BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012972
         (452 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2DCR8|CTX_SEPES SE-cephalotoxin OS=Sepia esculenta PE=1 SV=1
          Length = 1052

 Score = 33.9 bits (76), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 207 KTINVAQVFLPSA-VMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAA 265
           +T  V Q+  PS  ++  ++    D+ +   T+ D+  +NSAK+ K+ N ++S       
Sbjct: 46  ETPAVKQLETPSIFLLTTLEVAEADVDSTLETMKDRNKKNSAKLSKIGNNMKS------- 98

Query: 266 LMLLLSIIGLFLSIL 280
           L+ + S+ G FLS+L
Sbjct: 99  LLSVFSVFGGFLSLL 113


>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 GN=rep PE=3 SV=1
          Length = 7182

 Score = 32.7 bits (73), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 98   HYWASVGFTGASAFILAVIWFISFGLVL 125
            +Y+A+   TG  AF++ V WF+ FG V+
Sbjct: 3184 YYYATFYLTGEPAFVMHVSWFVMFGTVV 3211


>sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus HKU5 GN=1a PE=3 SV=1
          Length = 4481

 Score = 32.3 bits (72), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 98   HYWASVGFTGASAFILAVIWFISFGLVL 125
            +Y+A+   TG  AF++ V WF+ FG V+
Sbjct: 3184 YYYATFYLTGEPAFVMHVSWFVMFGTVV 3211


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.138    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,190,796
Number of Sequences: 539616
Number of extensions: 5633141
Number of successful extensions: 20786
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 20783
Number of HSP's gapped (non-prelim): 16
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)