Query 012974
Match_columns 452
No_of_seqs 227 out of 1413
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 19:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012974.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012974hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 24.8 71 0.0052 26.5 6.5 37 183-219 34-81 (156)
2 d1v54d_ f.23.1.1 (D:) Mitochon 12.7 29 0.0021 28.8 0.9 32 160-191 27-59 (144)
3 d2f05a1 a.59.1.1 (A:1-85) Sin3 8.4 1.7E+02 0.012 21.1 4.1 31 166-196 13-45 (85)
4 d1s5qb_ a.59.1.1 (B:) Sin3A {M 8.3 1.6E+02 0.012 21.5 3.9 27 166-192 16-44 (89)
5 d1ryka_ a.60.11.1 (A:) Hypothe 8.0 1.7E+02 0.013 20.6 3.8 26 168-193 41-66 (69)
6 d1lvaa3 a.4.5.35 (A:511-574) C 7.7 1.1E+02 0.0081 21.1 2.5 22 176-197 3-24 (64)
7 d2hepa1 a.2.21.1 (A:1-42) Hypo 6.1 2.6E+02 0.019 18.2 3.5 11 182-192 27-37 (42)
8 d2gf5a1 a.77.1.2 (A:89-191) FA 5.9 3.1E+02 0.022 19.7 4.5 37 159-195 30-67 (103)
9 d2e50a1 d.305.1.1 (A:1-222) Pr 5.5 3.1E+02 0.023 23.1 4.9 25 153-177 28-52 (222)
10 d1qopb_ c.79.1.1 (B:) Tryptoph 5.4 2.2E+02 0.016 26.0 4.0 33 163-196 20-55 (390)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=24.83 E-value=71 Score=26.50 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=28.3
Q ss_pred HHHHHHHHH-cCCCCCCCchHH----------HHHHHHHHHHHHHHHH
Q 012974 183 LETSRLYRQ-AGVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (452)
Q Consensus 183 ~E~~kLyKk-~gvnPl~GcLP~----------LiQiPIfigLy~aLr~ 219 (452)
.++.+|||| +|.+|-+|.+|. -++--+|+.+|+.+.+
T Consensus 34 ~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~ 81 (156)
T d2avue1 34 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 81 (156)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHh
Confidence 347799998 899999998763 3566788888877764
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.73 E-value=29 Score=28.80 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=24.7
Q ss_pred HHhccHHHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 012974 160 MQNLQPKIKAIQQRYAGNQERI-QLETSRLYRQ 191 (452)
Q Consensus 160 M~~LqPel~~IqeKyk~d~ek~-q~E~~kLyKk 191 (452)
.+++-|++.+|+||-|+|=.++ .+|..+||+-
T Consensus 27 ~~e~t~ei~aLreKeKgdWk~LS~eEKkalYri 59 (144)
T d1v54d_ 27 VKNLSASQKALKEKEKASWSSLSIDEKVELYRL 59 (144)
T ss_dssp CCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhCChhhcCHHHHHHHHHH
Confidence 3578899999999999985444 3567788864
No 3
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.43 E-value=1.7e+02 Score=21.07 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 012974 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVNP 196 (452)
Q Consensus 166 el~~IqeKyk~d~ek~q--~E~~kLyKk~gvnP 196 (452)
=++++++++.++++..+ .+++.-|++.-++.
T Consensus 13 yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~ 45 (85)
T d2f05a1 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhhccc
Confidence 36788999998888766 47788888876653
No 4
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.33 E-value=1.6e+02 Score=21.53 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHc
Q 012974 166 KIKAIQQRYAGNQERIQ--LETSRLYRQA 192 (452)
Q Consensus 166 el~~IqeKyk~d~ek~q--~E~~kLyKk~ 192 (452)
=++++++++.+++++.. .++|+-|++.
T Consensus 16 yl~kVK~~f~d~p~~Y~~FL~il~~f~~~ 44 (89)
T d1s5qb_ 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKE 44 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 36788999998888765 4677777764
No 5
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=7.96 E-value=1.7e+02 Score=20.56 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=21.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHcC
Q 012974 168 KAIQQRYAGNQERIQLETSRLYRQAG 193 (452)
Q Consensus 168 ~~IqeKyk~d~ek~q~E~~kLyKk~g 193 (452)
-++|++|...++...++..++.++|.
T Consensus 41 Gk~Q~~yG~~kd~a~~~v~~~~~r~~ 66 (69)
T d1ryka_ 41 GKIQERYGYQKDQAEKEVVDWETRNE 66 (69)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 46788998888889999999988875
No 6
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=7.70 E-value=1.1e+02 Score=21.05 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=18.0
Q ss_pred cCHHHHHHHHHHHHHHcCCCCC
Q 012974 176 GNQERIQLETSRLYRQAGVNPL 197 (452)
Q Consensus 176 ~d~ek~q~E~~kLyKk~gvnPl 197 (452)
.|++++.+.+..+|++.|+.|-
T Consensus 3 ~~q~~l~~~I~~~~~~~g~~PP 24 (64)
T d1lvaa3 3 ETQKKLLKDLEDKYRVSRWQPP 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 3567778889999999999985
No 7
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=6.11 E-value=2.6e+02 Score=18.16 Aligned_cols=11 Identities=18% Similarity=0.304 Sum_probs=7.6
Q ss_pred HHHHHHHHHHc
Q 012974 182 QLETSRLYRQA 192 (452)
Q Consensus 182 q~E~~kLyKk~ 192 (452)
.+|+++|.++|
T Consensus 27 ~~EQ~~LR~eY 37 (42)
T d2hepa1 27 KAEQQKLRQEY 37 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35677777776
No 8
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.87 E-value=3.1e+02 Score=19.74 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=24.6
Q ss_pred HHHhccHHHHHHHHHhhcC-HHHHHHHHHHHHHHcCCC
Q 012974 159 AMQNLQPKIKAIQQRYAGN-QERIQLETSRLYRQAGVN 195 (452)
Q Consensus 159 KM~~LqPel~~IqeKyk~d-~ek~q~E~~kLyKk~gvn 195 (452)
++..=..+|+.|+.+|.+| .++..+-+..-++++|-+
T Consensus 30 ~Lgl~~~~I~~I~~~~~~~~~e~~~~mL~~W~~~~g~~ 67 (103)
T d2gf5a1 30 QLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKEN 67 (103)
T ss_dssp HTTCCHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTT
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3333356899999999877 555545555666677655
No 9
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.55 E-value=3.1e+02 Score=23.11 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHhhcC
Q 012974 153 QVESTLAMQNLQPKIKAIQQRYAGN 177 (452)
Q Consensus 153 q~ks~~KM~~LqPel~~IqeKyk~d 177 (452)
+.+....++.+|-++.++.+++...
T Consensus 28 ~~~~i~~L~~iQ~e~~~l~~e~~~e 52 (222)
T d2e50a1 28 QQEAIEHIDEVQNEIDRLNEQASEE 52 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777888888887766543
No 10
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=5.41 E-value=2.2e+02 Score=25.97 Aligned_cols=33 Identities=15% Similarity=0.390 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHh---hcCHHHHHHHHHHHHHHcCCCC
Q 012974 163 LQPKIKAIQQRY---AGNQERIQLETSRLYRQAGVNP 196 (452)
Q Consensus 163 LqPel~~IqeKy---k~d~ek~q~E~~kLyKk~gvnP 196 (452)
|.|-|++|.+-| +.|+ +.++|..++||.|--.|
T Consensus 20 l~~~~~~l~~~~~~~~~~~-~f~~e~~~~~~~~~grp 55 (390)
T d1qopb_ 20 LMPALNQLEEAFVSAQKDP-EFQAQFADLLKNYAGRP 55 (390)
T ss_dssp GHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHhcCCCC
Confidence 456666666655 4465 56678999999996665
Done!