Query 012972
Match_columns 452
No_of_seqs 147 out of 175
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 19:47:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012972.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012972hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t72a_ a.7.12.1 (A:) Phosphat 42.3 20 0.0015 30.1 6.2 37 169-205 4-40 (215)
2 d1sumb_ a.7.12.1 (B:) PhoU hom 27.2 64 0.0046 27.1 7.0 64 171-237 1-64 (225)
3 d1ls1a1 a.24.13.1 (A:1-88) Sig 25.4 19 0.0014 27.3 2.6 35 225-259 3-37 (88)
4 d1dx5i2 g.3.11.1 (I:388-422) T 18.7 13 0.00098 23.6 0.3 25 384-412 3-27 (35)
5 d1xwma_ a.7.12.1 (A:) Phosphat 18.3 1.1E+02 0.0077 25.1 6.4 62 174-238 2-63 (212)
6 d1k04a_ a.24.14.1 (A:) FAT dom 17.3 1.9E+02 0.014 23.5 7.4 72 171-243 14-95 (142)
7 d1iyca_ g.31.1.2 (A:) Antifung 14.4 36 0.0026 21.2 1.5 19 404-430 15-33 (36)
8 d1gs9a_ a.24.1.1 (A:) Apolipop 12.9 1.1E+02 0.008 24.1 4.8 26 229-254 92-117 (144)
9 d1wgwa_ a.24.13.1 (A:) Signal 12.2 96 0.007 23.5 4.0 34 227-260 10-43 (99)
10 d1gs9a_ a.24.1.1 (A:) Apolipop 9.6 1.2E+02 0.0086 23.8 3.9 19 227-245 79-97 (144)
No 1
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=42.32 E-value=20 Score=30.10 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=30.9
Q ss_pred cccccchhhhhhhHHHHhccchHHHHHHHHHHHHHhH
Q 012972 169 VGQDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSL 205 (452)
Q Consensus 169 ~Gn~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ 205 (452)
.|.-|||++..+..+.+.+-++.+..+++...+.+..
T Consensus 4 ~~~~~~~~~L~~l~~~l~~M~~~v~~~l~~~~~al~~ 40 (215)
T d1t72a_ 4 GGGMKLFKELEETKEQVIKMAKLVQEAIDKATEALNK 40 (215)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556899999999999999999999998888887764
No 2
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=27.20 E-value=64 Score=27.09 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=39.8
Q ss_pred cccchhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHHHHHHHHHHH
Q 012972 171 QDEFHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANT 237 (452)
Q Consensus 171 n~kfhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~~~LnsaA~~ 237 (452)
|..|+++.++..+.+.+-++.+.+.+++....+..-...-.+.+. +.-+.||+++.++......
T Consensus 1 ~r~~~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~V~---~~d~~Id~l~~~I~~~~~~ 64 (225)
T d1sumb_ 1 NRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVI---ADEEVVDQMEVEIQEKAME 64 (225)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH---HhHHHHHHHHHHHHHHHHH
Confidence 456788888888889999999989988888777642111011000 1224566666666555444
No 3
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=25.37 E-value=19 Score=27.30 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhHHhHHhHHHHHHHHHHHHHH
Q 012972 225 DKLNRDLSTAANTLADKTSENSAKIRKVFNAVRSA 259 (452)
Q Consensus 225 d~l~~~LnsaA~~i~~k~~~N~~~I~~~l~~v~~~ 259 (452)
+++.+++.++...+..+..-+.+.|+++++.+|.+
T Consensus 3 ~~L~~~l~~a~~~l~g~~~i~E~~i~~~l~eir~A 37 (88)
T d1ls1a1 3 QQLSARLQEAIGRLRGRGRITEEDLKATLREIRRA 37 (88)
T ss_dssp HHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 44555555555555555444455566666666654
No 4
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.74 E-value=13 Score=23.62 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=17.7
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 012972 384 YNQTGPVMPPLCYPYDSQLQDRQCGSYEV 412 (452)
Q Consensus 384 ~nqsgp~~P~lCnPf~~~~~~r~C~~~ev 412 (452)
-||+ --|-.|||..++ +-+|+.|-+
T Consensus 3 CNqt--~CPAdCdP~~p~--~C~CPeGyI 27 (35)
T d1dx5i2 3 CNQT--ACPADCDPNTQA--SCECPEGYI 27 (35)
T ss_dssp CCSS--EEECEECTTSTT--CEECCTTEE
T ss_pred cccc--cCCCccCCCCCC--cccCCCceE
Confidence 3554 346799999887 567887754
No 5
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.34 E-value=1.1e+02 Score=25.10 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=36.1
Q ss_pred chhhhhhhHHHHhccchHHHHHHHHHHHHHhHhhhhcccccccchhhHHhHHHHHHHHHHHHHHH
Q 012972 174 FHGEAMHTLKYVVNQSDYTVKTLRNVTEYLSLAKTINVAQVFLPSAVMDDIDKLNRDLSTAANTL 238 (452)
Q Consensus 174 fhs~~~~t~d~Vv~qa~~av~tLrnVt~~L~~ak~~~v~~~~lP~dvq~~Id~l~~~LnsaA~~i 238 (452)
|+++..+..+.+.+-++.+.+.+.+..+.+..-.....+.+. +.-+.||.+..++......+
T Consensus 2 f~~~L~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~v~---~~d~~id~l~~~I~~~~~~~ 63 (212)
T d1xwma_ 2 FADDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVI---DGDGSIDALEEEVNDFALWL 63 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH---HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH---HhhHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888888877766542111011000 11235666666666555443
No 6
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.30 E-value=1.9e+02 Score=23.53 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=43.8
Q ss_pred cccchhhhhhhHHHHh--------ccchHHHHHHHHHHHHHhHhhhhccccc--ccchhhHHhHHHHHHHHHHHHHHHhH
Q 012972 171 QDEFHGEAMHTLKYVV--------NQSDYTVKTLRNVTEYLSLAKTINVAQV--FLPSAVMDDIDKLNRDLSTAANTLAD 240 (452)
Q Consensus 171 n~kfhs~~~~t~d~Vv--------~qa~~av~tLrnVt~~L~~ak~~~v~~~--~lP~dvq~~Id~l~~~LnsaA~~i~~ 240 (452)
|++.++.+..+++.|. .+.++-..-+++|...|..--+ .+++. .+|...+..|+-...-||+...++.+
T Consensus 14 ~D~Vy~~t~~VVkaV~~ls~~v~~~~~~~Y~~lVK~VG~~Lr~Ll~-svD~~~~~lp~~~~~eIema~klLskDm~eLi~ 92 (142)
T d1k04a_ 14 NDKVYENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLALRTLLA-TVDETIPLLPASTHREIEMAQKLLNSDLGELIN 92 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHH-HHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHH-HHHHHhccCcHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555442 2344555667777666654322 24443 27888888888888888888777765
Q ss_pred HhH
Q 012972 241 KTS 243 (452)
Q Consensus 241 k~~ 243 (452)
+.+
T Consensus 93 ~Mk 95 (142)
T d1k04a_ 93 KMK 95 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 7
>d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}
Probab=14.43 E-value=36 Score=21.25 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=14.1
Q ss_pred CCCCCCCcccccchhhhhhceEEeecc
Q 012972 404 DRQCGSYEVSIANASKVLSSVLFILNA 430 (452)
Q Consensus 404 ~r~C~~~ev~~~na~~vw~~~~c~~~~ 430 (452)
..+|+.| +||..|-|.+.-
T Consensus 15 rsncpkg--------kvwngfdckspf 33 (36)
T d1iyca_ 15 RSNCPKG--------KVWNGFDCKSPF 33 (36)
T ss_dssp TSCCCSS--------CEEETTEEECGG
T ss_pred ccCCCCc--------ceecCccccCcc
Confidence 3458876 579999998643
No 8
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=12.93 E-value=1.1e+02 Score=24.08 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhHHhHHhHHHHHHHHH
Q 012972 229 RDLSTAANTLADKTSENSAKIRKVFN 254 (452)
Q Consensus 229 ~~LnsaA~~i~~k~~~N~~~I~~~l~ 254 (452)
.+|...++++..++..|...++.-+.
T Consensus 92 ~kl~~~~eel~~~~~~~~ee~r~~l~ 117 (144)
T d1gs9a_ 92 GRLVQYRGEVQAMLGQSTEELRVRLA 117 (144)
T ss_dssp HHHHHHHHHHHTSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454455544444444333
No 9
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.24 E-value=96 Score=23.52 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHHhHHhHHHHHHHHHHHHHHH
Q 012972 227 LNRDLSTAANTLADKTSENSAKIRKVFNAVRSAL 260 (452)
Q Consensus 227 l~~~LnsaA~~i~~k~~~N~~~I~~~l~~v~~~l 260 (452)
|..+++++...+..+..-+-+.|+..++.++.+|
T Consensus 10 L~~~i~~a~~~l~~~~~i~E~~I~~~l~eI~~AL 43 (99)
T d1wgwa_ 10 LGRKITSALRSLSNATIINEEVLNAMLKEVCTAL 43 (99)
T ss_dssp HHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4456666666666666555667888888887763
No 10
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=9.58 E-value=1.2e+02 Score=23.85 Aligned_cols=19 Identities=5% Similarity=0.099 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhHHhHHh
Q 012972 227 LNRDLSTAANTLADKTSEN 245 (452)
Q Consensus 227 l~~~LnsaA~~i~~k~~~N 245 (452)
+..+|.....++.+|....
T Consensus 79 lr~~l~~~lee~r~kl~~~ 97 (144)
T d1gs9a_ 79 AQARLGADMEDVRGRLVQY 97 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
Done!