Query 012972
Match_columns 452
No_of_seqs 147 out of 175
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 19:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_A Vesicle-associated memb 72.9 21 0.00072 29.0 8.9 22 222-243 33-57 (91)
2 4ev6_A Magnesium transport pro 57.2 62 0.0021 31.6 10.5 20 259-281 281-300 (339)
3 2iub_A CORA, divalent cation t 52.1 30 0.001 34.3 7.4 21 258-281 304-324 (363)
4 3hd7_B Syntaxin-1A; membrane p 46.2 1.3E+02 0.0043 25.0 11.6 19 220-238 47-65 (109)
5 2jp3_A FXYD domain-containing 36.7 22 0.00076 27.8 2.7 26 100-129 14-39 (67)
6 1n7s_C SNAP-25A; neuronal snar 34.8 1E+02 0.0034 24.4 6.4 36 177-212 6-41 (79)
7 2jo1_A Phospholemman; FXYD1, N 34.8 32 0.0011 27.2 3.3 25 108-133 18-42 (72)
8 1deq_A Fibrinogen (alpha chain 34.0 1.4E+02 0.0048 30.6 8.8 75 171-252 62-139 (390)
9 3gm3_A Protein tyrosine kinase 31.4 1.2E+02 0.0039 27.3 6.9 73 170-243 20-102 (153)
10 2zxe_G FXYD10, phospholemman-l 29.6 24 0.00081 28.1 1.8 25 100-128 16-40 (74)
11 3s8f_C Cytochrome C oxidase po 27.5 34 0.0012 23.3 2.1 25 98-125 7-31 (34)
12 3b5n_D Protein transport prote 27.1 2E+02 0.0069 21.7 6.8 22 230-251 42-63 (64)
13 1n7s_D SNAP-25A; neuronal snar 25.9 1.7E+02 0.0056 21.9 6.1 25 229-253 41-65 (66)
14 2i0m_A Phosphate transport sys 24.5 1.6E+02 0.0054 26.2 6.8 64 172-238 3-66 (216)
15 1m1j_A Fibrinogen alpha subuni 23.0 3.2E+02 0.011 28.7 9.3 80 170-256 59-141 (491)
16 1gl2_D Syntaxin 8, vesicle tra 22.9 1.9E+02 0.0066 21.4 6.0 24 229-252 40-63 (65)
17 3zym_A Phosphatidylinositol-bi 22.8 85 0.0029 30.8 4.9 56 192-248 247-302 (310)
18 1l4a_C S-SNAP25 fusion protein 22.4 93 0.0032 25.0 4.2 38 175-212 8-45 (83)
No 1
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=72.87 E-value=21 Score=29.01 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=12.6
Q ss_pred HhHHHHH---HHHHHHHHHHhHHhH
Q 012972 222 DDIDKLN---RDLSTAANTLADKTS 243 (452)
Q Consensus 222 ~~Id~l~---~~LnsaA~~i~~k~~ 243 (452)
+.+|.+. ++|.+.|....+++.
T Consensus 33 ekL~~L~~kt~~L~~~s~~F~~~A~ 57 (91)
T 3hd7_A 33 QKLSELDDRADALQAGASQFETSAA 57 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 567777766655554
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=57.19 E-value=62 Score=31.65 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 012972 259 ALITVAALMLLLSIIGLFLSILR 281 (452)
Q Consensus 259 ~liivaaVmLlLa~lGlv~~i~g 281 (452)
.+-+++++++.+.+ +.|++|
T Consensus 281 ~LTiit~IflP~T~---IaGiyG 300 (339)
T 4ev6_A 281 ILTMVTTIFAVPMW---ITGIYG 300 (339)
T ss_dssp HHHHHHHHSSHHHH---HHHHTT
T ss_pred HHHHHHHHHHHHHH---HHhhcc
Confidence 34555555555554 455555
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=52.07 E-value=30 Score=34.29 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 012972 258 SALITVAALMLLLSIIGLFLSILR 281 (452)
Q Consensus 258 ~~liivaaVmLlLa~lGlv~~i~g 281 (452)
..+-+++++++.+.+ +.|++|
T Consensus 304 k~LTiit~IflP~T~---IaGiyG 324 (363)
T 2iub_A 304 KVLTIIATIFMPLTF---IAGIYG 324 (363)
T ss_dssp HHHHHHHHHHHHHHH---HTTSCC
T ss_pred HHHHHHHHHHHHHHH---HHhhhc
Confidence 345556666666654 455555
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=46.17 E-value=1.3e+02 Score=24.99 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=10.4
Q ss_pred hHHhHHHHHHHHHHHHHHH
Q 012972 220 VMDDIDKLNRDLSTAANTL 238 (452)
Q Consensus 220 vq~~Id~l~~~LnsaA~~i 238 (452)
....+|.++..+.++.+.+
T Consensus 47 Qge~Id~Ie~nv~~a~~~v 65 (109)
T 3hd7_B 47 QGEMIDRIEYNVEHAVDYV 65 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3445666665555555544
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=36.68 E-value=22 Score=27.78 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=18.7
Q ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 012972 100 WASVGFTGASAFILAVIWFISFGLVLVAHH 129 (452)
Q Consensus 100 waSV~fTgipgf~IA~lWfi~fGl~l~~~~ 129 (452)
|+++= +-|.++|++.|+ .||++++.-
T Consensus 14 Y~tLR---igGLifA~vLfi-~GI~iilS~ 39 (67)
T 2jp3_A 14 WESLQ---LGGLIFGGLLCI-AGIALALSG 39 (67)
T ss_dssp GHHHH---HHHHHHHHHHHH-HHHHHHHTT
T ss_pred hHHhe---ecchhhHHHHHH-HHHHHHHcC
Confidence 45554 345899999998 698888743
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=34.79 E-value=1e+02 Score=24.39 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=27.1
Q ss_pred hhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhccc
Q 012972 177 EAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVA 212 (452)
Q Consensus 177 ~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~ 212 (452)
+......+.....+.+++.+++-...+..++.+++.
T Consensus 6 ~~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~ 41 (79)
T 1n7s_C 6 ELEEMQRRADQLADESLESTRRMLQLVEESKDAGIR 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777788889999988888888877754
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=34.77 E-value=32 Score=27.18 Aligned_cols=25 Identities=28% Similarity=0.631 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Q 012972 108 ASAFILAVIWFISFGLVLVAHHCCGW 133 (452)
Q Consensus 108 ipgf~IA~lWfi~fGl~l~~~~cC~c 133 (452)
+-|.++|++.|+ .||++++.-=|.|
T Consensus 18 iGGLifA~vLfi-~GI~iilS~KckC 42 (72)
T 2jo1_A 18 IGGLVIAGILFI-LGILIVLSRRCRC 42 (72)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHH-HHHHHHHcCcccc
Confidence 346899999998 6998888544433
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.02 E-value=1.4e+02 Score=30.56 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=41.3
Q ss_pred cccchhhhhhhHHH---HhccchHHHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHHHHHHHHHHHHhHHhHHhHH
Q 012972 171 QDEFHGEAMHTLKY---VVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSA 247 (452)
Q Consensus 171 n~kfhs~~~~t~d~---Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~~~LnsaA~~i~~k~~~N~~ 247 (452)
+++|..++++..+. .-+...++..-++++.+++..-.. ++ .|....+.++..+|...-..|++|+.++..
T Consensus 62 er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~-q~------~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFA-KA------NNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-hh------ccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35666665544443 334444555666666666654211 11 244455666666777777777777766655
Q ss_pred HHHHH
Q 012972 248 KIRKV 252 (452)
Q Consensus 248 ~I~~~ 252 (452)
.|+.+
T Consensus 135 ~ir~L 139 (390)
T 1deq_A 135 RINLL 139 (390)
T ss_pred HHHHH
Confidence 44443
No 9
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=31.41 E-value=1.2e+02 Score=27.33 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=41.9
Q ss_pred ccccchhhhhhhHHHHhccc--------hHHHHHHHHHHHHHhHhhhhcccccc--cchhhHHhHHHHHHHHHHHHHHHh
Q 012972 170 GQDEFHGEAMHTLKYVVNQS--------DYTVKTLRNVTEYLSLAKTINVAQVF--LPSAVMDDIDKLNRDLSTAANTLA 239 (452)
Q Consensus 170 Gn~kfhs~~~~t~d~Vv~qa--------~~av~tLrnVt~~L~~ak~~~v~~~~--lP~dvq~~Id~l~~~LnsaA~~i~ 239 (452)
.|++.++.+.++++.|+.-+ ++-.+-+++|...|..--+ .|+++. +|+..+..|+-..+-||+...++-
T Consensus 20 t~D~VY~at~~VVkaV~~Ls~~v~~a~~e~Y~~lVK~VGl~LR~Ll~-sVd~~~~~lp~s~~~EIema~k~L~kDM~eLI 98 (153)
T 3gm3_A 20 TDDLVYLNVMELVRAVLELKNELAQLPPEGYVVVVKNVGLTLRKLIG-SVDDLLPSLPSSSRTEIEGTQKLLNKDLAELI 98 (153)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHH-HHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHH-HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655554322 2334555555555544222 234322 788888888887788888777775
Q ss_pred HHhH
Q 012972 240 DKTS 243 (452)
Q Consensus 240 ~k~~ 243 (452)
++.+
T Consensus 99 s~Mk 102 (153)
T 3gm3_A 99 NKMR 102 (153)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=29.60 E-value=24 Score=28.11 Aligned_cols=25 Identities=12% Similarity=0.444 Sum_probs=18.1
Q ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHHHH
Q 012972 100 WASVGFTGASAFILAVIWFISFGLVLVAH 128 (452)
Q Consensus 100 waSV~fTgipgf~IA~lWfi~fGl~l~~~ 128 (452)
|+++=. -|.++|++.|+ .||++++.
T Consensus 16 Y~tLRi---gGLifA~vLfi-~GI~iilS 40 (74)
T 2zxe_G 16 YYRLRV---VGLIVAAVLCV-IGIIILLA 40 (74)
T ss_dssp HHHHHH---HHHHHHHHHHH-HHHHHHTT
T ss_pred hHHhee---ccchhHHHHHH-HHHHHHHc
Confidence 555543 45889999988 68888764
No 11
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=27.47 E-value=34 Score=23.34 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=17.3
Q ss_pred ceeeehhhhhhhHHHHHHHHHHHHHHHH
Q 012972 98 HYWASVGFTGASAFILAVIWFISFGLVL 125 (452)
Q Consensus 98 HYwaSV~fTgipgf~IA~lWfi~fGl~l 125 (452)
-=|+||.+-| ..|-+.|+..|++.+
T Consensus 7 GTl~~V~ilg---~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 7 GALAVILVLT---LTILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred ceehHHHHHH---HHHHHHHHHHHeeee
Confidence 3466776665 568888988776654
No 12
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=27.11 E-value=2e+02 Score=21.71 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=12.7
Q ss_pred HHHHHHHHHhHHhHHhHHHHHH
Q 012972 230 DLSTAANTLADKTSENSAKIRK 251 (452)
Q Consensus 230 ~LnsaA~~i~~k~~~N~~~I~~ 251 (452)
+|+..++....|+..|.+++.+
T Consensus 42 rI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 42 NIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4444566666666666555544
No 13
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=25.90 E-value=1.7e+02 Score=21.85 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHHhHHhHHHHHHHH
Q 012972 229 RDLSTAANTLADKTSENSAKIRKVF 253 (452)
Q Consensus 229 ~~LnsaA~~i~~k~~~N~~~I~~~l 253 (452)
.++...++....+...+.+++++++
T Consensus 41 d~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 41 DRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 3444555566666666666666643
No 14
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=24.47 E-value=1.6e+02 Score=26.19 Aligned_cols=64 Identities=9% Similarity=0.042 Sum_probs=37.3
Q ss_pred ccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHHHHHHHHHHHH
Q 012972 172 DEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTL 238 (452)
Q Consensus 172 ~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~~~LnsaA~~i 238 (452)
..|+.+..+..+.+.+.++.+.+.++...+.+..-.....+.+ .+.-+.+|.++.++......+
T Consensus 3 ~~~~~~l~~l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v---~~~d~~iD~l~~~I~~~~~~l 66 (216)
T 2i0m_A 3 NQFDLELHELEQSFLGLGQLVLETASKALLALASKDKEMAELI---INKDHAINQGQSAIELTCARL 66 (216)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH---HHhHHHHHHHHHHHHHHHHHH
Confidence 4577777788888888888888888887777753211000000 012235666666666665554
No 15
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.03 E-value=3.2e+02 Score=28.67 Aligned_cols=80 Identities=9% Similarity=0.164 Sum_probs=44.7
Q ss_pred ccccchhhhhhhHHH---HhccchHHHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHHHHHHHHHHHHhHHhHHhH
Q 012972 170 GQDEFHGEAMHTLKY---VVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENS 246 (452)
Q Consensus 170 Gn~kfhs~~~~t~d~---Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~~~LnsaA~~i~~k~~~N~ 246 (452)
-++.+..++.+.... .-+...++..-++++.+.+..-.. ++ .|..+.+.++..+|...-..|.+|+.++.
T Consensus 59 qerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~-q~------~dndn~~~e~S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 59 TDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLE-GA------QQLDENYGHVSTELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh-hh------ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444333 334444556666666666654211 11 24455566666777777777887777776
Q ss_pred HHHHHHHHHH
Q 012972 247 AKIRKVFNAV 256 (452)
Q Consensus 247 ~~I~~~l~~v 256 (452)
..|+-+.+.+
T Consensus 132 ~~IrvLq~~l 141 (491)
T 1m1j_A 132 NRIKALQNSI 141 (491)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 16
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.92 E-value=1.9e+02 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhHHhHHhHHHHHHH
Q 012972 229 RDLSTAANTLADKTSENSAKIRKV 252 (452)
Q Consensus 229 ~~LnsaA~~i~~k~~~N~~~I~~~ 252 (452)
.+++..++....+...+.+++.++
T Consensus 40 d~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 40 DDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555556666555555554
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=22.81 E-value=85 Score=30.85 Aligned_cols=56 Identities=11% Similarity=0.228 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHHHHHHHHHHHHhHHhHHhHHH
Q 012972 192 TVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTLADKTSENSAK 248 (452)
Q Consensus 192 av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~~~LnsaA~~i~~k~~~N~~~ 248 (452)
.......+.++++.+|.+++.....| ++.+.=.+.-.+++++-+++.....+|.++
T Consensus 247 f~~Q~e~L~~Fy~~ck~l~l~~~~iP-~L~~~p~d~l~~lq~~i~ev~~im~~ni~~ 302 (310)
T 3zym_A 247 FLTRMTRISEFLKVAEQVGIDRGDIS-GSGSGHMDRVRNLQSEVEGVKNIMTQNVER 302 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCC-CCCcccchHHHHHHHHHHHHHHHHHHhHHH
Confidence 35666778889999999998765444 333332333455555666666666666444
No 18
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=22.39 E-value=93 Score=25.01 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=27.2
Q ss_pred hhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhccc
Q 012972 175 HGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVA 212 (452)
Q Consensus 175 hs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~ 212 (452)
..++.....++....+.+++..|+.-..++.++..++.
T Consensus 8 ~~~~q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~ 45 (83)
T 1l4a_C 8 KTELEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIR 45 (83)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777788888888888877777766654
Done!