Query 012977
Match_columns 452
No_of_seqs 150 out of 243
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 19:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wy3_A Villin; structural prot 9.6 51 0.0017 22.9 -0.5 12 226-237 3-14 (35)
2 1und_A Advillin, P92; actin bi 9.4 53 0.0018 23.1 -0.5 12 226-237 5-16 (37)
3 2w7n_A TRFB transcriptional re 9.0 1.5E+02 0.0053 24.7 2.1 25 386-410 75-99 (101)
4 2ztb_A Crystal protein; beta-h 7.6 73 0.0025 31.1 -0.6 17 299-315 203-219 (252)
5 2rlw_A PLNF; toxin; NMR {Lacto 7.6 57 0.0019 22.2 -0.9 26 217-244 2-27 (34)
6 2j3w_A Sedlin, trafficking pro 7.5 1.4E+02 0.0047 25.8 1.2 20 381-400 120-139 (142)
7 2l6x_A GPR, green-light absorb 7.3 9.6E+02 0.033 22.3 7.1 50 196-260 58-109 (243)
8 1vf6_C Maguk P55 subfamily mem 7.2 1.9E+02 0.0065 23.0 1.8 18 312-329 40-57 (72)
9 2xz2_A CSTF-50, isoform B; RNA 7.1 1.4E+02 0.0047 23.6 0.9 14 292-306 42-55 (66)
10 1jek_B ENV polyprotein; envelo 6.2 1.6E+02 0.0054 20.7 0.7 12 132-143 1-12 (36)
No 1
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=9.63 E-value=51 Score=22.90 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=9.5
Q ss_pred hhccccccchhh
Q 012977 226 EDDFKRVVGISW 237 (452)
Q Consensus 226 E~DFk~VVGIS~ 237 (452)
|+||+.|.|+|.
T Consensus 3 d~dF~~vFgmsr 14 (35)
T 1wy3_A 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888875
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=9.42 E-value=53 Score=23.07 Aligned_cols=12 Identities=50% Similarity=0.786 Sum_probs=9.8
Q ss_pred hhccccccchhh
Q 012977 226 EDDFKRVVGISW 237 (452)
Q Consensus 226 E~DFk~VVGIS~ 237 (452)
|+||..|.|+|.
T Consensus 5 d~dF~~vFgmsr 16 (37)
T 1und_A 5 EQDFVSVFGITR 16 (37)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 678888888875
No 3
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=8.99 E-value=1.5e+02 Score=24.67 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=18.7
Q ss_pred ccccchhHHHHHHhHHHHHhhhcCC
Q 012977 386 KAIFEENVQVGIVGWAEKVRRKKDP 410 (452)
Q Consensus 386 ~~if~e~v~~~l~~W~~~akkk~~~ 410 (452)
..+.+++.+.-++.|++.||+|...
T Consensus 75 ~v~lP~~~a~~v~~~~~~a~~~~~~ 99 (101)
T 2w7n_A 75 TAVLPEHQAYIVRKWEADAKKKQET 99 (101)
T ss_dssp EEEECHHHHHHHHHHHHHHHC----
T ss_pred eeecCHHHHHHHHHHHHHHHHhhcc
Confidence 4567899999999999999987654
No 4
>2ztb_A Crystal protein; beta-hairpin, toxin; 2.38A {Bacillus thuringiensis serovar dakota}
Probab=7.63 E-value=73 Score=31.07 Aligned_cols=17 Identities=47% Similarity=0.901 Sum_probs=12.8
Q ss_pred ecCCCCccccccchHHH
Q 012977 299 VQPSDQHFWFNRPQIVL 315 (452)
Q Consensus 299 V~psD~lFWF~rP~llL 315 (452)
|-|++.+|||..++-||
T Consensus 203 v~~~gHyfWf~~v~~ll 219 (252)
T 2ztb_A 203 VGPGGHYFWFNPARDVL 219 (252)
T ss_dssp ETTTTEEEEEEEHHHHS
T ss_pred ccCCCcEEEeCCHHHHh
Confidence 45788888888877665
No 5
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=7.61 E-value=57 Score=22.21 Aligned_cols=26 Identities=31% Similarity=0.698 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhccccccchhhHHHHHHH
Q 012977 217 FHKYMIRALEDDFKRVVGISWYLWIFVV 244 (452)
Q Consensus 217 FhkYi~RsLE~DFk~VVGIS~~lW~~vv 244 (452)
||.|-.|....++|..|| |.=|++..
T Consensus 2 fhaysargvrnnyksavg--padwvisa 27 (34)
T 2rlw_A 2 FHAYSARGVRNNYKSAVG--PADWVISA 27 (34)
T ss_dssp CSSSCHHHHHHHHHHHHH--HHHHHHHH
T ss_pred cchhhccchhhccccccC--hHHHHHHH
Confidence 788889999999999999 66776554
No 6
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=7.50 E-value=1.4e+02 Score=25.81 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=10.5
Q ss_pred cccccccccchhHHHHHHhH
Q 012977 381 GSSFKKAIFEENVQVGIVGW 400 (452)
Q Consensus 381 Gs~~K~~if~e~v~~~l~~W 400 (452)
|...+-+.|+++|.+.+++|
T Consensus 120 ~~pI~s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 120 NSPIRSSAFDRKVQFLGKKH 139 (142)
T ss_dssp TCCCCCHHHHHHHHHHHHHH
T ss_pred CCceecHHHHHHHHHHHHHh
Confidence 44455555555555555554
No 7
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=7.29 E-value=9.6e+02 Score=22.34 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhhcCCCCCCchHHHHHHHhhhccccccchhhHHHHHHHHHhhhccCc--chhhhhh
Q 012977 196 DYVTLRLGFIMTHCRGSPKFNFHKYMIRALEDDFKRVVGISWYLWIFVVIFLLLNINE--WHTYFWI 260 (452)
Q Consensus 196 DYltLR~gFI~~H~~~~~~FdFhkYi~RsLE~DFk~VVGIS~~lW~~vviFlLlnv~G--w~~yfWl 260 (452)
-|++||.|+..+. ..| ++.+|+-=. ++.| ++.+-+.++++..| +...+|-
T Consensus 58 ~Yf~Ma~~~~~~~--~~~--~~~RYidWl----------lTvP-Lllvel~Li~~~~g~~~~~~~~~ 109 (243)
T 2l6x_A 58 HYMYMRGVWIETG--DSP--TVFRYIDWL----------LTVP-LLICEFYLILAAATNVAGSLFKK 109 (243)
T ss_dssp HHHHHHHHHHHHS--CCC--HHHHHHHHH----------HHHH-HHHHHHHHHHHTTTSCCTHHHHH
T ss_pred HHHHHHHhhcccC--Ccc--ceeehhcHH----------HHHH-HHHHHHHHHHhccCCccHHHHHH
Confidence 4999999988762 222 566665321 1122 34455666655533 6667763
No 8
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=7.23 E-value=1.9e+02 Score=23.04 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhhhhhHH
Q 012977 312 QIVLFLIHFILFQNSFEI 329 (452)
Q Consensus 312 ~llL~LIhfiLFQNAFel 329 (452)
.+||-|.|=.=|||||-|
T Consensus 40 ~lllqL~~~~DFQ~A~kI 57 (72)
T 1vf6_C 40 SLLLQLVQNRDFQNAFKI 57 (72)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 578889999999999976
No 9
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=7.10 E-value=1.4e+02 Score=23.62 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=10.6
Q ss_pred cccCcceecCCCCcc
Q 012977 292 AIEGELVVQPSDQHF 306 (452)
Q Consensus 292 ~~~G~p~V~psD~lF 306 (452)
.++-+| +.|||+||
T Consensus 42 ~v~~~~-c~PSdrL~ 55 (66)
T 2xz2_A 42 LVKADQ-CAPSERLL 55 (66)
T ss_dssp HHTCCC-CCCCCHHH
T ss_pred hcCCCC-CCcHHHHH
Confidence 345667 89999986
No 10
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=6.23 E-value=1.6e+02 Score=20.71 Aligned_cols=12 Identities=33% Similarity=1.215 Sum_probs=8.6
Q ss_pred chHHHhhhhhcc
Q 012977 132 QWKNWEDSIAKQ 143 (452)
Q Consensus 132 ~Wk~WE~e~~~~ 143 (452)
.|..||+++...
T Consensus 1 TWqqWereI~~~ 12 (36)
T 1jek_B 1 XWQQWEEEIEQH 12 (36)
T ss_dssp -CHHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 388899888653
Done!