BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012967
         (452 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
           Complex With The Substrate Analogue Methyl
           Acetylphosphonate
 pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
           Complex With The Substrate Analogue Methyl
           Acetylphosphonate
 pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
           Complex With The Substrate Analogue Methyl
           Acetylphosphonate
 pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
           Complex With The Substrate Analogue Methyl
           Acetylphosphonate
 pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
           Kluyveromyces Lactis
 pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
           Kluyveromyces Lactis
 pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
           Kluyveromyces Lactis
 pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
           Kluyveromyces Lactis
          Length = 563

 Score = 28.5 bits (62), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 129 RGQKPLDPPARPKGDEREETATESLQ--LWTDSGESCPEGTVPIRRT 173
           +G KP+  P+ P+ +E    +T   Q  +WT  GE   EG V I  T
Sbjct: 342 KGYKPVPVPSEPEHNEAVADSTPLKQEWVWTQVGEFLREGDVVITET 388


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,949,631
Number of Sequences: 62578
Number of extensions: 579455
Number of successful extensions: 1075
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 6
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)