Query 012977
Match_columns 452
No_of_seqs 150 out of 243
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 19:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012977.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012977hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 27.5 13 0.00095 26.0 1.8 18 312-329 29-46 (51)
2 d1xrda1 f.3.1.1 (A:1-52) Light 11.4 53 0.0039 23.1 1.9 16 101-116 14-30 (52)
3 d1ug0a_ a.217.1.1 (A:) Splicin 10.5 80 0.0058 23.7 2.9 54 273-339 25-80 (88)
4 d1yu8x1 a.14.1.1 (X:42-76) Vil 9.8 23 0.0017 23.0 -0.5 12 226-237 3-14 (35)
5 d1unda_ a.14.1.1 (A:) Advillin 9.6 24 0.0018 23.1 -0.5 12 226-237 4-15 (36)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 8.0 1.1E+02 0.0078 19.9 2.2 13 106-118 22-34 (37)
7 d1q1ha_ a.4.5.41 (A:) Transcri 7.8 31 0.0023 26.7 -0.7 7 253-259 74-80 (88)
8 d2j3wa1 d.110.4.3 (A:1-140) Se 7.0 70 0.0051 25.8 1.2 34 363-400 104-137 (140)
9 d1h5oa_ g.9.1.2 (A:) Crotamine 5.7 1.1E+02 0.0081 20.1 1.4 11 21-31 14-24 (42)
10 d1jvra_ a.61.1.2 (A:) HTLV-II 5.0 3.6E+02 0.026 21.8 4.5 17 210-226 37-56 (137)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.53 E-value=13 Score=25.96 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhhhhhHH
Q 012977 312 QIVLFLIHFILFQNSFEI 329 (452)
Q Consensus 312 ~llL~LIhfiLFQNAFel 329 (452)
.++|-|.|=.=|||||.|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 578999999999999986
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=11.39 E-value=53 Score=23.10 Aligned_cols=16 Identities=50% Similarity=0.843 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHH-HH
Q 012977 101 LHHLHIFIFVLAIV-HV 116 (452)
Q Consensus 101 LHQLHIFIFVLAv~-HV 116 (452)
+--++.|+|+||+. |.
T Consensus 14 lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 14 LVGLATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44578999999964 54
No 3
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.46 E-value=80 Score=23.67 Aligned_cols=54 Identities=24% Similarity=0.230 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHhhcccccCccee-cCCCCcccccc-chHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 012977 273 AKLEHVISQLAHEVAEKHIAIEGELVV-QPSDQHFWFNR-PQIVLFLIHFILFQNSFEIAFFFWILIQY 339 (452)
Q Consensus 273 tKLq~IIt~lAlei~~~~~~~~G~p~V-~psD~lFWF~r-P~llL~LIhfiLFQNAFelAfF~W~~~~f 339 (452)
.++..||.++|.=|++.....+-...- +.+|..|||=+ |. .=.-+|+-|-+++|
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~d~~-------------~~~~~YY~~kl~e~ 80 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKN-------------SREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSS-------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCceeeCCCC-------------CCCcHHHHHHHHHH
Confidence 468899999999998875544322211 36788899843 33 22335666766665
No 4
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.77 E-value=23 Score=23.02 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=9.1
Q ss_pred hhccccccchhh
Q 012977 226 EDDFKRVVGISW 237 (452)
Q Consensus 226 E~DFk~VVGIS~ 237 (452)
++||..|.|+|-
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888874
No 5
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.57 E-value=24 Score=23.09 Aligned_cols=12 Identities=50% Similarity=0.786 Sum_probs=9.4
Q ss_pred hhccccccchhh
Q 012977 226 EDDFKRVVGISW 237 (452)
Q Consensus 226 E~DFk~VVGIS~ 237 (452)
|+||..|.|+|-
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 578888888875
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.00 E-value=1.1e+02 Score=19.89 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 012977 106 IFIFVLAIVHVTF 118 (452)
Q Consensus 106 IFIFVLAv~HV~Y 118 (452)
.+||||||.--.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999876655
No 7
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=7.79 E-value=31 Score=26.67 Aligned_cols=7 Identities=43% Similarity=1.891 Sum_probs=4.9
Q ss_pred cchhhhh
Q 012977 253 EWHTYFW 259 (452)
Q Consensus 253 Gw~~yfW 259 (452)
||++|+|
T Consensus 74 gw~~Y~W 80 (88)
T d1q1ha_ 74 GWFIYYW 80 (88)
T ss_dssp CCCEEEE
T ss_pred CcEEEEE
Confidence 6777766
No 8
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.04 E-value=70 Score=25.79 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=22.9
Q ss_pred hhcccccCCchhhHhhhccccccccccchhHHHHHHhH
Q 012977 363 QVLCSYSTLPLYAIVTQMGSSFKKAIFEENVQVGIVGW 400 (452)
Q Consensus 363 Q~lCSY~TLPLYALVTQMGs~~K~~if~e~v~~~l~~W 400 (452)
++-+-|+.=|+|. .|+..+-..|+++|++..++|
T Consensus 104 ~lYv~~v~NPfy~----~~~pI~s~~Fd~~v~~~~~~~ 137 (140)
T d2j3wa1 104 DLYIKFAMNPFYE----PNSPIRSSAFDRKVQFLGKKH 137 (140)
T ss_dssp HHHHHHHHSTTCC----TTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCccCC----CCCcccCHHHHHHHHHHHHHH
Confidence 4445566667774 455667777888888777776
No 9
>d1h5oa_ g.9.1.2 (A:) Crotamine {South american rattlesnake (Crotalus durissus terrificus) [TaxId: 8732]}
Probab=5.74 E-value=1.1e+02 Score=20.10 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=8.0
Q ss_pred ccccccccccc
Q 012977 21 ISKICVHQDVL 31 (452)
Q Consensus 21 IskICIp~~~~ 31 (452)
-.+||+|++--
T Consensus 14 k~~iclppssd 24 (42)
T d1h5oa_ 14 KEKICLPPSSD 24 (42)
T ss_dssp TTSCCSSSSCB
T ss_pred cceeECCCccc
Confidence 35799998753
No 10
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=5.02 E-value=3.6e+02 Score=21.81 Aligned_cols=17 Identities=29% Similarity=0.727 Sum_probs=11.6
Q ss_pred CCCCCCchHH---HHHHHhh
Q 012977 210 RGSPKFNFHK---YMIRALE 226 (452)
Q Consensus 210 ~~~~~FdFhk---Yi~RsLE 226 (452)
...++||||. |++=+||
T Consensus 37 PgPS~~DF~qLr~flklalk 56 (137)
T d1jvra_ 37 PGPSDFDFQQLRRFLKLALK 56 (137)
T ss_dssp CCCSTTTHHHHHHHHHHHHT
T ss_pred CCCCcccHHHHHHHHHHHHh
Confidence 3447999996 6665554
Done!