Query 012968
Match_columns 452
No_of_seqs 140 out of 364
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 19:43:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012968.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012968hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 6.4 88 0.0064 17.7 1.0 10 296-305 6-15 (30)
2 d2e74d2 f.23.12.1 (D:12-45) IS 4.7 35 0.0026 20.0 -1.5 28 285-312 5-32 (34)
3 d1jb0m_ f.23.19.1 (M:) Subunit 3.5 1.7E+02 0.013 16.5 0.9 13 295-307 8-20 (31)
4 d1ldda_ a.4.5.34 (A:) Anaphase 3.1 2.7E+02 0.019 19.2 1.8 11 427-437 8-18 (74)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 2.8 1.4E+02 0.011 16.5 0.0 19 157-175 4-22 (30)
6 d1g6ea_ b.11.1.6 (A:) Antifung 2.8 2.1E+02 0.015 19.6 0.9 13 124-136 24-36 (87)
7 d1p4ea1 a.60.9.1 (A:2-129) Flp 2.5 5.7E+02 0.041 18.1 3.1 37 401-437 7-45 (128)
8 d1jr8a_ a.24.15.1 (A:) Thiol o 2.2 1.3E+02 0.0092 22.1 -1.2 6 9-14 79-84 (105)
9 d1w1oa1 d.58.32.4 (A:246-534) 1.8 7.1E+02 0.052 21.3 3.3 37 370-406 182-220 (289)
10 d1tbaa_ a.15.1.1 (A:) TAF(II)2 1.5 2.5E+02 0.018 18.9 -0.4 13 47-59 37-49 (67)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.43 E-value=88 Score=17.75 Aligned_cols=10 Identities=50% Similarity=0.972 Sum_probs=6.4
Q ss_pred HHHHHhhccc
Q 012968 296 LLAIIIGTVP 305 (452)
Q Consensus 296 ~lgliiglIP 305 (452)
+.|++.|+||
T Consensus 6 l~GivlGlip 15 (30)
T d1q90g_ 6 LCGIVLGLVP 15 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHhhHH
Confidence 4566666666
No 2
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.72 E-value=35 Score=19.98 Aligned_cols=28 Identities=11% Similarity=0.394 Sum_probs=22.8
Q ss_pred ccccCCchHHHHHHHHhhcccccceeee
Q 012968 285 QHILQPPTIASLLAIIIGTVPQLKAFFF 312 (452)
Q Consensus 285 ~~~~~Pp~ia~~lgliiglIPpLr~~f~ 312 (452)
++|||=-+.+.+-|...|..-|+-+.|.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcC
Confidence 5688888999999999988777766664
No 3
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.47 E-value=1.7e+02 Score=16.51 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=8.4
Q ss_pred HHHHHHhhccccc
Q 012968 295 SLLAIIIGTVPQL 307 (452)
Q Consensus 295 ~~lgliiglIPpL 307 (452)
..++++|+++|-+
T Consensus 8 v~valvial~pg~ 20 (31)
T d1jb0m_ 8 VYVALVIALLPAV 20 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3566777777754
No 4
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.08 E-value=2.7e+02 Score=19.24 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=9.4
Q ss_pred HHHHHHHHHHh
Q 012968 427 LFWQHIFALFS 437 (452)
Q Consensus 427 l~~~Y~~~~it 437 (452)
.||+|+...+|
T Consensus 8 ~~w~yI~gMLt 18 (74)
T d1ldda_ 8 RSLPFIEGMLT 18 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 68999998876
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.82 E-value=1.4e+02 Score=16.53 Aligned_cols=19 Identities=11% Similarity=0.431 Sum_probs=12.3
Q ss_pred eeeeehhhHHHHHHHHHHH
Q 012968 157 VAYVSFAQWVSVILVYTLV 175 (452)
Q Consensus 157 ~aYi~i~~~l~~i~~ws~g 175 (452)
++|+.+|.-+-.+++|..=
T Consensus 4 i~yv~ifac~i~lfffaif 22 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 5788877766666666543
No 6
>d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces tendae, tu901 [TaxId: 1932]}
Probab=2.76 E-value=2.1e+02 Score=19.58 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=10.3
Q ss_pred eeccCCCcceeee
Q 012968 124 TAFGNSGNLSLAI 136 (452)
Q Consensus 124 ~~F~N~~sLPlal 136 (452)
-.|.|.+++|.|+
T Consensus 24 lcfanag~mpvai 36 (87)
T d1g6ea_ 24 LCFANAGTMPVAI 36 (87)
T ss_dssp EEECSSCEECCCC
T ss_pred EEEecCCCceEEE
Confidence 3588899998876
No 7
>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.48 E-value=5.7e+02 Score=18.13 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=23.5
Q ss_pred ccChhHHHHHHhhhccc--ccccchhHHHHHHHHHHHHh
Q 012968 401 YSTPSAILLGAIASLRG--YAVKEASALLFWQHIFALFS 437 (452)
Q Consensus 401 ~~~P~A~~~~~~a~~~~--~~~~~~s~~l~~~Y~~~~it 437 (452)
.-+||-...-++.+.+. .+|+-++-.-=.+|++..+|
T Consensus 7 cktppkvlvrqfverferpsgekiascaaeltylcwmit 45 (128)
T d1p4ea1 7 CKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMIT 45 (128)
T ss_dssp HHSCHHHHHHHHHHTTTTTCHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhcCCCcchHHHHHHHHHhhheeEe
Confidence 34688888888888775 44444444444567776665
No 8
>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.16 E-value=1.3e+02 Score=22.07 Aligned_cols=6 Identities=67% Similarity=1.248 Sum_probs=3.0
Q ss_pred eccccc
Q 012968 9 LHNRVN 14 (452)
Q Consensus 9 ~~~~~~ 14 (452)
+||+||
T Consensus 79 ~HN~VN 84 (105)
T d1jr8a_ 79 IHNKVN 84 (105)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455554
No 9
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]}
Probab=1.76 E-value=7.1e+02 Score=21.31 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=19.4
Q ss_pred hccceeeEe--eccccceeeeCCceeeeeeeecccChhH
Q 012968 370 PLIGIGIVA--LADKLHFLVEGDSMFIFVLLLQYSTPSA 406 (452)
Q Consensus 370 P~i~i~iv~--~~~k~~~~~~~Dpi~~fv~~l~~~~P~A 406 (452)
|++..++-. |-.+.....+|+.+|.+|.+|-++.|+.
T Consensus 182 piLvYP~~~~kwd~~~s~v~PdeevfylvalL~sa~~~~ 220 (289)
T d1w1oa1 182 PLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPN 220 (289)
T ss_dssp CEEEEEEEGGGSCTTSSCCCCSSSEEEEEEECCCC---C
T ss_pred eEEEEEccccccCCCccccCCCCCEEEEEEEecCCCCcc
Confidence 444444443 2223333333578999999987765543
No 10
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=1.51 E-value=2.5e+02 Score=18.90 Aligned_cols=13 Identities=8% Similarity=-0.090 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHH
Q 012968 47 MIPRATFRLLSKL 59 (452)
Q Consensus 47 il~~~~~k~lS~l 59 (452)
++++|.+|+|+.+
T Consensus 37 ~lD~E~k~~L~~L 49 (67)
T d1tbaa_ 37 GFDAELRENIGSL 49 (67)
T ss_dssp SCCTTTHHHHTTC
T ss_pred ccCHHHHHHHHHH
Done!