Query 012968
Match_columns 452
No_of_seqs 140 out of 364
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:10:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 9.6E-92 2.1E-96 688.8 1.1 396 19-449 7-407 (408)
2 PF03547 Mem_trans: Membrane t 100.0 3.7E-51 8.1E-56 421.1 7.4 384 23-442 2-385 (385)
3 COG0679 Predicted permeases [G 100.0 6E-32 1.3E-36 271.7 0.7 308 20-447 2-309 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.9 1.6E-29 3.5E-34 255.0 0.5 316 19-444 2-319 (321)
5 PRK09903 putative transporter 99.9 2.1E-28 4.7E-33 246.3 4.5 301 26-444 8-309 (314)
6 TIGR00841 bass bile acid trans 97.5 1.1E-05 2.4E-10 80.5 -1.9 109 332-447 13-122 (286)
7 COG0385 Predicted Na+-dependen 94.9 0.004 8.8E-08 62.7 -1.7 111 330-447 41-152 (319)
8 PF01758 SBF: Sodium Bile acid 92.9 0.0076 1.6E-07 56.3 -3.9 109 333-447 4-113 (187)
9 PF13593 DUF4137: SBF-like CPA 90.2 0.063 1.4E-06 54.4 -0.9 115 327-446 31-147 (313)
10 TIGR00832 acr3 arsenical-resis 87.0 0.092 2E-06 53.5 -2.3 106 336-447 52-158 (328)
11 TIGR00841 bass bile acid trans 83.1 0.35 7.5E-06 48.3 -0.2 141 18-175 132-276 (286)
12 COG0385 Predicted Na+-dependen 69.0 4.5 9.8E-05 41.1 3.2 58 69-130 210-267 (319)
13 TIGR00832 acr3 arsenical-resis 55.1 2.7 5.8E-05 42.9 -1.3 105 28-135 182-296 (328)
14 TIGR00783 ccs citrate carrier 23.3 86 0.0019 32.4 3.6 82 30-114 207-294 (347)
15 PF05684 DUF819: Protein of un 22.6 71 0.0015 33.3 2.9 78 30-110 28-109 (378)
16 TIGR03802 Asp_Ala_antiprt aspa 20.9 36 0.00078 37.4 0.3 148 23-182 8-187 (562)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.6e-92 Score=688.81 Aligned_cols=396 Identities=44% Similarity=0.777 Sum_probs=341.6
Q ss_pred hHHHhH--HhHHHHHHHHHHHHHhcCccccccchhHHHHHHHHHHHHHhhHhhhhccCCccccccceeeeeehhhHHHHH
Q 012968 19 NVLSAI--LPLLKLLSLTVIGLILAHPRQQMIPRATFRLLSKLVFALFLPCLIFTELGESVNWHNISHWWFIPVNVLVST 96 (452)
Q Consensus 19 ~i~~A~--~pVlkVlli~~~G~~lA~~r~gil~~~~~k~lS~lvv~vFlPcLiFskla~~lt~~~i~~~w~ipv~~~l~~ 96 (452)
+.-.|. +|++||++++++||++|+++.|++++|+||.+|++||++|+|||+|+|+|+++|.|+|.+||+||+|.++++
T Consensus 7 ~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~ 86 (408)
T KOG2722|consen 7 LLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTF 86 (408)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHH
Confidence 444555 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhheeeeeecCCcccceEEEEEeeccCCCcceeeeeeccccCCCCCCC--CCcCCcceeeeehhhHHHHHHHHHH
Q 012968 97 VIGFFLGCLVVIICRPPPELNRFAIVMTAFGNSGNLSLAIVSSVCHSNNSPFG--AHCHSRGVAYVSFAQWVSVILVYTL 174 (452)
Q Consensus 97 ~ig~~~g~l~~~i~~~P~~~~~~vl~a~~F~N~~sLPlali~sL~~~~~~~f~--~~~~~rG~aYi~i~~~l~~i~~ws~ 174 (452)
++|.++||+++|++|+|+++||++++||+|||+||||++++.|+|++++.||| |.|.+||++|++++|++|++++|+|
T Consensus 87 ~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty 166 (408)
T KOG2722|consen 87 IIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTY 166 (408)
T ss_pred HHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEE
Confidence 99999999999999999999999999999999999999999999999999999 6799999999999999999999999
Q ss_pred HHHhcCCccce-eeecccccceehhhhcccCCCcceeeeccCCCCccccccccCchhHHHHhhccccCCCCCCCCCCCCc
Q 012968 175 VYHMMEPPLEY-YEVVEEGEIMEEELAVNNDVSRPLLVEAEWPGIEDKETEHSKTPFIARIFNGITSLSQTNFPELDLSA 253 (452)
Q Consensus 175 g~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 253 (452)
+||++.++..+ .+..++.+.|.... +.+ .++.+++++++.+++++.+. +
T Consensus 167 ~Y~~~~~p~~~~~~~~~~~~Ve~~~~------~~~------~~s~e~~~~~~~k~~ll~~~------------------e 216 (408)
T KOG2722|consen 167 VYRMLLPPNLELMSALKESPVEALLE------SVP------QPSVESDEDSTCKTLLLASK------------------E 216 (408)
T ss_pred EeeeecCCchhhhhcCChhhhhhhhh------ccC------CCCccccccccccccccccc------------------c
Confidence 99999887531 11111111111100 000 12233344444444432210 0
Q ss_pred CCCCCCccccccccccceeeeEEeeeccCccccccCCchHHHHHHHHhhcccccceeeeccCCccccccchHHHhhccch
Q 012968 254 DGASNSPRALRCLAEPRVVRRIRIVAEQTPIQHILQPPTIASLLAIIIGTVPQLKAFFFGSDAPLSFITDSLEILGGAMV 333 (452)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pp~ia~~lgliiglIPpLr~~f~~~~~pL~~i~~~~~~lG~~~v 333 (452)
+.+. .....+.+.+++.+....+.+++++++||++|+++|+++|.|||||+++|++++|+++++|+++.+|+++|
T Consensus 217 n~~~-----~~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~I 291 (408)
T KOG2722|consen 217 NRNN-----QVVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAI 291 (408)
T ss_pred cCCC-----ceeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccc
Confidence 0000 00112233445555555556689999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCCCCCccceehhhhHHHHHHhhhccceeeEeeccccceeeeCCceeeeeeeecccChhHHHHHHhh
Q 012968 334 PSVMLVLGGMLAEGPNDSTLGCRTTIGIIVARLVVLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPSAILLGAIA 413 (452)
Q Consensus 334 Pl~llvLGa~La~~~~~~~~~~~~i~~~~~~Rlii~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~A~~~~~~a 413 (452)
|+++++||+||.+|+.++.++.++++++++.||+++|++|++++..|+|+|.++.|||+|+||++||+++|||+|++++|
T Consensus 292 P~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~it 371 (408)
T KOG2722|consen 292 PCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTIT 371 (408)
T ss_pred hhhhhhhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999878999999999999999999999999
Q ss_pred hcccccccchhHHHHHHHHHHHHhhhhhheeheecc
Q 012968 414 SLRGYAVKEASALLFWQHIFALFSLSLYIVVYFKLL 449 (452)
Q Consensus 414 ~~~~~~~~~~s~~l~~~Y~~~~itl~~~~~~~l~~l 449 (452)
|++|.+|+|||+++||+|+++.+++++|.++|+|++
T Consensus 372 qL~g~~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv 407 (408)
T KOG2722|consen 372 QLNGVAERECSVILFWTYAVASLSLTVWSVFFLWLV 407 (408)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999986
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.7e-51 Score=421.08 Aligned_cols=384 Identities=34% Similarity=0.565 Sum_probs=284.5
Q ss_pred hHHhHHHHHHHHHHHHHhcCccccccchhHHHHHHHHHHHHHhhHhhhhccCCccccccceeeeeehhhHHHHHHHHHHh
Q 012968 23 AILPLLKLLSLTVIGLILAHPRQQMIPRATFRLLSKLVFALFLPCLIFTELGESVNWHNISHWWFIPVNVLVSTVIGFFL 102 (452)
Q Consensus 23 A~~pVlkVlli~~~G~~lA~~r~gil~~~~~k~lS~lvv~vFlPcLiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~~ 102 (452)
++++++++++++++||+++ |.|+++++.+|.+|++++++++|||+|++++++.+.+++.++|++++++++.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeeeeecCCcccceEEEEEeeccCCCcceeeeeeccccCCCCCCCCCcCCcceeeeehhhHHHHHHHHHHHHHhcCCc
Q 012968 103 GCLVVIICRPPPELNRFAIVMTAFGNSGNLSLAIVSSVCHSNNSPFGAHCHSRGVAYVSFAQWVSVILVYTLVYHMMEPP 182 (452)
Q Consensus 103 g~l~~~i~~~P~~~~~~vl~a~~F~N~~sLPlali~sL~~~~~~~f~~~~~~rG~aYi~i~~~l~~i~~ws~g~~ll~~~ 182 (452)
+|++.|++|.|+++++.+..+|+|+|.+++|+.++++++.+ +|.+|++++.++++++.|++|+.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----------~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 148 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----------RGVAYAIIFDVVNNIILWSLGYFLLESR 148 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----------hhhhhehHHHHhhHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999742 8999999999999999999999999876
Q ss_pred cceeeecccccceehhhhcccCCCcceeeeccCCCCccccccccCchhHHHHhhccccCCCCCCCCCCCCcCCCCCCccc
Q 012968 183 LEYYEVVEEGEIMEEELAVNNDVSRPLLVEAEWPGIEDKETEHSKTPFIARIFNGITSLSQTNFPELDLSADGASNSPRA 262 (452)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 262 (452)
+++.+..++.+.+.++..+.+++++....+.+.+...+++.++++++... .+..+.+.++.. + ..+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~-~~~~~~- 217 (385)
T PF03547_consen 149 SEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSST------PSQSSASAPSSV---S-TSPSPS- 217 (385)
T ss_pred ccccccccccccccccccccccCCccccCCcccccccccccccCCccccc------ccccccccchhh---c-cCCccc-
Confidence 54222111111000000000000000000000000000000000000000 000000000000 0 000000
Q ss_pred cccccccceeeeEEeeeccCccccccCCchHHHHHHHHhhcccccceeeeccCCccccccchHHHhhccchhhHHHhhhc
Q 012968 263 LRCLAEPRVVRRIRIVAEQTPIQHILQPPTIASLLAIIIGTVPQLKAFFFGSDAPLSFITDSLEILGGAMVPSVMLVLGG 342 (452)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pp~ia~~lgliiglIPpLr~~f~~~~~pL~~i~~~~~~lG~~~vPl~llvLGa 342 (452)
..+....+.++..+....+..++.++|||++|+++|++++++|+++.++++ .++.++++++|++++|++|+++|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~ 292 (385)
T PF03547_consen 218 NSTGAEQKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGA 292 (385)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHH
Confidence 000000000010000001112578999999999999999999999999877 788999999999999999999999
Q ss_pred cccCCCCCCCccceehhhhHHHHHHhhhccceeeEeeccccceeeeCCceeeeeeeecccChhHHHHHHhhhcccccccc
Q 012968 343 MLAEGPNDSTLGCRTTIGIIVARLVVLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPSAILLGAIASLRGYAVKE 422 (452)
Q Consensus 343 ~La~~~~~~~~~~~~i~~~~~~Rlii~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~A~~~~~~a~~~~~~~~~ 422 (452)
+|++++.+...+++.....++.||+++|++++++++++. . |+....+++++.++|+|++..++|+.||.++++
T Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l-~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~ 365 (385)
T PF03547_consen 293 SLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLG------L-DGDMARVLILQAAMPTAINSFVIASLYGLDEEE 365 (385)
T ss_pred HHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC------C-CHHHHHHHHHhccCCchHHHHHHHHHhCCCHHH
Confidence 999987777788888888899999999999999887332 2 555677888899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhh
Q 012968 423 ASALLFWQHIFALFSLSLYI 442 (452)
Q Consensus 423 ~s~~l~~~Y~~~~itl~~~~ 442 (452)
++..++|+|+++++++|+|+
T Consensus 366 ~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 366 ASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999985
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.97 E-value=6e-32 Score=271.66 Aligned_cols=308 Identities=19% Similarity=0.297 Sum_probs=255.3
Q ss_pred HHHhHHhHHHHHHHHHHHHHhcCccccccchhHHHHHHHHHHHHHhhHhhhhccCCccccccceeeeeehhhHHHHHHHH
Q 012968 20 VLSAILPLLKLLSLTVIGLILAHPRQQMIPRATFRLLSKLVFALFLPCLIFTELGESVNWHNISHWWFIPVNVLVSTVIG 99 (452)
Q Consensus 20 i~~A~~pVlkVlli~~~G~~lA~~r~gil~~~~~k~lS~lvv~vFlPcLiFskla~~lt~~~i~~~w~ipv~~~l~~~ig 99 (452)
++..+.+++++++++++||+++ |.|+++++..|++|++++++.+|||+|++++++-..++ +++..+++..+.....+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 5677899999999999999999 99999999999999999999999999999999987666 77777888888888888
Q ss_pred HHhhheeeeeecCCcccceEEEEEeeccCCCcceeeeeeccccCCCCCCCCCcCCcceeeeehhhHHHHHHHHHHHHHhc
Q 012968 100 FFLGCLVVIICRPPPELNRFAIVMTAFGNSGNLSLAIVSSVCHSNNSPFGAHCHSRGVAYVSFAQWVSVILVYTLVYHMM 179 (452)
Q Consensus 100 ~~~g~l~~~i~~~P~~~~~~vl~a~~F~N~~sLPlali~sL~~~~~~~f~~~~~~rG~aYi~i~~~l~~i~~ws~g~~ll 179 (452)
++..++.+++++.++++++....+.+|+|++++++.+..++ -.++|++|.++|.+++++.+|++|+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-----------~G~~gl~~~~i~~~~~~~~~~~~g~~~l 147 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-----------FGEKGLAYAVIFLIIGLFLMFTLGVILL 147 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-----------cCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999996544333 5678999999999999999999998776
Q ss_pred CCccceeeecccccceehhhhcccCCCcceeeeccCCCCccccccccCchhHHHHhhccccCCCCCCCCCCCCcCCCCCC
Q 012968 180 EPPLEYYEVVEEGEIMEEELAVNNDVSRPLLVEAEWPGIEDKETEHSKTPFIARIFNGITSLSQTNFPELDLSADGASNS 259 (452)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 259 (452)
...++ +++ +
T Consensus 148 ~~~~~-----~~~---~--------------------------------------------------------------- 156 (311)
T COG0679 148 ARSGG-----GTN---K--------------------------------------------------------------- 156 (311)
T ss_pred HHhcC-----Cch---h---------------------------------------------------------------
Confidence 43211 000 0
Q ss_pred ccccccccccceeeeEEeeeccCccccccCCchHHHHHHHHhhcccccceeeeccCCccccccchHHHhhccchhhHHHh
Q 012968 260 PRALRCLAEPRVVRRIRIVAEQTPIQHILQPPTIASLLAIIIGTVPQLKAFFFGSDAPLSFITDSLEILGGAMVPSVMLV 339 (452)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pp~ia~~lgliiglIPpLr~~f~~~~~pL~~i~~~~~~lG~~~vPl~llv 339 (452)
. .++. ..+-+.||+++|.++|+++. +.+-..| .++.++++++|++++|++|++
T Consensus 157 -~---------~~~~--------~~~~~~nP~i~a~i~g~~~~--------~~~i~lP-~~~~~~~~~l~~a~~pl~li~ 209 (311)
T COG0679 157 -S---------LLSV--------LKKLLTNPLIIALILGLLLN--------LLGISLP-APLDTAVDLLASAASPLALIA 209 (311)
T ss_pred -H---------HHHH--------HHHHHhCcHHHHHHHHHHHH--------HcCCCCc-HHHHHHHHHHHHhhhhHHHHH
Confidence 0 0000 02567999999999999993 3333445 588999999999999999999
Q ss_pred hhccccCCCCCCCccceehhhhHHHHHHhhhccceeeEeeccccceeeeCCceeeeeeeecccChhHHHHHHhhhccccc
Q 012968 340 LGGMLAEGPNDSTLGCRTTIGIIVARLVVLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPSAILLGAIASLRGYA 419 (452)
Q Consensus 340 LGa~La~~~~~~~~~~~~i~~~~~~Rlii~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~A~~~~~~a~~~~~~ 419 (452)
+|..|+. ...++...+.++.....|+++.|++...+.+ +++. ++....+++++.++|+|.+...+|+.+|.+
T Consensus 210 lG~~L~~-~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~------~~~l-~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~ 281 (311)
T COG0679 210 LGLSLAF-LKLKGSKPPIILIALSLKLLLAPLVALLVAK------LLGL-SGLALQVLVLLSAMPTAVNAYVLARQYGGD 281 (311)
T ss_pred Hhhhcch-hhhccccchhHHHHHHHHHHHHHHHHHHHHH------HcCC-ChHHHHHHHHHhhCcHHhHHHHHHHHhCCC
Confidence 9999998 3445556677777777899999999998655 2223 333448999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhhhhheehee
Q 012968 420 VKEASALLFWQHIFALFSLSLYIVVYFK 447 (452)
Q Consensus 420 ~~~~s~~l~~~Y~~~~itl~~~~~~~l~ 447 (452)
++.++...+.|+.++++|+|.|..++.+
T Consensus 282 ~~laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 282 PRLAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998877665
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.95 E-value=1.6e-29 Score=255.02 Aligned_cols=316 Identities=19% Similarity=0.234 Sum_probs=242.2
Q ss_pred hHHHhHHhHHHHHHHHHHHHHh-cCccccccchhHHHHHHHHHHHHHhhHhhhhccCCccccccceeeeeehhhHHHHHH
Q 012968 19 NVLSAILPLLKLLSLTVIGLIL-AHPRQQMIPRATFRLLSKLVFALFLPCLIFTELGESVNWHNISHWWFIPVNVLVSTV 97 (452)
Q Consensus 19 ~i~~A~~pVlkVlli~~~G~~l-A~~r~gil~~~~~k~lS~lvv~vFlPcLiFskla~~lt~~~i~~~w~ipv~~~l~~~ 97 (452)
++|..+..++.++++.+.||++ . |.|+++++..|.+|++++++.+|||+|+.+++.-..+.....+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999 8 999999999999999999999999999999984333233444444444556667
Q ss_pred HHHHhhheeee-eecCCcccceEEEEEeeccCCCcceeeeeeccccCCCCCCCCCcCCcceeeeehhhHHHHHHHHHHHH
Q 012968 98 IGFFLGCLVVI-ICRPPPELNRFAIVMTAFGNSGNLSLAIVSSVCHSNNSPFGAHCHSRGVAYVSFAQWVSVILVYTLVY 176 (452)
Q Consensus 98 ig~~~g~l~~~-i~~~P~~~~~~vl~a~~F~N~~sLPlali~sL~~~~~~~f~~~~~~rG~aYi~i~~~l~~i~~ws~g~ 176 (452)
..++++|.+.| .+|.+++.++....+++|+|.+.+.+-+++++-. ++... +..|...+.....+..|+.|+
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G-------~~~~~-~~~~~~~~~~~~~~~~~~~~~ 151 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFG-------EEGAK-ILIAALFIDTGAVLMTIALGL 151 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhc-------ccchh-hhHHHHHHHhccchhHHHHHH
Confidence 77888999888 8888888888888999999999999999888853 22211 356666666666788899997
Q ss_pred HhcCCccceeeecccccceehhhhcccCCCcceeeeccCCCCccccccccCchhHHHHhhccccCCCCCCCCCCCCcCCC
Q 012968 177 HMMEPPLEYYEVVEEGEIMEEELAVNNDVSRPLLVEAEWPGIEDKETEHSKTPFIARIFNGITSLSQTNFPELDLSADGA 256 (452)
Q Consensus 177 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 256 (452)
.+.....+ + .++ +
T Consensus 152 ~~~~~~~~-----~---~~~------------------------------~----------------------------- 164 (321)
T TIGR00946 152 FLVSEDGA-----G---GEG------------------------------S----------------------------- 164 (321)
T ss_pred HHhccccc-----c---ccc------------------------------c-----------------------------
Confidence 55321100 0 000 0
Q ss_pred CCCccccccccccceeeeEEeeeccCccccccCCchHHHHHHHHhhcccccceeeeccCCccccccchHHHhhccchhhH
Q 012968 257 SNSPRALRCLAEPRVVRRIRIVAEQTPIQHILQPPTIASLLAIIIGTVPQLKAFFFGSDAPLSFITDSLEILGGAMVPSV 336 (452)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pp~ia~~lgliiglIPpLr~~f~~~~~pL~~i~~~~~~lG~~~vPl~ 336 (452)
.++. .+..++. -.+-+.||+++|.++|+++... +.+.| .++.++++++|++++|++
T Consensus 165 ---~~~~----~~~~~~~--------~~~~~~nP~iia~i~Gl~~~~~--------~i~lP-~~l~~~l~~lg~~~~pla 220 (321)
T TIGR00946 165 ---GEST----RLMLIFV--------WKKLIKFPPLWAPLLSVILSLV--------GFKMP-GLILKSISILSGATTPMA 220 (321)
T ss_pred ---chhH----HHHHHHH--------HHHHHhCCChHHHHHHHHHHHH--------hhcCc-HHHHHHHHHHHHHHHHHH
Confidence 0000 0000000 0245689999999999999443 44456 789999999999999999
Q ss_pred HHhhhccccCCCCCCCccceehhhhHHHHHHhhhccceeeEeeccccceeeeCCceeeeeeeecccChhHHHHHHhhhcc
Q 012968 337 MLVLGGMLAEGPNDSTLGCRTTIGIIVARLVVLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPSAILLGAIASLR 416 (452)
Q Consensus 337 llvLGa~La~~~~~~~~~~~~i~~~~~~Rlii~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~A~~~~~~a~~~ 416 (452)
|+++|..++... .+.+++.+...++.|+++.|++.+.+.. +++. |+...-+++++.++|+|.+...+|+.|
T Consensus 221 Ll~lG~~l~~~~--~~~~~~~~~~~~~~klil~P~i~~~~~~------~~~l-~~~~~~~~vl~aa~P~a~~~~i~A~~y 291 (321)
T TIGR00946 221 LFSLGLALSPRK--IKLGVRDAILALIVRFLVQPAVMAGISK------LIGL-RGLELSVAILQAALPGGAVAAVLATEY 291 (321)
T ss_pred HHHHHHhhChhh--hccChHHHHHHHHHHHHHHHHHHHHHHH------HhCC-ChHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 999999997532 2335577888899999999999977554 3444 677788999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhhee
Q 012968 417 GYAVKEASALLFWQHIFALFSLSLYIVV 444 (452)
Q Consensus 417 ~~~~~~~s~~l~~~Y~~~~itl~~~~~~ 444 (452)
|.++++++..++++++++++|+|+|+.+
T Consensus 292 ~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 292 EVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999764
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.94 E-value=2.1e-28 Score=246.26 Aligned_cols=301 Identities=17% Similarity=0.208 Sum_probs=230.6
Q ss_pred hHHHHHHHHHHHHHhcCccccccchhHHHHHHHHHHHHHhhHhhhhccCCccccccceeeeeehhhHHHHHHHHHHhhhe
Q 012968 26 PLLKLLSLTVIGLILAHPRQQMIPRATFRLLSKLVFALFLPCLIFTELGESVNWHNISHWWFIPVNVLVSTVIGFFLGCL 105 (452)
Q Consensus 26 pVlkVlli~~~G~~lA~~r~gil~~~~~k~lS~lvv~vFlPcLiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~~g~l 105 (452)
.++-++++.++||++. |.|++++|..|.+|++++++.+||++|+++.+. +.+++.+-|...+..++.+...++++|+
T Consensus 8 ~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (314)
T PRK09903 8 DLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSWF 84 (314)
T ss_pred HHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3566679999999999 999999999999999999999999999999864 5555553344567777777778888887
Q ss_pred eee-eecCCcccceEEEEEeeccCCCcceeeeeeccccCCCCCCCCCcCCcceeeeehhhHHHHHHHHHHHHHhcCCccc
Q 012968 106 VVI-ICRPPPELNRFAIVMTAFGNSGNLSLAIVSSVCHSNNSPFGAHCHSRGVAYVSFAQWVSVILVYTLVYHMMEPPLE 184 (452)
Q Consensus 106 ~~~-i~~~P~~~~~~vl~a~~F~N~~sLPlali~sL~~~~~~~f~~~~~~rG~aYi~i~~~l~~i~~ws~g~~ll~~~~~ 184 (452)
+.+ ..|.+++.++....+++++|.+.+-+-+++++- |++.. -|+.|..++ .+.+++.|+.|..+++..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~-------G~~~~-~~~~~a~~~-~~~~~~~~~~g~~~~~~~~~ 155 (314)
T PRK09903 85 GCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIY-------GDSVS-TGLVVAIIS-IIVNAITIPIGLYLLNPSSG 155 (314)
T ss_pred HHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHHc-------Cchhh-hhhHHHHHH-HHHHHHHHHHHHHHHccccc
Confidence 764 567666666667778899999999999988874 23321 145444443 45788999999777643211
Q ss_pred eeeecccccceehhhhcccCCCcceeeeccCCCCccccccccCchhHHHHhhccccCCCCCCCCCCCCcCCCCCCccccc
Q 012968 185 YYEVVEEGEIMEEELAVNNDVSRPLLVEAEWPGIEDKETEHSKTPFIARIFNGITSLSQTNFPELDLSADGASNSPRALR 264 (452)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 264 (452)
+ .++ ++
T Consensus 156 -----~---~~~----------------------------------------------------------------~~-- 161 (314)
T PRK09903 156 -----A---DGK----------------------------------------------------------------KN-- 161 (314)
T ss_pred -----c---ccc----------------------------------------------------------------cc--
Confidence 0 000 00
Q ss_pred cccccceeeeEEeeeccCccccccCCchHHHHHHHHhhcccccceeeeccCCccccccchHHHhhccchhhHHHhhhccc
Q 012968 265 CLAEPRVVRRIRIVAEQTPIQHILQPPTIASLLAIIIGTVPQLKAFFFGSDAPLSFITDSLEILGGAMVPSVMLVLGGML 344 (452)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~Pp~ia~~lgliiglIPpLr~~f~~~~~pL~~i~~~~~~lG~~~vPl~llvLGa~L 344 (452)
. .++.. ++-+.||+++|.++|+++ .+++-..| .++.++++++|++++|++|+.+|+.|
T Consensus 162 -~----~~~~l--------~~~~~nP~iia~~~gl~~--------~l~~i~lP-~~i~~~l~~lg~~~~PlaL~~iG~~L 219 (314)
T PRK09903 162 -S----NLSAL--------ISAAKEPVVWAPVLATIL--------VLVGVKIP-AAWDPTFNLIAKANSGVAVFAAGLTL 219 (314)
T ss_pred -h----HHHHH--------HHHHhchHHHHHHHHHHH--------HHcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 234789999999999998 55565556 89999999999999999999999999
Q ss_pred cCCCCCCCccceehhhhHHHHHHhhhccceeeEeeccccceeeeCCceeeeeeeecccChhHHHHHHhhhcccccccchh
Q 012968 345 AEGPNDSTLGCRTTIGIIVARLVVLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPSAILLGAIASLRGYAVKEAS 424 (452)
Q Consensus 345 a~~~~~~~~~~~~i~~~~~~Rlii~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~A~~~~~~a~~~~~~~~~~s 424 (452)
++.+.+ .. +......+.|+++.|++.+.+.. +.+. |+...-+++++.++|+|.+...+|+.||.+.+.++
T Consensus 220 ~~~~~~--~~-~~~~~~~~~Kli~~P~i~~~~~~------~~~l-~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa 289 (314)
T PRK09903 220 AAHKFE--FS-AEIAYNTFLKLILMPLALLLVGM------ACHL-NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGT 289 (314)
T ss_pred hhcccc--cc-HHHHHHHHHHHHHHHHHHHHHHH------HcCC-CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHH
Confidence 975432 22 34567788999999998865443 2343 66777899999999999999999999999988999
Q ss_pred HHHHHHHHHHHHhhhhhhee
Q 012968 425 ALLFWQHIFALFSLSLYIVV 444 (452)
Q Consensus 425 ~~l~~~Y~~~~itl~~~~~~ 444 (452)
+.++.+++++++|+|+|+.+
T Consensus 290 ~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 290 ASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.52 E-value=1.1e-05 Score=80.49 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=89.6
Q ss_pred chhhHHHhhhccccCCCCCCCc-cceehhhhHHHHHHhhhccceeeEeeccccceeeeCCceeeeeeeecccChhHHHHH
Q 012968 332 MVPSVMLVLGGMLAEGPNDSTL-GCRTTIGIIVARLVVLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPSAILLG 410 (452)
Q Consensus 332 ~vPl~llvLGa~La~~~~~~~~-~~~~i~~~~~~Rlii~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~A~~~~ 410 (452)
.+.+.|+.+|.++...+.++.. .++.+...++.|++++|++++.+.+ +++. ||.....+++..++|+|.+..
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~------~~~l-~~~~~~glvL~~~~P~~~~s~ 85 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAK------VFKL-PPELAVGVLIVGCCPGGTASN 85 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH------HhCC-CHHHHHHHHheeeCCCchHHH
Confidence 3677888999999865333333 3456667788899999999987654 3343 888999999999999999999
Q ss_pred HhhhcccccccchhHHHHHHHHHHHHhhhhhheehee
Q 012968 411 AIASLRGYAVKEASALLFWQHIFALFSLSLYIVVYFK 447 (452)
Q Consensus 411 ~~a~~~~~~~~~~s~~l~~~Y~~~~itl~~~~~~~l~ 447 (452)
.+|+++|.+.+..+.....+.+++++++|+|+.++..
T Consensus 86 v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 86 VFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888999999999999999999887764
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.92 E-value=0.004 Score=62.66 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=88.2
Q ss_pred ccchhhHHHhhhccccCCCCCCC-ccceehhhhHHHHHHhhhccceeeEeeccccceeeeCCceeeeeeeecccChhHHH
Q 012968 330 GAMVPSVMLVLGGMLAEGPNDST-LGCRTTIGIIVARLVVLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPSAIL 408 (452)
Q Consensus 330 ~~~vPl~llvLGa~La~~~~~~~-~~~~~i~~~~~~Rlii~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~A~~ 408 (452)
...+-++|+..|.+|.+.+.... ..|+......+.-++++|++++++.+ +.+. ||-+..=+++..|.|.+++
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~------~~~l-~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAK------LFPL-PPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH------HcCC-CHHHHHhHHheeeCCCchh
Confidence 45567788888988886543333 35677788899999999999999877 4444 6666677788899999999
Q ss_pred HHHhhhcccccccchhHHHHHHHHHHHHhhhhhheehee
Q 012968 409 LGAIASLRGYAVKEASALLFWQHIFALFSLSLYIVVYFK 447 (452)
Q Consensus 409 ~~~~a~~~~~~~~~~s~~l~~~Y~~~~itl~~~~~~~l~ 447 (452)
.-.+|++.+.+-..+-.....+.+++++.+|+++.+|+.
T Consensus 114 S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 114 SNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988999987666666677889999999999999988765
No 8
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=92.95 E-value=0.0076 Score=56.26 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=75.9
Q ss_pred hhhHHHhhhccccCCCCCCCc-cceehhhhHHHHHHhhhccceeeEeeccccceeeeCCceeeeeeeecccChhHHHHHH
Q 012968 333 VPSVMLVLGGMLAEGPNDSTL-GCRTTIGIIVARLVVLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPSAILLGA 411 (452)
Q Consensus 333 vPl~llvLGa~La~~~~~~~~-~~~~i~~~~~~Rlii~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~A~~~~~ 411 (452)
+-+.|+..|.++.-.+..+.. ..|.++...+..++++|++++++... +.+ +||-+..-+++..++|.|.....
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~-----~~~-~~~~~~~Gl~l~~~~P~~~~s~~ 77 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWL-----LLP-LSPALALGLLLVAACPGGPASNV 77 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-H-----HTT---HHHHHHHHHHHHS-B-THHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH-----Hhc-CCHHHHHHHHHHhcCCcHHHHHH
Confidence 345666777777543222222 34566777889999999999987731 233 47778889999999999999999
Q ss_pred hhhcccccccchhHHHHHHHHHHHHhhhhhheehee
Q 012968 412 IASLRGYAVKEASALLFWQHIFALFSLSLYIVVYFK 447 (452)
Q Consensus 412 ~a~~~~~~~~~~s~~l~~~Y~~~~itl~~~~~~~l~ 447 (452)
++.+.|.+..........+.+++++.+|++..++..
T Consensus 78 ~t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 78 FTYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 999987776677778899999999999999877653
No 9
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=90.23 E-value=0.063 Score=54.39 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=86.9
Q ss_pred HhhccchhhHHHhhhccccCCCCCC-CccceehhhhHHHHHHhhhccceeeEeeccccceeeeCCceeeeeeeecccChh
Q 012968 327 ILGGAMVPSVMLVLGGMLAEGPNDS-TLGCRTTIGIIVARLVVLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPS 405 (452)
Q Consensus 327 ~lG~~~vPl~llvLGa~La~~~~~~-~~~~~~i~~~~~~Rlii~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~ 405 (452)
+.....|.+..++-|.+|...+..+ -..||....+...-+++.|++++++...... + .|+-+..=+++..|+|+
T Consensus 31 ~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~--~---~~~~l~~Gl~~~~~lPt 105 (313)
T PF13593_consen 31 YVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPA--F---LPPELALGLLILACLPT 105 (313)
T ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--c---CCHHHHHHHHHHhhCCc
Confidence 4444558999999999997654333 3366777888899999999999987763321 2 24447777889999999
Q ss_pred HHHHH-HhhhcccccccchhHHHHHHHHHHHHhhhhhheehe
Q 012968 406 AILLG-AIASLRGYAVKEASALLFWQHIFALFSLSLYIVVYF 446 (452)
Q Consensus 406 A~~~~-~~a~~~~~~~~~~s~~l~~~Y~~~~itl~~~~~~~l 446 (452)
.++.+ .+|+..|.++..+...-..+.++.++.+|+|+.+|+
T Consensus 106 Tv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 106 TVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 98875 478887766555556677899999999999998887
No 10
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=87.00 E-value=0.092 Score=53.54 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=79.4
Q ss_pred HHHhhhccccCCCCCCCc-cceehhhhHHHHHHhhhccceeeEeeccccceeeeCCceeeeeeeecccChhHHHHHHhhh
Q 012968 336 VMLVLGGMLAEGPNDSTL-GCRTTIGIIVARLVVLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPSAILLGAIAS 414 (452)
Q Consensus 336 ~llvLGa~La~~~~~~~~-~~~~i~~~~~~Rlii~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~A~~~~~~a~ 414 (452)
.|+..|.++...+..+.+ .+|.+....+.-++++|++++++.+. +.+ ++|-+..=+++..|+|.+.....+|.
T Consensus 52 mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l-----~~~-~~p~l~~GliLv~~~Pgg~~S~v~T~ 125 (328)
T TIGR00832 52 MMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWL-----FLR-DLFEYIAGLILLGLARCIAMVFVWNQ 125 (328)
T ss_pred HHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH-----HcC-CCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 556666777643322222 45677888999999999999987651 123 36668888899999999998888899
Q ss_pred cccccccchhHHHHHHHHHHHHhhhhhheehee
Q 012968 415 LRGYAVKEASALLFWQHIFALFSLSLYIVVYFK 447 (452)
Q Consensus 415 ~~~~~~~~~s~~l~~~Y~~~~itl~~~~~~~l~ 447 (452)
+.+.+..........+.+++++++|.++.+|+.
T Consensus 126 lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~ 158 (328)
T TIGR00832 126 LAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLG 158 (328)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887666666666789999999999998877764
No 11
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=83.08 E-value=0.35 Score=48.33 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=82.7
Q ss_pred hhHHHhHHhHHHHHHHHHHHHHhcCccccccchhHHHH---HHHHHHHHHhhHhhhhccCCccccccc-eeeeeehhhHH
Q 012968 18 QNVLSAILPLLKLLSLTVIGLILAHPRQQMIPRATFRL---LSKLVFALFLPCLIFTELGESVNWHNI-SHWWFIPVNVL 93 (452)
Q Consensus 18 ~~i~~A~~pVlkVlli~~~G~~lA~~r~gil~~~~~k~---lS~lvv~vFlPcLiFskla~~lt~~~i-~~~w~ipv~~~ 93 (452)
.......+ ..-+++-...|.++. |.- ++ .+|. ++.+....+ =++++.-++.+. +++ .+.|.+-+..+
T Consensus 132 ~~~~i~~~-~~~v~vPl~lG~~~r--~~~--p~-~~~~~~~~~~~s~~~l-~liv~~~~~~~~--~~i~~~~~~~~~~~~ 202 (286)
T TIGR00841 132 PYLGIGLS-LVAVLIPVSIGMLVK--HKL--PQ-IAKIILKVGLISVFLL-SVIIAVVGGINV--ENLATIGPLLLLVGI 202 (286)
T ss_pred cHHHHHHH-HHHHHHHHHHHHHHH--HHh--HH-HHHHHHhCchHHHHHH-HHHHHHHHHhhH--HHHHHhhHHHHHHHH
Confidence 34445566 788888999999887 331 22 2222 222222211 133333333332 222 22334445567
Q ss_pred HHHHHHHHhhheeeeeecCCcccceEEEEEeeccCCCcceeeeeeccccCCCCCCCCCcCCcceeeeehhhHHHHHHHHH
Q 012968 94 VSTVIGFFLGCLVVIICRPPPELNRFAIVMTAFGNSGNLSLAIVSSVCHSNNSPFGAHCHSRGVAYVSFAQWVSVILVYT 173 (452)
Q Consensus 94 l~~~ig~~~g~l~~~i~~~P~~~~~~vl~a~~F~N~~sLPlali~sL~~~~~~~f~~~~~~rG~aYi~i~~~l~~i~~ws 173 (452)
+...+|+.+||++.|.+|.+++.+.-+...++.+|++ +-+++.++. |+++...-...|...+...+.++.+-
T Consensus 203 ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~~~a~~~~~~~v~~~~~~~~~a~~ 274 (286)
T TIGR00841 203 LLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSPEVAVPSAIFPLIYALFQLAFALL 274 (286)
T ss_pred HHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999998888889999999988 544443322 22333333445555666666655544
Q ss_pred HH
Q 012968 174 LV 175 (452)
Q Consensus 174 ~g 175 (452)
+.
T Consensus 275 ~~ 276 (286)
T TIGR00841 275 FL 276 (286)
T ss_pred HH
Confidence 43
No 12
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=68.97 E-value=4.5 Score=41.06 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=46.6
Q ss_pred hhhccCCccccccceeeeeehhhHHHHHHHHHHhhheeeeeecCCcccceEEEEEeeccCCC
Q 012968 69 IFTELGESVNWHNISHWWFIPVNVLVSTVIGFFLGCLVVIICRPPPELNRFAIVMTAFGNSG 130 (452)
Q Consensus 69 iFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~~g~l~~~i~~~P~~~~~~vl~a~~F~N~~ 130 (452)
.|+.-..++-+.++ .+-+..+++..+|+..||...|.++.++..+.-+..|++-+|++
T Consensus 210 ~~s~~~~~~~~~~~----~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~ 267 (319)
T COG0385 210 AFSAAVENGIWSGL----LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG 267 (319)
T ss_pred HHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH
Confidence 34444444444444 46677788999999999999999999999999999999999985
No 13
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=55.05 E-value=2.7 Score=42.91 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCccc-----cccchhHHHHHHHHHHHHHhhHhhhhccCCcccccccee----eeeehhhHHHHHHH
Q 012968 28 LKLLSLTVIGLILAHPRQ-----QMIPRATFRLLSKLVFALFLPCLIFTELGESVNWHNISH----WWFIPVNVLVSTVI 98 (452)
Q Consensus 28 lkVlli~~~G~~lA~~r~-----gil~~~~~k~lS~lvv~vFlPcLiFskla~~lt~~~i~~----~w~ipv~~~l~~~i 98 (452)
.-+++-...|.++.+... +...++.++.++.+.. +++=..+|...+.+- +.+.+ ++.+-+..++++.+
T Consensus 182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~--~~i~~~~~~i~~~~~~v~l~~~~ 258 (328)
T TIGR00832 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQG--ETIIELPLDIALIAIPLLIYFYI 258 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHH--HHHHhChHHHHHHHHHHHHHHHH
Confidence 445666677776652111 1111233333444433 222333444443332 22333 23333345688999
Q ss_pred HHHhhheeeeeecCCcccceEEEEEeeccCCC-cceee
Q 012968 99 GFFLGCLVVIICRPPPELNRFAIVMTAFGNSG-NLSLA 135 (452)
Q Consensus 99 g~~~g~l~~~i~~~P~~~~~~vl~a~~F~N~~-sLPla 135 (452)
++.+|+.+.|.+|.+++.+.-+..+++-+|++ .+++|
T Consensus 259 ~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA 296 (328)
T TIGR00832 259 MFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVA 296 (328)
T ss_pred HHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHH
Confidence 99999999999999999999999999999953 33433
No 14
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=23.30 E-value=86 Score=32.37 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCccccccchhHHHHHH---HHHHHHHhhHhhhhccC-Cccccccceeeeeehhh-HHHHHHHHHH-hh
Q 012968 30 LLSLTVIGLILAHPRQQMIPRATFRLLS---KLVFALFLPCLIFTELG-ESVNWHNISHWWFIPVN-VLVSTVIGFF-LG 103 (452)
Q Consensus 30 Vlli~~~G~~lA~~r~gil~~~~~k~lS---~lvv~vFlPcLiFskla-~~lt~~~i~~~w~ipv~-~~l~~~ig~~-~g 103 (452)
-..+...|.++. ..|+++++...+.+ |.+...+++.+++. ++ ...+++++.+.-=.|.. .++...+|+. .+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~g-iGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVG-VGVSYIDLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccccCCHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 356777888888 89999998776644 44455577766652 33 44788888775411222 2333334333 33
Q ss_pred heeeeeecCCc
Q 012968 104 CLVVIICRPPP 114 (452)
Q Consensus 104 ~l~~~i~~~P~ 114 (452)
+++.|+++.=+
T Consensus 284 ~lvGKllG~YP 294 (347)
T TIGR00783 284 AFLGKLMGMYP 294 (347)
T ss_pred HHHHHHhCCCh
Confidence 45666666633
No 15
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=22.57 E-value=71 Score=33.35 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCccccccchhHHHHHHHHHHHHHhhHhhhhccCCccccccceeeeeeh----hhHHHHHHHHHHhhhe
Q 012968 30 LLSLTVIGLILAHPRQQMIPRATFRLLSKLVFALFLPCLIFTELGESVNWHNISHWWFIP----VNVLVSTVIGFFLGCL 105 (452)
Q Consensus 30 Vlli~~~G~~lA~~r~gil~~~~~k~lS~lvv~vFlPcLiFskla~~lt~~~i~~~w~ip----v~~~l~~~ig~~~g~l 105 (452)
++++.+.|.+++ ..|++|.+....+.+.+.+.++|.-++==+ -+.+.+++.+...=. +...+.+.+|..+++.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlL-l~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~ 104 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLL-LSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFL 104 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHH-HHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999 899995555556777777777776555433 345666665554333 3335556666666666
Q ss_pred eeeee
Q 012968 106 VVIIC 110 (452)
Q Consensus 106 ~~~i~ 110 (452)
+.+-.
T Consensus 105 l~~~~ 109 (378)
T PF05684_consen 105 LFGGF 109 (378)
T ss_pred HHhhc
Confidence 54433
No 16
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=20.93 E-value=36 Score=37.44 Aligned_cols=148 Identities=15% Similarity=0.151 Sum_probs=82.2
Q ss_pred hHHhHHHHHHHHHHHHHhcCccccccchhHHHHHHHH-HHHHHhhHhhhhccCCccc-----------------------
Q 012968 23 AILPLLKLLSLTVIGLILAHPRQQMIPRATFRLLSKL-VFALFLPCLIFTELGESVN----------------------- 78 (452)
Q Consensus 23 A~~pVlkVlli~~~G~~lA~~r~gil~~~~~k~lS~l-vv~vFlPcLiFskla~~lt----------------------- 78 (452)
.-.|++=+.+++++||++. |..+ |++|-= +--++.=.|++..++.++.
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki------~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy~vG~~~Gp~F 79 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKF------GSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIFAIGYEVGPQF 79 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEE------eeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCHHH
Confidence 4578999999999999999 5433 111111 1111222333333333221
Q ss_pred ccccee-eeeehhhHHHHHHHHHHhhheeeeeecCCcccceEEEEEeeccCCCcceeeeeeccccCCCCCC------CCC
Q 012968 79 WHNISH-WWFIPVNVLVSTVIGFFLGCLVVIICRPPPELNRFAIVMTAFGNSGNLSLAIVSSVCHSNNSPF------GAH 151 (452)
Q Consensus 79 ~~~i~~-~w~ipv~~~l~~~ig~~~g~l~~~i~~~P~~~~~~vl~a~~F~N~~sLPlali~sL~~~~~~~f------~~~ 151 (452)
.+++++ =|..-+.+++...+|.++.|...++++.|...--++. |++.-|+-.|--| .+++.+.+.++- ..-
T Consensus 80 f~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~-aGalT~tp~l~aA-~~a~~~~~~~~~~~~~~~~~~ 157 (562)
T TIGR03802 80 FASLKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLA-AGGLTQSAVIGTA-GDAIEKLGLSPEQKTAYQGNV 157 (562)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-hchhhccHHHHHH-HHHHHhcCCCcchhhcccccc
Confidence 223444 2455566677888889999999999999987666643 6777777666554 444532110100 011
Q ss_pred cCCcceeeeehhhHHHHHHHHH-HHHHhcCCc
Q 012968 152 CHSRGVAYVSFAQWVSVILVYT-LVYHMMEPP 182 (452)
Q Consensus 152 ~~~rG~aYi~i~~~l~~i~~ws-~g~~ll~~~ 182 (452)
....+++|. |-.++.+++.. ...++++.+
T Consensus 158 avgYav~Yp--fGvig~i~~~~~~~p~l~~~~ 187 (562)
T TIGR03802 158 AVAYAVTYI--FGTIGVIIVLVNILPWLMGID 187 (562)
T ss_pred ceeeehhhh--hHHHHHHHHHHHHHHHHhCCC
Confidence 244555555 34577775433 345566544
Done!