Query 012968
Match_columns 452
No_of_seqs 140 out of 364
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 19:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.1 2.4E-05 8.1E-10 78.3 -3.6 138 289-446 18-156 (332)
2 3zux_A Transporter, ASBTNM; tr 9.3 17 0.00058 35.6 -4.3 46 90-136 232-277 (332)
3 1zcd_A Na(+)/H(+) antiporter 1 8.5 1.7E+02 0.0057 29.3 2.6 94 49-142 248-350 (388)
4 1q90_G Cytochrome B6F complex 6.4 1.8E+02 0.0062 18.9 1.0 10 296-305 6-15 (37)
5 2zjs_E Preprotein translocase 3.4 3.1E+02 0.011 19.4 0.7 23 428-450 27-49 (60)
6 1vf5_G Protein PET G; photosyn 2.9 2.2E+02 0.0074 18.6 -0.6 9 297-305 7-15 (37)
7 1g6e_A Antifungal protein; all 2.8 4.5E+02 0.015 19.6 0.9 13 124-136 24-36 (87)
8 2rrh_A VIP peptides; peptide h 2.6 9.5E+02 0.033 14.5 2.1 25 45-69 3-27 (29)
9 2d2p_A Pituitary adenylate cyc 2.5 1.2E+03 0.04 15.2 2.6 25 45-69 3-27 (39)
10 1pi7_A VPU protein, U ORF prot 2.2 7.4E+02 0.025 15.9 1.3 12 293-304 9-20 (36)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.10 E-value=2.4e-05 Score=78.33 Aligned_cols=138 Identities=10% Similarity=0.020 Sum_probs=103.6
Q ss_pred CCchHHHHHHHHhhcccccceeeeccCCccccccchHHHhhccchhhHHHhhhccccCCCCCCCc-cceehhhhHHHHHH
Q 012968 289 QPPTIASLLAIIIGTVPQLKAFFFGSDAPLSFITDSLEILGGAMVPSVMLVLGGMLAEGPNDSTL-GCRTTIGIIVARLV 367 (452)
Q Consensus 289 ~Pp~ia~~lgliiglIPpLr~~f~~~~~pL~~i~~~~~~lG~~~vPl~llvLGa~La~~~~~~~~-~~~~i~~~~~~Rli 367 (452)
++-.+..++++++|..=|= .. .++ +..-...+.+.|+..|.++...+..+.+ .++......+.+++
T Consensus 18 ~~~~l~i~~~~~lg~~~P~--------~~-~~~----~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v 84 (332)
T 3zux_A 18 KTFSLWAALFAAAAFFAPD--------TF-KWA----GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA 84 (332)
T ss_dssp HTHHHHHHHHHHHHHHCGG--------GT-GGG----GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcch--------hh-hhh----HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4557777777777654221 11 122 2233457889999999999864333322 34556677899999
Q ss_pred hhhccceeeEeeccccceeeeCCceeeeeeeecccChhHHHHHHhhhcccccccchhHHHHHHHHHHHHhhhhhheehe
Q 012968 368 VLPLIGIGIVALADKLHFLVEGDSMFIFVLLLQYSTPSAILLGAIASLRGYAVKEASALLFWQHIFALFSLSLYIVVYF 446 (452)
Q Consensus 368 i~P~i~i~iv~~~~k~~~~~~~Dpi~~fv~~l~~~~P~A~~~~~~a~~~~~~~~~~s~~l~~~Y~~~~itl~~~~~~~l 446 (452)
++|++++.+.+ +++ .||.+...+++..++|++.+...+|++.|.+...+......+.+++++++|+|+.+++
T Consensus 85 i~Pll~~~l~~------~~~-l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 85 IMPATAWCLSK------LLN-LPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHH------HTT-CCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HhC-CChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999998665 234 4888899999999999999988899999888788888899999999999999988775
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=9.30 E-value=17 Score=35.59 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHhhheeeeeecCCcccceEEEEEeeccCCCcceeee
Q 012968 90 VNVLVSTVIGFFLGCLVVIICRPPPELNRFAIVMTAFGNSGNLSLAI 136 (452)
Q Consensus 90 v~~~l~~~ig~~~g~l~~~i~~~P~~~~~~vl~a~~F~N~~sLPlal 136 (452)
+..++...+++++||.+.|.+|.+++.+.-+...|+.+|+ .+-+++
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~l 277 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAAL 277 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHH
Confidence 3457788999999999999999999888777777889998 344444
No 3
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=8.53 E-value=1.7e+02 Score=29.27 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHHHHhhHhhhhccCCccccc---ccee--eeeehhhHHHHHHHH-HHhhheeeeee--cCCcccce-E
Q 012968 49 PRATFRLLSKLVFALFLPCLIFTELGESVNWH---NISH--WWFIPVNVLVSTVIG-FFLGCLVVIIC--RPPPELNR-F 119 (452)
Q Consensus 49 ~~~~~k~lS~lvv~vFlPcLiFskla~~lt~~---~i~~--~w~ipv~~~l~~~ig-~~~g~l~~~i~--~~P~~~~~-~ 119 (452)
.++-.+.+...+..+++|-.-|.+.+-+++.+ .+.+ .|-+-+..++--.+| +..+|+..|+. +.|+..++ -
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 46677888999999999999999999999774 3322 122223334444445 33356666665 56664322 2
Q ss_pred EEEEeeccCCCcceeeeeecccc
Q 012968 120 AIVMTAFGNSGNLSLAIVSSVCH 142 (452)
Q Consensus 120 vl~a~~F~N~~sLPlali~sL~~ 142 (452)
....++-.|++-..=.++.+++-
T Consensus 328 ~~~vg~L~gigftmsL~Ia~laf 350 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASLAF 350 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHhccchHHHHHHHHHhc
Confidence 23344455655544344444443
No 4
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=6.38 E-value=1.8e+02 Score=18.94 Aligned_cols=10 Identities=50% Similarity=0.972 Sum_probs=5.6
Q ss_pred HHHHHhhccc
Q 012968 296 LLAIIIGTVP 305 (452)
Q Consensus 296 ~lgliiglIP 305 (452)
+.|+++|+||
T Consensus 6 L~GIVlGlip 15 (37)
T 1q90_G 6 LCGIVLGLVP 15 (37)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHhhHH
Confidence 4455555555
No 5
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=3.44 E-value=3.1e+02 Score=19.38 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhhhheeheeccc
Q 012968 428 FWQHIFALFSLSLYIVVYFKLLS 450 (452)
Q Consensus 428 ~~~Y~~~~itl~~~~~~~l~~l~ 450 (452)
.++|...++...+.+.+|++.++
T Consensus 27 ~~~~t~vViv~v~i~~~~~~~vD 49 (60)
T 2zjs_E 27 VVEGTQAILLFTLAFMVILGLYD 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556656666666666554
No 6
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=2.93 E-value=2.2e+02 Score=18.60 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.3
Q ss_pred HHHHhhccc
Q 012968 297 LAIIIGTVP 305 (452)
Q Consensus 297 lgliiglIP 305 (452)
.|+++|+||
T Consensus 7 ~GIVlGlip 15 (37)
T 1vf5_G 7 DGLVLGLVF 15 (37)
T ss_dssp --CHHHHHH
T ss_pred hhHHHhhHH
Confidence 344444444
No 7
>1g6e_A Antifungal protein; all-beta, two antiparallel beta-sheets, parallel beta- sandwich; NMR {Streptomyces tendae} SCOP: b.11.1.6 PDB: 1gh5_A
Probab=2.76 E-value=4.5e+02 Score=19.58 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=10.3
Q ss_pred eeccCCCcceeee
Q 012968 124 TAFGNSGNLSLAI 136 (452)
Q Consensus 124 ~~F~N~~sLPlal 136 (452)
-.|.|.+++|.|+
T Consensus 24 lcfanag~mpvai 36 (87)
T 1g6e_A 24 LCFANAGTMPVAI 36 (87)
T ss_dssp EEECSSCEECCCC
T ss_pred EEEecCCCceEEE
Confidence 3588899998876
No 8
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=2.60 E-value=9.5e+02 Score=14.50 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=20.7
Q ss_pred ccccchhHHHHHHHHHHHHHhhHhh
Q 012968 45 QQMIPRATFRLLSKLVFALFLPCLI 69 (452)
Q Consensus 45 ~gil~~~~~k~lS~lvv~vFlPcLi 69 (452)
-|+++.+-+|-+-++...=|+.+|+
T Consensus 3 dg~FTsdysk~l~~~~ak~fl~~l~ 27 (29)
T 2rrh_A 3 DAVFTDNYTRLRKQMAVKKYLNSIL 27 (29)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHh
Confidence 4778888888888888888888875
No 9
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=2.54 E-value=1.2e+03 Score=15.22 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=22.9
Q ss_pred ccccchhHHHHHHHHHHHHHhhHhh
Q 012968 45 QQMIPRATFRLLSKLVFALFLPCLI 69 (452)
Q Consensus 45 ~gil~~~~~k~lS~lvv~vFlPcLi 69 (452)
-|+++.+-+|-+-++...=|+.+|+
T Consensus 3 dg~FTs~yskyl~~~~ak~fl~~l~ 27 (39)
T 2d2p_A 3 DGIFTDSYSRYRKQMAVKKYLAAVL 27 (39)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHh
Confidence 4888999999999999999999998
No 10
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=2.21 E-value=7.4e+02 Score=15.92 Aligned_cols=12 Identities=50% Similarity=0.686 Sum_probs=5.1
Q ss_pred HHHHHHHHhhcc
Q 012968 293 IASLLAIIIGTV 304 (452)
Q Consensus 293 ia~~lgliiglI 304 (452)
+|.+++++++.+
T Consensus 9 valivalIiaIV 20 (36)
T 1pi7_A 9 VALVVAIIIAIV 20 (36)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
Done!