Query 012976
Match_columns 452
No_of_seqs 465 out of 1731
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 19:52:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 1.4E-28 4.9E-33 237.1 28.2 344 27-439 22-383 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.7E-29 1.3E-33 242.1 14.7 345 34-446 31-388 (451)
3 4aps_A DI-OR tripeptide H+ sym 99.9 3E-25 1E-29 217.1 23.4 356 31-440 13-424 (491)
4 2gfp_A EMRD, multidrug resista 99.9 9.7E-26 3.3E-30 212.7 17.9 326 35-446 4-332 (375)
5 4gc0_A D-xylose-proton symport 99.9 3.5E-23 1.2E-27 202.4 18.4 354 49-442 30-410 (491)
6 2cfq_A Lactose permease; trans 99.9 2.4E-23 8.4E-28 199.0 9.5 340 29-439 5-349 (417)
7 2xut_A Proton/peptide symporte 99.8 1.2E-20 4.1E-25 186.0 14.1 172 33-241 14-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 5.1E-13 1.7E-17 128.7 9.0 179 30-242 251-433 (451)
9 4gc0_A D-xylose-proton symport 99.4 7.8E-13 2.7E-17 128.9 8.2 181 46-253 292-473 (491)
10 2cfq_A Lactose permease; trans 99.2 3.1E-11 1.1E-15 114.9 10.5 182 32-250 221-407 (417)
11 3o7q_A L-fucose-proton symport 99.2 2E-11 6.8E-16 117.0 7.1 143 32-199 259-403 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.1 1.5E-10 5.2E-15 112.7 9.1 175 45-247 297-476 (491)
13 2gfp_A EMRD, multidrug resista 98.7 1.5E-09 5.2E-14 101.6 0.5 150 30-199 198-348 (375)
14 2xut_A Proton/peptide symporte 98.6 1.2E-07 4E-12 93.0 9.8 136 55-199 323-463 (524)
15 2g9p_A Antimicrobial peptide l 44.1 14 0.00049 17.7 1.6 14 351-364 2-15 (26)
16 2dw3_A Intrinsic membrane prot 31.0 1E+02 0.0036 20.2 4.7 33 220-252 31-63 (77)
17 2nrg_A Intrinsic membrane prot 22.1 1.2E+02 0.0042 20.1 3.8 33 220-252 32-64 (82)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=1.4e-28 Score=237.14 Aligned_cols=344 Identities=12% Similarity=0.064 Sum_probs=242.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHH
Q 012976 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC 106 (452)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~ 106 (452)
+..++.++......+...+......+.+|.+.+++|.++.+.+++.+++.++..++.++.|+++| |+|||+.++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~~ 97 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIITG 97 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH----HSCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchHHHHHH
Confidence 34455556666666666777778888899988999999999999999999999999999999999 99999988875
Q ss_pred HHHHHHHHHHHH---hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHH
Q 012976 107 GAISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (452)
Q Consensus 107 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (452)
..+ ..++..+. ...++ ++.+++.+++.|++.+...+...++++|++|+++|+ +++++.+
T Consensus 98 ~~~-~~~~~~~~~~~~~~~~---------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~ 159 (438)
T 3o7q_A 98 LFL-YALGAALFWPAAEIMN---------------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQ 159 (438)
T ss_dssp HHH-HHHHHHHHHHHHHTTC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH--HHHHHHH
T ss_pred HHH-HHHHHHHHHhcccccc---------------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH--HHHHHHH
Confidence 444 44444444 44444 377888999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhhccccc-cceeccccc------------cccccccccchhHHHHHHHHHHHHHHHHHHhc-cccCCCC
Q 012976 184 LFMAVGNILGYATGSFSG-WFKILPFTL------------TSACNVDCANLKSAFFLDVIFIAITTCISASA-AHEVPLG 249 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~-~~~~~p~~~------------~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~ 249 (452)
....+|..+++.+++.+. ... +... .........+||+.|++.+++.++..++.++. .||++++
T Consensus 160 ~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 237 (438)
T 3o7q_A 160 TFNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD 237 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 999999999999988732 110 0000 00000000028999987776665555444332 3333221
Q ss_pred CCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHH-HHhHhhCCCCCcccccc
Q 012976 250 SHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW-MGREIYGGEPNEGQNYA 328 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 328 (452)
++++ ++ +++..++.++.+|+ |.++...+..++..........|.+.| +. +.++.++
T Consensus 238 ~~~~-------~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~------- 294 (438)
T 3o7q_A 238 NHSD-------AK------QGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVE-EIPGMTA------- 294 (438)
T ss_dssp CCCC-------SS------TTSHHHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSTTCCH-------
T ss_pred cccc-------cc------ccchhhhHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCcch-------
Confidence 1111 00 11112345667777 788888888888777777888888888 53 3333221
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHH
Q 012976 329 TGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALII 408 (452)
Q Consensus 329 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (452)
...........++..++.++.+++.||+|||+.+..+.++.+++++++.+.+ +.+ ....
T Consensus 295 ---~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~ 353 (438)
T 3o7q_A 295 ---GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----------------GHV-GLIA 353 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-----------------HHH-HHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-----------------CcH-HHHH
Confidence 1222334446777888999999999999999999888888877776665542 233 3444
Q ss_pred HHHHhHHhHhHhhccchhhhhhcccccCccc
Q 012976 409 FTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (452)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g 439 (452)
..+.|++.+...+..+++..|..|++ ++++
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 383 (438)
T 3o7q_A 354 LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYG 383 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-ccch
Confidence 57778888888888889988888866 4443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=3.7e-29 Score=242.11 Aligned_cols=345 Identities=12% Similarity=0.054 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHH
Q 012976 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~ 113 (452)
+......+...+......+.+|.+.+++ .++.+.+++.+++.++..++++++|+++| |+|||+.+++ +.+...+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~ 104 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH----hcCchHHHHH-HHHHHHH
Confidence 3344444555555566677888888888 99999999999999999999999999999 9999997777 4455555
Q ss_pred HHHHHhc----ccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 114 AVLLIGL----SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 114 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
+.++..+ .++. +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+....+|
T Consensus 105 ~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g 167 (451)
T 1pw4_A 105 VMLFMGFVPWATSSI---------------AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVG 167 (451)
T ss_dssp HHHHHHHCHHHHSSS---------------SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccH---------------HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhh--HHHHHHHHHHHHH
Confidence 5556655 5444 56778899999999999999999999999999999 9999999999999
Q ss_pred HHHHHhhccccccceeccccccccccccccc-hhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccc---ccCc
Q 012976 190 NILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG---HEQS 265 (452)
Q Consensus 190 ~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~ 265 (452)
.++++.+++.+... .+ ||+.|++.+++.++..++.++..||++++...+++++.+++ +.++
T Consensus 168 ~~~g~~~~~~l~~~---------------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (451)
T 1pw4_A 168 GGIPPLLFLLGMAW---------------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNE 232 (451)
T ss_dssp HTSHHHHHHHHHHH---------------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------
T ss_pred HHHHHHHHHHHHHH---------------hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchh
Confidence 99999998762211 16 99999998888877777777778887654332211111110 0000
Q ss_pred cchHHHHHHH--HHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHH
Q 012976 266 SDVHEAFLWE--LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (452)
Q Consensus 266 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 343 (452)
+++++...++ .++.+++ +.++...+..++..........+.+.|+.+ .++.+ ............+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~----------~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 233 KAEQELTAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFA----------LDKSSWAYFLYEY 299 (451)
T ss_dssp ------CCTHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCC----------HHHHHHHHHHHHH
T ss_pred hhhcccccccchHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC----------HHHHHHHHHHHHH
Confidence 0000111111 2445666 888888888888888888888888887742 12211 1122333444677
Q ss_pred HHHHHHHHHHHHHHhh--CCchhHHHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHh
Q 012976 344 VLGITSVLMEKLCRKW--GAGFIWGISNILMA-LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (452)
Q Consensus 344 ~~~i~~~~~g~l~dr~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (452)
+.+++.++.+++.||+ |+|+.+..+..+.. ++++++.+.. . .+.+.......+.|++.+...
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~g~~~~~~~ 364 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP--------------A-GNPTVDMICMIVIGFLIYGPV 364 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC--------------T-TCHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc--------------c-cCHHHHHHHHHHHHHHHhchH
Confidence 8888999999999999 99988877766655 4444433321 1 134556666777888888888
Q ss_pred hccchhhhhhcccccCcccceeeeee
Q 012976 421 SVPYALVSIRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 421 ~~~~~~~~~~~~~~~~g~g~~~g~~n 446 (452)
+..++++.|..|++.+| .+.|+.+
T Consensus 365 ~~~~~~~~~~~~~~~~g--~~~~~~~ 388 (451)
T 1pw4_A 365 MLIGLHALELAPKKAAG--TAAGFTG 388 (451)
T ss_dssp HHHHHHHHHTSCTTHHH--HHHHHHH
T ss_pred HHHHHHHHHHhchhhhh--hHHHHHH
Confidence 88889999999998764 4444443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.94 E-value=3e-25 Score=217.12 Aligned_cols=356 Identities=13% Similarity=0.020 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----hCCCchhhHHHHhhhhhhhhhcccccccccccccCC-CCCcchh
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QE-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPF 103 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r-~Grr~~~ 103 (452)
+..+......+...+.++....+++.|+ ++ +|.++.+.+++.+++.++..+++++.|+++| | +|||+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~g~r~~~ 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD----RIIGARPAV 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchHHH
Confidence 3455566666777777788888888888 44 8999999999999999999999999999999 9 8999988
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHH
Q 012976 104 IVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (452)
Q Consensus 104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (452)
+. +.+...++..+..++++. +.+++.+.+.|++.+...+...++++|++|+++|+.+.+.+..+
T Consensus 89 ~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 152 (491)
T 4aps_A 89 FW-GGVLIMLGHIVLALPFGA---------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFV 152 (491)
T ss_dssp HH-HHHHHHHHHHHHHSCCST---------------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHH
Confidence 77 445555556666666554 56778888999999999999999999999998833117888888
Q ss_pred HHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc
Q 012976 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (452)
...++|..+++.+++.+... .+|++.|++.++..++..++..+..++..+++.++.+.+.++++.
T Consensus 153 ~~~~~g~~~~~~~~~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4aps_A 153 FGINLGAFIAPLIVGAAQEA---------------AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEV 217 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh---------------hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchh
Confidence 99999999999998873221 289999998876666555554444343322211111110000000
Q ss_pred Ccc-c------------------------hH-HH----------------HHHHHHH--HHhcchHHHHHHHHHHHHHHH
Q 012976 264 QSS-D------------------------VH-EA----------------FLWELFG--TFRYFSGTIWIILIVTALTWL 299 (452)
Q Consensus 264 ~~~-~------------------------~~-~~----------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 299 (452)
++. + ++ .. ..++... ..++.....+.+....++.+.
T Consensus 218 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (491)
T 4aps_A 218 KPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWA 297 (491)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00 00 0000000 001100123333444444444
Q ss_pred hhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHH-----HHHHHHHH
Q 012976 300 GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG-----ISNILMAL 374 (452)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~-----~~~~~~~~ 374 (452)
.+.....+.+.|.. +.++.+.... ........+...++.++.+++.||+|||+... .+..+.++
T Consensus 298 ~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 298 IEEQGSVVLATFAA-ERVDSSWFPV----------SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHGGGGTHHHHHHH-HSCCCSSSCS----------GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHH-HHhccCccCH----------HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 44444455555653 3233221111 11122345666677889999999999986544 67777777
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccc
Q 012976 375 CFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGG 440 (452)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~ 440 (452)
++.++........+ +...+.+.......+.|++.+...+..++++.|..|++.|+++.
T Consensus 367 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 424 (491)
T 4aps_A 367 SFLLMAIPGALYGT--------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMM 424 (491)
T ss_dssp HHTTTHHHHHHCCC--------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSST
T ss_pred HHHHHHHHHHhcCC--------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 76666554321110 00113445566677888888888888899999999999875533
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=9.7e-26 Score=212.73 Aligned_cols=326 Identities=13% Similarity=0.046 Sum_probs=227.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHH
Q 012976 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (452)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~ 114 (452)
.+....+...+......+.+|.+.+++|.++.+.+++.++..++..+++++.|+++| |+||||.++.+. ....++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~~-~~~~~~ 78 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD----RVGRRPVILVGM-SIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT----TSCCCCCCHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHHHH-HHHHHH
Confidence 344555566667777888889889999999999999999999999999999999999 999999988744 444555
Q ss_pred HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHH
Q 012976 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (452)
.....+.++ .+.+++.+.+.|++.+...+...+++.|++|+++|+ ++++..+....+|..+++
T Consensus 79 ~~~~~~~~~---------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~ 141 (375)
T 2gfp_A 79 TLVAVTTSS---------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR--HANSLLNMGILVSPLLAP 141 (375)
T ss_dssp HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc---------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHhhH
Confidence 555555444 367778899999999999999999999999999999 999999999999999999
Q ss_pred hhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHH
Q 012976 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (452)
Q Consensus 195 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (452)
.+++.+.... +|++.|++.+++.++..+...+..||++++++++++ . + +
T Consensus 142 ~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------~----~ 190 (375)
T 2gfp_A 142 LIGGLLDTMW---------------NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTR------L------L----T 190 (375)
T ss_dssp HHHHHSSCHH---------------HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCC------T------T----T
T ss_pred HHHHHHHHhc---------------cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccccc------H------H----H
Confidence 9988733221 899999988877766666566667776544322100 0 0 0
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 012976 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~ 354 (452)
+.++.+|+ |+++...+..++.......+..+.+.|+.+.. + + +............++..++.++.++
T Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g--------~--~~~~~g~~~~~~~~~~~~~~~~~~~ 257 (375)
T 2gfp_A 191 SYKTLFGN--SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL-G--------L--SSMTVSILFILPIPAAFFGAWFAGR 257 (375)
T ss_dssp CSTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH-H--------H--HHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------C--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334556 77888877777777777777777777664321 1 1 1111222333456777778888888
Q ss_pred HHHhhCCchhHHHHHHH-HHHHHH--HHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhc
Q 012976 355 LCRKWGAGFIWGISNIL-MALCFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (452)
Q Consensus 355 l~dr~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (452)
+.||.+++ +..+... ...+.. ...... ++ +.+...+...+.|++.+...+...+++.|..
T Consensus 258 l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 320 (375)
T 2gfp_A 258 PNKRFSTL--MWQSVICCLLAGLLMWIPDWFG---VM------------NVWTLLVPAALFFFGAGMLFPLATSGAMEPF 320 (375)
T ss_dssp TTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH---HH------------HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc---cc------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 88888762 2233322 222222 122211 00 3445556677888888888899999999999
Q ss_pred ccccCcccceeeeee
Q 012976 432 ESLGLGQGGHFYGLY 446 (452)
Q Consensus 432 ~~~~~g~g~~~g~~n 446 (452)
| +++ |.+.|+.|
T Consensus 321 p-~~~--g~~~g~~~ 332 (375)
T 2gfp_A 321 P-FLA--GTAGALVG 332 (375)
T ss_dssp H-HHH--HHHHHHHH
T ss_pred C-ccc--chHHHHHH
Confidence 8 554 44555444
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.90 E-value=3.5e-23 Score=202.44 Aligned_cols=354 Identities=13% Similarity=0.072 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHhCC--------CchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhc
Q 012976 49 LQLSLLTPYVQELGI--------PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (452)
Q Consensus 49 ~~~~~~~~~~~~~g~--------s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~ 120 (452)
.....++.+.++++. +..+.|++.+.+.++.+++++++|+++| |+|||+.+++...+..+. .+...+
T Consensus 30 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laD----r~GRk~~l~~~~~l~~i~-~i~~a~ 104 (491)
T 4gc0_A 30 VISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKIAAVLFFIS-GVGSAW 104 (491)
T ss_dssp GGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHH-HHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHH-HHHHHH
Confidence 334455555555532 2346788999999999999999999999 999999988855544444 444443
Q ss_pred ccccccccCC---CCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc
Q 012976 121 SADIGWLLGD---RGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 121 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
.+........ ........++.++++|++.|++.+...+...++++|+.|+++|+ +..+..+.+..+|.++++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg--~~~~~~~~~~~~g~~~~~~~~ 182 (491)
T 4gc0_A 105 PELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRG--KLVSFNQFAIIFGQLLVYCVN 182 (491)
T ss_dssp TTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhh--hhHHhhhhhhhhhhhhhhhcc
Confidence 2211000000 00012345678899999999999999999999999999999999 999999999999998888776
Q ss_pred cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccC----------ccc
Q 012976 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ----------SSD 267 (452)
Q Consensus 198 ~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----------~~~ 267 (452)
....... .. ......+|+..+....+. .+..++..++.||+|+....+.+.++..+..+ +..
T Consensus 183 ~~~~~~~------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~ 254 (491)
T 4gc0_A 183 YFIARSG------DA-SWLNTDGWRYMFASECIP-ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ 254 (491)
T ss_dssp HHHHTTS------CT-TTTTTTHHHHHHHTTHHH-HHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccc------cc-ccccchhhHHHhhhhhhh-hhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHH
Confidence 5411100 00 000112566655554443 34445566778998764332222111100000 000
Q ss_pred hHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHH
Q 012976 268 VHEAFLWEL-----FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNS 342 (452)
Q Consensus 268 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 342 (452)
..+....+. +....+.++.........+....+...+..|.+.... .. +.+ ...........+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~----------~~~~~~~~~~~~ 322 (491)
T 4gc0_A 255 EIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TL-GAS----------TDIALLQTIIVG 322 (491)
T ss_dssp HHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS-SCC----------HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hc-CCC----------ccchhhHHHHHH
Confidence 000000000 0111111222222233333333344444445544432 11 100 011122233456
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHh-Hhh
Q 012976 343 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI-TYS 421 (452)
Q Consensus 343 ~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 421 (452)
+...++.++.+++.||+|||+.+..+....+++++.+........ ..+..++...+...+++. ..+
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------------PGIVALLSMLFYVAAFAMSWGP 389 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc-------------chHHHHHHHHHHHHHHHhHHHH
Confidence 777788899999999999999999998888888776655531111 122222222222222222 345
Q ss_pred ccchhhhhhcccccCccccee
Q 012976 422 VPYALVSIRTESLGLGQGGHF 442 (452)
Q Consensus 422 ~~~~~~~~~~~~~~~g~g~~~ 442 (452)
+.+.+.+|.+|.+.|++|.++
T Consensus 390 ~~~~~~~E~fPt~~R~~~~g~ 410 (491)
T 4gc0_A 390 VCWVLLSEIFPNAIRGKALAI 410 (491)
T ss_dssp HHHHHHHHSSCTTTHHHHHHH
T ss_pred HHHHHHHHhCCHhHHHHHHHH
Confidence 678899999999988765543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.88 E-value=2.4e-23 Score=199.01 Aligned_cols=340 Identities=11% Similarity=0.072 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
+.++.+......+.....+....+++|.+++ ++|.++.+.|++.++..++..++++++|+++| |+||||++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD----r~Grr~~l~~~~ 80 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWII 80 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT----TSTTCCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH
Confidence 3455565555555555666777789999885 58999999999999999999999999999999 999999887744
Q ss_pred HHHHHHH--HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc--cccchhhhhhHHH
Q 012976 108 AISIAVA--VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK--DHRRTRVANAYFS 183 (452)
Q Consensus 108 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~ 183 (452)
.+..+.. .....+.+.. ......++.+.+++.+...+.......++.++ ++++ ...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~ 144 (417)
T 2cfq_A 81 TGMLVMFAPFFIFIFGPLL--------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN--FEFGRAR 144 (417)
T ss_dssp HHTTSCHHHHHHHTHHHHH--------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT--CCHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc--cchHHHH
Confidence 4332211 1111111000 00011122222233333333333334444433 3345 5666666
Q ss_pred HHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc
Q 012976 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (452)
....+|..+++.+++++.. .+|++.|++.++..++..+...+..||+++.. ++++++ +++
T Consensus 145 ~~~~~g~~~~~~l~~~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~- 204 (417)
T 2cfq_A 145 MFGCVGWALGASIVGIMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSA-TVANAV--GAN- 204 (417)
T ss_dssp SSTTTHHHHHHHHHHHHHH----------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS-CSSSSS--SSC-
T ss_pred HHHHHHHHHHHHHHHHHHH----------------hchhHHHHHHHHHHHHHHHHHHHcCccccccc-cccccc--ccc-
Confidence 6778888888887766211 16888887765554333333222233332111 110000 000
Q ss_pred CccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHH
Q 012976 264 QSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (452)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 343 (452)
+++ ...++.++.+++ |+++...+..++....+..+..+.+.|+. +.++.. ..+.........+..+
T Consensus 205 ~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~g~~~~~~~~ 270 (417)
T 2cfq_A 205 HSA----FSLKLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFATG-------EQGTRVFGYVTTMGEL 270 (417)
T ss_dssp CCC----CCHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSSH-------HHHTHHHHHHHHHHHH
T ss_pred ccc----ccHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-------CCChhHHHHHHHHHHH
Confidence 000 112344566777 77776665545444444444444566653 222100 0011111122333456
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhcc
Q 012976 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (452)
Q Consensus 344 ~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (452)
..+++.++.+++.||+|||+++..+..+.+++++.+.+.+ +.+..++...+.+++.+...+..
T Consensus 271 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~ 333 (417)
T 2cfq_A 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-----------------SALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC-----------------SHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999988888877776655443321 23344444455566665555556
Q ss_pred chhhhhhcccccCccc
Q 012976 424 YALVSIRTESLGLGQG 439 (452)
Q Consensus 424 ~~~~~~~~~~~~~g~g 439 (452)
+.+++|..|++.||++
T Consensus 334 ~~~~~~~~p~~~~g~~ 349 (417)
T 2cfq_A 334 FKYITSQFEVRFSATI 349 (417)
T ss_dssp HHHHHHHSCHHHHHHH
T ss_pred HHHHHHHCCHHHHHHH
Confidence 7899999999887553
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.84 E-value=1.2e-20 Score=186.03 Aligned_cols=172 Identities=14% Similarity=0.198 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC------CCchhhHHHHhhhhhhhhhcccccccccccccCCC-CCcchhH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELG------IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFI 104 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~-Grr~~~i 104 (452)
.+.+....+...+.++...++++.|+ +++| .++.+.+++.+++.++..++.++.|+++| |+ |||+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~~g~r~~~~ 89 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD----RFFGKYNTIL 89 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT----TSSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcchHHHH
Confidence 34455555666677777778888887 6689 99999999999999999999999999999 99 9999887
Q ss_pred HHHHHHHHHHHHHHhccc-ccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhH--
Q 012976 105 VCGAISIAVAVLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-- 181 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-- 181 (452)
+ +.+...++.++..+.+ + .+.+++.+.+.|++.+...+...+++.|++|+++|+ ++.+.
T Consensus 90 ~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~ 151 (524)
T 2xut_A 90 W-LSLIYCVGHAFLAIFEHS---------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS--LAQKAFD 151 (524)
T ss_dssp H-HHHHHHHHHHHHHHTSSC---------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT--HHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhccc---------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH--HHHHHHH
Confidence 7 4444555555555554 3 366778888999999999999999999999999997 66555
Q ss_pred -HHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 182 -FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 182 -~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
.....++|..+++.+++.+... .+|++.|++.+++.++..++..+
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 152 MFYFTINFGSFFASLSMPLLLKN---------------FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHTSTHHHHT---------------SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888763211 28999999887776555444433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.39 E-value=5.1e-13 Score=128.68 Aligned_cols=179 Identities=14% Similarity=0.064 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCC--CCcchhHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIVC 106 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~--Grr~~~i~~ 106 (452)
.+.++...+..+...........+.|.++++ +|.++.+.+++.+...++..++.++.|+++| |+ |||+.++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----~~~~~~~~~~~~~ 326 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFRGNRGATGVF 326 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCchhHHHH
Confidence 3556666666666667777788899999866 8999999999999999999999999999999 98 898877775
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHH
Q 012976 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (452)
..+...++..+..+.++ ...+...+...+.+++.+...+...+++.|.+|+++|+ ++.++.+...
T Consensus 327 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~ 391 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNPA-------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFG 391 (451)
T ss_dssp HHHHHHHHHHHTTSCCT-------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh--hHHHHHHHHH
Confidence 55544355555544321 11344555566677777777778889999999999999 9999999999
Q ss_pred HH-HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhc
Q 012976 187 AV-GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242 (452)
Q Consensus 187 ~~-g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (452)
.+ |..+++.+.+.+... .+++..|++.+++.++..++.++.
T Consensus 392 ~~~g~~~~~~~~g~l~~~---------------~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDF---------------FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHS---------------SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---------------cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999888773221 178888888877766665555443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.36 E-value=7.8e-13 Score=128.94 Aligned_cols=181 Identities=16% Similarity=0.080 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 012976 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (452)
+......+.+.+.+..+.+............+...++.++.+++.| |+|||+.++..... ..++..........
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~Grr~~~~~~~~~-~~~~~~~l~~~~~~- 365 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRKPLQIIGALG-MAIGMFSLGTAFYT- 365 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCSHHHHHHHHHH-HHHHHHHHHHHHHT-
T ss_pred hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH----hhcCcchhccchHH-HHHHHHHHHHHHhc-
Confidence 4555666777777888988888877777888888999999999999 99999987774443 33333333222111
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhhh-cchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccce
Q 012976 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNM-TQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (452)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (452)
.... +..++...+...+.+. ..+..+.+.+|.+|.+.|+ .+.|+......+++.+++.+.+...
T Consensus 366 --------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~--~~~g~~~~~~~~~~~i~~~~~p~l~--- 430 (491)
T 4gc0_A 366 --------QAPG--IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWLANYFVSWTFPMMD--- 430 (491)
T ss_dssp --------TCCH--HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH--HHHHHHHHHHHHHHHHHHTHHHHHC---
T ss_pred --------ccch--HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1111 1112222222222222 3355678999999999999 8999999999999988877654411
Q ss_pred eccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 012976 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253 (452)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 253 (452)
.........++...|++.++++++..++.++++||++.++.+|
T Consensus 431 ------~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 431 ------KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred ------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 1100000014556788888888888888889999998776543
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.22 E-value=3.1e-11 Score=114.94 Aligned_cols=182 Identities=9% Similarity=0.014 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC---CCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQE-LG---IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g---~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
+.+......+.....+.....+.|.|.++ ++ .+....++..++..+...++.++.|+++| |+|||+.++. +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~l~~-~ 295 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIGGKNALLL-A 295 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHH-H
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHH-H
Confidence 33333333333333444444456767644 33 22345677777777888888999999999 9999987766 4
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhH-HHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFM 186 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~ 186 (452)
.....+......+.++. +.+++...+.+++.+...+....+++|.+|++.|+ .+.+. .+...
T Consensus 296 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~ 358 (417)
T 2cfq_A 296 GTIMSVRIIGSSFATSA---------------LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFK 358 (417)
T ss_dssp HHHHHHHHHHHTTCCSH---------------HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHH
Confidence 44444444444333221 33334444455555555566788999999999999 77887 47778
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS 250 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 250 (452)
.+|..++|.+++.+... .+++..|.+.+++.++..++.++..||+++.+
T Consensus 359 ~lg~~~gp~l~G~l~~~---------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYES---------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHTHHHHTHHHH---------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred hHHHHHhhhhHHHHHHh---------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 89999999888763221 16777888887777776666666666655443
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.18 E-value=2e-11 Score=117.01 Aligned_cols=143 Identities=11% Similarity=0.062 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-CCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPY-VQEL-GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
+.+......+...........+.|.| +++. |.++.+.+++.++..++..++.++.|+++| |+|||+.++... +
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~~~-~ 333 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS----RFAPHKVLAAYA-L 333 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH-H
Confidence 34444445455555666777888999 7665 999999999999999999999999999999 999998877744 4
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
...++..+..+.++. + ..+...+.+++.+...+...++..|.+|++ ++ .+.++.. ...+|
T Consensus 334 ~~~~~~~~~~~~~~~---------------~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~-~~~~g 393 (438)
T 3o7q_A 334 IAMALCLISAFAGGH---------------V-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHHHHHHHCCHH---------------H-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH--HHHHHHH-HTTHH
T ss_pred HHHHHHHHHHHcCCc---------------H-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc--chhhHHH-HHHHH
Confidence 445555555444332 1 223345667778888888899999999866 77 6777666 56688
Q ss_pred HHHHHhhccc
Q 012976 190 NILGYATGSF 199 (452)
Q Consensus 190 ~~ig~~~~~~ 199 (452)
..+++.+.+.
T Consensus 394 ~~~~~~~~g~ 403 (438)
T 3o7q_A 394 GGIVTPVMGF 403 (438)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888776
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.10 E-value=1.5e-10 Score=112.65 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhH----HHHHHHHHHHHHHHh
Q 012976 45 FGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI----VCGAISIAVAVLLIG 119 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i----~~~~~~~~~~~~~~~ 119 (452)
..+.....+++.+.++ .+.+..+.+++.+...+...++.++.|+++| |+|||+... ..+.....++..+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWT----AWKKNQPSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHH----HTTTC---CHHHHHHHHHHHHHHHTTTH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHH----HHhccCCCchHHHHHHHHHHHHHHHHHH
Confidence 3444445566777754 6777677888888888889999999999999 999886543 123344444433333
Q ss_pred cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
...... + .......+...+...+.+++.+...+...+++.|..|+++|+ ++.|+.+....+|..+++.+.+.
T Consensus 373 ~~~~~~----~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 373 IPGALY----G--TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS--QMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp HHHHHC----C--CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS--SSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhc----C--CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 221000 0 001112244556667778888888888999999999999999 99999999999999999988776
Q ss_pred cccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 200 ~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
... .++...|...+++.++..++.++..++.+
T Consensus 445 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 445 YNA----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp GGG----------------SSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred Hhc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 15566777777777666666666655544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.72 E-value=1.5e-09 Score=101.58 Aligned_cols=150 Identities=11% Similarity=-0.042 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
.++.+......+...........+.|.+.++ +|.++.+.+++.+...++..++.++.|+++| |+|+| ......
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----r~~~~--~~~~~~ 271 (375)
T 2gfp_A 198 NSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNK----RFSTL--MWQSVI 271 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTT----HHHHH--HHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHH
Confidence 3445555555555566666777788888754 8999999999999999999999999999999 87762 222111
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
.....+..+...... .....+...+...+.+++.+...+...++..|..| ++|+ ++.++.+....+
T Consensus 272 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g--~~~g~~~~~~~~ 337 (375)
T 2gfp_A 272 CCLLAGLLMWIPDWF-----------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAG--TAGALVGGLQNI 337 (375)
T ss_dssp HHHHTSSSSSHHHHH-----------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh-----------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccc--hHHHHHHHHHHH
Confidence 111111111111000 00123445566677788888888999999999998 8899 999999999999
Q ss_pred HHHHHHhhccc
Q 012976 189 GNILGYATGSF 199 (452)
Q Consensus 189 g~~ig~~~~~~ 199 (452)
|..+++.+.+.
T Consensus 338 g~~~~~~~~g~ 348 (375)
T 2gfp_A 338 GSGVLASLSAM 348 (375)
T ss_dssp HHHCCSTTCTH
T ss_pred HHHHHHHHHHH
Confidence 99888877665
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.60 E-value=1.2e-07 Score=92.99 Aligned_cols=136 Identities=11% Similarity=0.134 Sum_probs=82.4
Q ss_pred HHHHHHhCCCc-hhhHHHHhhhhhhhhhccccccccc-ccccCCCCCcc---hhHHHHHHHHHHHHHHHhcccccccccC
Q 012976 55 TPYVQELGIPH-AWASIIWLCGPVSGLFVQPLVGHFS-DRCTSRFGRRR---PFIVCGAISIAVAVLLIGLSADIGWLLG 129 (452)
Q Consensus 55 ~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~-Dr~~~r~Grr~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (452)
+.+..+.+.+. ...+.+.....+...+..++.+++. |+.+ |.|+|. ..+..+.+...++..+........
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 397 (524)
T 2xut_A 323 ILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIE-RMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM---- 397 (524)
T ss_dssp HHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----
T ss_pred HHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 33334444332 2466777777777777888888775 2110 433321 123334444555554443322100
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
+ .......+.+++...+.+++.+...+...+++.|..|+++|+ +++|+.+....+|..+++.+.+.
T Consensus 398 ~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~ 463 (524)
T 2xut_A 398 D--GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG--TIMSFWTLSVTVGNLWVLLANVS 463 (524)
T ss_dssp T--TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCT--TTHHHHGGGHHHHHHHHHHHHHH
T ss_pred c--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000112244555677778888888888999999999999999 99999999999999999999877
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=44.14 E-value=14 Score=17.66 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=10.9
Q ss_pred HHHHHHHhhCCchh
Q 012976 351 LMEKLCRKWGAGFI 364 (452)
Q Consensus 351 ~~g~l~dr~g~~~~ 364 (452)
+.|.+.+|+||+.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 45788999999754
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=31.04 E-value=1e+02 Score=20.24 Aligned_cols=33 Identities=3% Similarity=-0.043 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 012976 220 NLKSAFFLDVIFIAITTCISASAAHEVPLGSHD 252 (452)
Q Consensus 220 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~ 252 (452)
+|..++.+...+.++..-..=..+||+.++.+.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP~ 63 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPA 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCCC
Confidence 444455554444444443444567876655443
No 17
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=22.10 E-value=1.2e+02 Score=20.09 Aligned_cols=33 Identities=3% Similarity=-0.043 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 012976 220 NLKSAFFLDVIFIAITTCISASAAHEVPLGSHD 252 (452)
Q Consensus 220 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~ 252 (452)
+|..++.+...+.++..-..=..+||+.++.+.
T Consensus 32 G~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP~ 64 (82)
T 2nrg_A 32 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPA 64 (82)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCCC
Confidence 555555555444444444444567877655443
Done!