Query 012974
Match_columns 452
No_of_seqs 227 out of 1413
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 19:50:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3blc_A Inner membrane protein 33.1 1.2 4.1E-05 44.2 -6.4 23 100-122 305-327 (330)
2 3iyz_A Aquaporin-4; water tran 20.1 45 0.0015 33.6 2.2 27 324-350 247-273 (340)
3 1e91_A Paired amphipathic heli 18.9 1.2E+02 0.0042 24.1 4.3 30 166-195 13-44 (85)
4 4g9j_C Synthetic peptide, seri 17.7 30 0.001 21.6 0.2 7 444-450 3-9 (26)
5 3ukx_C Bimax2 peptide; arm rep 15.6 32 0.0011 21.8 -0.0 10 441-450 3-12 (28)
6 1g1e_B SIN3A; four-helix bundl 15.3 1.4E+02 0.0048 24.0 3.8 27 166-192 16-44 (89)
7 2cr7_A Paired amphipathic heli 14.4 1.5E+02 0.0051 23.3 3.6 30 166-195 16-47 (80)
8 1v54_D Cytochrome C oxidase su 14.3 59 0.002 29.0 1.3 31 161-191 31-62 (147)
9 2czy_A Paired amphipathic heli 11.9 2.1E+02 0.007 22.3 3.8 30 166-195 10-41 (77)
10 2f05_A Paired amphipathic heli 11.4 1.8E+02 0.0063 24.2 3.5 31 166-196 13-45 (105)
No 1
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12}
Probab=33.07 E-value=1.2 Score=44.20 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=16.7
Q ss_pred CCCchHHHHHHHHHHHHHHHhhc
Q 012974 100 NGGWFGFISEAMEFVLKILKDGI 122 (452)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~l~~~l 122 (452)
++|||.||+.||.++|++||+..
T Consensus 305 DyGW~~fiakPlF~lL~~l~~~~ 327 (330)
T 3blc_A 305 DYGWLWFISQPLLVPRGSLEHHH 327 (330)
T ss_dssp HHHHHHHHTSCCCCCCCC-----
T ss_pred cccCHHHHHHHHHHHHHHhhhhc
Confidence 47999999999999999998754
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=20.07 E-value=45 Score=33.58 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=13.3
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCCCC
Q 012974 324 LSIYWFTNNVLSTAQQVWLRKLGGAKP 350 (452)
Q Consensus 324 L~LYWitSnl~si~Q~~ilrk~~~~~p 350 (452)
.-+||+.--+=.++=.++.+.++.+.+
T Consensus 247 ~WVywvgPiiGailaallY~~l~~p~~ 273 (340)
T 3iyz_A 247 HWIYWVGPIIGAVLAGALYEYVFCPDV 273 (340)
T ss_pred EeehhHHHHHHHHHHHHHHHHHhCCCh
Confidence 447886554444444444444444433
No 3
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=18.91 E-value=1.2e+02 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 012974 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (452)
Q Consensus 166 el~~IqeKyk~d~ek~q--~E~~kLyKk~gvn 195 (452)
=+++|++++.++++..+ .++++-||+..++
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d 44 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLH 44 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHcccc
Confidence 46789999999988765 5889999998876
No 4
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=17.66 E-value=30 Score=21.63 Aligned_cols=7 Identities=86% Similarity=1.146 Sum_probs=3.0
Q ss_pred chhhhcc
Q 012974 444 KRSKRKR 450 (452)
Q Consensus 444 ~~~~~~~ 450 (452)
||-||||
T Consensus 3 krpkrkr 9 (26)
T 4g9j_C 3 KRPKRKR 9 (26)
T ss_pred ccccccc
Confidence 4444443
No 5
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=15.59 E-value=32 Score=21.82 Aligned_cols=10 Identities=60% Similarity=1.006 Sum_probs=3.7
Q ss_pred cccchhhhcc
Q 012974 441 RKSKRSKRKR 450 (452)
Q Consensus 441 ~~~~~~~~~~ 450 (452)
+|.+|.||||
T Consensus 3 rrrrrrkrkr 12 (28)
T 3ukx_C 3 RRRRRRKRKR 12 (28)
T ss_dssp ---CCCCCCC
T ss_pred hhHHHHHhhc
Confidence 3444555554
No 6
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=15.32 E-value=1.4e+02 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=21.0
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHc
Q 012974 166 KIKAIQQRYAGNQERIQ--LETSRLYRQA 192 (452)
Q Consensus 166 el~~IqeKyk~d~ek~q--~E~~kLyKk~ 192 (452)
-+++|+++|.+++++.. .++++-|++.
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~ 44 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKE 44 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhc
Confidence 46789999999988765 4777778765
No 7
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=14.40 E-value=1.5e+02 Score=23.31 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 012974 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (452)
Q Consensus 166 el~~IqeKyk~d~ek~q--~E~~kLyKk~gvn 195 (452)
=++++++++.++++... .++|+-||+..++
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~ 47 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 47 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcCCC
Confidence 36788899998887765 5788888877654
No 8
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=14.27 E-value=59 Score=28.96 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=23.3
Q ss_pred HhccHHHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 012974 161 QNLQPKIKAIQQRYAGNQERI-QLETSRLYRQ 191 (452)
Q Consensus 161 ~~LqPel~~IqeKyk~d~ek~-q~E~~kLyKk 191 (452)
+.|.|++.+|++|-|+|=.++ .+|..+||+-
T Consensus 31 ~~lt~~i~aLreKeKgdWk~LT~eEKkAlYri 62 (147)
T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 62 (147)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHH
Confidence 456899999999999985444 3566777764
No 9
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=11.95 E-value=2.1e+02 Score=22.28 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 012974 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (452)
Q Consensus 166 el~~IqeKyk~d~ek~q--~E~~kLyKk~gvn 195 (452)
=++++++++.++++... .++|+-||+..++
T Consensus 10 yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~ 41 (77)
T 2czy_A 10 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 41 (77)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 46788899998887765 4778888876554
No 10
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=11.39 E-value=1.8e+02 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 012974 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVNP 196 (452)
Q Consensus 166 el~~IqeKyk~d~ek~q--~E~~kLyKk~gvnP 196 (452)
-+++|+++|.++++..+ .++++-||+..++.
T Consensus 13 YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~ 45 (105)
T 2f05_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (105)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhccccc
Confidence 46789999999988765 58899999987764
Done!