Query 012977
Match_columns 452
No_of_seqs 150 out of 243
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 3E-165 6E-170 1279.7 31.5 389 2-414 55-445 (478)
2 TIGR03777 RPE4 Rickettsial pal 41.2 12 0.00026 26.8 0.6 10 295-304 23-32 (32)
3 PF15468 DUF4636: Domain of un 37.8 19 0.0004 36.0 1.6 38 218-260 25-62 (243)
4 PF09878 DUF2105: Predicted me 36.1 55 0.0012 32.4 4.4 47 227-278 158-207 (212)
5 TIGR01106 ATPase-IIC_X-K sodiu 34.8 1.3E+02 0.0029 35.7 8.1 43 300-342 809-853 (997)
6 COG3114 CcmD Heme exporter pro 27.0 1.6E+02 0.0034 24.5 4.9 41 248-288 9-58 (67)
7 PF01956 DUF106: Integral memb 23.0 52 0.0011 30.3 1.8 41 203-245 113-153 (168)
8 PF15444 TMEM247: Transmembran 18.6 1.3E+02 0.0028 29.6 3.5 23 108-130 193-215 (218)
9 PF02228 Gag_p19: Major core p 15.4 2.5E+02 0.0054 24.3 4.0 35 191-226 18-55 (92)
10 KOG3801 Uncharacterized conser 15.3 2.3E+02 0.005 25.0 3.9 44 190-234 2-45 (94)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=2.8e-165 Score=1279.67 Aligned_cols=389 Identities=56% Similarity=1.048 Sum_probs=367.8
Q ss_pred chhHhHHHHHHHHHhhhhccccccccccccCccccCCCCCcccccCCCCCcccccccccccccccccchhhhhhhhhhcc
Q 012977 2 AELMLLGFISLLLTVFQNTISKICVHQDVLDNMLPCKRNKTAESEGQNSHVTTTSHFQTFFSSSISGTAKRLLAEEESAA 81 (452)
Q Consensus 2 eELMLLGFISLLLtv~q~~IskICIp~~~~~~mlPC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RRlLa~~~~~~ 81 (452)
||||||||||||||++|++|+|||||++++++|+||+..+..+. ..+ ..++||+|+.+++
T Consensus 55 ~ELMlLGfiSLlLt~~q~~IskICIp~~~~~~~lPC~~~~~~~~--------~~~----------~~~~r~ll~~~~~-- 114 (478)
T PF03094_consen 55 EELMLLGFISLLLTVFQNPISKICIPSSYASTMLPCKPPEESSK--------EGS----------SHNRRRLLASGAA-- 114 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHeecChhHHhcccCCCCcccccc--------ccc----------chhhhhhhhhhcc--
Confidence 79999999999999999999999999999999999986441111 010 1247999984332
Q ss_pred cccCccccCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhhhhccCC--CccccccceEEEee
Q 012977 82 SERGYCAQKNKVPLLSTEALHHLHIFIFVLAIVHVTFCVLTILFAGARIRQWKNWEDSIAKQDF--DPEQVLKTKVTHVH 159 (452)
Q Consensus 82 ~~~~~C~~kGkvpliS~egLHQLHIFIFVLAv~HV~Ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~--~~~p~~~~r~~~~~ 159 (452)
+++++|++||||||+|+|||||||||||||||+||+|||+||+||++|||+||+||+|++++++ .+|| +|++++|
T Consensus 115 ~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~---~r~~~~~ 191 (478)
T PF03094_consen 115 EGSDYCPKKGKVPLISAEGLHQLHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDP---RRFRLTR 191 (478)
T ss_pred cccCcccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCc---ceeeeec
Confidence 2578999889999999999999999999999999999999999999999999999999999765 5788 9999999
Q ss_pred ecchhhhhccCCCCCchhHHHHHHHHHHhccCCchhhHHHHHHHHHhhhcCCCCCCchHHHHHHHhhhccccccchhhHH
Q 012977 160 QHAFIKEHFLGYGKDSALLGWMLSFFKQFYASITKADYVTLRLGFIMTHCRGSPKFNFHKYMIRALEDDFKRVVGISWYL 239 (452)
Q Consensus 160 qt~F~~~h~~~~~~~~~~l~Wi~cFfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FdFhkYi~RsLE~DFk~VVGIS~~l 239 (452)
|++|+|+|+ ++|++++++.|++|||||||+||+|+||+|||+|||++|++++++||||+||+||||||||+||||||+|
T Consensus 192 qt~F~r~h~-~~w~~~~~~~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~l 270 (478)
T PF03094_consen 192 QTTFVRRHT-SFWSKSPVLSWIVCFFRQFYGSVTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYL 270 (478)
T ss_pred ccHHHHhhc-CCcccChhHHhHHHHHHHhhccccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccH
Confidence 999999997 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCcchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhhcccccCcceecCCCCccccccchHHHHHHH
Q 012977 240 WIFVVIFLLLNINEWHTYFWIAFIPFILLLAVGAKLEHVISQLAHEVAEKHIAIEGELVVQPSDQHFWFNRPQIVLFLIH 319 (452)
Q Consensus 240 W~~vviFlLlnv~Gw~~yfWlsfiPlillL~VGtKLq~IIt~lAlei~~~~~~~~G~p~V~psD~lFWF~rP~llL~LIh 319 (452)
|++||+|||+|++|||+|||+||||++++|+||||||+||++||+|++|++++++|+|+|+|+|++|||+||+|||+|||
T Consensus 271 W~~vv~fll~nv~gw~~yfW~sfipl~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lih 350 (478)
T PF03094_consen 271 WAFVVLFLLLNVHGWHTYFWLSFIPLILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIH 350 (478)
T ss_pred hhhhheeeeecCCcceeEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCcccccCCccceeceeeeehhhhhcccccCCchhhHhhhccccccccccchhHHHHHHh
Q 012977 320 FILFQNSFEIAFFFWILIQYGFDSCIMGQVCYIVPRLIIGVFIQVLCSYSTLPLYAIVTQMGSSFKKAIFEENVQVGIVG 399 (452)
Q Consensus 320 fiLFQNAFelAfF~W~~~~fG~~SC~~~~~~~ii~Rl~~Gv~vQ~lCSY~TLPLYALVTQMGs~~K~~if~e~v~~~l~~ 399 (452)
|||||||||||||+|+||+||++||||++.+++++|+++||++|++|||+|||||||||||||+||++||+|+|+++|++
T Consensus 351 filFqnAFela~f~w~~~~~g~~sC~~~~~~~~i~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~ 430 (478)
T PF03094_consen 351 FILFQNAFELAFFFWIWWQFGFDSCFMENTEYIIIRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKK 430 (478)
T ss_pred HHHHHhHHHHHHHHHHHhcCCCceeEecCccceeeehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCC
Q 012977 400 WAEKVRRKKDPKAAK 414 (452)
Q Consensus 400 W~~~akkk~~~~~~~ 414 (452)
||++||||+++++++
T Consensus 431 W~~~ak~~~~~~~~~ 445 (478)
T PF03094_consen 431 WHKKAKKKKKHKKSA 445 (478)
T ss_pred HHHHHHHhhccCCCC
Confidence 999999999887644
No 2
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=41.22 E-value=12 Score=26.81 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=7.7
Q ss_pred CcceecCCCC
Q 012977 295 GELVVQPSDQ 304 (452)
Q Consensus 295 G~p~V~psD~ 304 (452)
=+|+||||||
T Consensus 23 LD~VvKPR~D 32 (32)
T TIGR03777 23 LDPVVKPRDD 32 (32)
T ss_pred cccccccCCC
Confidence 3678888886
No 3
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=37.81 E-value=19 Score=36.01 Aligned_cols=38 Identities=34% Similarity=0.763 Sum_probs=26.3
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHhhhccCcchhhhhh
Q 012977 218 HKYMIRALEDDFKRVVGISWYLWIFVVIFLLLNINEWHTYFWI 260 (452)
Q Consensus 218 hkYi~RsLE~DFk~VVGIS~~lW~~vviFlLlnv~Gw~~yfWl 260 (452)
+.|=.| +||+-.++| +..||-||+|++|.=. .+.++|+
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wm 62 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWM 62 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHH
Confidence 444444 899999988 7899999988776522 2555553
No 4
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=36.10 E-value=55 Score=32.38 Aligned_cols=47 Identities=34% Similarity=0.692 Sum_probs=29.6
Q ss_pred hccccccchhhHHHHHHHHHhhhccCcchhhhhhhhHHH---HHHHHhhhHHHHH
Q 012977 227 DDFKRVVGISWYLWIFVVIFLLLNINEWHTYFWIAFIPF---ILLLAVGAKLEHV 278 (452)
Q Consensus 227 ~DFk~VVGIS~~lW~~vviFlLlnv~Gw~~yfWlsfiPl---illL~VGtKLq~I 278 (452)
|-...+-||.|-+|++.-+..++ ..-+|+.++=+ -+++=||+|+--|
T Consensus 158 egi~~~SGiaWalWi~gF~~Ff~-----~P~~Wl~~L~lAg~gl~iKV~sKlgLI 207 (212)
T PF09878_consen 158 EGIEGVSGIAWALWIAGFIGFFL-----FPQYWLLALMLAGCGLLIKVGSKLGLI 207 (212)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhcchhhhhhhhhhhh
Confidence 44567789999999876554444 23456654433 3566778777543
No 5
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=34.76 E-value=1.3e+02 Score=35.66 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=33.2
Q ss_pred cCCC--CccccccchHHHHHHHHHHhhhhhHHHHHHHHHHHhCCc
Q 012977 300 QPSD--QHFWFNRPQIVLFLIHFILFQNSFEIAFFFWILIQYGFD 342 (452)
Q Consensus 300 ~psD--~lFWF~rP~llL~LIhfiLFQNAFelAfF~W~~~~fG~~ 342 (452)
+|++ +=..++++.++...+-..++|-.+.++.|+|.++.+|+.
T Consensus 809 ~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~ 853 (997)
T TIGR01106 809 QPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFL 853 (997)
T ss_pred CCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4544 346778877777777888899999999999998877753
No 6
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=27.02 E-value=1.6e+02 Score=24.49 Aligned_cols=41 Identities=22% Similarity=0.483 Sum_probs=23.2
Q ss_pred hhccCcchhhhhh----hhHHHHHHHHhhh-----HHHHHHHHHHHHHHh
Q 012977 248 LLNINEWHTYFWI----AFIPFILLLAVGA-----KLEHVISQLAHEVAE 288 (452)
Q Consensus 248 Llnv~Gw~~yfWl----sfiPlillL~VGt-----KLq~IIt~lAlei~~ 288 (452)
++|..|...|-|+ +.+|++++.+.-- -|+.|.-+.|-|..-
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aReaR~ 58 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVARQRAREARL 58 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788887 4567664444332 244455555555433
No 7
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=23.04 E-value=52 Score=30.34 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=24.7
Q ss_pred HHHhhhcCCCCCCchHHHHHHHhhhccccccchhhHHHHHHHH
Q 012977 203 GFIMTHCRGSPKFNFHKYMIRALEDDFKRVVGISWYLWIFVVI 245 (452)
Q Consensus 203 gFI~~H~~~~~~FdFhkYi~RsLE~DFk~VVGIS~~lW~~vvi 245 (452)
||+..-.+-++...|+.-..|.+++..-.- .||.-|-|.+.
T Consensus 113 g~vv~klPFpl~~~f~~~~qrgl~~~d~~~--~s~i~wYfL~s 153 (168)
T PF01956_consen 113 GFVVAKLPFPLTGRFKSMLQRGLEGLDVSY--VSSISWYFLCS 153 (168)
T ss_pred hcceEEeeccccHHHhHHhhcCCCCCcccH--hHHHHHHHHHH
Confidence 666666666678888888888885422222 24444444443
No 8
>PF15444 TMEM247: Transmembrane protein 247
Probab=18.59 E-value=1.3e+02 Score=29.56 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012977 108 IFVLAIVHVTFCVLTILFAGARI 130 (452)
Q Consensus 108 IFVLAv~HV~Ys~lTm~Lg~~Ki 130 (452)
||+|--=|-+||+.+++|...|.
T Consensus 193 vfflfskhylfciaaillclikt 215 (218)
T PF15444_consen 193 VFFLFSKHYLFCIAAILLCLIKT 215 (218)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 46677778899999999999984
No 9
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=15.38 E-value=2.5e+02 Score=24.31 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=19.9
Q ss_pred CCchhhHHHHHHHHHhhhcCCCCCCchHH---HHHHHhh
Q 012977 191 SITKADYVTLRLGFIMTHCRGSPKFNFHK---YMIRALE 226 (452)
Q Consensus 191 SV~k~DYltLR~gFI~~H~~~~~~FdFhk---Yi~RsLE 226 (452)
.++-.|++.+|..=-.-. +..+.||||. |++-++|
T Consensus 18 Gls~hhWLNflQaAyRL~-PgPS~~DF~qLr~flk~alk 55 (92)
T PF02228_consen 18 GLSTHHWLNFLQAAYRLQ-PGPSSFDFHQLRNFLKLALK 55 (92)
T ss_dssp SSTHHHHHHHHHHHHHSS----STTTHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHHHHc
Confidence 345566766665544433 4557999996 6665554
No 10
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=15.34 E-value=2.3e+02 Score=24.96 Aligned_cols=44 Identities=16% Similarity=0.427 Sum_probs=37.1
Q ss_pred cCCchhhHHHHHHHHHhhhcCCCCCCchHHHHHHHhhhccccccc
Q 012977 190 ASITKADYVTLRLGFIMTHCRGSPKFNFHKYMIRALEDDFKRVVG 234 (452)
Q Consensus 190 ~SV~k~DYltLR~gFI~~H~~~~~~FdFhkYi~RsLE~DFk~VVG 234 (452)
.+|++.+-+.|=..+|.+- ..-|.|||..|-.|-.-|-|+.--.
T Consensus 2 ~~~sr~qvlsLyr~~lr~s-~qfp~YNyReY~~RrtRD~Fr~Nkn 45 (94)
T KOG3801|consen 2 QMVSRRQVLSLYRNLLRES-KQFPQYNYREYFQRRTRDTFRANKN 45 (94)
T ss_pred CcccHHHHHHHHHHHHHHH-hhCCcccHHHHHHHHHHHHHHHhcc
Confidence 4688999999999999885 5568999999999999999986533
Done!