Query 012974
Match_columns 452
No_of_seqs 227 out of 1413
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01001 putative inner membra 100.0 1.5E-53 3.2E-58 460.1 24.8 242 100-367 547-794 (795)
2 PRK02944 OxaA-like protein pre 100.0 1.2E-52 2.5E-57 412.2 24.8 209 98-345 31-243 (255)
3 PRK00145 putative inner membra 100.0 2.4E-52 5.2E-57 402.8 24.4 210 104-346 2-213 (223)
4 PRK01318 membrane protein inse 100.0 2.4E-51 5.1E-56 437.0 24.3 209 100-350 298-512 (521)
5 PRK01315 putative inner membra 100.0 1.7E-50 3.6E-55 408.6 28.4 240 101-349 5-261 (329)
6 PRK01622 OxaA-like protein pre 100.0 1.1E-50 2.3E-55 398.5 25.7 212 98-348 32-253 (256)
7 PRK02463 OxaA-like protein pre 100.0 2.8E-50 6E-55 404.3 25.5 208 100-347 33-252 (307)
8 TIGR03592 yidC_oxa1_cterm memb 100.0 2.8E-49 6.1E-54 369.8 21.1 181 130-344 1-181 (181)
9 PRK03449 putative inner membra 100.0 3.9E-48 8.4E-53 388.0 24.6 234 104-348 2-272 (304)
10 PRK02201 putative inner membra 100.0 4.2E-48 9.2E-53 394.4 23.4 222 100-345 100-341 (357)
11 PF02096 60KD_IMP: 60Kd inner 100.0 3.5E-48 7.6E-53 364.9 19.8 193 130-346 2-197 (198)
12 COG0706 YidC Preprotein transl 100.0 1.4E-47 3.1E-52 386.2 23.2 215 100-349 84-300 (314)
13 PRK00247 putative inner membra 100.0 2.1E-47 4.5E-52 396.3 21.8 251 104-354 2-285 (429)
14 PRK02654 putative inner membra 100.0 3E-38 6.4E-43 316.2 21.2 113 100-219 2-118 (375)
15 KOG1239 Inner membrane protein 99.9 3.3E-24 7.1E-29 221.0 17.3 204 100-344 78-290 (372)
16 KOG1239 Inner membrane protein 99.0 4.2E-10 9.1E-15 116.8 5.6 238 100-343 4-245 (372)
17 COG1422 Predicted membrane pro 95.6 0.07 1.5E-06 51.4 9.0 88 131-220 46-142 (201)
18 TIGR03593 yidC_nterm membrane 76.2 2 4.3E-05 44.5 2.7 23 100-122 343-365 (366)
19 PF01956 DUF106: Integral memb 64.7 18 0.00039 33.4 6.1 63 154-219 43-109 (168)
20 PRK00247 putative inner membra 61.7 1.4E+02 0.003 32.4 12.9 17 296-312 224-240 (429)
21 COG1422 Predicted membrane pro 56.2 2.1E+02 0.0045 28.1 11.8 65 155-222 76-148 (201)
22 PF09973 DUF2208: Predicted me 55.7 33 0.00071 34.2 6.5 80 127-220 21-111 (233)
23 PF05280 FlhC: Flagellar trans 54.5 20 0.00043 34.1 4.6 37 183-219 38-85 (175)
24 PRK01001 putative inner membra 43.6 4.2E+02 0.009 31.1 13.4 61 154-221 596-662 (795)
25 KOG3817 Uncharacterized conser 38.6 1.3E+02 0.0029 32.1 7.9 29 296-324 250-278 (452)
26 COG1377 FlhB Flagellar biosynt 37.1 1.5E+02 0.0032 31.5 8.2 41 134-179 196-239 (363)
27 PF09958 DUF2192: Uncharacteri 36.4 60 0.0013 32.3 4.9 45 159-203 9-53 (231)
28 TIGR02829 spore_III_AE stage I 32.8 6.4E+02 0.014 27.0 13.4 66 270-340 133-200 (381)
29 PF05190 MutS_IV: MutS family 30.0 74 0.0016 25.6 3.8 36 163-198 2-37 (92)
30 KOG4075 Cytochrome c oxidase, 28.7 1E+02 0.0022 29.3 4.8 61 158-218 49-123 (167)
31 PRK09108 type III secretion sy 28.3 1.4E+02 0.003 31.5 6.3 31 144-179 201-234 (353)
32 TIGR01404 FlhB_rel_III type II 27.7 1.4E+02 0.0031 31.2 6.2 29 146-179 200-231 (342)
33 PRK12772 bifunctional flagella 26.7 1.3E+02 0.0029 33.9 6.2 30 145-179 463-495 (609)
34 KOG1532 GTPase XAB1, interacts 26.5 2.6E+02 0.0057 29.2 7.6 90 100-201 217-309 (366)
35 TIGR00328 flhB flagellar biosy 24.9 1.7E+02 0.0036 30.8 6.1 31 144-179 199-232 (347)
36 PRK12722 transcriptional activ 24.3 3.7E+02 0.0081 26.0 7.9 37 183-219 38-85 (187)
37 PRK08156 type III secretion sy 24.1 1.8E+02 0.0038 30.9 6.2 31 144-179 194-227 (361)
38 PF06570 DUF1129: Protein of u 22.4 6.8E+02 0.015 23.8 16.3 65 155-220 26-99 (206)
39 KOG1631 Translocon-associated 22.4 45 0.00097 33.3 1.3 13 404-416 220-232 (261)
40 PRK12468 flhB flagellar biosyn 22.3 2.1E+02 0.0045 30.6 6.3 28 147-179 209-239 (386)
41 PRK13109 flhB flagellar biosyn 22.2 3.6E+02 0.0077 28.6 8.0 30 145-179 209-241 (358)
42 KOG3817 Uncharacterized conser 22.1 2.5E+02 0.0054 30.1 6.6 69 131-199 277-351 (452)
43 PRK12860 transcriptional activ 21.8 4E+02 0.0086 25.9 7.5 37 183-219 38-85 (189)
44 PRK02201 putative inner membra 21.6 8.1E+02 0.018 26.0 10.5 116 100-221 96-225 (357)
45 COG3105 Uncharacterized protei 21.2 3.3E+02 0.0071 25.1 6.4 34 133-174 17-50 (138)
46 PRK05702 flhB flagellar biosyn 21.1 2.5E+02 0.0054 29.7 6.6 28 147-179 209-239 (359)
47 PF06936 Selenoprotein_S: Sele 20.4 1.9E+02 0.0041 28.0 5.0 13 130-142 35-47 (190)
48 PF14208 DUF4320: Domain of un 20.0 5.5E+02 0.012 22.8 7.6 59 133-197 4-62 (116)
No 1
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.5e-53 Score=460.11 Aligned_cols=242 Identities=31% Similarity=0.569 Sum_probs=200.2
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 012974 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (452)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~e 179 (452)
.+|||++|+.|+.+++.++...++.+ ..+||+|||++||+||++++||+++|+++++||+.|||+|++||+|||+|++
T Consensus 547 ~~GWf~fI~~Pia~~L~~ll~~fh~l--~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q 624 (795)
T PRK01001 547 FRGFFSFITEPFAALLFIIMKFFKFL--TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK 624 (795)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence 36999999999876665544443322 2379999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccc--cccCCcCchhHhhhccCCCcccccc-
Q 012974 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLLP- 256 (452)
Q Consensus 180 k~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gfl--W~~dLs~pD~i~a~~~g~~~sw~~p- 256 (452)
++|+|+|+|||||||||++||+|+|+||||||++|++++++.. +...+|+ |++||+.+|++ ++|..|
T Consensus 625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie--LRgasFLpgWI~DLSapDpl--------f~~~~~i 694 (795)
T PRK01001 625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL--LRGASFIPGWIDNLTAPDVL--------FSWETPI 694 (795)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH--hcCCchhhhhHhhccCCCcc--------ccccccc
Confidence 9999999999999999999999999999999999999998754 7788897 99999999853 234333
Q ss_pred -CCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhH
Q 012974 257 -FDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV 333 (452)
Q Consensus 257 -~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~--~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl 333 (452)
|.| + ++.||||+++++||++++++.... ..++.+++++.|+++||+|+++++.++|+||+|||++||+
T Consensus 695 ~FiG-------d--~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl 765 (795)
T PRK01001 695 WFIG-------N--EFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSML 765 (795)
T ss_pred cccc-------c--chhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 233 2 568999999999999998864321 1123344556777899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccccchhhhHHhhhhcc
Q 012974 334 LSTAQQVWLRKLGGAKPVVTENASEIITAGRAKR 367 (452)
Q Consensus 334 ~si~Q~~ilrk~~~~~p~~~~~~~~~~~~~~~k~ 367 (452)
++++||+++++.++.+. .+++++++++|.
T Consensus 766 ~SI~QQ~iI~k~~~~kK-----i~a~ie~nkkk~ 794 (795)
T PRK01001 766 LGVIQQWVTNKILDSKH-----LKNEVVPNKKKH 794 (795)
T ss_pred HHHHHHHHHHhhcchhH-----HHHHHHhhhhcc
Confidence 99999999999744333 356677766543
No 2
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=1.2e-52 Score=412.24 Aligned_cols=209 Identities=28% Similarity=0.637 Sum_probs=187.2
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcC
Q 012974 98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177 (452)
Q Consensus 98 ~~~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d 177 (452)
+.+|.|+++|+.|++++++++|..+ | .+||+|||++|+++|++++|++++|+++++||+++|||+++||+||++|
T Consensus 31 ~~~g~~~~~~~~p~~~~l~~i~~~~---g--~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~ 105 (255)
T PRK02944 31 KSTGFWNEYFVYPLSQLITYFANLF---G--SNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSK 105 (255)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHh---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCC
Confidence 5667788999999999999999864 3 4699999999999999999999999999999999999999999999874
Q ss_pred ----HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCCccc
Q 012974 178 ----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW 253 (452)
Q Consensus 178 ----~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw 253 (452)
++++|+|+++|||||||||++||+|+|+|+|||||+|++++++.+ +.++||+|+ ||+.+|
T Consensus 106 ~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~D------------- 169 (255)
T PRK02944 106 DQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQAD------------- 169 (255)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcch-------------
Confidence 567899999999999999999999999999999999999998854 788999999 999876
Q ss_pred cccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhH
Q 012974 254 LLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV 333 (452)
Q Consensus 254 ~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl 333 (452)
||++||+++++++++++++..... ...+.+|+.|++++|+|+++|+.++|+|+++||++||+
T Consensus 170 ----------------p~~iLPil~~~~~~~~~~~~~~~~--~~~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~ 231 (255)
T PRK02944 170 ----------------PYYILPIVAGITTFIQQKLMMAGT--AGQNPQMAMMLWLMPIMILIFAINFPAALSLYWVVGNI 231 (255)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhcccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988753211 11223567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 012974 334 LSTAQQVWLRKL 345 (452)
Q Consensus 334 ~si~Q~~ilrk~ 345 (452)
|+++|++++++.
T Consensus 232 ~~i~Q~~~l~~~ 243 (255)
T PRK02944 232 FMIAQTYLIKGP 243 (255)
T ss_pred HHHHHHHHHcCc
Confidence 999999999873
No 3
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2.4e-52 Score=402.78 Aligned_cols=210 Identities=32% Similarity=0.613 Sum_probs=186.5
Q ss_pred hHHHHHHHHHHHHHHHhhccccC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHHH
Q 012974 104 FGFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERI 181 (452)
Q Consensus 104 f~~i~~p~e~vL~~l~~~l~~~g--lp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~ek~ 181 (452)
+++|.+++..+++++|+++..++ .+++||+||+++|+++|++++|++++|+++++||+++|||+++||+|||+|++++
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~ 81 (223)
T PRK00145 2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL 81 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence 35667777777777777654331 2456999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCCccccccCCCCC
Q 012974 182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHP 261 (452)
Q Consensus 182 q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw~~p~~G~p 261 (452)
|+|+++|||||||||++||+|+|+|+|||+++|+++|+++. +.++||+|++||+.+|
T Consensus 82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~~--~~~~~flW~~dLt~~D--------------------- 138 (223)
T PRK00145 82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLTG--INGVSFLWIKDLAKPD--------------------- 138 (223)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCccChhhccCcc---------------------
Confidence 99999999999999999999999999999999999999864 7889999999999887
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHH
Q 012974 262 PLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVW 341 (452)
Q Consensus 262 ~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl~si~Q~~i 341 (452)
||++||+++++++|++++.+... +..+.+.++.|++++|+++++++.++|+||++||++||+|+++|+++
T Consensus 139 --------p~~iLPil~~~~~~l~~~~~~~~--~~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~ 208 (223)
T PRK00145 139 --------ITWILPILSGATTYLSGYLMTKA--DSSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYF 208 (223)
T ss_pred --------hHHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999886543 12334467889999999999999999999999999999999999999
Q ss_pred HHHhc
Q 012974 342 LRKLG 346 (452)
Q Consensus 342 lrk~~ 346 (452)
++++.
T Consensus 209 l~~~~ 213 (223)
T PRK00145 209 IKKLE 213 (223)
T ss_pred HHhhc
Confidence 99863
No 4
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=2.4e-51 Score=436.96 Aligned_cols=209 Identities=38% Similarity=0.751 Sum_probs=189.2
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 012974 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (452)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~e 179 (452)
++||+++|+.|+.++|+++|.++ | +||+|||++|+++|++++|++++|+++++||+.+||+|++||+||++|++
T Consensus 298 ~~G~~~~~~~pl~~~L~~i~~~~---g---~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~ 371 (521)
T PRK01318 298 DYGWLWFITKPLFWLLDFLHSFV---G---NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQ 371 (521)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhc---c---cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHH
Confidence 58999999999999999999764 2 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccc-cccCCcCchhHhhhccCCCccccccCC
Q 012974 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPFD 258 (452)
Q Consensus 180 k~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gfl-W~~dLs~pD~i~a~~~g~~~sw~~p~~ 258 (452)
++|+|+|+|||||||||++||+|+|+|+||||++|++++++.+ +.+++|+ ||+||+.+|
T Consensus 372 k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D------------------ 431 (521)
T PRK01318 372 KMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD------------------ 431 (521)
T ss_pred HHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc------------------
Confidence 9999999999999999999999999999999999999999864 7889998 999999987
Q ss_pred CCCCCCcchhHHHHHH-----HHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhH
Q 012974 259 GHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV 333 (452)
Q Consensus 259 G~p~~gw~d~~py~IL-----PIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl 333 (452)
||+|| ||+++++++++++++..+ .+++| +.+|.+||+|+++|+.++|+||+|||++||+
T Consensus 432 -----------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~~~~~~~~~PagL~lYW~~sn~ 495 (521)
T PRK01318 432 -----------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLIFTFFFLSFPAGLVLYWIVNNL 495 (521)
T ss_pred -----------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 999999999999986433 35553 3456669999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 012974 334 LSTAQQVWLRKLGGAKP 350 (452)
Q Consensus 334 ~si~Q~~ilrk~~~~~p 350 (452)
++++|++++++.++.+.
T Consensus 496 ~si~Q~~~l~~~~~~~~ 512 (521)
T PRK01318 496 LTIIQQYLINRRLEKKK 512 (521)
T ss_pred HHHHHHHHHhhhcccch
Confidence 99999999999755443
No 5
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.7e-50 Score=408.64 Aligned_cols=240 Identities=26% Similarity=0.449 Sum_probs=182.0
Q ss_pred CCchHHHHHHHHHHH----HHHHhhcccc-C--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHH
Q 012974 101 GGWFGFISEAMEFVL----KILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR 173 (452)
Q Consensus 101 ~gwf~~i~~p~e~vL----~~l~~~l~~~-g--lp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeK 173 (452)
++||++|++|++|++ .++|.+++.+ | .+++||+|||++|+++|++++||+++|+++++||+++|||+++|++|
T Consensus 5 ~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~k 84 (329)
T PRK01315 5 ADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEK 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 579999999988877 4456555432 2 13469999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCCccc
Q 012974 174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW 253 (452)
Q Consensus 174 yk~d~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw 253 (452)
|++|++++++|+++|||||||||++||+|+|+|+||||++|++||++++. .... .+|.+++... .-.+...|
T Consensus 85 yk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~-~~~~-~~~~~~~~~s-~~~~~~fg----- 156 (329)
T PRK01315 85 YKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASR-GDGI-GPINPPLLES-FRHAHIFG----- 156 (329)
T ss_pred HHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc-cchhhhHHHh-hhcccccc-----
Confidence 99999999999999999999999999999999999999999999987642 1111 2233332210 00000011
Q ss_pred cccCCCCC----CCCc-chhHHHHHHHHHHHHHHHHHhhh-cC----CCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhH
Q 012974 254 LLPFDGHP----PLGW-HDTAAYLVLPVLLVVSQYASMEL-MK----PPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSG 323 (452)
Q Consensus 254 ~~p~~G~p----~~gw-~d~~py~ILPIL~~vs~~ls~~i-~~----~~~~~~p~qk~mk~mm~imPlmi~~f~~~~Pag 323 (452)
.|+.+.. ..|+ ...+.++|||+++++++|++++. +. +....+++.+++|.|+++||+|+++|+.++|+|
T Consensus 157 -~~L~~~f~~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaG 235 (329)
T PRK01315 157 -APLAATFLQALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVG 235 (329)
T ss_pred -ccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1211100 0112 22345689999999999988653 21 122235666778889999999999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCCC
Q 012974 324 LSIYWFTNNVLSTAQQVWLRKLGGAK 349 (452)
Q Consensus 324 L~LYWitSnl~si~Q~~ilrk~~~~~ 349 (452)
|+|||++||+|+++|++++.+.++.+
T Consensus 236 L~LYW~~snl~si~Qq~~v~r~~p~p 261 (329)
T PRK01315 236 VLFYWLTSNVWTMGQQFYVIRNNPTP 261 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999977765443
No 6
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=1.1e-50 Score=398.54 Aligned_cols=212 Identities=27% Similarity=0.522 Sum_probs=187.5
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhccHHHHHHHHH
Q 012974 98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR 173 (452)
Q Consensus 98 ~~~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks----~~KM~~LqPel~~IqeK 173 (452)
+.+|+|.+++++|+.++++++|+.+ |. +||+||+++|+++|++++|++++|+|+ ++||+++|||+++||+|
T Consensus 32 ~~~~~~~~~~~~p~~~ll~~l~~~~---~~--~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k 106 (256)
T PRK01622 32 HSDGFFDHYFVYPFSFLIQFVAHHI---GG--SYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK 106 (256)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHh---cc--cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence 4667788999999999999999875 33 599999999999999999999999999 89999999999999999
Q ss_pred hhc--CHH---HHHHHHHHHHHHcCCCCCC-CchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhcc
Q 012974 174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247 (452)
Q Consensus 174 yk~--d~e---k~q~E~~kLyKk~gvnPl~-GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~ 247 (452)
|++ |++ ++|+|+++|||||||||++ ||+|+|+|+|||+|+|+++|++. ++.++||+|+ ||+.+|
T Consensus 107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D------- 176 (256)
T PRK01622 107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD------- 176 (256)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence 987 443 5789999999999999999 99999999999999999999974 4889999999 898764
Q ss_pred CCCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHH
Q 012974 248 GSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIY 327 (452)
Q Consensus 248 g~~~sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LY 327 (452)
+|||++++++++++++++.+......+++.++.|++++|+++++++.++|+|+++|
T Consensus 177 ------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~lY 232 (256)
T PRK01622 177 ------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVLY 232 (256)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999987653322223345678899999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhcCC
Q 012974 328 WFTNNVLSTAQQVWLRKLGGA 348 (452)
Q Consensus 328 WitSnl~si~Q~~ilrk~~~~ 348 (452)
|++||+|+++|++++++.+..
T Consensus 233 W~~snl~si~Q~~~l~~~~~~ 253 (256)
T PRK01622 233 WITGGLFLMGQTIVLRKVMER 253 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999997443
No 7
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=2.8e-50 Score=404.28 Aligned_cols=208 Identities=26% Similarity=0.485 Sum_probs=181.1
Q ss_pred CCCch-HHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhccHHHHHHHHHh
Q 012974 100 NGGWF-GFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRY 174 (452)
Q Consensus 100 ~~gwf-~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks----~~KM~~LqPel~~IqeKy 174 (452)
.+||+ ++++.|+.++++++|+.+ | .+||+|||++|++||++++||+++|+++ ++||+.+|||+++||+||
T Consensus 33 ~~g~~~~~l~~p~~~~l~~i~~~~---g--~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Ky 107 (307)
T PRK02463 33 PTGFIWNFLGAPMSYFIDYFANNL---G--LGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERL 107 (307)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHc---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 35665 799999999999999764 3 3699999999999999999999988865 689999999999999999
Q ss_pred hcC-----HHHHHHHHHHHHHHcCCCCCC--CchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhcc
Q 012974 175 AGN-----QERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247 (452)
Q Consensus 175 k~d-----~ek~q~E~~kLyKk~gvnPl~--GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~ 247 (452)
|++ ++++|+|+++|||||||||++ ||+|+|+|+|||+|+|++++.. +++.+++|+|+ ||+.||
T Consensus 108 k~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p~------- 177 (307)
T PRK02463 108 KNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSPS------- 177 (307)
T ss_pred hcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCchh-------
Confidence 863 235689999999999999998 8999999999999999999975 56889999999 887653
Q ss_pred CCCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHH
Q 012974 248 GSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIY 327 (452)
Q Consensus 248 g~~~sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LY 327 (452)
++||++++++++++++++..... +.+.++||.|+++||+|+++|++++|+||+||
T Consensus 178 ------------------------~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~Pim~~~~~~~~PagL~lY 232 (307)
T PRK02463 178 ------------------------LVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMPIMMVVFSFSSPAGVGLY 232 (307)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999887543222 33445688999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhcC
Q 012974 328 WFTNNVLSTAQQVWLRKLGG 347 (452)
Q Consensus 328 WitSnl~si~Q~~ilrk~~~ 347 (452)
|++||+|+++|++++++++.
T Consensus 233 W~~snlfsi~Q~~i~~~~~~ 252 (307)
T PRK02463 233 WLVGGFFSIIQQLITTYILK 252 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998753
No 8
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=2.8e-49 Score=369.78 Aligned_cols=181 Identities=40% Similarity=0.772 Sum_probs=168.2
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 012974 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (452)
Q Consensus 130 swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPI 209 (452)
|||+||+++|+++|++++|++++|+++++||+++|||+++|++||++|++++++|+++|||||||||++||+|+|+|+||
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi 80 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhc
Q 012974 210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELM 289 (452)
Q Consensus 210 figLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~ 289 (452)
|+++|+++|++. ++.++||+|++||+.+| ||++||++++++++++++++
T Consensus 81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D-----------------------------p~~iLPii~~~~~~~~~~~~ 129 (181)
T TIGR03592 81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD-----------------------------PYYILPILMGATMFLQQKLS 129 (181)
T ss_pred HHHHHHHHHhhH--HhccCCCcCccccCccc-----------------------------HHHHHHHHHHHHHHHHHHhc
Confidence 999999999975 48899999999999887 78999999999999999986
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 012974 290 KPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 344 (452)
Q Consensus 290 ~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl~si~Q~~ilrk 344 (452)
....+ + .++++.|++++|+|+++++.++|+|+++||++||+|+++|++++++
T Consensus 130 ~~~~~-~--~~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 130 PSGPP-D--PAQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred CCCCC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 54322 2 2356778899999999999999999999999999999999999875
No 9
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3.9e-48 Score=387.99 Aligned_cols=234 Identities=23% Similarity=0.400 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHHHHHhhccc-cC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHH
Q 012974 104 FGFISEAMEFVLKILKDGIDA-VH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180 (452)
Q Consensus 104 f~~i~~p~e~vL~~l~~~l~~-~g--lp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~ek 180 (452)
+.++.+|+.+++.++|+++.. +| .+.+||+|||++|+++|++++|++++|+++++||+++|||+++||+||++|+++
T Consensus 2 l~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~ 81 (304)
T PRK03449 2 LDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQK 81 (304)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHH
Confidence 567889999999999887643 12 133699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhh--cccc---------------------CccccccCCc
Q 012974 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT---------------------EGFFWIPSLS 237 (452)
Q Consensus 181 ~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~--~l~~---------------------~gflW~~dLs 237 (452)
+++|+++|||||||||++||+|+|+|+|||+++|+++|+++.. ++.. ++|+|..
T Consensus 82 ~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~--- 158 (304)
T PRK03449 82 MALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR--- 158 (304)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh---
Confidence 9999999999999999999999999999999999999998542 1111 1222211
Q ss_pred CchhHhhhccCCCcc-ccc-cC---CCCCCCC-cchhHHHHHHHHHHHHHHHHHhhhcCCC----CCCCHHhH-HHHHHH
Q 012974 238 GPTTIAARQSGSGIS-WLL-PF---DGHPPLG-WHDTAAYLVLPVLLVVSQYASMELMKPP----QTDDPAQK-NTLLVF 306 (452)
Q Consensus 238 ~pD~i~a~~~g~~~s-w~~-p~---~G~p~~g-w~d~~py~ILPIL~~vs~~ls~~i~~~~----~~~~p~qk-~mk~mm 306 (452)
..|..++ |.. +. +....++ ++..+.+++|||++++++|++++++... +..++.+. ++|.|+
T Consensus 159 --------~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M~ 230 (304)
T PRK03449 159 --------LFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLAL 230 (304)
T ss_pred --------hcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHHH
Confidence 1111111 110 00 0000000 1111234678999999999998764211 11233333 447889
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHHhcCC
Q 012974 307 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA 348 (452)
Q Consensus 307 ~imPlmi~~f~~~~PagL~LYWitSnl~si~Q~~ilrk~~~~ 348 (452)
++||+|++++++++|+||.|||++||+|+++||+++++..+.
T Consensus 231 ~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~~~~ 272 (304)
T PRK03449 231 WVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGKIDK 272 (304)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999875443
No 10
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.2e-48 Score=394.37 Aligned_cols=222 Identities=19% Similarity=0.374 Sum_probs=182.7
Q ss_pred CCC-chHHHHHHHHHHHHHHH--hhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc
Q 012974 100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG 176 (452)
Q Consensus 100 ~~g-wf~~i~~p~e~vL~~l~--~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~ 176 (452)
++| |+++|++|+.+++.+++ ..+. ...+++||+|||++|+++|++++|++++|+++++||+++|||+++||+||++
T Consensus 100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~ 178 (357)
T PRK02201 100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD 178 (357)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 455 67999999999999996 2221 1234569999999999999999999999999999999999999999999997
Q ss_pred C------HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCC
Q 012974 177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG 250 (452)
Q Consensus 177 d------~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~ 250 (452)
| ++++|+|+++|||||||||++||+|+|+|+|||+|+|++++.+.+ +....|+|+ ||+.+|...
T Consensus 179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flgi-dLs~~~~~~------- 248 (357)
T PRK02201 179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLGI-DLSATSWQE------- 248 (357)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCccc-ccCCCChhh-------
Confidence 6 678999999999999999999999999999999999999998754 778899999 899876210
Q ss_pred ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcC----C----C---CCCCHHhHHHHHHHHHHHHHHHHHhhh
Q 012974 251 ISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----P----P---QTDDPAQKNTLLVFKFLPLMIGYFSLS 319 (452)
Q Consensus 251 ~sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~----~----~---~~~~p~qk~mk~mm~imPlmi~~f~~~ 319 (452)
. + .+..+|+++++++++++++++.+++ . . ..++++++.++.|+++||+++++++++
T Consensus 249 ---~--~--------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~ 315 (357)
T PRK02201 249 ---I--F--------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVI 315 (357)
T ss_pred ---h--c--------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1112567777777877777765432 1 0 111223455778999999999999999
Q ss_pred hhhHhHHHHHHhhHHHHHHHHHHHHh
Q 012974 320 VPSGLSIYWFTNNVLSTAQQVWLRKL 345 (452)
Q Consensus 320 ~PagL~LYWitSnl~si~Q~~ilrk~ 345 (452)
+|+||.|||++||+|+++||++++++
T Consensus 316 ~PaGL~LYW~~snl~tI~Qq~~i~~~ 341 (357)
T PRK02201 316 FAAGVQIYWIIGGIWTILQTLGIHYF 341 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985
No 11
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=3.5e-48 Score=364.89 Aligned_cols=193 Identities=39% Similarity=0.730 Sum_probs=177.0
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 012974 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (452)
Q Consensus 130 swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPI 209 (452)
|||+||+++|+++|++++|++++|+++++||+++|||+++|++||++|++++++|++++||||||||++||+|+|+|+||
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi 81 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI 81 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh-hccccCccccccCCcCchhHhhhccCCCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Q 012974 210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL 288 (452)
Q Consensus 210 figLy~aLr~ma~-~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i 288 (452)
|+++|+++|++++ +++.++||+|++||+.+|.. ...||++||+++++++++++++
T Consensus 82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~------------------------~~~p~~iLPil~~~~~~~~~~~ 137 (198)
T PF02096_consen 82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT------------------------MGLPYFILPILAGASMFLNQEL 137 (198)
T ss_pred HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc------------------------chhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 67889999999999998831 1238899999999999999998
Q ss_pred cCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 012974 289 MKP--PQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG 346 (452)
Q Consensus 289 ~~~--~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl~si~Q~~ilrk~~ 346 (452)
+.. ...++.+++.+|.|++++|+++++++.++|+|+++||++||+|+++|++++|+.+
T Consensus 138 ~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~ 197 (198)
T PF02096_consen 138 SMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRPF 197 (198)
T ss_pred HHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 642 2233455667888999999999999999999999999999999999999999864
No 12
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-47 Score=386.25 Aligned_cols=215 Identities=36% Similarity=0.643 Sum_probs=188.1
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhh-cCH
Q 012974 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GNQ 178 (452)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk-~d~ 178 (452)
+.|||.++..++..++.+++... |+ +||++||++|++||++++|++.+|.++++||+.+||++++|||||| +|+
T Consensus 84 ~~~~f~~~~~~~~~~~~~~~~~~---g~--n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~ 158 (314)
T COG0706 84 DYGWFWNILAPLFPLLLFIDSFS---GL--NWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK 158 (314)
T ss_pred chhhHHHHHHHHHHHHHHHHHhc---Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence 57899999988888888885433 33 7999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccc-cccCCcCchhHhhhccCCCccccccC
Q 012974 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF 257 (452)
Q Consensus 179 ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gfl-W~~dLs~pD~i~a~~~g~~~sw~~p~ 257 (452)
+++|+|+|+|||||||||++||+|+|+|+|||+++|+++++..+ +...+|+ |+.||+.+|+
T Consensus 159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl~~~dp---------------- 220 (314)
T COG0706 159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDLSLPDP---------------- 220 (314)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcccCCCC----------------
Confidence 99999999999999999999999999999999999999998864 7777777 9999998762
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHH
Q 012974 258 DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTA 337 (452)
Q Consensus 258 ~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl~si~ 337 (452)
+ ..+++||++++++|++++++....+ +++.++++.|+++||+++.++++++|+||.+||++||+|+++
T Consensus 221 ---------~--~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~ 288 (314)
T COG0706 221 ---------D--YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSIL 288 (314)
T ss_pred ---------c--hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Confidence 0 1236699999999999998765322 333446678899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 012974 338 QQVWLRKLGGAK 349 (452)
Q Consensus 338 Q~~ilrk~~~~~ 349 (452)
||+++++.+..+
T Consensus 289 Qq~ii~~~~~~~ 300 (314)
T COG0706 289 QQYILNKPLEKK 300 (314)
T ss_pred HHHHHhhhhhhh
Confidence 999999974443
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=2.1e-47 Score=396.25 Aligned_cols=251 Identities=24% Similarity=0.373 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHHHHHHhhccc-cCCC--cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcC---
Q 012974 104 FGFISEAMEFVLKILKDGIDA-VHVP--YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN--- 177 (452)
Q Consensus 104 f~~i~~p~e~vL~~l~~~l~~-~glp--~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d--- 177 (452)
+++|++|+.+++.++|.++.. +|++ ++||++|+++||+||++++||+++|+++++||+.+||++++||+||+++
T Consensus 2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~ 81 (429)
T PRK00247 2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE 81 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence 568899999999999998773 5643 3499999999999999999999999999999999999999999999874
Q ss_pred --HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhh--hccccCccccccCCcCchh---HhhhccCCC
Q 012974 178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTT---IAARQSGSG 250 (452)
Q Consensus 178 --~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~--~~l~~~gflW~~dLs~pD~---i~a~~~g~~ 250 (452)
++++++|+++|||+|||||++||+|+|+|+|||||+|++|++|+. +|+.+..+.|+.-|+..|. +.+..+|..
T Consensus 82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp 161 (429)
T PRK00247 82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP 161 (429)
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence 356889999999999999999999999999999999999999975 4555444445555555441 112223332
Q ss_pred ccccc--cCCCCCCCCc-chhHHHHHHHHHH--HHHHHHHhhhcCC----C-CCCCH----HhHHHHHHHHHHHHHHHHH
Q 012974 251 ISWLL--PFDGHPPLGW-HDTAAYLVLPVLL--VVSQYASMELMKP----P-QTDDP----AQKNTLLVFKFLPLMIGYF 316 (452)
Q Consensus 251 ~sw~~--p~~G~p~~gw-~d~~py~ILPIL~--~vs~~ls~~i~~~----~-~~~~p----~qk~mk~mm~imPlmi~~f 316 (452)
++-.+ +-++.-.+|. ...+.+++||+++ ++.+++++.+... . ..+++ +++.|..|++++|+|++++
T Consensus 162 L~~~~sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~~ 241 (429)
T PRK00247 162 LPAYVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSL 241 (429)
T ss_pred cccccccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22100 0000000111 0122356788544 4455566654321 1 11223 4455677789999999987
Q ss_pred hhh--hhhHhHHHHHHhhHHHHHHHHH----HHHhcCCCCcccc
Q 012974 317 SLS--VPSGLSIYWFTNNVLSTAQQVW----LRKLGGAKPVVTE 354 (452)
Q Consensus 317 ~~~--~PagL~LYWitSnl~si~Q~~i----lrk~~~~~p~~~~ 354 (452)
+++ +|+||+|||++||+|+++||++ ++++|...+.+.+
T Consensus 242 g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~ 285 (429)
T PRK00247 242 GLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKE 285 (429)
T ss_pred HHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 776 7999999999999999999994 5566655555443
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3e-38 Score=316.20 Aligned_cols=113 Identities=33% Similarity=0.604 Sum_probs=105.3
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHH----HHHHHhh
Q 012974 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA 175 (452)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~----~IqeKyk 175 (452)
|.||..+..+++.++++++|.++ + +||+|||++|++||++++||+++|+|+++||+.+||+|+ +||+||+
T Consensus 2 dfG~g~i~~~il~~iL~f~y~~v-----g-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK 75 (375)
T PRK02654 2 DFGIGFISNNVMLPILDFFYGIV-----P-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK 75 (375)
T ss_pred CcchHHHHHhHHHHHHHHHHHhc-----c-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence 46886666788999999998753 3 799999999999999999999999999999999999985 7999999
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 012974 176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (452)
Q Consensus 176 ~d~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ 219 (452)
+|++++|+|+|+|||||| ||++||+|+|+|+|||+++|++||.
T Consensus 76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~ 118 (375)
T PRK02654 76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRG 118 (375)
T ss_pred CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 9999999999999999999999996
No 15
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-24 Score=221.03 Aligned_cols=204 Identities=21% Similarity=0.367 Sum_probs=171.4
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---
Q 012974 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG--- 176 (452)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~--- 176 (452)
..+|.. +.-+...+..+|... |+| ||.+|+..|+.+|.+++|+.+.++++.+|++.+.|+|+++.++.+.
T Consensus 78 ~~~~~p--~~~lq~~l~~~h~~~---g~p--ww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~ 150 (372)
T KOG1239|consen 78 LSSWRP--VATLQNELERLHVYS---GLP--WWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQ 150 (372)
T ss_pred hcccCc--hhHHHHHHHHHHHHh---CCc--chHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhc
Confidence 345554 344566777777654 666 7899999999999999999999999999999999999999998864
Q ss_pred --C-HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhh--hccccCccccccCCcCchhHhhhccCCCc
Q 012974 177 --N-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSGI 251 (452)
Q Consensus 177 --d-~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~--~~l~~~gflW~~dLs~pD~i~a~~~g~~~ 251 (452)
+ ....|+|+++++++||++| .....+++|.|+|+++|.+||.|+. +++.++|++||+||+.+|
T Consensus 151 ~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d----------- 218 (372)
T KOG1239|consen 151 DNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD----------- 218 (372)
T ss_pred cccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC-----------
Confidence 1 2356778999999999999 9988888999999999999999985 567888999999999886
Q ss_pred cccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCC-CCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 012974 252 SWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFT 330 (452)
Q Consensus 252 sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~-~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWit 330 (452)
|++++|+++.+++...++++..... .+.....|+.+++++|+.++.++.++|.|+++||+
T Consensus 219 ------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl- 279 (372)
T KOG1239|consen 219 ------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL- 279 (372)
T ss_pred ------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh-
Confidence 7789999999999998887654221 12344567788899999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 012974 331 NNVLSTAQQVWLRK 344 (452)
Q Consensus 331 Snl~si~Q~~ilrk 344 (452)
|+++|..++|.
T Consensus 280 ---~s~~~~~vlr~ 290 (372)
T KOG1239|consen 280 ---FSLVQGLVLRS 290 (372)
T ss_pred ---hHHHHHHHhHH
Confidence 99999999655
No 16
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=4.2e-10 Score=116.81 Aligned_cols=238 Identities=24% Similarity=0.241 Sum_probs=200.5
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 012974 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (452)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~e 179 (452)
.+.|+..+....+..+..++......+.++.++.++.+.|+++.+...|+...+..+..-|...+|....+...+.....
T Consensus 4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p 83 (372)
T KOG1239|consen 4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP 83 (372)
T ss_pred cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence 57899999999988888888888778888889999999999999999999999999999999999999999888888655
Q ss_pred --HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCCccccccC
Q 012974 180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF 257 (452)
Q Consensus 180 --k~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw~~p~ 257 (452)
.+|.++.++|+-.|++.+++|+...+-++.+++.|.+.+. .++...+.++.|++.+...-..++.+.+.++.|..+.
T Consensus 84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~ 162 (372)
T KOG1239|consen 84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ 162 (372)
T ss_pred hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence 8999999999999999999999999999999999999987 5555667889999988887767777777778888876
Q ss_pred -CCCCCCCcc-hhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHH
Q 012974 258 -DGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLS 335 (452)
Q Consensus 258 -~G~p~~gw~-d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl~s 335 (452)
+++...||. +...+.+++..+.++.|+.++.|..+..+.+.+ ....+|-+..+.-...+.++..||+++++..
T Consensus 163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~ 237 (372)
T KOG1239|consen 163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPDPLYILPGITLATLTLFIEL 237 (372)
T ss_pred HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence 666666777 666777888888889999988876443323322 4456677777788888999999999999999
Q ss_pred HHHHHHHH
Q 012974 336 TAQQVWLR 343 (452)
Q Consensus 336 i~Q~~ilr 343 (452)
-.|+....
T Consensus 238 ~~~~~~~~ 245 (372)
T KOG1239|consen 238 GAETGLSS 245 (372)
T ss_pred HHHhhhhc
Confidence 99987765
No 17
>COG1422 Predicted membrane protein [Function unknown]
Probab=95.60 E-value=0.07 Score=51.44 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc-----CH---HHHHHHHHHHHHHcCCCCCC-Cch
Q 012974 131 YGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPLA-GCL 201 (452)
Q Consensus 131 wg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~-----d~---ek~q~E~~kLyKk~gvnPl~-GcL 201 (452)
.-++|+++.+++=+.+-=+ -+-..-..||+++|-+++|.||++++ |. +|+|+++++...... ..++ .+-
T Consensus 46 p~lvilV~avi~gl~~~i~-~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~-elmk~qfk 123 (201)
T COG1422 46 PHLVILVAAVITGLYITIL-QKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQR-ELMKMQFK 123 (201)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 4567777666665433222 23344567999999999999998853 43 344443332221110 0011 234
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 012974 202 PTLATIPVWIGLYQALSNV 220 (452)
Q Consensus 202 P~LiQiPIfigLy~aLr~m 220 (452)
||+.++++.|-+|-=++..
T Consensus 124 PM~~~~v~tI~~F~Wl~~~ 142 (201)
T COG1422 124 PMLYISVLTIPFFAWLRWF 142 (201)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7776666666665555543
No 18
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=76.21 E-value=2 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=20.8
Q ss_pred CCCchHHHHHHHHHHHHHHHhhc
Q 012974 100 NGGWFGFISEAMEFVLKILKDGI 122 (452)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~l~~~l 122 (452)
++|||.||+.||.|+|+++|.++
T Consensus 343 DyGw~~~iakPlf~lL~~~~~~v 365 (366)
T TIGR03593 343 DYGWLWFIAKPLFWLLDFFHSLV 365 (366)
T ss_pred eeecHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999753
No 19
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=64.73 E-value=18 Score=33.44 Aligned_cols=63 Identities=8% Similarity=0.096 Sum_probs=27.4
Q ss_pred HHHHHHHHhccHHHHHHHHHhhc-CHHHHHHH---HHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 012974 154 VESTLAMQNLQPKIKAIQQRYAG-NQERIQLE---TSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (452)
Q Consensus 154 ~ks~~KM~~LqPel~~IqeKyk~-d~ek~q~E---~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ 219 (452)
-+...++++++-+.++++++... ..++.+++ +++..++- ....+-|+++.+-+++.+|..++.
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~mK~~~~~~v~~i~i~~wi~~ 109 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEM---MMMMMKPMFVTMVPQIPIFYWINY 109 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33445555566666666553332 23344433 33333333 111223444444445555444443
No 20
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=61.69 E-value=1.4e+02 Score=32.41 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=8.1
Q ss_pred CHHhHHHHHHHHHHHHH
Q 012974 296 DPAQKNTLLVFKFLPLM 312 (452)
Q Consensus 296 ~p~qk~mk~mm~imPlm 312 (452)
..++..|..++-+|+++
T Consensus 224 ~k~m~~m~~~~Pim~~~ 240 (429)
T PRK00247 224 LKFLIVMAILAPIFPLS 240 (429)
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 45556554444444433
No 21
>COG1422 Predicted membrane protein [Function unknown]
Probab=56.19 E-value=2.1e+02 Score=28.09 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=43.3
Q ss_pred HHHHHHHhccHHHHHHHH--------HhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 012974 155 ESTLAMQNLQPKIKAIQQ--------RYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN 222 (452)
Q Consensus 155 ks~~KM~~LqPel~~Iqe--------Kyk~d~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~ 222 (452)
+-+..|+++|-|..|-++ |.+..++++.+.+.++.|.. ..|+ ..-.++.||+|.=+++-+.....
T Consensus 76 ~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q-fkPM--~~~~v~tI~~F~Wl~~~~~~~~~ 148 (201)
T COG1422 76 ELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ-FKPM--LYISVLTIPFFAWLRWFVGTGGY 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhH--HHHHHHHHHHHHHHHHHHccCcc
Confidence 335567778888888776 23344555555566666654 2354 23566799999999999998653
No 22
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=55.70 E-value=33 Score=34.18 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHH---Hhhc-C-------HHHHHHHHHHHHHHcCCC
Q 012974 127 VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQ---RYAG-N-------QERIQLETSRLYRQAGVN 195 (452)
Q Consensus 127 lp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~Iqe---Kyk~-d-------~ek~q~E~~kLyKk~gvn 195 (452)
+|..|+..+++-.+++=++++=.+.++.+ .-.++.+|+.+ -|++ | .++.++|+++..|..
T Consensus 21 ~p~y~~~~filYfiv~~~i~~~~~~Rs~r------r~~~~~~Ei~~g~~L~eEk~~~kl~~kD~el~~E~~~~~k~~--- 91 (233)
T PF09973_consen 21 FPQYYFEVFILYFIVFFGIMIVMGIRSYR------RGRKPRSEISKGRPLFEEKNANKLMEKDKELQKEYKKQMKAS--- 91 (233)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcc------CCcccHHHHhcCCcccccccHHHHHHhCHHHHHHHHHHHHHH---
Confidence 46667777777777777777777766666 22233444411 1111 1 134567777777764
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHh
Q 012974 196 PLAGCLPTLATIPVWIGLYQALSNV 220 (452)
Q Consensus 196 Pl~GcLP~LiQiPIfigLy~aLr~m 220 (452)
+++ |+-+||++.++..+++.
T Consensus 92 ----~~~-ll~~~i~ii~~~~~~~~ 111 (233)
T PF09973_consen 92 ----MMN-LLILPIYIILFFLLYPY 111 (233)
T ss_pred ----HHH-HHHHHHHHHHHHHHHHh
Confidence 333 44588888777777653
No 23
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=54.47 E-value=20 Score=34.10 Aligned_cols=37 Identities=32% Similarity=0.608 Sum_probs=21.9
Q ss_pred HHHHHHHHH-cCCCCCCCchHHH----------HHHHHHHHHHHHHHH
Q 012974 183 LETSRLYRQ-AGVNPLAGCLPTL----------ATIPVWIGLYQALSN 219 (452)
Q Consensus 183 ~E~~kLyKk-~gvnPl~GcLP~L----------iQiPIfigLy~aLr~ 219 (452)
.++.+|||| +|++|-+|.+|.- ++.-+|+.+|+.+.+
T Consensus 38 ~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~ 85 (175)
T PF05280_consen 38 ERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRK 85 (175)
T ss_dssp HHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHh
Confidence 446799999 8999999988743 566678888877774
No 24
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=43.55 E-value=4.2e+02 Score=31.08 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=37.1
Q ss_pred HHHHHHHHhccHHHHHHHHHhhcCHHH----HHHHHHHHHHHcCCCCCCCchHHHHHHHHH--HHHHHHHHHhh
Q 012974 154 VESTLAMQNLQPKIKAIQQRYAGNQER----IQLETSRLYRQAGVNPLAGCLPTLATIPVW--IGLYQALSNVA 221 (452)
Q Consensus 154 ~ks~~KM~~LqPel~~IqeKyk~d~ek----~q~E~~kLyKk~gvnPl~GcLP~LiQiPIf--igLy~aLr~ma 221 (452)
.++.+-|++ |++||-+.+.=++| .++.+++.++-|.=+ ||=|+---+|++ +-+|.++.++.
T Consensus 596 iKS~kSmaK----Mq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~---GVNPl~GCLPmLIQmPIFfALY~vL 662 (795)
T PRK01001 596 AWSIRSMRR----MQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTN---KVNPITGCLPLLIQLPFLIAMFDLL 662 (795)
T ss_pred HHHHHHHHH----HHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHHHHHH
Confidence 555555544 44555544443333 344556777777655 676777777888 67788887653
No 25
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.64 E-value=1.3e+02 Score=32.06 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=22.0
Q ss_pred CHHhHHHHHHHHHHHHHHHHHhhhhhhHh
Q 012974 296 DPAQKNTLLVFKFLPLMIGYFSLSVPSGL 324 (452)
Q Consensus 296 ~p~qk~mk~mm~imPlmi~~f~~~~PagL 324 (452)
+..+...++++..+.+.+++|+..+|...
T Consensus 250 ~RS~~ilmWtLqli~lvl~Yfsvq~p~~a 278 (452)
T KOG3817|consen 250 PRSQTILMWTLQLIGLVLAYFSVQHPSAA 278 (452)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcccHHHH
Confidence 44555667888889999999998888543
No 26
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.11 E-value=1.5e+02 Score=31.53 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 012974 134 AIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (452)
Q Consensus 134 aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~---d~e 179 (452)
+++++.+++=++=++...++.....||.. +|++++||+ ||+
T Consensus 196 ~~~~~~liia~~D~~~qr~~~~k~lkMtK-----qEVKdE~K~sEGdPe 239 (363)
T COG1377 196 AVLLLLLIVAAFDYFYQRFQYIKKLKMTK-----QEVKDEYKQSEGDPE 239 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcH-----HHHHHHHhhccCChh
Confidence 44444555555556666666666666653 777888874 765
No 27
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=36.39 E-value=60 Score=32.34 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=31.9
Q ss_pred HHHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHH
Q 012974 159 AMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPT 203 (452)
Q Consensus 159 KM~~LqPel~~IqeKyk~d~ek~q~E~~kLyKk~gvnPl~GcLP~ 203 (452)
|++.+---+.++-++-.-|++++-..+++.|+++|+.|+.|.-|.
T Consensus 9 RI~va~~l~~~il~~~~~~R~~lv~~L~~~Y~~~gIeP~RG~s~~ 53 (231)
T PF09958_consen 9 RIEVATDLWSRILRGEVLDREELVELLREVYEENGIEPFRGLSPP 53 (231)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCcCCCCCcc
Confidence 344444444455444233788888999999999999999998754
No 28
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=32.81 E-value=6.4e+02 Score=26.99 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhh--hhhhHhHHHHHHhhHHHHHHHH
Q 012974 270 AYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSL--SVPSGLSIYWFTNNVLSTAQQV 340 (452)
Q Consensus 270 py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~--~~PagL~LYWitSnl~si~Q~~ 340 (452)
.|++|-.++.-+.+....+.. +.-+.+..+|.-++|+.+...+. ..-+|..+|=+.=-+..+.+++
T Consensus 133 ~Ylvli~i~l~sF~~~~~~a~-----~~I~~m~~FM~al~P~~~~lva~sGg~~SAa~f~p~il~~i~~~~~l 200 (381)
T TIGR02829 133 CYMVLIIIALKSFHVAMSYAK-----EAIESMVDFMLALLPLLLALLASSGGVTSAAFFDPVILFSINTTGKV 200 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665555555444321 22233445666778887655443 3455555663443444444443
No 29
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=30.05 E-value=74 Score=25.55 Aligned_cols=36 Identities=11% Similarity=0.355 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCC
Q 012974 163 LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (452)
Q Consensus 163 LqPel~~IqeKyk~d~ek~q~E~~kLyKk~gvnPl~ 198 (452)
+-|+++++++.|.+-.+.++....++-+++|++.+.
T Consensus 2 ~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk 37 (92)
T PF05190_consen 2 FDEELDELREEYEEIEEELEELLEEIRKKLGIPSLK 37 (92)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 458999999999998888888889999999986553
No 30
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=28.69 E-value=1e+02 Score=29.26 Aligned_cols=61 Identities=20% Similarity=0.363 Sum_probs=43.7
Q ss_pred HHHHhccHHHHHHHHHhhcCHHHH-HHHHHHHHH----------HcCCCCCC---CchHHHHHHHHHHHHHHHHH
Q 012974 158 LAMQNLQPKIKAIQQRYAGNQERI-QLETSRLYR----------QAGVNPLA---GCLPTLATIPVWIGLYQALS 218 (452)
Q Consensus 158 ~KM~~LqPel~~IqeKyk~d~ek~-q~E~~kLyK----------k~gvnPl~---GcLP~LiQiPIfigLy~aLr 218 (452)
.+..++++++++|+||-|.|-.++ ..|..+||+ +++.|=++ ||...++-+-|++++|.-++
T Consensus 49 ~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~ 123 (167)
T KOG4075|consen 49 IRFRELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNRGSNEWKTVFGVAGFFLGLTISVILFGKVR 123 (167)
T ss_pred hhhhcccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccCCCCcccchhhHHHHHHHHHHHHHHHHhhe
Confidence 356778999999999999875444 356777773 23334344 55677888888999998887
No 31
>PRK09108 type III secretion system protein HrcU; Validated
Probab=28.34 E-value=1.4e+02 Score=31.48 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=18.4
Q ss_pred HHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 012974 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (452)
Q Consensus 144 llllPL~ikq~ks~~KM~~LqPel~~IqeKyk~---d~e 179 (452)
++=+++..++.....||.. +|++++||+ ||+
T Consensus 201 ~~D~~~qr~~~~k~lkMSk-----qEvK~E~K~~EGdP~ 234 (353)
T PRK09108 201 AADWKIQRWLFIRDNRMSK-----DEVKREHKESEGDPH 234 (353)
T ss_pred HHHHHHHHHHHHHHCCCCH-----HHHHHHHHhccCCHH
Confidence 3344555555555555543 677778874 765
No 32
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=27.73 E-value=1.4e+02 Score=31.23 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=16.5
Q ss_pred hhhccHHHHHHHHHHHhccHHHHHHHHHhh---cCHH
Q 012974 146 TFPLTKKQVESTLAMQNLQPKIKAIQQRYA---GNQE 179 (452)
Q Consensus 146 llPL~ikq~ks~~KM~~LqPel~~IqeKyk---~d~e 179 (452)
=+++..++.....||. -+|++++|| |||+
T Consensus 200 D~~~qr~~~~k~lkMs-----kqEvKdE~Ke~EGdP~ 231 (342)
T TIGR01404 200 DFAFQRYLFMKDLKMS-----KDEVKREYKEQEGDPE 231 (342)
T ss_pred HHHHHHHHHHHhCCCC-----HHHHHHHHHhccCCHH
Confidence 3444455555555554 367777777 4765
No 33
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=26.71 E-value=1.3e+02 Score=33.92 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=17.4
Q ss_pred HhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 012974 145 ATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (452)
Q Consensus 145 lllPL~ikq~ks~~KM~~LqPel~~IqeKyk~---d~e 179 (452)
+=+++..++.....||. -+|++++||+ |||
T Consensus 463 ~D~~~q~~~~~k~lkMs-----kqEvK~E~Ke~EGdP~ 495 (609)
T PRK12772 463 ADYVYQKYQYNKDLRMT-----KQEVKEEYKQDEGDPQ 495 (609)
T ss_pred HHHHHHHHHHHHhCCCC-----HHHHHHHHHhccCCHH
Confidence 33444455555555554 3777888874 765
No 34
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=26.51 E-value=2.6e+02 Score=29.21 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=61.4
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCc--chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc-
Q 012974 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPY--SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG- 176 (452)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~--swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~- 176 (452)
..++++.+++.|...|+-+|..+...|+.. .+|..=++..|- ..--..+...+|+.++.++.-+.
T Consensus 217 ~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~------------~~vdEy~~~ykp~~Ek~k~~k~~~ 284 (366)
T KOG1532|consen 217 ESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD------------ESVDEYEEEYKPEYEKKKAEKRLA 284 (366)
T ss_pred ccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH------------HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 467889999999999999998887776531 255555544433 23345677788888776553322
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCch
Q 012974 177 NQERIQLETSRLYRQAGVNPLAGCL 201 (452)
Q Consensus 177 d~ek~q~E~~kLyKk~gvnPl~GcL 201 (452)
+-++.++++.+|.|.-+++++.+-.
T Consensus 285 ee~~k~k~le~l~kdm~~~~~~~d~ 309 (366)
T KOG1532|consen 285 EEERKKKQLEKLMKDMHVSPLKNDV 309 (366)
T ss_pred HHHhhhhhHHHHHhccCcccccCCC
Confidence 3334456678999999999985533
No 35
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=24.87 E-value=1.7e+02 Score=30.83 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=17.7
Q ss_pred HHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 012974 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (452)
Q Consensus 144 llllPL~ikq~ks~~KM~~LqPel~~IqeKyk~---d~e 179 (452)
++=++...++.....||. -+|++++||+ ||+
T Consensus 199 ~~D~~~qr~~~~k~lrMs-----kqEVKdE~K~~EGdP~ 232 (347)
T TIGR00328 199 VFDYFFQRWQYIKSLKMT-----KQEVKDELKQSEGDPE 232 (347)
T ss_pred HHHHHHHHHHHHHhCCCC-----HHHHHHHHHhccCCHH
Confidence 333444455555555554 4777888874 765
No 36
>PRK12722 transcriptional activator FlhC; Provisional
Probab=24.31 E-value=3.7e+02 Score=26.01 Aligned_cols=37 Identities=30% Similarity=0.509 Sum_probs=27.6
Q ss_pred HHHHHHHHHc-CCCCCCCchHH----------HHHHHHHHHHHHHHHH
Q 012974 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (452)
Q Consensus 183 ~E~~kLyKk~-gvnPl~GcLP~----------LiQiPIfigLy~aLr~ 219 (452)
.++.+||||- |++|=+|.+|. =++--+|+.+|+.+..
T Consensus 38 ~rl~~Lyke~~G~spPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (187)
T PRK12722 38 ERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIYQFLLK 85 (187)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcccchhhHHHHHHHHHHHHHH
Confidence 3467899998 99999998882 2566677777777764
No 37
>PRK08156 type III secretion system protein SpaS; Validated
Probab=24.14 E-value=1.8e+02 Score=30.90 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=17.6
Q ss_pred HHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 012974 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (452)
Q Consensus 144 llllPL~ikq~ks~~KM~~LqPel~~IqeKyk~---d~e 179 (452)
++=+++..++.....||. -+|++++||+ ||+
T Consensus 194 ~~D~~~Qr~~~~k~lkMS-----kqEvKdE~Ke~EGdP~ 227 (361)
T PRK08156 194 ILDFIAEYFLHMKDMKMD-----KQEVKREYKEQEGNPE 227 (361)
T ss_pred HHHHHHHHHHHHHHCCCC-----HHHHHHHHHhccCCHH
Confidence 333444455555544554 3677788874 775
No 38
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.41 E-value=6.8e+02 Score=23.83 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=30.2
Q ss_pred HHHHHHHhccHHHHHHHHH-------hhcCHHHHHHHHH-HHHHHcCCCCCC-CchHHHHHHHHHHHHHHHHHHh
Q 012974 155 ESTLAMQNLQPKIKAIQQR-------YAGNQERIQLETS-RLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNV 220 (452)
Q Consensus 155 ks~~KM~~LqPel~~IqeK-------yk~d~ek~q~E~~-kLyKk~gvnPl~-GcLP~LiQiPIfigLy~aLr~m 220 (452)
+...-..++-|+|=|=|++ |. ||++..+|.- ++=|+...+--. -++..+-..-+|+++|..+...
T Consensus 26 ~~e~~L~eil~~LleaQk~G~tA~~lfG-~P~~~a~eli~~~~k~~~~~~~~~~~~~~ld~~L~~~~if~~~~gi 99 (206)
T PF06570_consen 26 EIEELLEEILPHLLEAQKKGKTARQLFG-DPKEYADELIKPLPKPKKKNKNSNPWLMALDNSLLFFGIFSLLFGI 99 (206)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHcC-CHHHHHHHHhccccCCcccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555554543 33 7766554443 232222222101 1233444445677777777654
No 39
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.38 E-value=45 Score=33.31 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=9.1
Q ss_pred ccCCCCCCCCccc
Q 012974 404 NSASDSEGESDGE 416 (452)
Q Consensus 404 ~~~~~~~~~~~~~ 416 (452)
+.-+.+++++|+|
T Consensus 220 E~GTas~~~vd~e 232 (261)
T KOG1631|consen 220 EVGTASKDAVDDE 232 (261)
T ss_pred eecccCccccccc
Confidence 4445667888888
No 40
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.30 E-value=2.1e+02 Score=30.58 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=15.2
Q ss_pred hhccHHHHHHHHHHHhccHHHHHHHHHhh---cCHH
Q 012974 147 FPLTKKQVESTLAMQNLQPKIKAIQQRYA---GNQE 179 (452)
Q Consensus 147 lPL~ikq~ks~~KM~~LqPel~~IqeKyk---~d~e 179 (452)
+++..++.....||. -+|++++|| |||+
T Consensus 209 ~~~qr~~~~k~lkMS-----kqEvKdE~K~~EGdP~ 239 (386)
T PRK12468 209 VFYQITSHIKKLRMT-----KQDIRDEFKNQEGDPH 239 (386)
T ss_pred HHHHHHHHHHHCCCC-----HHHHHHHHHhccCCHH
Confidence 334444444444443 467777777 4765
No 41
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.20 E-value=3.6e+02 Score=28.55 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=17.5
Q ss_pred HhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 012974 145 ATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (452)
Q Consensus 145 lllPL~ikq~ks~~KM~~LqPel~~IqeKyk~---d~e 179 (452)
+=+++..++.....||. -+|++++||+ ||+
T Consensus 209 ~D~~~q~~~~~k~lkMS-----kqEVKdE~Ke~EGdP~ 241 (358)
T PRK13109 209 LDLVWARFHWRRSLRMT-----KQEIKDEHKQAEGDPS 241 (358)
T ss_pred HHHHHHHHHHHHHCCCC-----HHHHHHHHHhccCCHH
Confidence 33444555555555554 4677788874 765
No 42
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.10 E-value=2.5e+02 Score=30.14 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHH--HHHhhc--CHH--HHHHHHHHHHHHcCCCCCCC
Q 012974 131 YGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAI--QQRYAG--NQE--RIQLETSRLYRQAGVNPLAG 199 (452)
Q Consensus 131 wg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~I--qeKyk~--d~e--k~q~E~~kLyKk~gvnPl~G 199 (452)
...|+|+..++...+-+|+....+..-+--+..+|--.++ +|.|.. +.| +.-.|..+.-++-+|.+|+-
T Consensus 277 ~a~A~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~rRlLtEeEYeeQaeveT~kaLaeLReycnkpd~~~Wkv 351 (452)
T KOG3817|consen 277 AAIAAIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKRRLLTEEEYEEQAEVETSKALAELREYCNKPDCKQWKV 351 (452)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Confidence 3457788888888999999875543322222233322222 345543 222 33466788888889888863
No 43
>PRK12860 transcriptional activator FlhC; Provisional
Probab=21.79 E-value=4e+02 Score=25.87 Aligned_cols=37 Identities=32% Similarity=0.537 Sum_probs=28.4
Q ss_pred HHHHHHHHHc-CCCCCCCchHH----------HHHHHHHHHHHHHHHH
Q 012974 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (452)
Q Consensus 183 ~E~~kLyKk~-gvnPl~GcLP~----------LiQiPIfigLy~aLr~ 219 (452)
.++.+||||- |++|=+|.+|. =++--+|+.+|+.+..
T Consensus 38 ~rl~~Lyke~~G~SpPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (189)
T PRK12860 38 DRLIRLYKEVRGVSPPKGMLPFSTDWFMTWLANIHASLFYNAYRFLKN 85 (189)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcCchhhhHHHHHHHHHHHHHh
Confidence 3467999998 99999998885 2566677888877764
No 44
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=21.64 E-value=8.1e+02 Score=25.98 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=66.8
Q ss_pred CCCc-hHHHHHHHHHHHHHHHhhcc-ccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcC
Q 012974 100 NGGW-FGFISEAMEFVLKILKDGID-AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177 (452)
Q Consensus 100 ~~gw-f~~i~~p~e~vL~~l~~~l~-~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d 177 (452)
+.-| +|++...+.+-+.++...+. ..++..++|++-++..+++=+++==+.+-- +.|...-+-+|++||.+.+.=
T Consensus 96 ~~~~~~G~f~~~~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl---~~k~~~s~~km~~lqPel~~I 172 (357)
T PRK02201 96 SWTWKYGPFYGLFVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLI---TFKSTFNQEKQEELQGKKAKI 172 (357)
T ss_pred eeeeccchHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHH
Confidence 3444 57777777776766666553 234666788887766666554442222222 233333334566666666553
Q ss_pred HHHH----------HHHHHHHHHHcCCCCCCCchHHHHHHHHH--HHHHHHHHHhh
Q 012974 178 QERI----------QLETSRLYRQAGVNPLAGCLPTLATIPVW--IGLYQALSNVA 221 (452)
Q Consensus 178 ~ek~----------q~E~~kLyKk~gvnPl~GcLP~LiQiPIf--igLy~aLr~ma 221 (452)
++|. ++..+|.++-|.=+ ||=|+---+|.+ +-+|.++.++.
T Consensus 173 q~Kyk~~~~d~~~~~k~q~e~~~Lykk~---ginP~~gclP~LiQ~Pif~aly~vl 225 (357)
T PRK02201 173 DAKYKDYKKDKQMKQRKQQEIQELYKKH---NISPFSPFVQMFVTLPIFIAVYRVV 225 (357)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 22345666666544 777776667877 57788888764
No 45
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.21 E-value=3.3e+02 Score=25.09 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHh
Q 012974 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRY 174 (452)
Q Consensus 133 ~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKy 174 (452)
+.|++..+++|+ +-.+.+++.| +|-||++.+.+.
T Consensus 17 vGi~IG~li~Rl-----t~~~~k~q~~---~q~ELe~~K~~l 50 (138)
T COG3105 17 VGIIIGALIARL-----TNRKLKQQQK---LQYELEKVKAQL 50 (138)
T ss_pred HHHHHHHHHHHH-----cchhhhhHHH---HHHHHHHHHHHH
Confidence 445555555554 3344444433 444666655443
No 46
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.09 E-value=2.5e+02 Score=29.65 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=16.2
Q ss_pred hhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 012974 147 FPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (452)
Q Consensus 147 lPL~ikq~ks~~KM~~LqPel~~IqeKyk~---d~e 179 (452)
+++..++.....||. -+|++++||+ ||+
T Consensus 209 ~~~qr~~~~k~lkMs-----kqEVKdE~Ke~EGdP~ 239 (359)
T PRK05702 209 VPFQRWQYLKKLKMT-----KQEVKDEHKQSEGDPE 239 (359)
T ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHhccCCHH
Confidence 344444444444544 3677788874 775
No 47
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.41 E-value=1.9e+02 Score=28.02 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHH
Q 012974 130 SYGFAIILLTVIV 142 (452)
Q Consensus 130 swg~aIIllTliV 142 (452)
+|||-|++.+|++
T Consensus 35 ~yGWyil~~~I~l 47 (190)
T PF06936_consen 35 SYGWYILFGCILL 47 (190)
T ss_dssp -------------
T ss_pred HhCHHHHHHHHHH
Confidence 3555555544444
No 48
>PF14208 DUF4320: Domain of unknown function (DUF4320)
Probab=20.04 E-value=5.5e+02 Score=22.78 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCC
Q 012974 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPL 197 (452)
Q Consensus 133 ~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~ek~q~E~~kLyKk~gvnPl 197 (452)
.+++++.++++++.+=.+..|. ....-++-+.-|+..+=..+......+|-++.|.+|.
T Consensus 4 ~~~~~ial~v~v~~~~i~~~ql------~~~a~e~v~~aE~~Gg~~~e~~~~~~~l~~k~g~~~~ 62 (116)
T PF14208_consen 4 IAMFLIALIVSVFPVFIQKQQL------NTFAQELVRQAEREGGVTSETVDRIEDLSEKTGLDPM 62 (116)
T ss_pred HHHHHHHHHHHHHhhhhhHHHH------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCCCC
Confidence 4667777777776655444443 3344566666677766333444456688888999987
Done!