999977 67666554432 33344555555544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=3.4e-30 Score=249.91 Aligned_cols=332 Identities=11% Similarity=0.080 Sum_probs=226.7
Q ss_pred hhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHH
Q 012965 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (452)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (452)
+.++..+....+..+...+. .+.+|.+.+++ .+..+.|++.+...+...++++++|+++||+|||+++..+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 33444444444444444333 78888888999 99999999999999988899999999999999999999999999
Q ss_pred HHHH-HHhc----CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012965 113 ILSC-ITKH----SPQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGL 184 (452)
Q Consensus 113 ~i~~-l~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~ 184 (452)
+++. ++++ ++|++.++++|+++|++.+...+...+ ++.|.. +|++..+. .. .+..+|..+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~----~~----~~~~~g~~~g~~ 173 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSV----WN----CAHNVGGGIPPL 173 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHHH----HH----HHHHHHHTSHHH
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH-HHHHHCCchhhhHHHHH----HH----HHHHHHHHHHHH
Confidence 9986 6688 899999999999999999999988866 888873 33333332 22 234455555556
Q ss_pred hhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCC-----cc-hh-------H---HHHHHH-hhHHhhcch
Q 012965 185 FGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS-----ES-KD-------L---LTQFRG-AAVAIASDE 247 (452)
Q Consensus 185 l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~-------~---~~~~~~-~~~~~~~~~ 247 (452)
+++.+.+..+ +||..|++.+++.++..++.....||++++.+ +. ++ . ..+.++ ..++.++++
T Consensus 174 ~~~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (451)
T 1pw4_A 174 LFLLGMAWFN-DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNK 252 (451)
T ss_dssp HHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCH
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCH
Confidence 6655554333 16777888777666655554444555432210 00 00 0 000001 134567788
Q ss_pred hHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccC--CCCchhHHHHHHHH
Q 012965 248 KIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRVESYMQIVFVV 322 (452)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~ 322 (452)
+++...+...+.....+. ...+.|.+.++..+.+. +.......++.+++.++.+++.||+ +||+ .+..+..+
T Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--~~~~~~~~ 329 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--ATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hHHHHHHH
Confidence 888777666666655444 57889999988777655 5677777889999999999999999 7776 23333333
Q ss_pred HH-HHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965 323 SS-VSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (452)
Q Consensus 323 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (452)
.. +.+.... ...+ . ..+......++.|++.+...+..+.+..|.+|++.|++++|+.+..
T Consensus 330 ~~~~~~~~~~---~~~~------~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 390 (451)
T 1pw4_A 330 LVTIATIVYW---MNPA------G----NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 390 (451)
T ss_dssp HHHHHHHHTT---SCCT------T----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---Hhcc------c----CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence 33 2222211 1100 0 1135566677788888888888899999999999999999887764
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=1.3e-27 Score=234.31 Aligned_cols=339 Identities=14% Similarity=0.079 Sum_probs=196.2
Q ss_pred hhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCC--------cchhHHHHHHHHhhhhhccccccccccccCcchHH
Q 012965 38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC 105 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s--------~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l 105 (452)
+.+.+.++..+..+.+++| ++.+|.+.++++.+ ..+.|++.+..+++..++++++|+++||+|||+++
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3333434444444445554 55667777666332 33456777777777778888999999999999999
Q ss_pred HHHHHHHHHHH-HHh------------------cCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcc---cccchhhHH
Q 012965 106 VTYCLTYILSC-ITK------------------HSPQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWL 163 (452)
Q Consensus 106 ~~~~~~~~i~~-l~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~---~r~~~~~~~ 163 (452)
..+.+++.++. +++ +++|++.++++|+++|++.|...+.... +++|.. +|++..+.
T Consensus 89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~-~i~E~~p~~~rg~~~~~- 166 (491)
T 4gc0_A 89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM-YIAELAPAHIRGKLVSF- 166 (491)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSCGGGHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCHHhhhhhHHh-
Confidence 99999999875 556 4789999999999999999999998855 999984 34443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh--cccCCCcchhhHHHHHHHHHHHHHHHhccccccC------CCCcchhHHHH
Q 012965 164 SITFSKAIFLGNGLVAILSGLFGNLLV--DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG------DPSESKDLLTQ 235 (452)
Q Consensus 164 ~~~~~~~~~~g~~ig~~~~~~l~~~l~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 235 (452)
.+.....|...+..++........ ....+.||..+....+..++..... ...||.++ +++++++..++
T Consensus 167 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 167 ---NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred ---hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHH
Confidence 232333333333333222221110 0112456766666655555444333 36677432 22221111111
Q ss_pred HHH----------------------hhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch--HHHHHHHH
Q 012965 236 FRG----------------------AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATFM 291 (452)
Q Consensus 236 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~ 291 (452)
... ......+.++.........+.+...+.....|.|.+.++....+. ........
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (491)
T 4gc0_A 243 IMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVG 322 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHH
Confidence 000 001112223333333444444444444455666665543322211 34445566
Q ss_pred HHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhch-hh
Q 012965 292 LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF-WP 370 (452)
Q Consensus 292 i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~ 370 (452)
+..+++.++.+++.||+|||+. +..+.....+++...........+ .+...+...++..+++.. .|
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~~--~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKPL--QIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSWGP 389 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHH--HHHHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHhhcCcch--hccchHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHhHHHH
Confidence 7889999999999999999983 444444444444443333222111 123333344444444433 37
Q ss_pred HHHHHHhhcCCcccccchhhhhhhh
Q 012965 371 SIMKMRSQYIPEEARSTIMNFFRIP 395 (452)
Q Consensus 371 ~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (452)
..+.+.+|.+|++.|+++.|+.+..
T Consensus 390 ~~~~~~~E~fPt~~R~~~~g~~~~~ 414 (491)
T 4gc0_A 390 VCWVLLSEIFPNAIRGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHSSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 7889999999999999999987654
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=1.6e-26 Score=226.70 Aligned_cols=315 Identities=16% Similarity=0.089 Sum_probs=194.3
Q ss_pred cCCCcchhHHHHHHHHhhhhhccccccccccc-cCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhh
Q 012965 67 YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSA 144 (452)
Q Consensus 67 ~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (452)
+|.|..+.|++.+...+...+++++.|+++|| +|||+++..+.++.+++. ++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999988888999999999999 899999999999999986 6789999999999999999999999888
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhcccc--
Q 012965 145 FESWLVAEHNK-RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE-- 221 (452)
Q Consensus 145 ~~~~~i~e~~~-r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-- 221 (452)
..+ ++.|..+ +.+..+......+ .+..+|..+++.+++.+.+. ++||..|.+.++..++..+......++
T Consensus 129 ~~~-~~~~~~~~~~~~r~~~~~~~~----~~~~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 129 VST-LVGTLYDEHDRRRDAGFSIFV----FGINLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp HHH-HHHHHSSSCTTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHcCcccccceeeehHHH----HHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 866 8888622 2211111111122 33445666666666666654 456777877765555444333311111
Q ss_pred -cc-CCCCc--chhHHHHHHHh---------------------------------------------h-------HHhhc
Q 012965 222 -NY-GDPSE--SKDLLTQFRGA---------------------------------------------A-------VAIAS 245 (452)
Q Consensus 222 -~~-~~~~~--~~~~~~~~~~~---------------------------------------------~-------~~~~~ 245 (452)
++ +++++ .++..++..+. . .+..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4aps_A 202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLR 281 (491)
T ss_dssp CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 11 11111 11111110000 0 00011
Q ss_pred chhHHHHHHHHHhhhchhhhhhhhhccccccCCCCC---chHHHHHHHHHHHHHHhHHHHHHhccCCCCchh---HHHHH
Q 012965 246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI---PHGFIFATFMLASMLGSSLASRLMARSPPRVES---YMQIV 319 (452)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~---~~~~~ 319 (452)
....+.......+.... +.....+.|.+.++..+. +.+.......+..+++.++.+++.||++||+.. .+..+
T Consensus 282 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 282 VVSYIPLFIAAVLFWAI-EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp CTTHHHHHHHHHHHHHH-HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 11122222222222222 222345556665543333 347777778888888999999999999988531 12233
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965 320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (452)
..+.++++...........++ .....+......++.+++.+...+..+++..|.+|++.|+++.|+.+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 430 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALYGTS------GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLS 430 (491)
T ss_dssp HHHHHHHHTTTHHHHHHCCCC------TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCC------CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444444433333322111100 0111235567778888999988899999999999999999999988765
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=8.4e-28 Score=227.38 Aligned_cols=312 Identities=13% Similarity=0.067 Sum_probs=220.6
Q ss_pred HHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHH
Q 012965 50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILM 128 (452)
Q Consensus 50 ~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~ 128 (452)
........|.+|.+.+++|.|+.+.|++.+...+...+++++.|+++||+|||+++..+..+.+++. +.++++|++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (375)
T 2gfp_A 13 QMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLI 92 (375)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3344555888889999999999999999999999888999999999999999999999999999876 668889999999
Q ss_pred HHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHH
Q 012965 129 IGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA 205 (452)
Q Consensus 129 ~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~ 205 (452)
+.|+++|++.+...+...+ ++.|. ++|++..+..+. +..+|..+++.+++.+.++ ++||..|.+.+
T Consensus 93 ~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~ 161 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMART-LPRDLYERTQLRHANSLLNM--------GILVSPLLAPLIGGLLDTM--WNWRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHTSSCCSHHHHHHH--------HHHHHHHHHHHHHHHSSCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHH-HHHHHCCHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHh--ccHHHHHHHHH
Confidence 9999999999999888866 77776 455665543322 3445556666666666643 35778888777
Q ss_pred HHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch--
Q 012965 206 CFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-- 283 (452)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-- 283 (452)
+..++..+......||++++++++++ .+++.++.+|+|+++.......+....... ...+.|.+.++..+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~ 236 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRPVDAPRTR----LLTSYKTLFGNSGFNCYLLMLIGGLAGIAA-FEACSGVLMGAVLGLSSMT 236 (375)
T ss_dssp HHHHHHHCCCCCSSCCCSTTTCCCCC----TTTCSTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccCCCCccccc----HHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHH
Confidence 76666554344456665544332211 123445667778877776666655555444 57889998877555544
Q ss_pred -HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHH-HHHHHH--HHHHHhhhcCCCCcCCCCcccchhhHHHHHH
Q 012965 284 -GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVV-SSVSLL--LPIVTSFLVAPSNVKSGGISFSGSLQLLGFC 359 (452)
Q Consensus 284 -~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (452)
+.......++.+++..+.+++.||.++ + ...+... ...... ........ ..+...+...
T Consensus 237 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 299 (375)
T 2gfp_A 237 VSILFILPIPAAFFGAWFAGRPNKRFST-L---MWQSVICCLLAGLLMWIPDWFGVM-------------NVWTLLVPAA 299 (375)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTTTHHHH-H---HHHHHHHHHHTSSSSSHHHHHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHhhhccc-------------cHHHHHHHHH
Confidence 566677778888899999999998865 2 2222222 111111 11111111 0134556777
Q ss_pred HHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965 360 TFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (452)
Q Consensus 360 ~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (452)
+.+++.+...+...++..|..| ++|+++.|+.+..
T Consensus 300 l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~ 334 (375)
T 2gfp_A 300 LFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL 334 (375)
T ss_dssp HHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence 8888999889999999999998 7899999988764
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=1.6e-24 Score=207.73 Aligned_cols=351 Identities=13% Similarity=0.071 Sum_probs=189.6
Q ss_pred HHHHhhhhhhhhHHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHH---HH-HhcCc
Q 012965 48 LMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS---CI-TKHSP 122 (452)
Q Consensus 48 ~~~~~~~~~~p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~---~l-~~~~~ 122 (452)
..........|++|... +++|.|+.+.|.+.+...+...++++++|+++||+||||++..+..+.++. .. ..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T 2cfq_A 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444467776654 569999999999999988888899999999999999999999988776542 11 12222
Q ss_pred cHH-HHHHHHHHHHhHhhhhhhhhhh---hhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCc
Q 012965 123 QYK-ILMIGRILGGIATSLLFSAFES---WLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP 197 (452)
Q Consensus 123 ~~~-~l~~~r~l~G~~~~~~~~~~~~---~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~ 197 (452)
... .+...+.+.|++.+...+...+ .+..|. ++++...+..+ .+..+|..++|.+++.+.+ ++|
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~g~~~~~~l~~~l~~---~~~ 166 (417)
T 2cfq_A 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR--------MFGCVGWALGASIVGIMFT---INN 166 (417)
T ss_dssp HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHS--------SSTTTHHHHHHHHHHHHHH---HCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHH--------HHHHHHHHHHHHHHHHHHH---hch
Confidence 111 1234455555444433332222 123322 22232222211 1233455566666666554 356
Q ss_pred chhhHHHHHHHHHHHHHHHhccccccCCC--Ccc--hhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccc
Q 012965 198 VAPFDAAACFLAIGMVIILSSWTENYGDP--SES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA 273 (452)
Q Consensus 198 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 273 (452)
+..|++.++..++.........||++++. +++ ++..+...++.++.+++|+++............ +.....+.|.
T Consensus 167 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 245 (417)
T 2cfq_A 167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-YDVFDQQFAN 245 (417)
T ss_dssp HHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHH-HHHHHHHHHH
Confidence 77777665554333333222223321110 110 000001112344567788877655443332222 2223445666
Q ss_pred cccCCCCCc---h---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCc
Q 012965 274 LSPNDEEIP---H---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGI 347 (452)
Q Consensus 274 ~~~~~~~~~---~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (452)
|..+..+.. . +.......++.+++.++.++++||+|||+. +..+..+.++..... ... ++
T Consensus 246 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--l~~~~~~~~~~~~~~---~~~--------~~- 311 (417)
T 2cfq_A 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA--LLLAGTIMSVRIIGS---SFA--------TS- 311 (417)
T ss_dssp HHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHHHHHH---TTC--------CS-
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH--HHHHHHHHHHHHHHH---HHh--------cc-
Confidence 554333321 1 455566667788899999999999998872 433443333332221 111 00
Q ss_pred ccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhh-hhh------hhHHHHHHHhccccCCchHHHHHHH
Q 012965 348 SFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF-RIP------LNIFVCVVLYNVDAFPITVMFGMCS 420 (452)
Q Consensus 348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~------~~~~~~~~l~~~~~~~~~~~~~~~~ 420 (452)
.+...+...+.+++.+...+..+.+..|.+|++.|+++.+.. +.. .++.+++.+.+. .++...+...+
T Consensus 312 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~--~g~~~~f~~~~ 386 (417)
T 2cfq_A 312 ---ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES--IGFQGAYLVLG 386 (417)
T ss_dssp ---HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH--SHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh--cCcHHHHHHHH
Confidence 023344445556666666677788999999999999988773 432 233444555554 23444555555
Q ss_pred HHHHHHHHH
Q 012965 421 IFLLVASVL 429 (452)
Q Consensus 421 ~~~~~~~~~ 429 (452)
++.++..+.
T Consensus 387 ~~~l~~~~~ 395 (417)
T 2cfq_A 387 LVALGFTLI 395 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=3.6e-22 Score=197.32 Aligned_cols=167 Identities=11% Similarity=0.165 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhhhhhhhhHH-HHHhhcC------CCcchhHHHHHHHHhhhhhcccccccccccc-CcchHHHHHHHHHH
Q 012965 42 YLLVYSLMMAGDWLQGPYVY-YLYSTYG------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYI 113 (452)
Q Consensus 42 ~~~~~~~~~~~~~~~~p~l~-~i~~~~g------~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~ 113 (452)
.....++.........+.++ .+.+++| .++.+.|++.+...+...+++++.|+++||+ |||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33333333344333334443 4557889 9999999999998888888999999999999 99999999999998
Q ss_pred HHH-HHhcCc-cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012965 114 LSC-ITKHSP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (452)
Q Consensus 114 i~~-l~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 188 (452)
++. ++++++ +++.+++.|++.|++.+...+...+ ++.|. ++|++..+..+. ...+..+|..+++.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~-----~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNKSLAQKAFDM-----FYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTTTHHHHHHHH-----HHHHHHHHHHHHHHTSTH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH-HHHHHcCccchHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 876 668888 9999999999999999999888866 78887 333333332111 223455666777777777
Q ss_pred hhcccCCCcchhhHHHHHHHHHHHHHHH
Q 012965 189 LVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (452)
Q Consensus 189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~ 216 (452)
+.+. ++|+..|.+.++..++..+...
T Consensus 171 l~~~--~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 171 LLKN--FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHT--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhcc--ccHHHHHHHHHHHHHHHHHHHH
Confidence 7653 4677888877766665544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.12 E-value=2.1e-09 Score=103.46 Aligned_cols=152 Identities=12% Similarity=0.023 Sum_probs=102.8
Q ss_pred hhhHHHHHhh-cCCCcchhHHHHHHHHhhhhhcccccccccccc--CcchHHHHHHHHHH-HHH-HHhcC--ccHHHHHH
Q 012965 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTYI-LSC-ITKHS--PQYKILMI 129 (452)
Q Consensus 57 ~p~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~--Grr~~l~~~~~~~~-i~~-l~~~~--~~~~~l~~ 129 (452)
..++|...++ +|.+..+.+.+.+...+...++.++.|++.||+ |||+.+..+..+.. ++. +..+. ++.+.+.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 4555666665 899999999888888887888888999999999 99999988887776 555 44554 47788888
Q ss_pred HHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhcccCCCcchhhHHHHHHH
Q 012965 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGL-VAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (452)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~i-g~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~ 208 (452)
..++.|++.+...+.... ++.|..+++.+.. ..+.... ...+ |..+++.+.+.+.+.. +++..|.+.+++.
T Consensus 352 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~----~~~~~~~-~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~ 423 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGL-HALELAPKKAAGT----AAGFTGL-FGYLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGS 423 (451)
T ss_dssp HHHHHHHHHTHHHHHHHH-HHHHTSCTTHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHSS--CSHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHH-HHHHHhchhhhhh----HHHHHHH-HHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHH
Confidence 889999988888776645 6677633222222 1121111 2234 5566666766666544 4566777766666
Q ss_pred HHHHHHHH
Q 012965 209 AIGMVIIL 216 (452)
Q Consensus 209 ~~~~~~~~ 216 (452)
++..+...
T Consensus 424 ~~~~~~~~ 431 (451)
T 1pw4_A 424 ILAVILLI 431 (451)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.08 E-value=1.2e-09 Score=106.40 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=99.5
Q ss_pred HHHHHHHHHhhhchhhhhhhhhccccccCC-----CCCch---HHHHHHHHHHHHHHhHHHHHHhcc-CCCCchhHHHHH
Q 012965 249 IALLGAIQSLFEGSMYTFVFLWTPALSPND-----EEIPH---GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIV 319 (452)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~~~~~ 319 (452)
.+.......+.....+. ...+.+.|.++. ++.+. +...+...++..++.++.|+++|| +|||+ .+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~--~~~~~ 91 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYG-MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP--AVFWG 91 (491)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH--HHHHH
Confidence 33333333333334333 456677776654 66655 677788889999999999999999 89988 35555
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc--ccchhhhhhhh--
Q 012965 320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNFFRIP-- 395 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~-- 395 (452)
..+..++........+. +...+..++.|++.+...+...+++.|.+|+++ |+++++..+..
T Consensus 92 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 156 (491)
T 4aps_A 92 GVLIMLGHIVLALPFGA---------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGIN 156 (491)
T ss_dssp HHHHHHHHHHHHSCCST---------------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHH
Confidence 55544444443221111 366777888999999999999999999999988 66677665543
Q ss_pred ----hhHHHHHHHhccccCCchHHHHHHHHHHH
Q 012965 396 ----LNIFVCVVLYNVDAFPITVMFGMCSIFLL 424 (452)
Q Consensus 396 ----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 424 (452)
.++.+++.+.+. .++...+...++..+
T Consensus 157 ~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 157 LGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMF 187 (491)
T ss_dssp HHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Confidence 233444555554 334444444444333
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.03 E-value=1.2e-08 Score=97.67 Aligned_cols=145 Identities=12% Similarity=-0.002 Sum_probs=97.7
Q ss_pred hhhHHHH-Hh-hcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHH
Q 012965 57 GPYVYYL-YS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (452)
Q Consensus 57 ~p~l~~i-~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l 133 (452)
...+|.. .+ .+|.+..+.+...+...+...++.++.|+++||+|||+.+..+.++.+++. +..+.++.+.+... ++
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 356 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TL 356 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HH
Confidence 3444555 54 459999999988888888788888899999999999999999998888876 55777777655444 88
Q ss_pred HHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHH
Q 012965 134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (452)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~ 211 (452)
.|++.+...+...+ +..|..++.+.. . .. ... ...+|..++|.+.+.+.+..+ +++..|.+.++..++.
T Consensus 357 ~g~~~~~~~~~~~~-~~~~~~~~~~~~--~---~~-~~~-~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 357 CSAFMSIQYPTIFS-LGIKNLGQDTKY--G---SS-FIV-MTIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHTTHHHHHHH-HHHSSCGGGHHH--H---HH-HHH-HTTHHHHHHHHHHHHHHHHHT-SSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhhccccccc--h---hh-HHH-HHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence 88998888887755 555552222111 1 11 111 233677777777777776554 1455666555444433
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.91 E-value=4e-09 Score=100.51 Aligned_cols=144 Identities=10% Similarity=0.030 Sum_probs=93.3
Q ss_pred cchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhh
Q 012965 71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWL 149 (452)
Q Consensus 71 ~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (452)
..+.+...+...+...++.++.|+++||+|||+++..+..+.+++. +.++.++.+.+++..++.+++.+...+.... +
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445666565555556667789999999999999998888887765 5577888888888888888887666555544 6
Q ss_pred hhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhcccc
Q 012965 150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE 221 (452)
Q Consensus 150 i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 221 (452)
++|..+.+.+.. ..+.....+..+|..++|.+++.+.+.. ++...|...+++.++..+......||
T Consensus 337 ~~~~~p~~~~g~----~~g~~~~~~~~lg~~~gp~l~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 337 ITSQFEVRFSAT----IYLVCFCFFKQLAMIFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCHHHHHH----HHHHHHTTTHHHHHHHHTHHHHTHHHHS--HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHCCHHHHHH----HHHHHHHHHHhHHHHHhhhhHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 777633332222 1221123334466677777777766533 45566777776666665554444444
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.86 E-value=1.6e-08 Score=99.43 Aligned_cols=126 Identities=10% Similarity=0.023 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhhhchhhhhhhhhccccccCCCC------Cch---HHHHHHHHHHHHHHhHHHHHHhccC-CCCchhHHH
Q 012965 248 KIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE------IPH---GFIFATFMLASMLGSSLASRLMARS-PPRVESYMQ 317 (452)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------~~~---~~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~~~~~ 317 (452)
+++.......+.....+. ...+.|.|+++..+ .+. +...+...++..++.++.|+++||+ |||+ .+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~--~~~ 89 (524)
T 2xut_A 13 QIPYIIASEACERFSFYG-MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN--TIL 89 (524)
T ss_dssp CCTHHHHHHHHHHHHHHH-HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHH
Confidence 444444444444444343 45666666655444 433 6778888899999999999999999 9988 344
Q ss_pred HHHHHHHHHHHHHHHHh-hhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhh
Q 012965 318 IVFVVSSVSLLLPIVTS-FLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF 391 (452)
Q Consensus 318 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 391 (452)
.+..+..++........ .. +..++..++.|++.+...+...+++.|.+|+++|++..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHSV---------------QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSCH---------------HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence 55444444444433322 11 3566778888999999999999999999999999766554
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.77 E-value=3.1e-08 Score=92.75 Aligned_cols=110 Identities=8% Similarity=0.073 Sum_probs=82.6
Q ss_pred hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (452)
Q Consensus 268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (452)
....|.+.+ +.+.+. +...+...++..++.++.|+++||+|||+. +..+.....+.........+.
T Consensus 20 ~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~-------- 88 (375)
T 2gfp_A 20 IPAIADMAR-DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV--ILVGMSIFMLATLVAVTTSSL-------- 88 (375)
T ss_dssp HHHHHHHHT-TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC--CHHHHHHHHHHHHHHHHHHHH--------
T ss_pred hhhhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHHHhccH--------
Confidence 444555444 345544 677788889999999999999999999984 555555555555544443333
Q ss_pred CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (452)
+...+..++.|++.+...+...++..|.+|+++|+++++..+..
T Consensus 89 -------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (375)
T 2gfp_A 89 -------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMG 132 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 46677788889999988999999999999999999999887764
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.67 E-value=1e-07 Score=92.65 Aligned_cols=166 Identities=14% Similarity=0.012 Sum_probs=91.2
Q ss_pred hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh----cCccHHHHHHHH
Q 012965 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK----HSPQYKILMIGR 131 (452)
Q Consensus 57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~----~~~~~~~l~~~r 131 (452)
..+.+.+.++.+.+..+.........+...+..++.+.+.||+|||+.++.+.....++. ..+ ...+.+..++.-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 344566777788777666555445555566777789999999999999998888777653 221 122222222222
Q ss_pred HHHHhHhhh-hhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHH
Q 012965 132 ILGGIATSL-LFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (452)
Q Consensus 132 ~l~G~~~~~-~~~~~~~~~i~e~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~ 207 (452)
.+...+.+. ..+.. ..+.+|.- .|+...+.. +....++..+++.+.|.+.........+++...|++.+++
T Consensus 377 ~~~~~~~~~~~~~~~-~~~~~E~fPt~~R~~~~g~~----~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVC-WVLLSEIFPNAIRGKALAIA----VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHTTTTHHH-HHHHHHSSCTTTHHHHHHHH----HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHH-HHHHHHhCCHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 222222222 22333 33678873 344433322 2122233334444444332211111223444667777777
Q ss_pred HHHHHHHHHhccccccCCCC
Q 012965 208 LAIGMVIILSSWTENYGDPS 227 (452)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~ 227 (452)
.++..++.++..||++++.-
T Consensus 452 ~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHHHHheecCCCCCCH
Confidence 77777777778999987653
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=35.16 E-value=4.6 Score=19.40 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=9.9
Q ss_pred ccccccccCcchH
Q 012965 92 VGSLADKQGRKRA 104 (452)
Q Consensus 92 ~G~l~Dr~Grr~~ 104 (452)
.|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778889998753
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=20.71 E-value=96 Score=20.45 Aligned_cols=29 Identities=3% Similarity=-0.183 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHhccccccCCCC
Q 012965 199 APFDAAACFLAIGMVIILSSWTENYGDPS 227 (452)
Q Consensus 199 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (452)
..+.+...+.++.+..+-..+||+.++.+
T Consensus 34 Av~f~~~~~~lv~l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 34 GGVFFGTLLLIGFFRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 34444444445555555567888665433
Done!