BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012967
         (452 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7NBM9|SYN_MYCGA Asparagine--tRNA ligase OS=Mycoplasma gallisepticum (strain R(low /
           passage 15 / clone 2)) GN=asnS PE=3 SV=2
          Length = 456

 Score = 35.4 bits (80), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 198 DSTGGGHEHAVVFVNGEQYYGAKASLNVWTPRVTDGYEFSLSQIWVISGSF----SHDLN 253
           DS G G    V+  N   Y+G KASL V      + Y     +++    +F    SH   
Sbjct: 167 DSEGAGESFEVISPNDPNYFGKKASLTVSGQFAAEAYAQGFKRVFTFGPTFRAEKSHTSK 226

Query: 254 TIEAGWQVSPEL 265
            +   W + PE+
Sbjct: 227 HLSEFWMIEPEV 238


>sp|P04711|CAPP1_MAIZE Phosphoenolpyruvate carboxylase 1 OS=Zea mays GN=PEP1 PE=1 SV=2
          Length = 970

 Score = 35.4 bits (80), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 18/132 (13%)

Query: 25  TQEHSTKMAAASVSVFPVFVSFLLVVSSLSPVMSISIPIVSDSGHRTPANQTFRPSKHMQ 84
           T+E +  + A+ VS      SF  +   L P + +    + D G +  A+ +      + 
Sbjct: 385 TRERARHLLASGVSEISAESSFTSIEEFLEP-LELCYKSLCDCGDKAIADGSL-----LD 438

Query: 85  KLKSVNAYLKKINKPAVKTIQSPDGDVIDCVLSHL------------QPAFDHPELRGQK 132
            L+ V  +   + K  ++       DVID + +HL            +  +   ELRG++
Sbjct: 439 LLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKR 498

Query: 133 PLDPPARPKGDE 144
           PL PP  P+ DE
Sbjct: 499 PLLPPDLPQTDE 510


>sp|P97820|M4K4_MOUSE Mitogen-activated protein kinase kinase kinase kinase 4 OS=Mus
           musculus GN=Map4k4 PE=1 SV=1
          Length = 1233

 Score = 32.7 bits (73), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 12/89 (13%)

Query: 121 PAFDHPELRGQKPLDPPARPKG-----DEREETATESLQLWT--DSGESCPEGTVPIRRT 173
           P F H  LR Q P  PP+R +G     D + E    + + W+  DS E  P   VP+R T
Sbjct: 562 PKFAHHHLRSQDPC-PPSRSEGLSQSSDSKSEVPEPTQKAWSRSDSDEVPPR--VPVRTT 618

Query: 174 TEKDIL--RASSIKRFGRKLRRHVRRDST 200
           +   +L  R S ++  G++  +  +R+ST
Sbjct: 619 SRSPVLSRRDSPLQGGGQQNSQAGQRNST 647


>sp|C5FSF3|SLX4_ARTOC Structure-specific endonuclease subunit SLX4 OS=Arthroderma otae
           (strain ATCC MYA-4605 / CBS 113480) GN=SLX4 PE=3 SV=1
          Length = 846

 Score = 32.3 bits (72), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 110 DVIDCVLSHLQPAFDHPELRGQKPLDPPARP--KGDEREETA 149
           D++DC  +H QPA D    + QK    PA+P  KG + E+TA
Sbjct: 113 DLVDCSRNHFQPAEDESTTQKQK-TRKPAKPSEKGQKSEKTA 153


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,341,666
Number of Sequences: 539616
Number of extensions: 8075736
Number of successful extensions: 16056
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 16051
Number of HSP's gapped (non-prelim): 11
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)