Query 012972
Match_columns 452
No_of_seqs 147 out of 175
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:13:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07912 Tweety_N N-terminal do 100.0 8.6E-34 1.9E-38 294.8 27.5 277 84-366 20-324 (418)
2 PF04906 Tweety: Tweety; Inte 99.9 1.2E-21 2.7E-26 204.2 18.4 263 85-355 1-287 (406)
3 KOG4433 Tweety transmembrane/c 99.8 4.4E-18 9.5E-23 176.8 21.7 283 84-375 24-330 (526)
4 PF05478 Prominin: Prominin; 99.2 1.1E-10 2.4E-15 131.6 14.6 91 110-207 92-193 (806)
5 KOG4331 Polytopic membrane pro 98.3 3.4E-06 7.4E-11 93.8 11.0 107 91-200 89-206 (865)
6 PF04906 Tweety: Tweety; Inte 97.7 0.0019 4.2E-08 68.2 18.0 172 122-300 39-236 (406)
7 KOG4433 Tweety transmembrane/c 97.3 0.015 3.3E-07 62.2 17.7 189 103-299 46-259 (526)
8 cd07912 Tweety_N N-terminal do 97.0 0.08 1.7E-06 56.5 19.7 191 98-300 40-259 (418)
9 PF05478 Prominin: Prominin; 94.5 1.1 2.3E-05 51.6 16.2 65 219-283 361-443 (806)
10 PF00957 Synaptobrevin: Synapt 88.0 5.7 0.00012 32.9 9.5 22 222-243 31-55 (89)
11 PF03904 DUF334: Domain of unk 87.8 14 0.0003 36.7 13.2 19 187-205 64-82 (230)
12 PF07889 DUF1664: Protein of u 81.8 30 0.00066 31.3 11.7 62 161-232 17-78 (126)
13 PF03908 Sec20: Sec20; InterP 76.6 38 0.00083 28.4 10.2 17 189-205 3-19 (92)
14 COG1823 Predicted Na+/dicarbox 74.5 1.3E+02 0.0028 32.4 16.0 82 230-311 196-285 (458)
15 PF05957 DUF883: Bacterial pro 73.5 49 0.0011 27.7 10.1 34 220-253 36-69 (94)
16 KOG4331 Polytopic membrane pro 71.7 67 0.0015 37.4 13.3 70 90-163 95-173 (865)
17 PF04156 IncA: IncA protein; 70.5 29 0.00063 32.4 8.9 50 260-309 11-60 (191)
18 PRK10404 hypothetical protein; 69.9 44 0.00096 29.0 9.2 30 222-251 45-74 (101)
19 TIGR00383 corA magnesium Mg(2+ 69.2 82 0.0018 31.7 12.4 19 259-277 260-278 (318)
20 KOG2348 Urea transporter [Amin 68.0 6.1 0.00013 43.1 4.1 31 280-310 577-607 (667)
21 COG0598 CorA Mg2+ and Co2+ tra 66.3 66 0.0014 32.9 11.2 20 259-281 264-283 (322)
22 KOG0860 Synaptobrevin/VAMP-lik 63.5 92 0.002 28.0 9.9 21 224-244 62-82 (116)
23 PF12732 YtxH: YtxH-like prote 58.4 68 0.0015 25.7 7.7 45 154-201 3-47 (74)
24 COG4768 Uncharacterized protei 57.2 1.4E+02 0.003 27.6 10.1 17 229-245 90-106 (139)
25 PF13908 Shisa: Wnt and FGF in 54.4 6.5 0.00014 36.8 1.3 7 47-53 12-18 (179)
26 PF14235 DUF4337: Domain of un 54.1 1.9E+02 0.0041 27.0 16.3 39 217-255 68-109 (157)
27 PF00957 Synaptobrevin: Synapt 54.0 1E+02 0.0022 25.3 8.3 16 229-244 34-49 (89)
28 PRK09546 zntB zinc transporter 53.1 2.6E+02 0.0057 28.4 13.3 19 260-281 267-285 (324)
29 PF06103 DUF948: Bacterial pro 52.6 1.1E+02 0.0024 25.2 8.4 7 153-159 7-13 (90)
30 KOG3202 SNARE protein TLG1/Syn 48.9 1.2E+02 0.0025 30.5 9.1 25 230-254 184-208 (235)
31 KOG3882 Tetraspanin family int 45.6 50 0.0011 31.8 6.0 31 149-179 85-115 (237)
32 PF11887 DUF3407: Protein of u 45.5 2E+02 0.0043 28.9 10.4 38 221-258 93-130 (267)
33 PF10873 DUF2668: Protein of u 45.4 12 0.00025 34.9 1.4 41 98-141 52-93 (155)
34 PF02038 ATP1G1_PLM_MAT8: ATP1 44.6 15 0.00033 28.2 1.7 28 100-131 11-38 (50)
35 COG4768 Uncharacterized protei 44.6 2.5E+02 0.0054 26.0 9.7 21 230-250 84-104 (139)
36 KOG3882 Tetraspanin family int 43.4 71 0.0015 30.8 6.6 36 257-292 53-88 (237)
37 COG2177 FtsX Cell division pro 43.2 3.3E+02 0.0071 28.1 11.7 63 244-306 154-238 (297)
38 PF11169 DUF2956: Protein of u 43.1 22 0.00047 31.2 2.6 18 292-309 85-102 (103)
39 TIGR03602 streptolysinS bacter 43.1 5.3 0.00011 30.6 -1.0 9 128-136 26-34 (56)
40 PLN03094 Substrate binding sub 42.4 87 0.0019 33.3 7.5 66 190-256 289-366 (370)
41 COG5336 Uncharacterized protei 42.1 2E+02 0.0044 25.7 8.5 69 225-294 14-85 (116)
42 COG4980 GvpP Gas vesicle prote 42.0 2E+02 0.0043 25.8 8.6 31 153-183 8-38 (115)
43 PRK11085 magnesium/nickel/coba 42.0 4.1E+02 0.009 27.5 13.2 20 259-281 258-277 (316)
44 PF10267 Tmemb_cc2: Predicted 41.4 2.7E+02 0.0058 30.0 11.0 19 187-205 265-287 (395)
45 PF07662 Nucleos_tra2_C: Na+ d 41.0 1.8E+02 0.0039 28.6 8.9 55 249-303 48-108 (210)
46 PF14979 TMEM52: Transmembrane 40.1 38 0.00082 31.6 3.8 36 99-136 15-50 (154)
47 PTZ00443 Thioredoxin domain-co 39.1 33 0.00071 33.8 3.6 24 111-135 180-203 (224)
48 PF11166 DUF2951: Protein of u 38.5 2.7E+02 0.0059 24.3 10.7 22 219-240 32-53 (98)
49 COG4615 PvdE ABC-type sideroph 38.2 5.7E+02 0.012 28.2 12.7 18 102-119 119-136 (546)
50 PRK10884 SH3 domain-containing 37.2 4E+02 0.0088 26.0 11.5 28 62-92 39-67 (206)
51 PF04156 IncA: IncA protein; 34.4 3.8E+02 0.0083 24.8 14.8 18 111-129 12-29 (191)
52 TIGR00996 Mtu_fam_mce virulenc 33.9 3.2E+02 0.0069 27.1 9.8 29 229-257 237-265 (291)
53 KOG0859 Synaptobrevin/VAMP-lik 33.2 1.9E+02 0.0042 28.4 7.6 44 164-209 97-140 (217)
54 COG2443 Sss1 Preprotein transl 32.5 1.6E+02 0.0034 24.0 5.8 42 237-278 6-55 (65)
55 PF00804 Syntaxin: Syntaxin; 32.2 1.7E+02 0.0037 23.6 6.4 58 186-243 6-66 (103)
56 PF10828 DUF2570: Protein of u 32.0 3.4E+02 0.0074 23.5 9.9 27 229-255 63-89 (110)
57 PTZ00358 hypothetical protein; 31.7 82 0.0018 33.2 5.2 20 153-172 153-172 (367)
58 PF06637 PV-1: PV-1 protein (P 31.6 7E+02 0.015 27.0 13.8 32 148-183 29-61 (442)
59 COG4794 EscS Type III secretor 31.4 3E+02 0.0064 23.7 7.5 51 256-306 14-73 (89)
60 PF10854 DUF2649: Protein of u 29.5 69 0.0015 25.7 3.2 29 90-120 28-56 (67)
61 COG4575 ElaB Uncharacterized c 29.5 3E+02 0.0064 24.4 7.5 15 191-205 12-26 (104)
62 COG5325 t-SNARE complex subuni 29.2 3E+02 0.0064 28.4 8.5 43 224-271 232-274 (283)
63 PF02203 TarH: Tar ligand bind 29.1 1.2E+02 0.0027 26.9 5.5 29 153-181 15-43 (171)
64 PF01544 CorA: CorA-like Mg2+ 29.1 2.5E+02 0.0053 27.2 7.9 19 260-281 237-255 (292)
65 PRK02935 hypothetical protein; 29.0 4.1E+02 0.009 23.6 8.2 29 282-313 36-64 (110)
66 PF12729 4HB_MCP_1: Four helix 28.8 3.8E+02 0.0082 23.1 8.8 92 152-257 8-99 (181)
67 COG4709 Predicted membrane pro 28.8 3.9E+02 0.0085 26.1 8.8 14 194-207 24-37 (195)
68 PF01442 Apolipoprotein: Apoli 28.4 3.3E+02 0.0071 24.3 8.1 22 225-246 70-91 (202)
69 PF06687 SUR7: SUR7/PalI famil 28.3 4.9E+02 0.011 24.2 10.3 35 237-272 98-132 (212)
70 PF11023 DUF2614: Protein of u 28.3 3E+02 0.0066 24.7 7.4 28 281-311 34-61 (114)
71 COG5130 YIP3 Prenylated rab ac 27.6 5.2E+02 0.011 24.3 9.6 26 194-219 17-46 (169)
72 KOG0811 SNARE protein PEP12/VA 27.2 5.5E+02 0.012 26.2 10.1 20 221-240 207-226 (269)
73 PF10160 Tmemb_40: Predicted m 26.9 1.1E+02 0.0025 31.0 5.1 18 154-171 200-217 (261)
74 PRK13871 conjugal transfer pro 26.8 2.4E+02 0.0051 26.1 6.7 56 271-328 64-122 (135)
75 PF07344 Amastin: Amastin surf 25.8 4.5E+02 0.0097 24.1 8.5 34 281-319 92-125 (155)
76 PF06749 DUF1218: Protein of u 25.8 1.7E+02 0.0036 24.9 5.3 19 160-178 48-66 (97)
77 PF07043 DUF1328: Protein of u 25.8 95 0.0021 22.7 3.2 25 102-127 12-36 (39)
78 PF11657 Activator-TraM: Trans 25.4 5.5E+02 0.012 23.8 11.1 11 261-271 125-135 (144)
79 PRK11281 hypothetical protein; 24.9 1.4E+03 0.029 28.2 14.8 42 256-297 688-731 (1113)
80 PRK04098 sec-independent trans 24.6 3.4E+02 0.0074 25.6 7.5 64 165-240 16-79 (158)
81 KOG2662 Magnesium transporters 24.2 8.2E+02 0.018 26.6 11.1 21 262-282 351-371 (414)
82 PRK01919 tatB sec-independent 24.0 6.4E+02 0.014 24.1 9.9 33 223-255 58-90 (169)
83 TIGR02847 CyoD cytochrome o ub 23.9 4.2E+02 0.009 22.9 7.4 65 99-167 11-87 (96)
84 PF10779 XhlA: Haemolysin XhlA 23.5 3.9E+02 0.0084 21.4 8.7 19 241-259 35-53 (71)
85 PRK10582 cytochrome o ubiquino 23.2 3.3E+02 0.0072 24.1 6.7 65 99-167 22-98 (109)
86 PF04420 CHD5: CHD5-like prote 23.0 3.5E+02 0.0076 25.1 7.3 35 220-258 71-105 (161)
87 KOG1241 Karyopherin (importin) 22.9 1.3E+03 0.028 27.3 14.9 72 172-244 515-588 (859)
88 COG3850 NarQ Signal transducti 22.6 1.2E+03 0.025 26.6 14.1 44 185-228 58-101 (574)
89 COG3162 Predicted membrane pro 22.5 4.9E+02 0.011 23.0 7.4 27 286-312 60-86 (102)
90 PRK09109 motC flagellar motor 22.2 7.8E+02 0.017 24.5 16.4 20 191-210 73-92 (246)
91 PF08006 DUF1700: Protein of u 22.1 6.4E+02 0.014 23.4 14.5 18 191-208 21-38 (181)
92 PRK11677 hypothetical protein; 21.8 6.3E+02 0.014 23.2 9.0 24 150-173 4-27 (134)
93 TIGR00804 nupC nucleoside tran 21.3 2.6E+02 0.0057 30.1 6.8 55 249-303 238-298 (401)
94 COG3125 CyoD Heme/copper-type 20.9 4.3E+02 0.0093 23.6 6.9 64 100-167 25-100 (111)
95 PRK09400 secE preprotein trans 20.7 3E+02 0.0065 21.9 5.4 17 261-277 37-53 (61)
96 PF10577 UPF0560: Uncharacteri 20.4 1.3E+02 0.0028 35.2 4.5 24 404-428 565-588 (807)
No 1
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=100.00 E-value=8.6e-34 Score=294.84 Aligned_cols=277 Identities=18% Similarity=0.221 Sum_probs=184.2
Q ss_pred cccccCCcccCCCcceeeehhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CcchhHHHHHHHHHHHHHHHHH
Q 012972 84 HFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGK-ESASSQRICLILLIVFTCAAAI 162 (452)
Q Consensus 84 ~fk~Y~GG~nIsnkHYwaSV~fTgipgf~IA~lWfi~fGl~l~~~~cC~crc~~k~~-g~~~~~r~slilLllfTi~aii 162 (452)
.|++.++.||++||||||||+|||+ ||++||+++|+++++.+||+|||+++.+ +++++.++..+.|+++++++.+
T Consensus 20 ~f~~v~~~F~p~~~~Y~~Sv~~~a~----iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~~~sLiiltL~~~a 95 (418)
T cd07912 20 TFHRVNSTFNPEDEIYQQSLLILAS----IPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCLKWSLVIATLLCCA 95 (418)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 5788899999999999999999995 9999999888888875555554544311 1122222444444444444555
Q ss_pred HHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccc-------cc-cc---hhhHHhHHHHHHHH
Q 012972 163 GCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQ-------VF-LP---SAVMDDIDKLNRDL 231 (452)
Q Consensus 163 Gcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~-------~~-lP---~dvq~~Id~l~~~L 231 (452)
|.+++|+||++||++++++.+++ +++++++++++|++++++++-+..+++ ++ -| .|-.+.+..++++.
T Consensus 96 aIi~~f~GN~~~h~gV~~t~~si-~~an~tv~~l~nqv~~l~~al~~t~~~~L~~L~~il~~~~~~~~~~~~~~~~q~~~ 174 (418)
T cd07912 96 AIGVGLYGNDETHDGVVQLTYSL-RNANHTVAGIDNQTSDTEASLNVTVEPQLTNLEDIFDARVNKTDYLQIVQGLQQMA 174 (418)
T ss_pred HHHHHhhccHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence 55558999999999999999998 899999999999999999865444431 11 12 12222333333444
Q ss_pred HHHHHHHhHH-----hHHhHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 012972 232 STAANTLADK-----TSENSAKIRKVFN---AVRS-ALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFI 302 (452)
Q Consensus 232 nsaA~~i~~k-----~~~N~~~I~~~l~---~v~~-~liivaaVmLlLa~lGlv~~i~g~r~l~~~~~i~gwilv~~twi 302 (452)
.+.++++.+- ...|..+|.+-.+ ..|+ +.+.+..+.+++++++++--..+.|+.+++++++|.+.++++|+
T Consensus 175 ~n~~~~~~~~~~~~~~~~~l~~i~~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~l~~~W~ 254 (418)
T cd07912 175 TNAAQQLTGIPFWSLVGVSLTKLADQVSLYESYRWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFALIISWL 254 (418)
T ss_pred HHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4444333221 2233333333333 3343 23444445556666654333448899999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhHhhHhhhcCCCCCCc----cccccccCcccchhhHHHH---HHHHHHHHHHHHhH
Q 012972 303 LCGVFVILNNAISDTCMAMDEWVDHPHAETA----LSNILPCVDQRTTNKSLIQ---SKEVITDIVNVVNQ 366 (452)
Q Consensus 303 l~Gv~l~l~~~~~DtC~Am~e~~~~P~~~t~----L~diLPCvd~~~a~~~L~~---ske~i~~lV~~vN~ 366 (452)
+.|++++.+++++|.|.++|+|+.+....+- +.-.+.|. +..+|+.-++ +++...++-+++..
T Consensus 255 ~~~~~l~~~v~~sDfC~~pd~yi~~~~~~~~~~di~~yy~~C~-~~~~npF~~~l~~~~~~l~~~~~~~~~ 324 (418)
T cd07912 255 SLGLYLASAVALSDFCVDPDDYVRNQTPSGLSSDILQYYLTCE-PSTTNPFQQRLTESQRALTNMQSQVQG 324 (418)
T ss_pred HHHHHHHHHHhhhhhhcCHHHHHHhccccccchHHHHHHhcCC-CCCCCcchHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875332 33456895 4446665444 44444444444433
No 2
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=99.88 E-value=1.2e-21 Score=204.19 Aligned_cols=263 Identities=15% Similarity=0.193 Sum_probs=160.1
Q ss_pred ccccCCcccCCCcceeeehhhhhhhHHHHHHHHHHHHHHHHHH---HHHhcccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 012972 85 FRRYQGGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVA---HHCCGWRINIKGKESASSQRICLILLIVFTCAAA 161 (452)
Q Consensus 85 fk~Y~GG~nIsnkHYwaSV~fTgipgf~IA~lWfi~fGl~l~~---~~cC~crc~~k~~g~~~~~r~slilLllfTi~ai 161 (452)
|+.-++.|+++|+.|-+|++|-| .+|++|++. -+++++ ++.||||++++.+.++.+ ++..+.+++.++++.
T Consensus 1 ~~~~~~~F~p~~~~Y~qsL~~la----~v~~~~l~l-~Ll~ll~yl~~~CC~r~~~~~~~~~~~-~c~~~~~~ia~lvc~ 74 (406)
T PF04906_consen 1 FQPVSSTFNPQDEEYQQSLLILA----SVAAACLAL-SLLFLLIYLICRCCCRRPREEKSSRRC-CCLTWSLVIATLVCC 74 (406)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHhhCCCCCccccccCC-cchHHHHHHHHHHHH
Confidence 67888999999999999999988 567888873 333333 333333222211111111 133333455555556
Q ss_pred HHHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcc-------ccc-ccchhhHHhHHHHHHHHHH
Q 012972 162 IGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINV-------AQV-FLPSAVMDDIDKLNRDLST 233 (452)
Q Consensus 162 iGcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v-------~~~-~lP~dvq~~Id~l~~~Lns 233 (452)
+|.++.++||++.|+++.+... -.+.++.+..++++.....+..-...+ +.. .-|.+..+.+.++++++.+
T Consensus 75 aaigvG~yGN~e~~~gv~~~~~-s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~~~ 153 (406)
T PF04906_consen 75 AAIGVGFYGNSETNDGVYQLIY-SLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQAEN 153 (406)
T ss_pred HHHHcccccchhhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 6667889999999999877554 445555666666555544432211111 111 1344444555555443333
Q ss_pred HHHH---HhH--HhHHhHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 012972 234 AANT---LAD--KTSENSAKIRKVFN---AVRS-ALITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILC 304 (452)
Q Consensus 234 aA~~---i~~--k~~~N~~~I~~~l~---~v~~-~liivaaVmLlLa~lGlv~~i~g~r~l~~~~~i~gwilv~~twil~ 304 (452)
.+++ |.. +...|...+.+-.+ ..|+ +.+.+..+++++++++++--..+.|+.++.+.++|++.++++|++.
T Consensus 154 v~~~l~~l~~~~~~~~~l~~~~~~~~~~E~yRw~~~~~lL~l~l~icl~~l~glar~Sk~~li~~~v~gll~lvisW~~~ 233 (406)
T PF04906_consen 154 VVQQLDELPFWRNVSLSLEQLAEQVSFYEYYRWLAYLGLLILDLVICLLGLLGLARQSKCLLIVFSVLGLLALVISWISL 233 (406)
T ss_pred HHHHHhcCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHHHHHHHH
Confidence 3333 321 11122222222222 2343 2445555666777666554456788999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHhhHhhhcCCCCCCcc----ccccccCcccchhhHHHHHHH
Q 012972 305 GVFVILNNAISDTCMAMDEWVDHPHAETAL----SNILPCVDQRTTNKSLIQSKE 355 (452)
Q Consensus 305 Gv~l~l~~~~~DtC~Am~e~~~~P~~~t~L----~diLPCvd~~~a~~~L~~ske 355 (452)
|++++..++++|.|+++++|+.|-..+... .-.+-|.. ..+|++-.+..+
T Consensus 234 g~~la~aV~~SDFC~~Pd~~i~~~~~~~~~~di~~YYl~C~~-~~~nPFqq~l~~ 287 (406)
T PF04906_consen 234 GLELAAAVGLSDFCVDPDTYILNQTQNETSADILQYYLTCSQ-SVSNPFQQRLTS 287 (406)
T ss_pred HHHHHhccchhhhccCHHHHHHHhcccccchhHHHHhhcCCC-CCCCchHHHHHH
Confidence 999999999999999999999887665432 45567954 455665444444
No 3
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=99.80 E-value=4.4e-18 Score=176.84 Aligned_cols=283 Identities=16% Similarity=0.157 Sum_probs=177.3
Q ss_pred cccccCCcccCCCcceeeehhhhhhhHHHHHHHHHHH--HHHHHHHHHHhcccccCCCCCc-chhHHHHHHHHHHHHHHH
Q 012972 84 HFRRYQGGWDITNKHYWASVGFTGASAFILAVIWFIS--FGLVLVAHHCCGWRINIKGKES-ASSQRICLILLIVFTCAA 160 (452)
Q Consensus 84 ~fk~Y~GG~nIsnkHYwaSV~fTgipgf~IA~lWfi~--fGl~l~~~~cC~crc~~k~~g~-~~~~r~slilLllfTi~a 160 (452)
.|+.-+.-|++.++.|.+|.++-| ++|++.+++ .+|++...+.||||.+ ..++ .+..|+..+.+++.|++.
T Consensus 24 ~~~~tns~F~pe~~~Y~QaL~lla----~l~aa~l~l~Ll~ll~yli~~cC~Rr~--~~~~~~~~~~c~s~~l~I~tl~c 97 (526)
T KOG4433|consen 24 KLHPTNSVFRPEDSEYQQALLLLA----ALAAACLGLSLLFLLFYLICRCCCRRE--TTGRKRRRVRCLSWSLIIATLMC 97 (526)
T ss_pred eEeeccccCCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCC--ccCCCCCCcceeeehHHHHHHHH
Confidence 467778899999999999999988 455555542 2444444444433322 1122 122234445556666666
Q ss_pred HHHHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccc-cchhhH---HhHHHHH----HHHH
Q 012972 161 AIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVF-LPSAVM---DDIDKLN----RDLS 232 (452)
Q Consensus 161 iiGcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~-lP~dvq---~~Id~l~----~~Ln 232 (452)
.+|.++.++||+++|+++.+.. |-.+.+|.++.++++.+...+++.....++.. -|..++ .++++.- +++.
T Consensus 98 ca~igvg~ygN~e~~~G~~q~~-~Sl~~an~tv~ti~~qv~~~~~~l~~~~~~~l~~~~~n~t~~~~l~~~l~~vq~~~~ 176 (526)
T KOG4433|consen 98 CAAIGVGFYGNSETSDGLLQAT-YSLRHANHTVSTIDAQVSDTAEGLNNTAEQLLETLEENLTARPELLQALRRVQGNAE 176 (526)
T ss_pred HHHHheeeecCccccchHHHHH-HhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhHHHHHHHHHHHHHHHH
Confidence 7777888999999999987754 46677788888888777665553332222222 122222 2222222 2333
Q ss_pred HHHHHHhHHhHH-----hHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 012972 233 TAANTLADKTSE-----NSAKIRKVFNA---VRSA-LITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFIL 303 (452)
Q Consensus 233 saA~~i~~k~~~-----N~~~I~~~l~~---v~~~-liivaaVmLlLa~lGlv~~i~g~r~l~~~~~i~gwilv~~twil 303 (452)
.++.+.+.-... -..++.+..+. .|+. ..+..++.+++++++.+--.-+.||+++.|.++|.+.++++|.+
T Consensus 177 ~a~~~l~~~~~~~~~~~sl~~l~~~~~~yE~~RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvisWl~ 256 (526)
T KOG4433|consen 177 TAVGQLSGLPFWRMVAVSLEKLAEQVDFYESYRWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVISWLS 256 (526)
T ss_pred HHHHhhhcCcccccCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH
Confidence 333332211110 12234443333 3442 44555555666666443333478999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHhhHhhhcCCCCCC----ccccccccCcccchhhHHHHHHHHHHHHHHHHhHHHHHhhhcC
Q 012972 304 CGVFVILNNAISDTCMAMDEWVDHPHAET----ALSNILPCVDQRTTNKSLIQSKEVITDIVNVVNQFVYNIANAN 375 (452)
Q Consensus 304 ~Gv~l~l~~~~~DtC~Am~e~~~~P~~~t----~L~diLPCvd~~~a~~~L~~ske~i~~lV~~vN~~I~~v~n~n 375 (452)
.|++++..++++|.|+++|+|+.+-..+- -+-..+-| ....+|++..+.+|. .+..+..-+.+..+....
T Consensus 257 ~gl~la~sVa~sDFC~~Pd~y~~~~~~~~l~t~~~~~yl~c-~~t~~NpF~qrL~~s-q~al~~~~~~va~l~r~~ 330 (526)
T KOG4433|consen 257 LGLELASSVALSDFCVDPDDYVLNMVEEYLSTDILLYYLAC-SPTHSNPFQQRLTES-QRALNNMQSQVAGLLRMA 330 (526)
T ss_pred HhhhHHHHhhhhhhccChHHHHHHhhhcccchhHHhhhccc-CCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999997654432 13334457 477899999999998 556666666666665543
No 4
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=99.22 E-value=1.1e-10 Score=131.58 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHhcccccCCCCCcc--------hhHH-HHHHHHHHHHHHHHHHHhhhhcccccchhhh
Q 012972 110 AFILAVIWFISFGLVLVA--HHCCGWRINIKGKESA--------SSQR-ICLILLIVFTCAAAIGCILLSVGQDEFHGEA 178 (452)
Q Consensus 110 gf~IA~lWfi~fGl~l~~--~~cC~crc~~k~~g~~--------~~~r-~slilLllfTi~aiiGcivl~~Gn~kfhs~~ 178 (452)
||++-++..+.|.+++-+ +||||||||++|+|++ .|+| ++.++|+++++++++|.+++|.+|+++++++
T Consensus 92 g~~v~~~i~ll~~il~P~vg~~fCcCRCc~~CGg~~~~~~~~~~~c~R~~l~~~L~~~~~~il~g~i~aF~~n~~l~~~v 171 (806)
T PF05478_consen 92 GFLVCAVIGLLFIILMPLVGLCFCCCRCCGNCGGRMHQRDKKNDACRRGCLGILLLLLTLIILFGVICAFVANQQLSTGV 171 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444434444333 6788889999999875 3655 7788899999999999999999999999999
Q ss_pred hhhHHHHhccchHHHHHHHHHHHHHhHhh
Q 012972 179 MHTLKYVVNQSDYTVKTLRNVTEYLSLAK 207 (452)
Q Consensus 179 ~~t~d~Vv~qa~~av~tLrnVt~~L~~ak 207 (452)
+++.+ .+.++++|+..+++++.
T Consensus 172 ~~~~~-------~~~~~~~Dl~~~l~~~~ 193 (806)
T PF05478_consen 172 DDTPN-------TVNSTLDDLRTFLNDTP 193 (806)
T ss_pred hhHHH-------HHHHHHHHHHHHHHhhH
Confidence 98887 56667777777777654
No 5
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=98.30 E-value=3.4e-06 Score=93.77 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=65.8
Q ss_pred cccCCCcceeeehhhhhhhHHHHHHHHHHHH--HHHHHHHHHhcccccCCCCCcc--------hhHH-HHHHHHHHHHHH
Q 012972 91 GWDITNKHYWASVGFTGASAFILAVIWFISF--GLVLVAHHCCGWRINIKGKESA--------SSQR-ICLILLIVFTCA 159 (452)
Q Consensus 91 G~nIsnkHYwaSV~fTgipgf~IA~lWfi~f--Gl~l~~~~cC~crc~~k~~g~~--------~~~r-~slilLllfTi~ 159 (452)
|=+.. |.||.=|.|-+ |+++-.+-++.+ =+.+...|+||||||++|+++. .|+| +.-+.|++.++.
T Consensus 89 ~~~~e-k~~~~lv~~~~--g~lv~sV~~v~~iil~p~~~~~yccc~C~~rc~~r~~~~~~~~~a~kR~~~~l~Llvl~i~ 165 (865)
T KOG4331|consen 89 GCRYE-KGDILLVIYEA--GMLVCSVILVLYIILKPSEGLCYCCCRCCRRCGGRIKSALKQDDACKRPCCELELLVLAIE 165 (865)
T ss_pred CCccc-ccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHhheeeeHhhhcCCCCchhccCcHhhhhHHHHHHHHHHHH
Confidence 33444 55677777633 222222221111 1112225666777777777653 3555 788889999999
Q ss_pred HHHHHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHH
Q 012972 160 AAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVT 200 (452)
Q Consensus 160 aiiGcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt 200 (452)
.++|.+.+|..|+..|.+.+++.+-.=+-++++-+-+|++.
T Consensus 166 ~ligv~~~fvtnk~v~~~i~~s~~~m~~~~~dl~t~lrdv~ 206 (865)
T KOG4331|consen 166 LLIGVFRAFVTNKPVMLRIKNSLEDMRRLATDLRTYLRDVP 206 (865)
T ss_pred HHHHHHHHHHHhhHHHHhhhccHHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999888833333333333344333
No 6
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=97.71 E-value=0.0019 Score=68.25 Aligned_cols=172 Identities=13% Similarity=0.131 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcccccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh----hcccccchhhhhhhHH---HHhccchHHHH
Q 012972 122 GLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILL----SVGQDEFHGEAMHTLK---YVVNQSDYTVK 194 (452)
Q Consensus 122 Gl~l~~~~cC~crc~~k~~g~~~~~r~slilLllfTi~aiiGcivl----~~Gn~kfhs~~~~t~d---~Vv~qa~~av~ 194 (452)
-.++..|||++++..+..++..-- .+.++...++++++++.+... -.|=.++..+..++-+ -|-++.+++.+
T Consensus 39 ~yl~~~CC~r~~~~~~~~~~~~c~-~~~~~ia~lvc~aaigvG~yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~ 117 (406)
T PF04906_consen 39 IYLICRCCCRRPREEKSSRRCCCL-TWSLVIATLVCCAAIGVGFYGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTE 117 (406)
T ss_pred HHHHHHhhCCCCCccccccCCcch-HHHHHHHHHHHHHHHHcccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778889888775544332211 122445555567777766554 3444444444443333 23344444444
Q ss_pred HHH-HHHH---HHhHhhhhcccccccchhhHHhHHHHHHHHHHH------HHHHhHHhHHhHHHHHHHHHHHHHHHHHHH
Q 012972 195 TLR-NVTE---YLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTA------ANTLADKTSENSAKIRKVFNAVRSALITVA 264 (452)
Q Consensus 195 tLr-nVt~---~L~~ak~~~v~~~~lP~dvq~~Id~l~~~Lnsa------A~~i~~k~~~N~~~I~~~l~~v~~~liiva 264 (452)
++. .+.. .|++.-....+...--..+|++.+.+..++.+- ..++ +...+..+.++...-...+.++++.
T Consensus 118 ~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~l-~~~~~~~~~~E~yRw~~~~~lL~l~ 196 (406)
T PF04906_consen 118 ALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQAENVVQQLDELPFWRNVSLSL-EQLAEQVSFYEYYRWLAYLGLLILD 196 (406)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCcccccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 2222 233311111111111123455555554333321 1122 2233334456666666777777788
Q ss_pred HHHHHHHHHHHHH---------HhhcchhHHHHHHHHHHHHHHHH
Q 012972 265 ALMLLLSIIGLFL---------SILRHKHAIHIFILSGWLLVAIT 300 (452)
Q Consensus 265 aVmLlLa~lGlv~---------~i~g~r~l~~~~~i~gwilv~~t 300 (452)
.+.+++.++|+.- +++| .+.+++.|++..+-
T Consensus 197 l~icl~~l~glar~Sk~~li~~~v~g-----ll~lvisW~~~g~~ 236 (406)
T PF04906_consen 197 LVICLLGLLGLARQSKCLLIVFSVLG-----LLALVISWISLGLE 236 (406)
T ss_pred HHHHHHHHHHHHhcCcceEEEeeecc-----HHHHHHHHHHHHHH
Confidence 8888888888744 3334 23444678776553
No 7
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=97.28 E-value=0.015 Score=62.21 Aligned_cols=189 Identities=18% Similarity=0.152 Sum_probs=103.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh----hcccccchh--
Q 012972 103 VGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILL----SVGQDEFHG-- 176 (452)
Q Consensus 103 V~fTgipgf~IA~lWfi~fGl~l~~~~cC~crc~~k~~g~~~~~r~slilLllfTi~aiiGcivl----~~Gn~kfhs-- 176 (452)
++--|+.+.++-.+-++ --.++.|||=..--.+++. +..|..+++++..+.++++|.-+... -.|=.+...
T Consensus 46 la~l~aa~l~l~Ll~ll--~yli~~cC~Rr~~~~~~~~-~~~c~s~~l~I~tl~cca~igvg~ygN~e~~~G~~q~~~Sl 122 (526)
T KOG4433|consen 46 LAALAAACLGLSLLFLL--FYLICRCCCRRETTGRKRR-RVRCLSWSLIIATLMCCAAIGVGFYGNSETSDGLLQATYSL 122 (526)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHcCCCccCCCCC-CcceeeehHHHHHHHHHHHHheeeecCccccchHHHHHHhh
Confidence 33444444455544444 3455668887763333322 34577777777788888888765554 111111111
Q ss_pred -hhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccccc----hhhHHhHHHHHHHHHHHHH-----HHhHHhHHhH
Q 012972 177 -EAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLP----SAVMDDIDKLNRDLSTAAN-----TLADKTSENS 246 (452)
Q Consensus 177 -~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP----~dvq~~Id~l~~~LnsaA~-----~i~~k~~~N~ 246 (452)
.+++++..+-+|..++.+.+.|..+.+.+.+..+.....++ ..+|++++.+..++..-.. .=-+|..++.
T Consensus 123 ~~an~tv~ti~~qv~~~~~~l~~~~~~~l~~~~~n~t~~~~l~~~l~~vq~~~~~a~~~l~~~~~~~~~~~sl~~l~~~~ 202 (526)
T KOG4433|consen 123 RHANHTVSTIDAQVSDTAEGLNNTAEQLLETLEENLTARPELLQALRRVQGNAETAVGQLSGLPFWRMVAVSLEKLAEQV 202 (526)
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCcccccCcccHHHHHHhh
Confidence 22345555666777777777776665555444332221111 2466777666544332110 1123444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhcchhHHHHHHHHHHHHHHH
Q 012972 247 AKIRKVFNAVRSALITVAALMLLLSIIGL---------FLSILRHKHAIHIFILSGWLLVAI 299 (452)
Q Consensus 247 ~~I~~~l~~v~~~liivaaVmLlLa~lGl---------v~~i~g~r~l~~~~~i~gwilv~~ 299 (452)
.-++-..=.-.++++.+..|.+++.++|+ +|+++|+- .+++.|.+..+
T Consensus 203 ~~yE~~RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll-----~lvisWl~~gl 259 (526)
T KOG4433|consen 203 DFYESYRWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLL-----ALVISWLSLGL 259 (526)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH-----HHHHHHHHHhh
Confidence 55555555567777888888888888886 77888853 23455666544
No 8
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=96.97 E-value=0.08 Score=56.47 Aligned_cols=191 Identities=17% Similarity=0.241 Sum_probs=105.0
Q ss_pred ceeeehhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccc-CCCCCcchhHHHHHHHHHHHHHHHHHHHhhh----hcccc
Q 012972 98 HYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRIN-IKGKESASSQRICLILLIVFTCAAAIGCILL----SVGQD 172 (452)
Q Consensus 98 HYwaSV~fTgipgf~IA~lWfi~fGl~l~~~~cC~crc~-~k~~g~~~~~r~slilLllfTi~aiiGcivl----~~Gn~ 172 (452)
-|.++ ..|++ +++-++ +.++.++++|||||.. .+.+.+..|+.++++++.++++++++|.... ..|-.
T Consensus 40 ~~~a~--iaavw-lil~ll----~ll~~~~~~CCcr~~~~~~k~~s~~c~~~sLiiltL~~~aaIi~~f~GN~~~h~gV~ 112 (418)
T cd07912 40 LILAS--IPAAC-LILSLL----FLLVYLITRCCDRKPTEERPRHSICCLKWSLVIATLLCCAAIGVGLYGNDETHDGVV 112 (418)
T ss_pred HHHHH--HHHHH-HHHHHH----HHHHHHHHhccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhhccHHHhhhHH
Confidence 35555 45554 444432 4556667888888861 1233445599999999999999999998886 22223
Q ss_pred cchhhh---hhhHHHHhccchHHHHHHHHHH-HHHhHhhhh-c-----ccccccchhhHHhHHHHHHHHHHHH----HHH
Q 012972 173 EFHGEA---MHTLKYVVNQSDYTVKTLRNVT-EYLSLAKTI-N-----VAQVFLPSAVMDDIDKLNRDLSTAA----NTL 238 (452)
Q Consensus 173 kfhs~~---~~t~d~Vv~qa~~av~tLrnVt-~~L~~ak~~-~-----v~~~~lP~dvq~~Id~l~~~LnsaA----~~i 238 (452)
++.+.+ ..++..+-+|.+...++++.-. +.|+..+.+ + -+....-.+.|++.+++.+++.... .++
T Consensus 113 ~t~~si~~an~tv~~l~nqv~~l~~al~~t~~~~L~~L~~il~~~~~~~~~~~~~~~~q~~~~n~~~~~~~~~~~~~~~~ 192 (418)
T cd07912 113 QLTYSLRNANHTVAGIDNQTSDTEASLNVTVEPQLTNLEDIFDARVNKTDYLQIVQGLQQMATNAAQQLTGIPFWSLVGV 192 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 333333 3444434445555554442211 122221110 0 0001111245555555554444330 011
Q ss_pred -hHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhcchhHHHHHHHHHHHHHHHH
Q 012972 239 -ADKTSENSAKIRKVFNAVRSALITVAALMLLLSIIGL---------FLSILRHKHAIHIFILSGWLLVAIT 300 (452)
Q Consensus 239 -~~k~~~N~~~I~~~l~~v~~~liivaaVmLlLa~lGl---------v~~i~g~r~l~~~~~i~gwilv~~t 300 (452)
-++..++.++++...-...+.++++..+.++++++|+ +++++|+ +.+++.|++..+-
T Consensus 193 ~l~~i~~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~-----l~l~~~W~~~~~~ 259 (418)
T cd07912 193 SLTKLADQVSLYESYRWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGL-----FALIISWLSLGLY 259 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 1233445567888888888888888998888888886 3444543 3345667776554
No 9
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=94.51 E-value=1.1 Score=51.63 Aligned_cols=65 Identities=14% Similarity=0.323 Sum_probs=36.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHhHHhHHhHHH-HHHHHH-------H------HHH-HHHHHHHHHH---HHHHHHHHHHhh
Q 012972 219 AVMDDIDKLNRDLSTAANTLADKTSENSAK-IRKVFN-------A------VRS-ALITVAALML---LLSIIGLFLSIL 280 (452)
Q Consensus 219 dvq~~Id~l~~~LnsaA~~i~~k~~~N~~~-I~~~l~-------~------v~~-~liivaaVmL---lLa~lGlv~~i~ 280 (452)
+++++++++.+++.+.++++...+.++... +.+..+ . -|+ +.++++.+++ ++-++||++|.+
T Consensus 361 ~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G~~ 440 (806)
T PF05478_consen 361 PIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWIVGLILCCVLLLIVLCLLLGLLCGCC 440 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 667777777777777777776655443322 111111 1 122 3344444333 344569999999
Q ss_pred cch
Q 012972 281 RHK 283 (452)
Q Consensus 281 g~r 283 (452)
|++
T Consensus 441 G~~ 443 (806)
T PF05478_consen 441 GYR 443 (806)
T ss_pred cCC
Confidence 954
No 10
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=88.00 E-value=5.7 Score=32.86 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=12.2
Q ss_pred HhHHHHH---HHHHHHHHHHhHHhH
Q 012972 222 DDIDKLN---RDLSTAANTLADKTS 243 (452)
Q Consensus 222 ~~Id~l~---~~LnsaA~~i~~k~~ 243 (452)
+.+++++ ++|...|..+.+++.
T Consensus 31 e~L~~L~~kt~~L~~~a~~F~k~a~ 55 (89)
T PF00957_consen 31 EKLEELEDKTEELSDNAKQFKKNAK 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444443 566666666655554
No 11
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=87.81 E-value=14 Score=36.65 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=10.5
Q ss_pred ccchHHHHHHHHHHHHHhH
Q 012972 187 NQSDYTVKTLRNVTEYLSL 205 (452)
Q Consensus 187 ~qa~~av~tLrnVt~~L~~ 205 (452)
++-|.-..+.++++..|+.
T Consensus 64 ~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 64 EKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666655
No 12
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=81.78 E-value=30 Score=31.34 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=44.0
Q ss_pred HHHHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHHHHHH
Q 012972 161 AIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLS 232 (452)
Q Consensus 161 iiGcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~~~Ln 232 (452)
.+|++.+-+--=+|..=..-|.+-.-++.+.....|.++++.|++||. .+.+.||.+..+|.
T Consensus 17 avGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKk----------hLsqRId~vd~klD 78 (126)
T PF07889_consen 17 AVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKK----------HLSQRIDRVDDKLD 78 (126)
T ss_pred HHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHH
Confidence 335554445556676666677777778888899999999999999985 45566666664444
No 13
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=76.58 E-value=38 Score=28.37 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=8.5
Q ss_pred chHHHHHHHHHHHHHhH
Q 012972 189 SDYTVKTLRNVTEYLSL 205 (452)
Q Consensus 189 a~~av~tLrnVt~~L~~ 205 (452)
+.+++++|++....|++
T Consensus 3 s~~vT~~L~rt~~~m~~ 19 (92)
T PF03908_consen 3 SSDVTESLRRTRQMMAQ 19 (92)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 14
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=74.51 E-value=1.3e+02 Score=32.42 Aligned_cols=82 Identities=20% Similarity=0.437 Sum_probs=48.3
Q ss_pred HHHHHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhcchhH--HHHHHHHHHHHHHHHH
Q 012972 230 DLSTAANTLADKTSENSAKIRKVFNAVRSALITVAALML------LLSIIGLFLSILRHKHA--IHIFILSGWLLVAITF 301 (452)
Q Consensus 230 ~LnsaA~~i~~k~~~N~~~I~~~l~~v~~~liivaaVmL------lLa~lGlv~~i~g~r~l--~~~~~i~gwilv~~tw 301 (452)
=+.=+|-.+..|-.+-.+++++.+|.++...|-+....+ ++|+..=+++--++... +-.|++...+..+++|
T Consensus 196 ~lGiAalk~~k~~~~~ge~~~~~I~t~~~ivM~lV~~VirLTPYgV~AlMtkv~ats~~~~I~~Lg~FivAsY~Ai~~MF 275 (458)
T COG1823 196 FLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPYGVLALMTKVVATSNLEDIIKLGSFIVASYIAIFIMF 275 (458)
T ss_pred HHHHHHHHhhhhchHhHhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHhhccHHHHHHHHhHHHHHHHHHHHHH
Confidence 445556666666677777888888877654333222221 22322223333344444 3446667788888888
Q ss_pred HHHHHHHHHH
Q 012972 302 ILCGVFVILN 311 (452)
Q Consensus 302 il~Gv~l~l~ 311 (452)
++.|+.++++
T Consensus 276 vvH~iLL~~~ 285 (458)
T COG1823 276 VVHGILLALN 285 (458)
T ss_pred HHHHHHHHHc
Confidence 8888887775
No 15
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=73.49 E-value=49 Score=27.71 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=19.8
Q ss_pred hHHhHHHHHHHHHHHHHHHhHHhHHhHHHHHHHH
Q 012972 220 VMDDIDKLNRDLSTAANTLADKTSENSAKIRKVF 253 (452)
Q Consensus 220 vq~~Id~l~~~LnsaA~~i~~k~~~N~~~I~~~l 253 (452)
..+.+++...++...+++..+++++.....++.+
T Consensus 36 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V 69 (94)
T PF05957_consen 36 AEEALDDARDRAEDAADQAREQAREAAEQTEDYV 69 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666665555555543
No 16
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=71.69 E-value=67 Score=37.42 Aligned_cols=70 Identities=16% Similarity=0.003 Sum_probs=30.2
Q ss_pred CcccCCCcceeeehhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCCC-------CC-cchhH-HHHHHHHHHHHHHH
Q 012972 90 GGWDITNKHYWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRINIKG-------KE-SASSQ-RICLILLIVFTCAA 160 (452)
Q Consensus 90 GG~nIsnkHYwaSV~fTgipgf~IA~lWfi~fGl~l~~~~cC~crc~~k~-------~g-~~~~~-r~slilLllfTi~a 160 (452)
|.|.+- .|||.=+.-.-+- +.=.+-+..+|++.. ||+|||||..++ ++ .+.|. ..++++.+...+-+
T Consensus 95 ~~~~lv-~~~~g~lv~sV~~--v~~iil~p~~~~~yc-cc~C~~rc~~r~~~~~~~~~a~kR~~~~l~Llvl~i~~ligv 170 (865)
T KOG4331|consen 95 GDILLV-IYEAGMLVCSVIL--VLYIILKPSEGLCYC-CCRCCRRCGGRIKSALKQDDACKRPCCELELLVLAIELLIGV 170 (865)
T ss_pred cHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHhHHhh-eeeeHhhhcCCCCchhccCcHhhhhHHHHHHHHHHHHHHHHH
Confidence 337666 6676543332111 111111222466655 444455564432 23 23344 45555544444444
Q ss_pred HHH
Q 012972 161 AIG 163 (452)
Q Consensus 161 iiG 163 (452)
+.+
T Consensus 171 ~~~ 173 (865)
T KOG4331|consen 171 FRA 173 (865)
T ss_pred HHH
Confidence 444
No 17
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=70.50 E-value=29 Score=32.40 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012972 260 LITVAALMLLLSIIGLFLSILRHKHAIHIFILSGWLLVAITFILCGVFVI 309 (452)
Q Consensus 260 liivaaVmLlLa~lGlv~~i~g~r~l~~~~~i~gwilv~~twil~Gv~l~ 309 (452)
.++++.++++.+++++++...++-.++..+..++++.+.+.-+..|++++
T Consensus 11 ~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 11 LIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455544444444555555555544444444455444
No 18
>PRK10404 hypothetical protein; Provisional
Probab=69.94 E-value=44 Score=29.01 Aligned_cols=30 Identities=10% Similarity=0.258 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHHHHHHHhHHhHHhHHHHHH
Q 012972 222 DDIDKLNRDLSTAANTLADKTSENSAKIRK 251 (452)
Q Consensus 222 ~~Id~l~~~LnsaA~~i~~k~~~N~~~I~~ 251 (452)
..+++...++....+...+|+++-.+.-+.
T Consensus 45 ~~L~~ar~~l~~~~~~~~~~~k~aa~~td~ 74 (101)
T PRK10404 45 KALDDVKKRVSQASDSYYYRAKQAVYRADD 74 (101)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544333333
No 19
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=69.21 E-value=82 Score=31.65 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012972 259 ALITVAALMLLLSIIGLFL 277 (452)
Q Consensus 259 ~liivaaVmLlLa~lGlv~ 277 (452)
.+-+++++++.+.+++=++
T Consensus 260 ~LTvvt~IflP~t~IaGiy 278 (318)
T TIGR00383 260 ILTVVSTIFIPLTFIAGIY 278 (318)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666543333
No 20
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=67.98 E-value=6.1 Score=43.14 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=24.3
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012972 280 LRHKHAIHIFILSGWLLVAITFILCGVFVIL 310 (452)
Q Consensus 280 ~g~r~l~~~~~i~gwilv~~twil~Gv~l~l 310 (452)
+|.+....=..+-||+.+++.|++++.|...
T Consensus 577 ygskyIFSk~fF~gWviV~iiW~~~~a~~i~ 607 (667)
T KOG2348|consen 577 YGSKYIFSKLFFTGWVIVIIIWTFIAAFAIT 607 (667)
T ss_pred cCccceeechhhhHHHHHHHHHHHHHHHheE
Confidence 4555555556778999999999999988764
No 21
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=66.26 E-value=66 Score=32.90 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 012972 259 ALITVAALMLLLSIIGLFLSILR 281 (452)
Q Consensus 259 ~liivaaVmLlLa~lGlv~~i~g 281 (452)
.+-+++++++...+ +.|++|
T Consensus 264 ~LTi~s~iflPpTl---IagiyG 283 (322)
T COG0598 264 ILTIVSTIFLPPTL---ITGFYG 283 (322)
T ss_pred HHHHHHHHHHhhHH---HHcccc
Confidence 34455555555554 444444
No 22
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.49 E-value=92 Score=27.97 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhHHhHH
Q 012972 224 IDKLNRDLSTAANTLADKTSE 244 (452)
Q Consensus 224 Id~l~~~LnsaA~~i~~k~~~ 244 (452)
+++=.++|+.+|+...+.+.+
T Consensus 62 L~drad~L~~~as~F~~~A~k 82 (116)
T KOG0860|consen 62 LDDRADQLQAGASQFEKTAVK 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333346888888888776664
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=58.42 E-value=68 Score=25.74 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHH
Q 012972 154 IVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTE 201 (452)
Q Consensus 154 llfTi~aiiGcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~ 201 (452)
+-|.+-+++|.++.+.=..+--. ++++.+.++++++.+++++..+
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~sG~---e~R~~l~~~~~~~~~~~~~~~~ 47 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKSGK---ETREKLKDKAEDLKDKAKDLYE 47 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455665554443333333 3444444555555555544443
No 24
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=57.21 E-value=1.4e+02 Score=27.59 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhHHhHHh
Q 012972 229 RDLSTAANTLADKTSEN 245 (452)
Q Consensus 229 ~~LnsaA~~i~~k~~~N 245 (452)
.++|++++.+++++..+
T Consensus 90 ~~ln~s~r~~~~~~t~~ 106 (139)
T COG4768 90 SDLNQSVRHLATRATNA 106 (139)
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 57777777766655543
No 25
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=54.37 E-value=6.5 Score=36.79 Aligned_cols=7 Identities=29% Similarity=0.700 Sum_probs=3.5
Q ss_pred ccccccc
Q 012972 47 LGPLKNG 53 (452)
Q Consensus 47 ~~~w~~~ 53 (452)
.|.|..|
T Consensus 12 ~g~~~~~ 18 (179)
T PF13908_consen 12 MGQWDPG 18 (179)
T ss_pred CCCCccC
Confidence 3555543
No 26
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=54.11 E-value=1.9e+02 Score=27.03 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=27.3
Q ss_pred chhhHHhHHHHH---HHHHHHHHHHhHHhHHhHHHHHHHHHH
Q 012972 217 PSAVMDDIDKLN---RDLSTAANTLADKTSENSAKIRKVFNA 255 (452)
Q Consensus 217 P~dvq~~Id~l~---~~LnsaA~~i~~k~~~N~~~I~~~l~~ 255 (452)
+...+..|++.+ .++.+.++++++++++.-++-++..+.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~ 109 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHH 109 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 445677777765 688888999998888765555555443
No 27
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=54.03 E-value=1e+02 Score=25.35 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHHhHH
Q 012972 229 RDLSTAANTLADKTSE 244 (452)
Q Consensus 229 ~~LnsaA~~i~~k~~~ 244 (452)
+.|...++++++.++.
T Consensus 34 ~~L~~kt~~L~~~a~~ 49 (89)
T PF00957_consen 34 EELEDKTEELSDNAKQ 49 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHH
Confidence 5777777777666653
No 28
>PRK09546 zntB zinc transporter; Reviewed
Probab=53.10 E-value=2.6e+02 Score=28.40 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 012972 260 LITVAALMLLLSIIGLFLSILR 281 (452)
Q Consensus 260 liivaaVmLlLa~lGlv~~i~g 281 (452)
+-+++++++.+.| +.|++|
T Consensus 267 Ltilt~IflPlT~---IaGiyG 285 (324)
T PRK09546 267 MSLMAMVFLPTTF---LTGLFG 285 (324)
T ss_pred HHHHHHHHHHHHH---HHhhhc
Confidence 3444555555554 445554
No 29
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=52.62 E-value=1.1e+02 Score=25.22 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 012972 153 LIVFTCA 159 (452)
Q Consensus 153 LllfTi~ 159 (452)
.+.|.++
T Consensus 7 Aiaf~vL 13 (90)
T PF06103_consen 7 AIAFAVL 13 (90)
T ss_pred HHHHHHH
Confidence 3333333
No 30
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.89 E-value=1.2e+02 Score=30.45 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHHhHHhHHHHHHHHH
Q 012972 230 DLSTAANTLADKTSENSAKIRKVFN 254 (452)
Q Consensus 230 ~LnsaA~~i~~k~~~N~~~I~~~l~ 254 (452)
++....+.+.+|...-.+++.++-+
T Consensus 184 dl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 184 DLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666555555555544
No 31
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=45.62 E-value=50 Score=31.80 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhhhh
Q 012972 149 CLILLIVFTCAAAIGCILLSVGQDEFHGEAM 179 (452)
Q Consensus 149 slilLllfTi~aiiGcivl~~Gn~kfhs~~~ 179 (452)
..++++++.++-+++++..+.-.+++.++.+
T Consensus 85 y~~~l~l~~i~e~~~~i~~~~~~~~l~~~~~ 115 (237)
T KOG3882|consen 85 YFILLLLLFIAELAAGILAFVFRDSLRDELE 115 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhheeHHHHHHHHH
Confidence 3444444444556666666755566655555
No 32
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=45.50 E-value=2e+02 Score=28.91 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=21.0
Q ss_pred HHhHHHHHHHHHHHHHHHhHHhHHhHHHHHHHHHHHHH
Q 012972 221 MDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRS 258 (452)
Q Consensus 221 q~~Id~l~~~LnsaA~~i~~k~~~N~~~I~~~l~~v~~ 258 (452)
+++++.+-..+...+++.++-..+|.+.+.+.++..+-
T Consensus 93 ~~~L~~lL~~~~~~a~~~~~~l~~n~~~L~~~~~~L~p 130 (267)
T PF11887_consen 93 RQQLDALLLSATGLADTGTDFLADNRDNLIRALDDLRP 130 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444555555566666666666666665555443
No 33
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=45.40 E-value=12 Score=34.88 Aligned_cols=41 Identities=15% Similarity=0.295 Sum_probs=22.6
Q ss_pred ceeeehhh-hhhhHHHHHHHHHHHHHHHHHHHHHhcccccCCCCC
Q 012972 98 HYWASVGF-TGASAFILAVIWFISFGLVLVAHHCCGWRINIKGKE 141 (452)
Q Consensus 98 HYwaSV~f-Tgipgf~IA~lWfi~fGl~l~~~~cC~crc~~k~~g 141 (452)
.|..++.. |+|.|.+.+.+.++ |++..++.|+ |.|-.|.+|
T Consensus 52 ~yi~~~lsgtAIaGIVfgiVfim--gvva~i~icv-Cmc~kn~rg 93 (155)
T PF10873_consen 52 AYIGDVLSGTAIAGIVFGIVFIM--GVVAGIAICV-CMCMKNSRG 93 (155)
T ss_pred hhhccccccceeeeeehhhHHHH--HHHHHHHHHH-hhhhhcCCC
Confidence 36666666 77777777766555 4444444333 344433333
No 34
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=44.65 E-value=15 Score=28.22 Aligned_cols=28 Identities=21% Similarity=0.623 Sum_probs=19.2
Q ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 012972 100 WASVGFTGASAFILAVIWFISFGLVLVAHHCC 131 (452)
Q Consensus 100 waSV~fTgipgf~IA~lWfi~fGl~l~~~~cC 131 (452)
|+++=.. |.++|++.|+ .|++.++.--|
T Consensus 11 y~tLrig---GLi~A~vlfi-~Gi~iils~kc 38 (50)
T PF02038_consen 11 YETLRIG---GLIFAGVLFI-LGILIILSGKC 38 (50)
T ss_dssp HHHHHHH---HHHHHHHHHH-HHHHHHCTTHH
T ss_pred hhHhhcc---chHHHHHHHH-HHHHHHHcCcc
Confidence 4555443 5889999998 69887764333
No 35
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=44.63 E-value=2.5e+02 Score=26.00 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHhHHhHHHHH
Q 012972 230 DLSTAANTLADKTSENSAKIR 250 (452)
Q Consensus 230 ~LnsaA~~i~~k~~~N~~~I~ 250 (452)
++..+-.++.+....+++++.
T Consensus 84 dl~~SV~~ln~s~r~~~~~~t 104 (139)
T COG4768 84 DLGQSVSDLNQSVRHLATRAT 104 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444433
No 36
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=43.35 E-value=71 Score=30.77 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 012972 257 RSALITVAALMLLLSIIGLFLSILRHKHAIHIFILS 292 (452)
Q Consensus 257 ~~~liivaaVmLlLa~lGlv~~i~g~r~l~~~~~i~ 292 (452)
-..++++.+++.+++++|..-++...|+++..+.++
T Consensus 53 ~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~ 88 (237)
T KOG3882|consen 53 AYILIAVGGVVFLVGFLGCCGALRESRCLLLSYFIL 88 (237)
T ss_pred hhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHH
Confidence 345678888999999999888888888876555443
No 37
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=43.25 E-value=3.3e+02 Score=28.05 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hc------------------chhHHHHHHHHHHHHHHHHH
Q 012972 244 ENSAKIRKVFNAVRSALITVAALMLLLSIIGLFLSI----LR------------------HKHAIHIFILSGWLLVAITF 301 (452)
Q Consensus 244 ~N~~~I~~~l~~v~~~liivaaVmLlLa~lGlv~~i----~g------------------~r~l~~~~~i~gwilv~~tw 301 (452)
+..+++.+..+.++.+.+.++.+|.+.+++-...++ ++ .|..++-+..+|.+-..+.|
T Consensus 154 ~wv~rL~ai~~~~~~v~~~~~~ll~~~~vllI~NtiR~~i~sRr~eIeVmklvGAt~~fI~~PFl~~g~~~gl~Ga~~~~ 233 (297)
T COG2177 154 EWVDRLFAILRLVRTVGIGLSILLALAAVLLIGNTIRLAIFSRRREIEVMKLVGATDSFIRRPFLYEGMLIGLLGALIAL 233 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccchHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345566667777777766666666544443222211 11 12335555556666666666
Q ss_pred HHHHH
Q 012972 302 ILCGV 306 (452)
Q Consensus 302 il~Gv 306 (452)
.+++.
T Consensus 234 ~l~~~ 238 (297)
T COG2177 234 ALAAL 238 (297)
T ss_pred HHHHH
Confidence 66663
No 38
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.11 E-value=22 Score=31.21 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012972 292 SGWLLVAITFILCGVFVI 309 (452)
Q Consensus 292 ~gwilv~~twil~Gv~l~ 309 (452)
+-|+|++++|+-|++|++
T Consensus 85 LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 85 LPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 569999999999999986
No 39
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=43.09 E-value=5.3 Score=30.62 Aligned_cols=9 Identities=22% Similarity=0.456 Sum_probs=4.1
Q ss_pred HHHhccccc
Q 012972 128 HHCCGWRIN 136 (452)
Q Consensus 128 ~~cC~crc~ 136 (452)
||||||+||
T Consensus 26 cccccc~cc 34 (56)
T TIGR03602 26 CCCCCCCCC 34 (56)
T ss_pred eEEEeccEE
Confidence 444444444
No 40
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=42.45 E-value=87 Score=33.31 Aligned_cols=66 Identities=11% Similarity=0.287 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHhHhhhhccccc----ccch---hhHHhHHHHH---HHHHHHHHHHhHHhHH--hHHHHHHHHHHH
Q 012972 190 DYTVKTLRNVTEYLSLAKTINVAQV----FLPS---AVMDDIDKLN---RDLSTAANTLADKTSE--NSAKIRKVFNAV 256 (452)
Q Consensus 190 ~~av~tLrnVt~~L~~ak~~~v~~~----~lP~---dvq~~Id~l~---~~LnsaA~~i~~k~~~--N~~~I~~~l~~v 256 (452)
..++++++.++..+.++.. ++.++ .-|. ..++.++++. +++++.+.+++.-+.+ +.+.+++.++.+
T Consensus 289 ~~lL~Nle~lt~~LA~as~-~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~ft~D~~~r~~Lr~li~~L 366 (370)
T PLN03094 289 SGLLKEVEKLTRVAAEASE-DLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISGFTGDEATRRNLKQLIQSL 366 (370)
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3666777777776666432 33332 2232 2556666665 7888888888888887 666677776654
No 41
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.10 E-value=2e+02 Score=25.71 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhHHhHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-hhHHHHHHHHHH
Q 012972 225 DKLNRDLSTAANTLADKTSEN-SAKIRKVFNAVRSALITVAALMLLLSIIGLFLS-ILRH-KHAIHIFILSGW 294 (452)
Q Consensus 225 d~l~~~LnsaA~~i~~k~~~N-~~~I~~~l~~v~~~liivaaVmLlLa~lGlv~~-i~g~-r~l~~~~~i~gw 294 (452)
..+..+|.+.+...++..+++ ..+++...+.+++..=.|+++|..+. +|+++- +.|- +..+++|.++|.
T Consensus 14 ~~l~~dlaar~kd~~~~~~~~~a~s~k~~~~a~klssefIsGilVGa~-iG~llD~~agTsPwglIv~lllGf 85 (116)
T COG5336 14 TELLADLAARIKDAAEGAEKSSAESIKGYAQAFKLSSEFISGILVGAG-IGWLLDKFAGTSPWGLIVFLLLGF 85 (116)
T ss_pred HHHHHHHHHHhhhhccccccccchhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcHHHHHHHHHHH
Confidence 334455555555555553333 24578888888888777888876543 455543 2343 344677766663
No 42
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=42.04 E-value=2e+02 Score=25.80 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhhhhhHH
Q 012972 153 LIVFTCAAAIGCILLSVGQDEFHGEAMHTLK 183 (452)
Q Consensus 153 LllfTi~aiiGcivl~~Gn~kfhs~~~~t~d 183 (452)
|+-..+-+++|.+..+..-++-..++....+
T Consensus 8 l~G~liGgiiGa~aaLL~AP~sGkelR~~~K 38 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPKSGKELRKKLK 38 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 3444455677777767777766666553333
No 43
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=42.02 E-value=4.1e+02 Score=27.47 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 012972 259 ALITVAALMLLLSIIGLFLSILR 281 (452)
Q Consensus 259 ~liivaaVmLlLa~lGlv~~i~g 281 (452)
.+-+++++++...+ +.|++|
T Consensus 258 ~lTv~s~if~pptl---iagiyG 277 (316)
T PRK11085 258 IFSVVSVVFLPPTL---VASSYG 277 (316)
T ss_pred HHHHHHHHHHHHHH---HHhhcc
Confidence 34555556665554 444444
No 44
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.39 E-value=2.7e+02 Score=29.98 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=8.6
Q ss_pred ccchHHH----HHHHHHHHHHhH
Q 012972 187 NQSDYTV----KTLRNVTEYLSL 205 (452)
Q Consensus 187 ~qa~~av----~tLrnVt~~L~~ 205 (452)
+|.|+.+ .-+.|+.+.|+.
T Consensus 265 eqlNd~~elHq~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 265 EQLNDLTELHQNEIYNLKQELAS 287 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444 334444444443
No 45
>PF07662 Nucleos_tra2_C: Na+ dependent nucleoside transporter C-terminus; InterPro: IPR011657 This entry consists of nucleoside transport proteins. Q62773 from SWISSPROT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. Q62674 from SWISSPROT is a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine. It also transports the anti-viral nucleoside analogues AZT and ddC []. This entry covers the C terminus of this family of transporters.; PDB: 3TIJ_A.
Probab=40.99 E-value=1.8e+02 Score=28.61 Aligned_cols=55 Identities=15% Similarity=0.362 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---h---HHHHHHHHHHHHHHHHHHH
Q 012972 249 IRKVFNAVRSALITVAALMLLLSIIGLFLSILRHK---H---AIHIFILSGWLLVAITFIL 303 (452)
Q Consensus 249 I~~~l~~v~~~liivaaVmLlLa~lGlv~~i~g~r---~---l~~~~~i~gwilv~~twil 303 (452)
-+.+.+.+++++.+.+.++-.++++.++=++++|- . -+.+=.++||++-.+.|++
T Consensus 48 ~~Ga~~g~~la~~I~a~LIafvalial~N~~l~~ig~~~g~~~lsl~~ilGyif~P~awlm 108 (210)
T PF07662_consen 48 SNGALDGLKLALNIGAMLIAFVALIALLNGVLGWIGSLFGIEGLSLQQILGYIFSPLAWLM 108 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT-TT--HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccHHHHHhhhhhHHHHHc
Confidence 34566778888887777776666666544433321 1 1456667888888888886
No 46
>PF14979 TMEM52: Transmembrane 52
Probab=40.11 E-value=38 Score=31.63 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=18.8
Q ss_pred eeeehhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 012972 99 YWASVGFTGASAFILAVIWFISFGLVLVAHHCCGWRIN 136 (452)
Q Consensus 99 YwaSV~fTgipgf~IA~lWfi~fGl~l~~~~cC~crc~ 136 (452)
-|.|.-|-+ +.+++++-+++-|+...+..|||-|++
T Consensus 15 ~W~~LWyIw--Lill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 15 RWSSLWYIW--LILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred ceehhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 355554444 334444444434777766666655544
No 47
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=39.06 E-value=33 Score=33.76 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 012972 111 FILAVIWFISFGLVLVAHHCCGWRI 135 (452)
Q Consensus 111 f~IA~lWfi~fGl~l~~~~cC~crc 135 (452)
++|+.+-|+ ||+++.+..+|+|+|
T Consensus 180 ~~~~~~~~~-~g~~~~~~~~~~~~~ 203 (224)
T PTZ00443 180 FTISSFAFL-FGILMGLMIALFAFS 203 (224)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHcc
Confidence 456666666 677776643333333
No 48
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=38.45 E-value=2.7e+02 Score=24.29 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=13.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHhH
Q 012972 219 AVMDDIDKLNRDLSTAANTLAD 240 (452)
Q Consensus 219 dvq~~Id~l~~~LnsaA~~i~~ 240 (452)
+-|.+.+.++++++..-+++.+
T Consensus 32 ~gq~~qe~v~~kld~tlD~i~r 53 (98)
T PF11166_consen 32 DGQHDQELVNQKLDRTLDEINR 53 (98)
T ss_pred HhHhhHHHHHHHHHhhHHHHHH
Confidence 3445555666666666666644
No 49
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=38.22 E-value=5.7e+02 Score=28.21 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.3
Q ss_pred ehhhhhhhHHHHHHHHHH
Q 012972 102 SVGFTGASAFILAVIWFI 119 (452)
Q Consensus 102 SV~fTgipgf~IA~lWfi 119 (452)
|.+|+..|-++.|...++
T Consensus 119 Sf~~s~lp~~~qa~il~l 136 (546)
T COG4615 119 SFAFSRLPELVQAIILTL 136 (546)
T ss_pred eehHhhhHHHHHHHHHHH
Confidence 688899998888877555
No 50
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.25 E-value=4e+02 Score=25.96 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=14.0
Q ss_pred CCCCCcceeeccccCCCCCccccccccC-Ccc
Q 012972 62 GPEMLEPLLLASNRTKRPDILNHFRRYQ-GGW 92 (452)
Q Consensus 62 ~~~~~~~l~laa~rt~R~DPL~~fk~Y~-GG~ 92 (452)
||..++..+ ..-++-+|+.-+...+ |||
T Consensus 39 GPg~~y~Iv---~~l~~G~~v~vl~~~~~~~w 67 (206)
T PRK10884 39 GPGDQYRIV---GTLNAGEEVTLLQVNANTNY 67 (206)
T ss_pred CCCCCCceE---EEEcCCCEEEEEEEcCCCCE
Confidence 444455532 2234556666555554 566
No 51
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.38 E-value=3.8e+02 Score=24.85 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012972 111 FILAVIWFISFGLVLVAHH 129 (452)
Q Consensus 111 f~IA~lWfi~fGl~l~~~~ 129 (452)
++++++ +++-|+++++++
T Consensus 12 iilgil-li~~gI~~Lv~~ 29 (191)
T PF04156_consen 12 IILGIL-LIASGIAALVLF 29 (191)
T ss_pred HHHHHH-HHHHHHHHHHHH
Confidence 444444 554577765543
No 52
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=33.88 E-value=3.2e+02 Score=27.13 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHHhHHhHHHHHHHHHHHH
Q 012972 229 RDLSTAANTLADKTSENSAKIRKVFNAVR 257 (452)
Q Consensus 229 ~~LnsaA~~i~~k~~~N~~~I~~~l~~v~ 257 (452)
.++...+.++++-..+|.+.+...++.+.
T Consensus 237 ~~l~~~~~~~~~~l~~~~~~l~~~l~~l~ 265 (291)
T TIGR00996 237 AALSGASAQVRDLLAENRPNLPQALANLA 265 (291)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444444444555555555555555543
No 53
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.24 E-value=1.9e+02 Score=28.44 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=32.8
Q ss_pred HhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhh
Q 012972 164 CILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTI 209 (452)
Q Consensus 164 civl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~ 209 (452)
.+..|..|+.|.+-..+-.+|--+--+ +++|-.+...+++.|.+
T Consensus 97 ta~AysmN~EFs~vL~qqm~y~s~~p~--id~lskvkaqv~evk~v 140 (217)
T KOG0859|consen 97 TAVAYSMNKEFSSVLKQQMQYCSEHPE--ISKLAKVKAQVTEVKGV 140 (217)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHcCcc--hhHHHHHHHHHHHHHHH
Confidence 356799999999988887887665554 77777777777766643
No 54
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=32.54 E-value=1.6e+02 Score=23.95 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=22.1
Q ss_pred HHhHHhHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 012972 237 TLADKTSENSAKIRKVFNAVRS--------ALITVAALMLLLSIIGLFLS 278 (452)
Q Consensus 237 ~i~~k~~~N~~~I~~~l~~v~~--------~liivaaVmLlLa~lGlv~~ 278 (452)
+..+..+++.++.++++.--+. +.=+.+..+++++++|++.-
T Consensus 6 ~~~e~~~~~lke~~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI~ 55 (65)
T COG2443 6 DKPEELREFLKEYRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFIIY 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555553321 23445556667777777653
No 55
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=32.20 E-value=1.7e+02 Score=23.64 Aligned_cols=58 Identities=9% Similarity=0.229 Sum_probs=30.0
Q ss_pred hccchHHHHHHHHHHHHHhHhhhhcccccccch---hhHHhHHHHHHHHHHHHHHHhHHhH
Q 012972 186 VNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPS---AVMDDIDKLNRDLSTAANTLADKTS 243 (452)
Q Consensus 186 v~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~---dvq~~Id~l~~~LnsaA~~i~~k~~ 243 (452)
++.+++.-..|..+...++.-+..+-..+..|. +....+|.+..+++..+..+..+.+
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk 66 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLK 66 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666654444433233332 2555566666555555555544444
No 56
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=31.96 E-value=3.4e+02 Score=23.54 Aligned_cols=27 Identities=11% Similarity=0.281 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHhHHhHHHHHHHHHH
Q 012972 229 RDLSTAANTLADKTSENSAKIRKVFNA 255 (452)
Q Consensus 229 ~~LnsaA~~i~~k~~~N~~~I~~~l~~ 255 (452)
.+......++..+..+..++|+++++.
T Consensus 63 ~~~~~~~qq~r~~~e~~~e~ik~~lk~ 89 (110)
T PF10828_consen 63 EEQQKREQQLRQQSEERRESIKTALKD 89 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 455555667777777777788887764
No 57
>PTZ00358 hypothetical protein; Provisional
Probab=31.74 E-value=82 Score=33.24 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhhcccc
Q 012972 153 LIVFTCAAAIGCILLSVGQD 172 (452)
Q Consensus 153 LllfTi~aiiGcivl~~Gn~ 172 (452)
|.+..+++..++..-+.+.+
T Consensus 153 LviL~vlavt~sl~~~~~~~ 172 (367)
T PTZ00358 153 LVILIVLAVTASLIAFVGRS 172 (367)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 44444555667777777777
No 58
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=31.57 E-value=7e+02 Score=27.02 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHH-HhhhhcccccchhhhhhhHH
Q 012972 148 ICLILLIVFTCAAAIG-CILLSVGQDEFHGEAMHTLK 183 (452)
Q Consensus 148 ~slilLllfTi~aiiG-civl~~Gn~kfhs~~~~t~d 183 (452)
+++..||-| ++|+| +..+.+||. |.+++.-++
T Consensus 29 FlF~SLIQ~--LIIlgLVLFmVYGn~--h~~te~~lq 61 (442)
T PF06637_consen 29 FLFVSLIQF--LIILGLVLFMVYGNV--HVSTESRLQ 61 (442)
T ss_pred HHHHHHHHH--HHHHHHHHHHhhCCc--chhhHHHHH
Confidence 344445555 66677 455678887 666654444
No 59
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=31.44 E-value=3e+02 Score=23.70 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---------chhHHHHHHHHHHHHHHHHHHHHHH
Q 012972 256 VRSALITVAALMLLLSIIGLFLSILR---------HKHAIHIFILSGWLLVAITFILCGV 306 (452)
Q Consensus 256 v~~~liivaaVmLlLa~lGlv~~i~g---------~r~l~~~~~i~gwilv~~twil~Gv 306 (452)
..++++.-+-..++.+++|++.|++- ++..+.++++++-++++.-|.-.-+
T Consensus 14 L~liLilSlPpvivAsvvGllVslvQA~TQiQdQTl~f~iKLl~V~~tl~lt~~Wlg~~l 73 (89)
T COG4794 14 LWLILILSLPPVIVASVVGLLVSLVQALTQIQDQTLPFGIKLLAVSATLFLTAGWLGATL 73 (89)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 34455555556667788888887753 3456777777777788888875444
No 60
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=29.51 E-value=69 Score=25.71 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=23.0
Q ss_pred CcccCCCcceeeehhhhhhhHHHHHHHHHHH
Q 012972 90 GGWDITNKHYWASVGFTGASAFILAVIWFIS 120 (452)
Q Consensus 90 GG~nIsnkHYwaSV~fTgipgf~IA~lWfi~ 120 (452)
-|||+++-.| ++.--|++..+.-..||..
T Consensus 28 ~~w~ltqneY--lt~MiGiWiVilFLtWf~l 56 (67)
T PF10854_consen 28 TTWNLTQNEY--LTIMIGIWIVILFLTWFLL 56 (67)
T ss_pred eeeccccchh--HHHHHHHHHHHHHHHHHHH
Confidence 3899999999 5777888877777888764
No 61
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=29.45 E-value=3e+02 Score=24.36 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhH
Q 012972 191 YTVKTLRNVTEYLSL 205 (452)
Q Consensus 191 ~av~tLrnVt~~L~~ 205 (452)
...+.|+.+.+.+++
T Consensus 12 ~l~~el~~L~d~lEe 26 (104)
T COG4575 12 QLLAELQELLDTLEE 26 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555554
No 62
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=29.24 E-value=3e+02 Score=28.36 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012972 224 IDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSALITVAALMLLLS 271 (452)
Q Consensus 224 Id~l~~~LnsaA~~i~~k~~~N~~~I~~~l~~v~~~liivaaVmLlLa 271 (452)
|+++...+.+|.+++. |+....|+-+| -+.+++++..||+++.
T Consensus 232 i~~t~~n~k~A~kEL~-kA~~hqrrt~k----~~~~~Llil~vv~lfv 274 (283)
T COG5325 232 IENTSDNLKNANKELE-KAPAHQRRTKK----CRFYLLLILLVVLLFV 274 (283)
T ss_pred hhhhhHHHHhhHHHHH-HhHHHHhhhcc----chhhHHHHHHHHHHHH
Confidence 4444456666666663 33333333333 2344455555544443
No 63
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=29.11 E-value=1.2e+02 Score=26.90 Aligned_cols=29 Identities=14% Similarity=-0.084 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhhhhh
Q 012972 153 LIVFTCAAAIGCILLSVGQDEFHGEAMHT 181 (452)
Q Consensus 153 LllfTi~aiiGcivl~~Gn~kfhs~~~~t 181 (452)
+.+|+++.++..++.+.|-.+..+++++.
T Consensus 15 l~~~~~ll~~~~~~~~~~l~~~~~~l~~~ 43 (171)
T PF02203_consen 15 LALFLLLLLVVGGLGFWGLRSSNESLEEI 43 (171)
T ss_dssp ----------HHCCCCCCHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444556677766666665443
No 64
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=29.06 E-value=2.5e+02 Score=27.22 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 012972 260 LITVAALMLLLSIIGLFLSILR 281 (452)
Q Consensus 260 liivaaVmLlLa~lGlv~~i~g 281 (452)
+-+++++++-+.| +.|++|
T Consensus 237 LT~~t~iflPlt~---i~g~fG 255 (292)
T PF01544_consen 237 LTIVTAIFLPLTF---ITGIFG 255 (292)
T ss_dssp HHHHHHHHHHHHH---HTTSTT
T ss_pred HHHHHHHHHHHHH---HHHHhh
Confidence 3444555555554 455555
No 65
>PRK02935 hypothetical protein; Provisional
Probab=29.00 E-value=4.1e+02 Score=23.64 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012972 282 HKHAIHIFILSGWLLVAITFILCGVFVILNNA 313 (452)
Q Consensus 282 ~r~l~~~~~i~gwilv~~twil~Gv~l~l~~~ 313 (452)
.+-++.+|.++|.+++.++ +++|+-++..
T Consensus 36 ~~~~m~ifm~~G~l~~l~S---~vvYFwiGml 64 (110)
T PRK02935 36 SIIIMTIFMLLGFLAVIAS---TVVYFWIGML 64 (110)
T ss_pred cHHHHHHHHHHHHHHHHHH---HHHHHHHhhh
Confidence 4456677777887777655 5666666543
No 66
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=28.77 E-value=3.8e+02 Score=23.07 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHHHHH
Q 012972 152 LLIVFTCAAAIGCILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDL 231 (452)
Q Consensus 152 lLllfTi~aiiGcivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~~~L 231 (452)
+++.|.+++++..++...|-..+++--..+.+ +.+..-..+..+.++...+......-...+..|.
T Consensus 8 L~~~f~~~~~l~~~~~~~~~~~l~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 73 (181)
T PF12729_consen 8 LILGFGLIILLLLIVGIVGLYSLSQINQNVEE-IYENNLPSIELLNDIRSNLQRIRRALRRYLLATD------------- 73 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------------
Q ss_pred HHHHHHHhHHhHHhHHHHHHHHHHHH
Q 012972 232 STAANTLADKTSENSAKIRKVFNAVR 257 (452)
Q Consensus 232 nsaA~~i~~k~~~N~~~I~~~l~~v~ 257 (452)
.....++.++..+..+++++.++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (181)
T PF12729_consen 74 PEERQEIEKEIDEARAEIDEALEEYE 99 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 67
>COG4709 Predicted membrane protein [Function unknown]
Probab=28.76 E-value=3.9e+02 Score=26.11 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhHhh
Q 012972 194 KTLRNVTEYLSLAK 207 (452)
Q Consensus 194 ~tLrnVt~~L~~ak 207 (452)
+.+++-.++...+.
T Consensus 24 e~m~dyeehF~~a~ 37 (195)
T COG4709 24 EIMYDYEEHFREAQ 37 (195)
T ss_pred HHHHHHHHHHHhhh
Confidence 34444444444443
No 68
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=28.43 E-value=3.3e+02 Score=24.33 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhHHhHHhH
Q 012972 225 DKLNRDLSTAANTLADKTSENS 246 (452)
Q Consensus 225 d~l~~~LnsaA~~i~~k~~~N~ 246 (452)
+.+...|.+....+.+......
T Consensus 70 ~~~~~~l~~~~~~~~~~l~~~~ 91 (202)
T PF01442_consen 70 EELKNSLDSSTSELDESLSERA 91 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3333444444444444333333
No 69
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=28.32 E-value=4.9e+02 Score=24.23 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=16.9
Q ss_pred HHhHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012972 237 TLADKTSENSAKIRKVFNAVRSALITVAALMLLLSI 272 (452)
Q Consensus 237 ~i~~k~~~N~~~I~~~l~~v~~~liivaaVmLlLa~ 272 (452)
.+.++.+++.+.+++.++.+... ..++.+..++++
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~l-~~ia~~~t~l~~ 132 (212)
T PF06687_consen 98 GLPSSLRSALDYYNNLLKAMFIL-YPIAIVFTFLAL 132 (212)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 44555555555666665555443 333433333333
No 70
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=28.25 E-value=3e+02 Score=24.68 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=16.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012972 281 RHKHAIHIFILSGWLLVAITFILCGVFVILN 311 (452)
Q Consensus 281 g~r~l~~~~~i~gwilv~~twil~Gv~l~l~ 311 (452)
+.+-++.++.++|.+.+..+ .++|+.+.
T Consensus 34 ~~~~im~ifmllG~L~~l~S---~~VYfwIG 61 (114)
T PF11023_consen 34 ASPIIMVIFMLLGLLAILAS---TAVYFWIG 61 (114)
T ss_pred ccHHHHHHHHHHHHHHHHHH---HHHHHHhh
Confidence 34556777777886655444 44555444
No 71
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=27.58 E-value=5.2e+02 Score=24.29 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhHhhhh----cccccccchh
Q 012972 194 KTLRNVTEYLSLAKTI----NVAQVFLPSA 219 (452)
Q Consensus 194 ~tLrnVt~~L~~ak~~----~v~~~~lP~d 219 (452)
++.|+..++|..-+.. ++..+.-|.|
T Consensus 17 e~~~s~~q~L~~~~~~~eFfni~rIs~PqN 46 (169)
T COG5130 17 EIYRSIKQALGDKDVTREFFNIGRISVPQN 46 (169)
T ss_pred HHHHHHHHHhcCcccHHHHhccccccCCcc
Confidence 4455555555542221 2445556665
No 72
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.23 E-value=5.5e+02 Score=26.24 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=13.1
Q ss_pred HHhHHHHHHHHHHHHHHHhH
Q 012972 221 MDDIDKLNRDLSTAANTLAD 240 (452)
Q Consensus 221 q~~Id~l~~~LnsaA~~i~~ 240 (452)
.+.+|+++..+..+++..+.
T Consensus 207 G~~VDsIe~nve~a~~nveq 226 (269)
T KOG0811|consen 207 GELVDSIEANVENASVNVEQ 226 (269)
T ss_pred hhHHhHHHHHHHHHHHHHHH
Confidence 34677777777777666543
No 73
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=26.88 E-value=1.1e+02 Score=30.98 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhhccc
Q 012972 154 IVFTCAAAIGCILLSVGQ 171 (452)
Q Consensus 154 llfTi~aiiGcivl~~Gn 171 (452)
.++=.+..+||++++.|.
T Consensus 200 ~~LN~~q~~Gs~Ll~~~~ 217 (261)
T PF10160_consen 200 FLLNLLQSIGSGLLGYGA 217 (261)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 334455678988877653
No 74
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=26.79 E-value=2.4e+02 Score=26.06 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=31.9
Q ss_pred HHHHHHHH--hhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhhcCC
Q 012972 271 SIIGLFLS--ILRH-KHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCMAMDEWVDHP 328 (452)
Q Consensus 271 a~lGlv~~--i~g~-r~l~~~~~i~gwilv~~twil~Gv~l~l~~~~~DtC~Am~e~~~~P 328 (452)
+-+++.|+ .-+. |+++++...++ +++..+-|+ ++|-.-...++..=..++.|...|
T Consensus 64 aG~~liFGg~~~gf~Rrl~~vVlg~~-il~gAt~i~-~lFg~~GA~i~~~~~~~~~~~~~~ 122 (135)
T PRK13871 64 AGAMLIFGGELNDFARRLCYVALVGG-VLLGATQIV-ALFGATGASIGELEARAGPGIYEP 122 (135)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHH-HHHhhHHHH-HHHccccccccCchhhcccccccc
Confidence 33445665 5556 77755555444 666666665 666555555555555555554444
No 75
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=25.84 E-value=4.5e+02 Score=24.09 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=23.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 012972 281 RHKHAIHIFILSGWLLVAITFILCGVFVILNNAISDTCM 319 (452)
Q Consensus 281 g~r~l~~~~~i~gwilv~~twil~Gv~l~l~~~~~DtC~ 319 (452)
.+|.....+.+++++...++|.+--.-+- ++.|.
T Consensus 92 ~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~-----~~~C~ 125 (155)
T PF07344_consen 92 CLRWVCLVLNIVGIVTLLVVWALMVVVYY-----GGFCG 125 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCc
Confidence 45666777888888888888876443332 88885
No 76
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=25.83 E-value=1.7e+02 Score=24.93 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=10.8
Q ss_pred HHHHHhhhhcccccchhhh
Q 012972 160 AAIGCILLSVGQDEFHGEA 178 (452)
Q Consensus 160 aiiGcivl~~Gn~kfhs~~ 178 (452)
.+++-+++.+|...-+.++
T Consensus 48 f~ia~~~ll~ga~~n~~~~ 66 (97)
T PF06749_consen 48 FIIAEALLLAGASMNARHT 66 (97)
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 3556666666665544443
No 77
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=25.79 E-value=95 Score=22.75 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=19.7
Q ss_pred ehhhhhhhHHHHHHHHHHHHHHHHHH
Q 012972 102 SVGFTGASAFILAVIWFISFGLVLVA 127 (452)
Q Consensus 102 SV~fTgipgf~IA~lWfi~fGl~l~~ 127 (452)
-.||+|+.|.+...++++ |.+++.+
T Consensus 12 ~lGF~Giag~a~~iAkiL-f~iflvl 36 (39)
T PF07043_consen 12 VLGFGGIAGTAAGIAKIL-FFIFLVL 36 (39)
T ss_pred HcCcccHHHHHHHHHHHH-HHHHHHH
Confidence 358999999999999988 6666554
No 78
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=25.39 E-value=5.5e+02 Score=23.84 Aligned_cols=11 Identities=45% Similarity=0.594 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 012972 261 ITVAALMLLLS 271 (452)
Q Consensus 261 iivaaVmLlLa 271 (452)
..+++++.+++
T Consensus 125 nl~aa~~~~~a 135 (144)
T PF11657_consen 125 NLVAAVLVLLA 135 (144)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 79
>PRK11281 hypothetical protein; Provisional
Probab=24.86 E-value=1.4e+03 Score=28.18 Aligned_cols=42 Identities=24% Similarity=0.536 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-hh-HHHHHHHHHHHHH
Q 012972 256 VRSALITVAALMLLLSIIGLFLSILRH-KH-AIHIFILSGWLLV 297 (452)
Q Consensus 256 v~~~liivaaVmLlLa~lGlv~~i~g~-r~-l~~~~~i~gwilv 297 (452)
++..++.+..++.+++++|.......+ .+ ...++++++|+++
T Consensus 688 ~~~~l~~~P~~l~~l~~~GY~yTa~~l~~~l~~s~~l~~~~~l~ 731 (1113)
T PRK11281 688 VRTVLTIAPIALIVLVVLGYYYTALRLIGRLIETLYLLIIWNLL 731 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556677778877765432 22 2344444566654
No 80
>PRK04098 sec-independent translocase; Provisional
Probab=24.61 E-value=3.4e+02 Score=25.64 Aligned_cols=64 Identities=14% Similarity=0.273 Sum_probs=29.1
Q ss_pred hhhhcccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHHHHHHHHHHHHhH
Q 012972 165 ILLSVGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLAD 240 (452)
Q Consensus 165 ivl~~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~~~LnsaA~~i~~ 240 (452)
++++.|-.|+-+-+....+ .++.+..+++.++. .+++-.-..++++...+....|.+.+.++..
T Consensus 16 aLlvfGP~KLP~~~r~lGk-----------~ir~~K~~~~~~k~-~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 16 AIIFLGPDKLPQAMVDIAK-----------FFKAVKKTINDAKS-TLDKEINIEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred HHhhcCchHHHHHHHHHHH-----------HHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788887654443332 23333333333321 1111111234455555555556666655543
No 81
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=24.24 E-value=8.2e+02 Score=26.59 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 012972 262 TVAALMLLLSIIGLFLSILRH 282 (452)
Q Consensus 262 ivaaVmLlLa~lGlv~~i~g~ 282 (452)
.+.+-++.+++-+++-+++|.
T Consensus 351 ~Lt~gT~~~s~~~~va~ifGM 371 (414)
T KOG2662|consen 351 LLTIGTFCLSVFSVVAGIFGM 371 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 334445566666677777774
No 82
>PRK01919 tatB sec-independent translocase; Provisional
Probab=24.03 E-value=6.4e+02 Score=24.13 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHhHHhHHhHHHHHHHHHH
Q 012972 223 DIDKLNRDLSTAANTLADKTSENSAKIRKVFNA 255 (452)
Q Consensus 223 ~Id~l~~~LnsaA~~i~~k~~~N~~~I~~~l~~ 255 (452)
.+.+...++.+++.++++..+++.+..++-++.
T Consensus 58 Elrk~~~~~e~~~~~v~~si~~~~~~~~~~~~~ 90 (169)
T PRK01919 58 ELRKMKTDFESAARDVENTIHDNLSEHESDLND 90 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344455666666777776666666666654443
No 83
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=23.93 E-value=4.2e+02 Score=22.91 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=33.9
Q ss_pred eeeehhhhhhhHHHHHH--------HHHHHHHHHH--HH--HHHhcccccCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 012972 99 YWASVGFTGASAFILAV--------IWFISFGLVL--VA--HHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCIL 166 (452)
Q Consensus 99 YwaSV~fTgipgf~IA~--------lWfi~fGl~l--~~--~~cC~crc~~k~~g~~~~~r~slilLllfTi~aiiGciv 166 (452)
|.-|+.+|.+|.+++.. .+++ ++++. .+ ..++-- -+.+++++-...++++-++..++.++|++-
T Consensus 11 FiLsliLT~i~F~~v~~~~~~~~~~~~~i-~~~A~iQi~vqL~~FlH---l~~~~~~~~n~~~l~Ft~~i~~iiv~GSiW 86 (96)
T TIGR02847 11 FVLSVILTAIPFGLVMSGTLSKGLTLVII-IVLAVVQILVHLVFFLH---LNTSSEQRWNLISLLFTILIIFILIGGSIW 86 (96)
T ss_pred HHHHHHHHHHHHHHHHHccCCHhHHHHHH-HHHHHHHHHHHHHHHhh---ccCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34588899999887763 3333 12211 11 333321 111222334456666666666677788754
Q ss_pred h
Q 012972 167 L 167 (452)
Q Consensus 167 l 167 (452)
.
T Consensus 87 I 87 (96)
T TIGR02847 87 I 87 (96)
T ss_pred H
Confidence 3
No 84
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.52 E-value=3.9e+02 Score=21.36 Aligned_cols=19 Identities=5% Similarity=0.095 Sum_probs=10.8
Q ss_pred HhHHhHHHHHHHHHHHHHH
Q 012972 241 KTSENSAKIRKVFNAVRSA 259 (452)
Q Consensus 241 k~~~N~~~I~~~l~~v~~~ 259 (452)
+.+++.++|.+.-+...+.
T Consensus 35 ~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 35 DIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666655554
No 85
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=23.18 E-value=3.3e+02 Score=24.08 Aligned_cols=65 Identities=12% Similarity=0.261 Sum_probs=32.9
Q ss_pred eeeehhhhhhhHHHHHH--------HHHHHHHHHH--HH--HHHhcccccCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 012972 99 YWASVGFTGASAFILAV--------IWFISFGLVL--VA--HHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCIL 166 (452)
Q Consensus 99 YwaSV~fTgipgf~IA~--------lWfi~fGl~l--~~--~~cC~crc~~k~~g~~~~~r~slilLllfTi~aiiGciv 166 (452)
|.-|+.+|.+|.+++.. .+++ ++++. .+ +.|+-- -. .++.++-....+++-++..++.++|++-
T Consensus 22 FiLSliLT~i~F~lv~~~~~~~~~~~~~i-~~lA~vQi~VqL~~FLH-l~--~~~~~~wn~~al~Ft~~i~~iiv~GSlW 97 (109)
T PRK10582 22 FILSIILTVIPFWMVMTGAASPAVILGTI-LAMAVVQILVHLVCFLH-MN--TKSDEGWNMTAFVFTVLIIAILVVGSIW 97 (109)
T ss_pred HHHHHHHHHHHHHHHHHccCChhHHHHHH-HHHHHHHHHHHHHHHhc-cc--CCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999888753 3333 22221 11 333321 11 1222233445555555555566778754
Q ss_pred h
Q 012972 167 L 167 (452)
Q Consensus 167 l 167 (452)
.
T Consensus 98 I 98 (109)
T PRK10582 98 I 98 (109)
T ss_pred H
Confidence 3
No 86
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.00 E-value=3.5e+02 Score=25.10 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=16.5
Q ss_pred hHHhHHHHHHHHHHHHHHHhHHhHHhHHHHHHHHHHHHH
Q 012972 220 VMDDIDKLNRDLSTAANTLADKTSENSAKIRKVFNAVRS 258 (452)
Q Consensus 220 vq~~Id~l~~~LnsaA~~i~~k~~~N~~~I~~~l~~v~~ 258 (452)
.+.++|+++++|.+..++...+ ..++++.+..++.
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~~----~~~~~~~~~~~~~ 105 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSSE----KSSFDKSLSKVLW 105 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3445555555555544444332 3346666555554
No 87
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.87 E-value=1.3e+03 Score=27.29 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=32.7
Q ss_pred ccchhhhhhhHHHHh-ccchHHHHHHHHHHHHHhHhhhhccc-ccccchhhHHhHHHHHHHHHHHHHHHhHHhHH
Q 012972 172 DEFHGEAMHTLKYVV-NQSDYTVKTLRNVTEYLSLAKTINVA-QVFLPSAVMDDIDKLNRDLSTAANTLADKTSE 244 (452)
Q Consensus 172 ~kfhs~~~~t~d~Vv-~qa~~av~tLrnVt~~L~~ak~~~v~-~~~lP~dvq~~Id~l~~~LnsaA~~i~~k~~~ 244 (452)
.+.+..+-+.+.++| +..++.-..+.+++.++..--..-++ ++ +-.+-+++.+.++.-|-..-..|-+|...
T Consensus 515 sNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~-l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~ 588 (859)
T KOG1241|consen 515 SNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQI-LSLADRAQLNELQSLLCNTLQSIIRKVGS 588 (859)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 445555666666655 34445555555555444321111111 11 11233445555555554444555555554
No 88
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=22.63 E-value=1.2e+03 Score=26.56 Aligned_cols=44 Identities=16% Similarity=-0.022 Sum_probs=29.0
Q ss_pred HhccchHHHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHH
Q 012972 185 VVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLN 228 (452)
Q Consensus 185 Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~ 228 (452)
+-.++.+.-..++-..+.|.+-.+....+...|.+++++.+++.
T Consensus 58 ~~~~~~~~~~~~~~~~~sL~s~~~~~~~~~~~P~~~~~~y~~L~ 101 (574)
T COG3850 58 VQLGSPQLDAHVALFQTSLHSPALRALLPWRVPLAVKTQYQQLI 101 (574)
T ss_pred hccCchhHHHHHHHHHHhcCCHHHHhhhhccChHhHHHHHHHHH
Confidence 33455555555666666666655555556778989888888876
No 89
>COG3162 Predicted membrane protein [Function unknown]
Probab=22.53 E-value=4.9e+02 Score=22.96 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012972 286 IHIFILSGWLLVAITFILCGVFVILNN 312 (452)
Q Consensus 286 ~~~~~i~gwilv~~twil~Gv~l~l~~ 312 (452)
+..-+.+|......+|+++|+|.--.|
T Consensus 60 Vt~Gip~gvg~fv~tfVlt~IYv~rAn 86 (102)
T COG3162 60 VTRGIPFGVGVFVMTFVLTGIYVRRAN 86 (102)
T ss_pred eehhHhHHHHHHHHHHHHHHHHhhHhh
Confidence 334455666677889999999976654
No 90
>PRK09109 motC flagellar motor protein; Reviewed
Probab=22.22 E-value=7.8e+02 Score=24.45 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhHhhhhc
Q 012972 191 YTVKTLRNVTEYLSLAKTIN 210 (452)
Q Consensus 191 ~av~tLrnVt~~L~~ak~~~ 210 (452)
+..+.++.+.+..+.++..+
T Consensus 73 ~~~~~i~~l~~l~~~~r~~g 92 (246)
T PRK09109 73 DLEGGIDRIVEWSNTARKEG 92 (246)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 44466666666666666444
No 91
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=22.06 E-value=6.4e+02 Score=23.36 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHhhh
Q 012972 191 YTVKTLRNVTEYLSLAKT 208 (452)
Q Consensus 191 ~av~tLrnVt~~L~~ak~ 208 (452)
+-.+.++.-.++++.+..
T Consensus 21 e~~e~l~~Y~e~f~d~~~ 38 (181)
T PF08006_consen 21 EREEILEYYEEYFDDAGE 38 (181)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 566777777888877654
No 92
>PRK11677 hypothetical protein; Provisional
Probab=21.79 E-value=6.3e+02 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccccc
Q 012972 150 LILLIVFTCAAAIGCILLSVGQDE 173 (452)
Q Consensus 150 lilLllfTi~aiiGcivl~~Gn~k 173 (452)
++.++.|.+-+++|.+++-.++.+
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccch
Confidence 344566656666666665554444
No 93
>TIGR00804 nupC nucleoside transporter. One human homologue(CNT1) transports pyrimidine nucleosides and adenosine, but deoxyadenosine and guanosine are poor substrates of this permease. Another (CNT2) is selective for purine nucleosides. Alteration of just a few amino acyl residues in TMSs 7 and 8 interconverts their specificities.
Probab=21.30 E-value=2.6e+02 Score=30.14 Aligned_cols=55 Identities=15% Similarity=0.355 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch------hHHHHHHHHHHHHHHHHHHH
Q 012972 249 IRKVFNAVRSALITVAALMLLLSIIGLFLSILRHK------HAIHIFILSGWLLVAITFIL 303 (452)
Q Consensus 249 I~~~l~~v~~~liivaaVmLlLa~lGlv~~i~g~r------~l~~~~~i~gwilv~~twil 303 (452)
-+...+.+++++.+.+.++-.++++.++=++++|- .-+.+=.++||++..+.|++
T Consensus 238 ~~Ga~~G~kla~~I~amLIafvaLialiN~~l~~~g~~~g~~~lslq~ilGyif~Plawlm 298 (401)
T TIGR00804 238 SNGALAGVKVVANVAAMLIAFVALLALINGILSWVGGWVGYGGLSFQLIFGYVFRPLAFLM 298 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccCHHHHHHHHHHHHHHHc
Confidence 35667778888888777777777776654444321 01345566888888888876
No 94
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=20.88 E-value=4.3e+02 Score=23.64 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=34.6
Q ss_pred eeehhhhhhhHHHHH--------HHHHHHHHHHHHH----HHHhcccccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 012972 100 WASVGFTGASAFILA--------VIWFISFGLVLVA----HHCCGWRINIKGKESASSQRICLILLIVFTCAAAIGCILL 167 (452)
Q Consensus 100 waSV~fTgipgf~IA--------~lWfi~fGl~l~~----~~cC~crc~~k~~g~~~~~r~slilLllfTi~aiiGcivl 167 (452)
--|+++|.+|++.+. .++++ +|+++.= +.++.= -+.+...+-+...+++.++.+++.++|+.-+
T Consensus 25 vLsIiLT~ipF~~vm~~~~~~~~~~~~i-~~lA~iQi~vqLvyFlH---M~~~~eg~w~~~~~iFt~~i~vivvvGS~Wv 100 (111)
T COG3125 25 VLSIILTLIPFWVVMTGALSSTVTLIII-LGLAVIQILVHLVYFLH---MNTKSEGRWNMGALIFTIFIIVIVVVGSIWV 100 (111)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHH-HHHHHHHHHHHHHHHhc---ccCCcccceehHHHHHHHHHHHHHHHHHHHH
Confidence 457999999976653 34444 4444322 233321 1122222344456666667777778888543
No 95
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=20.68 E-value=3e+02 Score=21.88 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012972 261 ITVAALMLLLSIIGLFL 277 (452)
Q Consensus 261 iivaaVmLlLa~lGlv~ 277 (452)
.+++..+++++++|++.
T Consensus 37 ~~~~iG~~i~G~iGf~I 53 (61)
T PRK09400 37 KVTGLGILLIGLIGFII 53 (61)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455556677777655
No 96
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.44 E-value=1.3e+02 Score=35.17 Aligned_cols=24 Identities=8% Similarity=-0.096 Sum_probs=10.9
Q ss_pred CCCCCCCcccccchhhhhhceEEee
Q 012972 404 DRQCGSYEVSIANASKVLSSVLFIL 428 (452)
Q Consensus 404 ~r~C~~~ev~~~na~~vw~~~~c~~ 428 (452)
+.+|++.... +--.+.|.+|.=.+
T Consensus 565 ~~~~~~~~~~-~~~~~~W~~~s~~l 588 (807)
T PF10577_consen 565 PQQQSGQQGQ-DSQGEGWGRYSNSL 588 (807)
T ss_pred ccccCCCccc-cccccccccccccc
Confidence 3345444332 22235677665443
Done!