BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012977
         (452 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4E2Q|A Chain A, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|B Chain B, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|C Chain C, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|D Chain D, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|E Chain E, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|F Chain F, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|G Chain G, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|H Chain H, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|I Chain I, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|J Chain J, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|K Chain K, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|L Chain L, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|M Chain M, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|N Chain N, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|O Chain O, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2Q|P Chain P, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana
 pdb|4E2S|A Chain A, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|B Chain B, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|C Chain C, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|D Chain D, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|E Chain E, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|F Chain F, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|G Chain G, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|H Chain H, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|I Chain I, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|J Chain J, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|K Chain K, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|L Chain L, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|M Chain M, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|N Chain N, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|O Chain O, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
 pdb|4E2S|P Chain P, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
           Arabidopsis Thaliana In Complex With Its Substrate,
           (S)-Ureidoglycine
          Length = 266

 Score = 28.9 bits (63), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 139 SIAKQDFDPEQVLKTKVTHVHQHAFIKEHFLG--------YGKDSALLGWMLSFFKQFYA 190
           +I   DF P + L  K  H +QH  +     G        Y   +  + WM  F  Q+YA
Sbjct: 187 NIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYA 246

Query: 191 SITKA 195
           ++ K 
Sbjct: 247 ALGKT 251


>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
           Protease Active Site Selectivity
 pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
           Protease Active Site Selectivity
          Length = 224

 Score = 28.9 bits (63), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 381 GSSFKKAIFEENVQVGIVGWAEKVRRK 407
           G  F+K   +E VQVGIV W E   RK
Sbjct: 175 GPMFRKDNADEWVQVGIVSWGEGCARK 201


>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
          Length = 229

 Score = 28.5 bits (62), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 381 GSSFKKAIFEENVQVGIVGWAEKVRRK 407
           G  F+K   +E VQVGIV W E   RK
Sbjct: 180 GPMFRKDNADEWVQVGIVSWGEGCARK 206


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,260,660
Number of Sequences: 62578
Number of extensions: 459184
Number of successful extensions: 1059
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1056
Number of HSP's gapped (non-prelim): 3
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)