Your job contains 1 sequence.
>012978
MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCP
FGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDID
EMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAY
FKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI
GDSLYPMDIVRIFNFSNEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSS
SVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSSMIVVA
PELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQV
LPSRTHPCMQMSGCGGYILSGTRTATNASSQQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012978
(452 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043714 - symbol:AT2G45730 species:3702 "Arabi... 1315 3.3e-134 1
DICTYBASE|DDB_G0281175 - symbol:trmt6 "tRNA(m1A58)-methyl... 548 6.3e-53 1
ZFIN|ZDB-GENE-051120-141 - symbol:trmt6 "tRNA methyltrans... 453 7.3e-43 1
UNIPROTKB|F1NF40 - symbol:TRMT6 "Uncharacterized protein"... 260 6.9e-40 2
RGD|1308877 - symbol:Trmt6 "tRNA methyltransferase 6 homo... 272 1.2e-39 2
UNIPROTKB|Q2T9V5 - symbol:TRMT6 "tRNA (adenine(58)-N(1))-... 272 2.6e-39 2
UNIPROTKB|F1SBM2 - symbol:TRMT6 "Uncharacterized protein"... 268 4.4e-39 2
UNIPROTKB|F1P960 - symbol:TRMT6 "Uncharacterized protein"... 270 6.4e-39 2
UNIPROTKB|Q9UJA5 - symbol:TRMT6 "tRNA (adenine(58)-N(1))-... 266 8.2e-39 2
MGI|MGI:1914176 - symbol:Trmt6 "tRNA methyltransferase 6"... 270 1.0e-38 2
FB|FBgn0031832 - symbol:CG9596 species:7227 "Drosophila m... 210 3.6e-27 2
WB|WBGene00014120 - symbol:ZK858.7 species:6239 "Caenorha... 232 1.3e-25 2
CGD|CAL0000045 - symbol:orf19.500 species:5476 "Candida a... 202 4.0e-25 2
UNIPROTKB|B4DUV6 - symbol:TRMT6 "tRNA (adenine(58)-N(1))-... 210 5.0e-24 2
POMBASE|SPBC800.08 - symbol:gcd10 "tRNA (m1A) methyltrans... 188 4.5e-22 3
SGD|S000005006 - symbol:GCD10 "Subunit of tRNA (1-methyla... 126 2.9e-10 2
UNIPROTKB|F1NNM7 - symbol:TRMT6 "Uncharacterized protein"... 124 1.4e-05 1
>TAIR|locus:2043714 [details] [associations]
symbol:AT2G45730 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR007316 InterPro:IPR017423
Pfam:PF04189 PIRSF:PIRSF038170 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006446 GO:GO:0003743 EMBL:AC004665
KO:K03256 eggNOG:NOG254601 OMA:LLEFVAP PANTHER:PTHR12945
UniGene:At.28663 UniGene:At.36601 EMBL:AY065099 EMBL:AY128744
IPI:IPI00528855 PIR:T00886 PIR:T02474 RefSeq:NP_566054.1
ProteinModelPortal:O80846 PaxDb:O80846 PRIDE:O80846
EnsemblPlants:AT2G45730.1 GeneID:819181 KEGG:ath:AT2G45730
TAIR:At2g45730 HOGENOM:HOG000264937 InParanoid:O80846
PhylomeDB:O80846 ProtClustDB:CLSN2917336 ArrayExpress:O80846
Genevestigator:O80846 Uniprot:O80846
Length = 446
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 268/447 (59%), Positives = 325/447 (72%)
Query: 1 MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCP 60
MS++ DP N + EGCSVLLDINDGDRLVFARL+SG+ LKIGNKN SL+PLIG P
Sbjct: 10 MSEDKKPQDP--NPRFACEGCSVLLDINDGDRLVFARLSSGAILKIGNKNYSLKPLIGAP 67
Query: 61 FGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDID 120
FGSLFQV+ G++G LSR++P QE + + RDNR IVD+N+AQ L+GE+I+
Sbjct: 68 FGSLFQVETGEDGSFLSRILPIK----QESNSNNVMDDSRDNREIVDNNEAQNLTGEEIE 123
Query: 121 EMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAY 180
MRR+GA G+EI+EALIANS TF+KK SQE RRPFARSICEAY
Sbjct: 124 AMRREGAKGDEIIEALIANSKTFDKKFQLSQEKYKLKKQKKYAPKLLLRRPFARSICEAY 183
Query: 181 FKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240
FKK PARIGFLRVD LSLLL+M NV A SDVLVVDM GGL+TGAVAERLGGTGYVCNT
Sbjct: 184 FKKYPARIGFLRVDALSLLLTMANVTAYSDVLVVDMVGGLVTGAVAERLGGTGYVCNTYK 243
Query: 241 GDSLYPMDIVRIFNFSNEICKSIVRAXXXXXXXXXXXXXXXX-QLESACNMEIQSNEQKS 299
G S YP+++VR+FNFS+++ K IV++ Q E C E NE +
Sbjct: 244 GSSPYPVEMVRMFNFSDKVLKRIVQSSINELSSAKTASTEGNNQQEGVCKAENNINETAT 303
Query: 300 SSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSSMIVV 359
S V +E+IS+++E GV D+++ P +KI K+ K G KAS+ET+++W+ENGFSS+I+
Sbjct: 304 SDVMVEEISVTTEAGVVDIVV-----PESKIIKAAKAGAKASKETIEMWQENGFSSLIMA 358
Query: 360 APELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQ 419
A + DPW KD+LPLLSYSAPFAIYHQYLQPLATCMH LQ KMAI LQI+EPWLREYQ
Sbjct: 359 AQDQDPWIVAKDVLPLLSYSAPFAIYHQYLQPLATCMHKLQQGKMAINLQITEPWLREYQ 418
Query: 420 VLPSRTHPCMQMSGCGGYILSGTRTAT 446
VLPSR+HP MQMS GGY+LSG R +T
Sbjct: 419 VLPSRSHPHMQMSSFGGYVLSGIRIST 445
>DICTYBASE|DDB_G0281175 [details] [associations]
symbol:trmt6 "tRNA(m1A58)-methyltransferase subunit"
species:44689 "Dictyostelium discoideum" [GO:0006413 "translational
initiation" evidence=IEA] [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0016429 "tRNA
(adenine-N1-)-methyltransferase activity" evidence=ISS] [GO:0031515
"tRNA (m1A) methyltransferase complex" evidence=ISS] [GO:0030488
"tRNA methylation" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR007316 Pfam:PF04189 dictyBase:DDB_G0281175
GO:GO:0005634 GenomeReviews:CM000152_GR EMBL:AAFI02000040
GO:GO:0003743 KO:K03256 GO:GO:0030488 GO:GO:0031515
eggNOG:NOG254601 OMA:LLEFVAP PANTHER:PTHR12945 RefSeq:XP_640865.1
ProteinModelPortal:Q54UB1 EnsemblProtists:DDB0238374 GeneID:8622921
KEGG:ddi:DDB_G0281175 ProtClustDB:CLSZ2729048 Uniprot:Q54UB1
Length = 521
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 140/425 (32%), Positives = 216/425 (50%)
Query: 19 EGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSR 78
EG V+LDIN+G++ ++ GS +KIG K + +IG + S FQV N K L R
Sbjct: 37 EGDHVILDINNGEKFSVIKVKLGSKVKIGKKQILINSIIGESYYSSFQVSNEKN--TLER 94
Query: 79 VIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIA 138
+ DD + +++ DNR + +N AQ L+ EDI+EM+++G I++ ++
Sbjct: 95 ITQKEIDD-RLNNLVELNQNDADNRNLDQNNTAQKLTQEDINEMKQKGTDSNTIIKTIVE 153
Query: 139 NSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPARIGFLRVDMLSL 198
NS +F+ KTSFSQ +P +S+ EAY+KK+ +I LR D
Sbjct: 154 NSESFKTKTSFSQIKYLKKKIKKYSTIVKIIKPTLKSLTEAYYKKDSRKICGLRFDSFGQ 213
Query: 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNE 258
LL++GN+ ANS VLVV+ GL+TG++AER+ G G + + IG + IV F F+ +
Sbjct: 214 LLTLGNIRANSQVLVVETCMGLVTGSIAERMNGQGTILSAYIGKGP-SLSIVNNFGFNTD 272
Query: 259 ICKSIVRAXXXXXXXXXXXXXXXXQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDL 318
+ +I +L + I + K E EN V D
Sbjct: 273 VLNTIY-PFNLNITSVLNKGEDISKLPPTASSGIYDKQVKEKEKEKE----KDEN-VKDE 326
Query: 319 ILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSY 378
E+ I++ + + +++ +KL K+ G S+++V + P + + P L+
Sbjct: 327 -KESGEEAKTIINQRN---DTSNENIVKLLKDGGVWSLVIVT-KYSPLNILLSCWPYLNS 381
Query: 379 SAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYI 438
S F IY Q+ QPL L +MA+ QISE W+RE+QVLP RTHP M M G G+I
Sbjct: 382 SGSFVIYSQFPQPLMEVHQFLHKNQMAVNQQISEIWMREHQVLPKRTHPMMGMDGASGFI 441
Query: 439 LSGTR 443
L GT+
Sbjct: 442 LYGTK 446
>ZFIN|ZDB-GENE-051120-141 [details] [associations]
symbol:trmt6 "tRNA methyltransferase 6 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0006413 "translational
initiation" evidence=IEA] [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0006446 "regulation of
translational initiation" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR007316
InterPro:IPR017423 Pfam:PF04189 PIRSF:PIRSF038170
ZFIN:ZDB-GENE-051120-141 GO:GO:0006446 GO:GO:0003743 KO:K03256
CTD:51605 HOGENOM:HOG000232007 HOVERGEN:HBG061231 PANTHER:PTHR12945
EMBL:BC109462 IPI:IPI00492432 RefSeq:NP_001032469.1
UniGene:Dr.92067 ProteinModelPortal:Q32LR0 GeneID:563475
KEGG:dre:563475 InParanoid:Q32LR0 NextBio:20884914 Uniprot:Q32LR0
Length = 464
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 118/391 (30%), Positives = 192/391 (49%)
Query: 57 IGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSG 116
+G +G++F++ G G + + D + KE Q DNR IVDD ++Q L+
Sbjct: 52 VGQLYGTMFEIVAG--GSLKHKPVKRAGDSLDSKEAGQ------DNRHIVDDGRSQKLTR 103
Query: 117 EDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSI 176
+DI+ ++ QG G+EIV+ LI NS TF+ KT F+QE +P R +
Sbjct: 104 DDIETLKEQGLKGQEIVQQLIDNSTTFKDKTEFAQEKYIKKKKKKYESDITVLKPSTRLL 163
Query: 177 CEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVC 236
Y + P +I LR D L+ +L++GN+ A S ++V + GL+ G+V ER+GG G V
Sbjct: 164 AMMYHGREPGKICHLRYDTLAQMLTLGNIHAGSKIIVFETCAGLVLGSVMERMGGFGSVI 223
Query: 237 NTCIGDSLYPMDI-VRIFNFSNEICKSIVRAXXXXXXXXXXXXXXXXQLESACNMEIQSN 295
G P + F F + +++ + ++ + ++
Sbjct: 224 QMFPGGG--PTRAGMESFGFPSHFHQTLHEFPLCKVNAVLAGKLDLSEKDTENSRSEETA 281
Query: 296 EQKSSSVSMEDISLSSENGVS----DLILEANHSPVNKISKSHKVGEKASQETLKLWKEN 351
+K+S +ISL + + D + E + K+ K + AS L L N
Sbjct: 282 AEKNSEAQSMEISLDPQEQMRRDERDRLRE-QRAQEKKVKMEEKRKKLASAAAL-LQDRN 339
Query: 352 GFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQIS 411
+ +V+A P + L+ ++ S PF +Y QY +PL C + L+ + I L+++
Sbjct: 340 --ADGLVIASRFHPCPVLMGLIKFVAPSRPFVVYCQYREPLIECYNKLREQGGVINLRLT 397
Query: 412 EPWLREYQVLPSRTHPCMQMSGCGGYILSGT 442
+ WLR YQVLP+RTHP + MSG GGY+LSGT
Sbjct: 398 DSWLRHYQVLPNRTHPVLLMSGGGGYLLSGT 428
>UNIPROTKB|F1NF40 [details] [associations]
symbol:TRMT6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] InterPro:IPR007316 InterPro:IPR017423 Pfam:PF04189
PIRSF:PIRSF038170 GO:GO:0006446 GO:GO:0003743 KO:K03256
EMBL:AADN02012185 CTD:51605 GeneTree:ENSGT00390000008327
OMA:LLEFVAP PANTHER:PTHR12945 EMBL:AADN02012186 IPI:IPI00820525
RefSeq:NP_001026212.2 UniGene:Gga.22505 Ensembl:ENSGALT00000014935
GeneID:421313 KEGG:gga:421313 NextBio:20824097 ArrayExpress:F1NF40
Uniprot:F1NF40
Length = 484
Score = 260 (96.6 bits), Expect = 6.9e-40, Sum P(2) = 6.9e-40
Identities = 65/183 (35%), Positives = 99/183 (54%)
Query: 53 LQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQ 112
L IG +G+ F+V + +G NL E + KE +G DNR IVDD K+Q
Sbjct: 45 LDNAIGHVYGTTFEVTS--DG-NLQPKRQVEETTTETKE----AGT--DNRNIVDDGKSQ 95
Query: 113 CLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPF 172
L+ +DI ++ +G G+EIV+ LI NS TF KT F+Q+ +P
Sbjct: 96 KLTHDDIKALKDKGIKGQEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAVITIVKPS 155
Query: 173 ARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGT 232
R + Y+ + P +I LR D L+ +L++GNV A + ++V++ GL+ GAV ER+GG
Sbjct: 156 TRILSTMYYAREPGKIIHLRYDTLAQMLTLGNVRAGNKMIVMETCAGLVLGAVMERMGGY 215
Query: 233 GYV 235
G +
Sbjct: 216 GSI 218
Score = 227 (85.0 bits), Expect = 6.9e-40, Sum P(2) = 6.9e-40
Identities = 57/160 (35%), Positives = 84/160 (52%)
Query: 292 IQSNEQKSSSVSMEDISLSSENGVSDLILE-----ANHSPVNKIS---KSHKVGEKASQ- 342
+Q E++SS+ + +I+ + E D+ E N NK + K K E+ +
Sbjct: 291 VQGTEEESSAETAMEINQTEEQETMDINAEDAEFKENKERENKENVREKQRKQWERTKKL 350
Query: 343 -ETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQV 401
E L +E ++V A + P + LL ++ S PF +Y QY +PL C L+
Sbjct: 351 TEAAALLREKNADGLLV-ASKFHPTPLLLSLLEFVAPSRPFVVYCQYKEPLLECYTKLRE 409
Query: 402 RKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSG 441
R + L++SE WLR YQVLP R+HP + MSG GGYILSG
Sbjct: 410 RGGVVNLKLSETWLRSYQVLPDRSHPKLTMSGGGGYILSG 449
>RGD|1308877 [details] [associations]
symbol:Trmt6 "tRNA methyltransferase 6 homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006446 "regulation
of translational initiation" evidence=IEA] InterPro:IPR007316
InterPro:IPR017423 Pfam:PF04189 PIRSF:PIRSF038170 RGD:1308877
GO:GO:0006446 GO:GO:0003743 EMBL:CH473949 KO:K03256 CTD:51605
GeneTree:ENSGT00390000008327 OMA:LLEFVAP OrthoDB:EOG4P2Q2K
PANTHER:PTHR12945 IPI:IPI00364210 RefSeq:NP_001101249.1
UniGene:Rn.8742 Ensembl:ENSRNOT00000028893 GeneID:311441
KEGG:rno:311441 UCSC:RGD:1308877 NextBio:663637 Uniprot:D3ZVK3
Length = 495
Score = 272 (100.8 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 66/190 (34%), Positives = 101/190 (53%)
Query: 53 LQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQ 112
L IG +GS F+V +G G R E+ E ++A G DNR IVDD K+Q
Sbjct: 55 LDNAIGHSYGSTFEVSSG--GSLQLR--KKLEEPTSETKEA---GT--DNRNIVDDGKSQ 105
Query: 113 CLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPF 172
L+ +DI ++ +G GEEIV+ LI NS TF KT F+Q+ +P
Sbjct: 106 KLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITILKPS 165
Query: 173 ARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGT 232
R + Y+ + P +I +R D L+ +L++GN+ A + ++V++ GL+ GA+ ER+GG
Sbjct: 166 TRILSIMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCSGLVLGAMMERMGGF 225
Query: 233 GYVCNTCIGD 242
G + GD
Sbjct: 226 GSIIQLYPGD 235
Score = 210 (79.0 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 70/243 (28%), Positives = 102/243 (41%)
Query: 213 VVDMAGGLLTGAVAERLGGTGYV--CNTCIGDSLYPMDIVR-IFNFSNEICKSIVRAXXX 269
+++ GG G++ + G G V C G +P + + F KS++
Sbjct: 218 MMERMGGF--GSIIQLYPGDGPVRAATACFG---FPKSFLSGLHEFPLNKVKSLLNGTFS 272
Query: 270 XXXXXXXXXXXXXQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHS--PV 327
ES +E + EQ + ++E D++ S P
Sbjct: 273 AEMLSSEPKDSTPVKESNGELEKEIAEQADKDSIADGPESNAEQNPVDIVPGDPESKEPK 332
Query: 328 NKISKSHKVGEKASQ---------ETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSY 378
K SK + EK + E L E +IV A P + LL ++
Sbjct: 333 EKGSKRDYIQEKQRRQEEQRKRHMEAAALLGERNADGLIV-ASRFHPTPLLLSLLDFVAP 391
Query: 379 SAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYI 438
S PF +Y QY +PL C L+ R I L++SE WLR YQVLP R+HP + MSG GGY+
Sbjct: 392 SRPFVVYCQYKEPLLECYTKLRERGGVINLRLSETWLRNYQVLPDRSHPKLLMSGGGGYL 451
Query: 439 LSG 441
LSG
Sbjct: 452 LSG 454
>UNIPROTKB|Q2T9V5 [details] [associations]
symbol:TRMT6 "tRNA (adenine(58)-N(1))-methyltransferase
non-catalytic subunit TRM6" species:9913 "Bos taurus" [GO:0005634
"nucleus" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
InterPro:IPR007316 InterPro:IPR017423 Pfam:PF04189
PIRSF:PIRSF038170 GO:GO:0005634 GO:GO:0006446 GO:GO:0008033
GO:GO:0003743 KO:K03256 EMBL:BC111249 IPI:IPI00697095
RefSeq:NP_001033129.1 UniGene:Bt.5857 ProteinModelPortal:Q2T9V5
PRIDE:Q2T9V5 Ensembl:ENSBTAT00000001734 GeneID:505816
KEGG:bta:505816 CTD:51605 eggNOG:NOG254601
GeneTree:ENSGT00390000008327 HOGENOM:HOG000232007
HOVERGEN:HBG061231 InParanoid:Q2T9V5 OMA:LLEFVAP OrthoDB:EOG4P2Q2K
NextBio:20867320 PANTHER:PTHR12945 Uniprot:Q2T9V5
Length = 497
Score = 272 (100.8 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 88/303 (29%), Positives = 139/303 (45%)
Query: 53 LQPLIGCPFGSLFQVDNGKE-GPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKA 111
L +IG +G+ F+V NG P + P++E KE +G DNR I+DD K+
Sbjct: 54 LDNIIGHSYGTTFEVTNGGSLQPKKKKEEPTSET----KE----AGT--DNRNIIDDGKS 103
Query: 112 QCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRP 171
Q L+ +DI ++ +G GEEIV+ LI NS TF KT F+Q+ +P
Sbjct: 104 QKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAMITVVKP 163
Query: 172 FARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
R + Y+ + P +I +R D L+ +L++GN+ A + ++V++ GL+ GA+ ER+GG
Sbjct: 164 STRILSVMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGG 223
Query: 232 TGYVCNTCIGDSLYPMDIVRI-FNFSNEICKSIVRAXXXXXXXXXXXXXXXXQLESACNM 290
G + G P+ F F + L S
Sbjct: 224 FGSIIQLYPGGG--PVRAATACFGFPKSFLSGLYEFPLNKVDSLLNGTFSAEMLSSEPK- 280
Query: 291 EIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQET-LKLWK 349
+I S E+ + ++ + S EN D I EA S N + ++ E SQ+ K K
Sbjct: 281 DIASVEESNGTLEEKQTS-EQEN--EDSIAEAPES--NHPEEQERM-EIVSQDPDYKEPK 334
Query: 350 ENG 352
E+G
Sbjct: 335 ESG 337
Score = 207 (77.9 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 46/108 (42%), Positives = 59/108 (54%)
Query: 338 EKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMH 397
+K E L E +IV A P + LL ++ S PF +Y QY +PL C
Sbjct: 354 KKRHLEAAALLSERNADGLIV-ASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYT 412
Query: 398 SLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTRTA 445
L+ R I L++SE WLR YQVLP R+HP + MSG GGY+LSG A
Sbjct: 413 KLRERGGVINLRLSETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVA 460
>UNIPROTKB|F1SBM2 [details] [associations]
symbol:TRMT6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR007316 InterPro:IPR017423 Pfam:PF04189
PIRSF:PIRSF038170 GO:GO:0006446 GO:GO:0003743 KO:K03256 CTD:51605
GeneTree:ENSGT00390000008327 OMA:LLEFVAP PANTHER:PTHR12945
EMBL:CU311185 RefSeq:XP_001927431.1 UniGene:Ssc.786
Ensembl:ENSSSCT00000007715 GeneID:100155529 KEGG:ssc:100155529
Uniprot:F1SBM2
Length = 497
Score = 268 (99.4 bits), Expect = 4.4e-39, Sum P(2) = 4.4e-39
Identities = 61/183 (33%), Positives = 100/183 (54%)
Query: 53 LQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQ 112
L +IG +G+ F+V NG + + E+ E ++A G DNR I+DD K+Q
Sbjct: 54 LDNVIGHNYGTTFEVTNG----GILQPKKKKEEPTSETKEA---GT--DNRNIIDDGKSQ 104
Query: 113 CLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPF 172
L+ +DI ++ +G GEEIV+ LI NS TF KT F+Q+ +P
Sbjct: 105 KLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAMITIVKPS 164
Query: 173 ARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGT 232
R + Y+ + P +I +R D L+ +L++GN+ A + ++V++ GL+ GA+ ER+GG
Sbjct: 165 TRILSVMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGF 224
Query: 233 GYV 235
G +
Sbjct: 225 GSI 227
Score = 210 (79.0 bits), Expect = 4.4e-39, Sum P(2) = 4.4e-39
Identities = 74/250 (29%), Positives = 110/250 (44%)
Query: 213 VVDMAGGLLTGAVAERLGGTGYV--CNTCIGDSLYPMDIVR-IFNFSNEICKSIVRAXXX 269
+++ GG G++ + G G V C G +P + ++ F S++
Sbjct: 217 MMERMGGF--GSIIQLYPGGGPVRAATACFG---FPKSFLSGLYEFPLNKVDSLLNGTFS 271
Query: 270 XXXXXXXXXXXXXQLESACNMEI-QSNEQKSS-SVS-MEDISLSSENGVSDLILEANH-- 324
ES +E Q +EQ++ SV+ ++ S E ++I +
Sbjct: 272 AEMLSSEPKDSTSAEESNGTLEEKQPSEQENEDSVAETQESSHPEEQETMEMISQDPEYK 331
Query: 325 SPVNKISKSHKVGEKAS-QETLK--------LWKENGFSSMIVVAPELDPWSFVKDLLPL 375
P + SK + EK QE K L E +IV A P + LL
Sbjct: 332 EPKERGSKKDYIQEKQRRQEEQKKRHLEAAALLSEKNADGLIV-ASRFHPTPLLLSLLDF 390
Query: 376 LSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCG 435
++ S PF +Y QY +PL C L+ R I L++SE WLR YQVLP R+HP + MSG G
Sbjct: 391 VAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLSETWLRNYQVLPDRSHPKLLMSGGG 450
Query: 436 GYILSGTRTA 445
GY+LSG A
Sbjct: 451 GYLLSGFTVA 460
>UNIPROTKB|F1P960 [details] [associations]
symbol:TRMT6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006446 "regulation of translational
initiation" evidence=IEA] [GO:0003743 "translation initiation
factor activity" evidence=IEA] InterPro:IPR007316
InterPro:IPR017423 Pfam:PF04189 PIRSF:PIRSF038170 GO:GO:0006446
GO:GO:0003743 KO:K03256 CTD:51605 GeneTree:ENSGT00390000008327
OMA:LLEFVAP PANTHER:PTHR12945 EMBL:AAEX03013808 RefSeq:XP_542900.3
Ensembl:ENSCAFT00000009643 GeneID:485777 KEGG:cfa:485777
Uniprot:F1P960
Length = 497
Score = 270 (100.1 bits), Expect = 6.4e-39, Sum P(2) = 6.4e-39
Identities = 64/184 (34%), Positives = 101/184 (54%)
Query: 53 LQPLIGCPFGSLFQVDNGKE-GPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKA 111
L +IG +G+ F+V NG P + P++E KE +G DNR I+DD K+
Sbjct: 54 LDNIIGHSYGTTFEVTNGGSLQPKKKKEEPTSET----KE----AGT--DNRNIIDDGKS 103
Query: 112 QCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRP 171
Q L+ +DI ++ +G GEEIV+ LI NS TF KT F+Q+ +P
Sbjct: 104 QKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKP 163
Query: 172 FARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
R + Y+ + P +I +R D L+ +L++GNV A + ++V++ GL+ GA+ ER+GG
Sbjct: 164 STRILSIMYYAREPGKINHMRYDTLAQMLTLGNVRAGNKMIVMETCAGLVLGAMMERMGG 223
Query: 232 TGYV 235
G +
Sbjct: 224 FGSI 227
Score = 206 (77.6 bits), Expect = 6.4e-39, Sum P(2) = 6.4e-39
Identities = 46/107 (42%), Positives = 58/107 (54%)
Query: 339 KASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHS 398
K E L E +IV A P + LL ++ S PF +Y QY +PL C
Sbjct: 355 KRHLEAAALLSERNADGLIV-ASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTK 413
Query: 399 LQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTRTA 445
L+ R I L++SE WLR YQVLP R+HP + MSG GGY+LSG A
Sbjct: 414 LRERGGVINLRLSETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVA 460
>UNIPROTKB|Q9UJA5 [details] [associations]
symbol:TRMT6 "tRNA (adenine(58)-N(1))-methyltransferase
non-catalytic subunit TRM6" species:9606 "Homo sapiens" [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0006446
"regulation of translational initiation" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007316 InterPro:IPR017423 Pfam:PF04189
PIRSF:PIRSF038170 GO:GO:0005634 GO:GO:0006446 GO:GO:0008033
GO:GO:0003743 EMBL:AL035461 KO:K03256 CTD:51605 eggNOG:NOG254601
HOGENOM:HOG000232007 HOVERGEN:HBG061231 OMA:LLEFVAP
OrthoDB:EOG4P2Q2K PANTHER:PTHR12945 EMBL:AB032979 EMBL:AF132943
EMBL:AK000613 EMBL:BC001262 IPI:IPI00099311 IPI:IPI00155747
IPI:IPI00885131 RefSeq:NP_057023.2 UniGene:Hs.128791
ProteinModelPortal:Q9UJA5 IntAct:Q9UJA5 STRING:Q9UJA5
PhosphoSite:Q9UJA5 DMDM:74753354 PaxDb:Q9UJA5 PeptideAtlas:Q9UJA5
PRIDE:Q9UJA5 DNASU:51605 Ensembl:ENST00000203001 GeneID:51605
KEGG:hsa:51605 UCSC:uc002wmh.1 GeneCards:GC20M005917
HGNC:HGNC:20900 HPA:HPA047032 neXtProt:NX_Q9UJA5
PharmGKB:PA162407063 InParanoid:Q9UJA5 PhylomeDB:Q9UJA5
GenomeRNAi:51605 NextBio:55494 ArrayExpress:Q9UJA5 Bgee:Q9UJA5
CleanEx:HS_TRMT6 Genevestigator:Q9UJA5 GermOnline:ENSG00000089195
Uniprot:Q9UJA5
Length = 497
Score = 266 (98.7 bits), Expect = 8.2e-39, Sum P(2) = 8.2e-39
Identities = 64/184 (34%), Positives = 100/184 (54%)
Query: 53 LQPLIGCPFGSLFQVDNGKE-GPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKA 111
L +IG +G+ F+V +G P R P+ E KE +G DNR IVDD K+
Sbjct: 54 LDNVIGHSYGTAFEVTSGGSLQPKKKREEPTAET----KE----AGT--DNRNIVDDGKS 103
Query: 112 QCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRP 171
Q L+ +DI ++ +G GEEIV+ LI NS TF KT F+Q+ +P
Sbjct: 104 QKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKP 163
Query: 172 FARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
R + Y+ + P +I +R D L+ +L++GN+ A + ++V++ GL+ GA+ ER+GG
Sbjct: 164 STRILSIMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGG 223
Query: 232 TGYV 235
G +
Sbjct: 224 FGSI 227
Score = 210 (79.0 bits), Expect = 8.2e-39, Sum P(2) = 8.2e-39
Identities = 54/154 (35%), Positives = 78/154 (50%)
Query: 293 QSNEQKSSSVSMEDISLSSEN-GVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKEN 351
+SN + +ME IS E+ G + + ++ + + + + K E L E
Sbjct: 311 ESNHPEDQE-TMETISQDPEHKGPKERGSKKDY--IQEKQRRQEEQRKRHLEAAALLSER 367
Query: 352 GFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQIS 411
+IV A P + LL ++ S PF +Y QY +PL C L+ R I L++S
Sbjct: 368 NADGLIV-ASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLS 426
Query: 412 EPWLREYQVLPSRTHPCMQMSGCGGYILSGTRTA 445
E WLR YQVLP R+HP + MSG GGY+LSG A
Sbjct: 427 ETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVA 460
>MGI|MGI:1914176 [details] [associations]
symbol:Trmt6 "tRNA methyltransferase 6" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
InterPro:IPR007316 InterPro:IPR017423 Pfam:PF04189
PIRSF:PIRSF038170 MGI:MGI:1914176 GO:GO:0005634 GO:GO:0006446
GO:GO:0008033 GO:GO:0003743 KO:K03256 CTD:51605 eggNOG:NOG254601
GeneTree:ENSGT00390000008327 HOGENOM:HOG000232007
HOVERGEN:HBG061231 OMA:LLEFVAP OrthoDB:EOG4P2Q2K PANTHER:PTHR12945
EMBL:AK129300 EMBL:AK014359 EMBL:AK165976 EMBL:AK167222
EMBL:AK028755 EMBL:BC049083 EMBL:BC052648 IPI:IPI00453830
IPI:IPI00458059 IPI:IPI00752927 RefSeq:NP_780322.2 UniGene:Mm.34199
ProteinModelPortal:Q8CE96 PhosphoSite:Q8CE96 PaxDb:Q8CE96
PRIDE:Q8CE96 Ensembl:ENSMUST00000039554 GeneID:66926 KEGG:mmu:66926
UCSC:uc008mnh.1 NextBio:323037 Bgee:Q8CE96 CleanEx:MM_TRMT6
Genevestigator:Q8CE96 GermOnline:ENSMUSG00000037376 Uniprot:Q8CE96
Length = 497
Score = 270 (100.1 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 66/190 (34%), Positives = 100/190 (52%)
Query: 53 LQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQ 112
L IG +GS F V +G G R E+ E ++A G DNR IVDD K+Q
Sbjct: 55 LDNAIGHSYGSAFDVSSG--GSLQLR--KKLEEPASETKEA---GT--DNRNIVDDGKSQ 105
Query: 113 CLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPF 172
L+ +DI ++ +G GEEIV+ LI NS TF KT F+Q+ +P
Sbjct: 106 KLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIVTILKPS 165
Query: 173 ARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGT 232
R + Y+ + P +I +R D L+ +L++GN+ A + ++V++ GL+ GA+ ER+GG
Sbjct: 166 TRILSIMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCSGLVLGAMMERMGGF 225
Query: 233 GYVCNTCIGD 242
G + GD
Sbjct: 226 GSIIQLYPGD 235
Score = 204 (76.9 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 357 IVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLR 416
++VA P + LL ++ S PF +Y QY +PL C L+ R I L++SE WLR
Sbjct: 372 LIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLSETWLR 431
Query: 417 EYQVLPSRTHPCMQMSGCGGYILSG 441
YQVLP R+HP + MSG GGY+LSG
Sbjct: 432 NYQVLPDRSHPKLLMSGGGGYLLSG 456
>FB|FBgn0031832 [details] [associations]
symbol:CG9596 species:7227 "Drosophila melanogaster"
[GO:0006446 "regulation of translational initiation" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR007316
InterPro:IPR017423 Pfam:PF04189 PIRSF:PIRSF038170 EMBL:AE014134
GO:GO:0006446 GO:GO:0046331 GO:GO:0003743 KO:K03256
eggNOG:NOG254601 GeneTree:ENSGT00390000008327 OMA:LLEFVAP
PANTHER:PTHR12945 EMBL:AY119050 RefSeq:NP_995638.1 UniGene:Dm.13491
IntAct:Q8MS69 STRING:Q8MS69 EnsemblMetazoa:FBtr0079332 GeneID:33920
KEGG:dme:Dmel_CG9596 UCSC:CG9596-RB FlyBase:FBgn0031832
InParanoid:Q8MS69 OrthoDB:EOG4M37R6 GenomeRNAi:33920 NextBio:785923
Uniprot:Q8MS69
Length = 444
Score = 210 (79.0 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 57/200 (28%), Positives = 97/200 (48%)
Query: 42 STLKIGNKNCSLQPLIGCPFGSLFQV-----DNGKEGPNLSRVIP-STEDDVQE-KEDAQ 94
+T +G + L+ L+ P+GS F++ GK G + +E +++ +E
Sbjct: 34 TTATLGKETLELKSLLDQPYGSTFKMCVKETKPGKRGAQRQHTLELCSETELRSTREVLG 93
Query: 95 ISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXX 154
IS DNR I DD +AQ L EDI ++R + +I+E L+ NS TF +T +SQE
Sbjct: 94 ISSSGADNRDIRDDGEAQTLKPEDIAQLREECNDSSKIIEKLVENSKTFHNRTEYSQEKY 153
Query: 155 XXXXXXXXXXXXXXRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVV 214
R+P R + + +++++ ++ +RVD LS ++S V L+
Sbjct: 154 LLKKEKKYFEFVQIRQPTIRLMLDIFYRQDSEKVMGIRVDTLSQIISYSGVCGFGSYLLY 213
Query: 215 DMA-GGLLTGAVAERLG-GT 232
+ GLL A+ +G GT
Sbjct: 214 ESGTNGLLPAAMLNSIGAGT 233
Score = 163 (62.4 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 34/89 (38%), Positives = 51/89 (57%)
Query: 353 FSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISE 412
F S++V A E P + ++ LLPL+ S P ++ + L L+ GL ++
Sbjct: 353 FDSLVVAAKE-HPSNILQALLPLVKPSRPVVVFSTCKELLQETFMELKTTGKVTGLHLTS 411
Query: 413 PWLREYQVLPSRTHPCMQMSGCGGYILSG 441
WLR YQ+LP+RTHP + MSG GY+L+G
Sbjct: 412 NWLRTYQILPNRTHPEVNMSGNSGYLLTG 440
>WB|WBGene00014120 [details] [associations]
symbol:ZK858.7 species:6239 "Caenorhabditis elegans"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006446
"regulation of translational initiation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR007316 InterPro:IPR017423
Pfam:PF04189 PIRSF:PIRSF038170 GO:GO:0009792 GO:GO:0006898
GO:GO:0040010 GO:GO:0006446 GO:GO:0010171 GO:GO:0000003
GO:GO:0003743 EMBL:Z79759 eggNOG:NOG254601
GeneTree:ENSGT00390000008327 PANTHER:PTHR12945 OMA:QTIPGRM
RefSeq:NP_492452.3 ProteinModelPortal:Q94416 DIP:DIP-25921N
PaxDb:Q94416 EnsemblMetazoa:ZK858.7 GeneID:259389
KEGG:cel:CELE_ZK858.7 UCSC:ZK858.7 CTD:259389 WormBase:ZK858.7
HOGENOM:HOG000019665 NextBio:951764 Uniprot:Q94416
Length = 439
Score = 232 (86.7 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 72/245 (29%), Positives = 115/245 (46%)
Query: 6 VQLDPIRNAQ-LTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSL 64
++ +P +Q L G +++ DG++ R T + I G P G L
Sbjct: 1 METEPAETSQKLIKSGEYLIVQKIDGEQSRIVRFTPKQKILIEKLKFVADSAFGKPHG-L 59
Query: 65 FQVDNGKEGP-NLSRVIPST---EDDVQEKE-DAQI---SGEFRDNRAIV--------DD 108
F+V N + P ++ R+I E V D ++ S D R ++ +
Sbjct: 60 FEVSNNQCLPMSVDRLIEELQLQEASVATSSIDPEVTEPSEPSLDPRVVIAPSALKLEPE 119
Query: 109 NKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXX 168
K Q L + + EM++QG +G+E+V L+ SA+F+ +T FSQ
Sbjct: 120 QKRQKLEMDAVLEMKKQGVSGQEMVAKLVEGSASFQTRTVFSQSKYIKRKAKKHSDRVLI 179
Query: 169 RRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228
RP R + +AY+ K+P R+ LR D L+L+L M + +V+V + GL+T AV ER
Sbjct: 180 LRPTIRLLAKAYYLKDPDRLAMLRADQLALILQMAGLHHGKNVVVFEQTLGLITSAVIER 239
Query: 229 LGGTG 233
LGGTG
Sbjct: 240 LGGTG 244
Score = 122 (48.0 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 345 LKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKM 404
+ L + S+I+ + +DP S ++ L P L+ S IY + L + L R+
Sbjct: 338 IDLINDEQIHSLIIGSRTVDPISVLELLYPKLAPSGTIVIYSPHQNILISAYDWLSKRQ- 396
Query: 405 AIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTR 443
I L +++ R QVLP RTHP M GG+IL+G +
Sbjct: 397 TINLVLTDQMCRVMQVLPDRTHPLMAQHVAGGHILTGIK 435
>CGD|CAL0000045 [details] [associations]
symbol:orf19.500 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0031515 "tRNA (m1A) methyltransferase
complex" evidence=IEA] [GO:0030488 "tRNA methylation" evidence=IEA]
[GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity"
evidence=IEA] InterPro:IPR007316 InterPro:IPR017423 Pfam:PF04189
PIRSF:PIRSF038170 CGD:CAL0000045 GO:GO:0005634 GO:GO:0006446
GO:GO:0008033 GO:GO:0003743 EMBL:AACQ01000055 EMBL:AACQ01000054
KO:K03256 eggNOG:NOG254601 PANTHER:PTHR12945 RefSeq:XP_717363.1
RefSeq:XP_717452.1 STRING:Q5A6Q4 GeneID:3640911 GeneID:3640976
KEGG:cal:CaO19.500 KEGG:cal:CaO19.8130 Uniprot:Q5A6Q4
Length = 453
Score = 202 (76.2 bits), Expect = 4.0e-25, Sum P(2) = 4.0e-25
Identities = 71/259 (27%), Positives = 135/259 (52%)
Query: 20 GCSVLLDI-NDGDRLVFARLTSGSTL-KIGNKNCSLQPLIGCPFGSLFQV-DNGKEGP-- 74
G VL+ + ++G ++V + T L K G+ S ++G P G+ F++ ++ K P
Sbjct: 14 GQHVLIRLPSEGLKIVHLQDTGIIGLGKFGSFEVS--NILGYPLGTSFEIIEDHKVKPIK 71
Query: 75 NLSRV-IPSTEDDVQEKEDAQI-SGEFRDNRAIVD-DNKAQCLSGEDIDEMRRQGAT--- 128
++S + + +++ VQ +E ++ S +N+ I++ +K Q LS +DIDE+++ GA+
Sbjct: 72 SISTLDLTDSDETVQRQELTKMFSDSAENNQNIINIGSKIQKLSKDDIDELKKSGASSNV 131
Query: 129 GEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPARI 188
G+ I+E +IA F+KKT FSQ+ + + Y +K+ R+
Sbjct: 132 GQMIIEKMIAGHEGFDKKTIFSQQKYLKRKQQKFLRRFTVDYLGGSELLQYYIEKDLNRV 191
Query: 189 GFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMD 248
L V+ L L+L+ NV L++D GG+LT A+ ER+ G + + I ++ +
Sbjct: 192 LDLSVETLGLMLTYSNVRPGGKYLIIDETGGVLTYAMMERMNCEGTIVS--IHENEHANL 249
Query: 249 I-VRIFNFSNEICKSIVRA 266
I +R ++ NE+ V++
Sbjct: 250 IALRYSDYGNELETKTVKS 268
Score = 153 (58.9 bits), Expect = 4.0e-25, Sum P(2) = 4.0e-25
Identities = 41/118 (34%), Positives = 62/118 (52%)
Query: 328 NKISKSHKVGEKASQ--ETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIY 385
NK S+ K ++A Q E ++L +E F + I V+ L+ ++ +LP + S P +Y
Sbjct: 297 NK-SQYKKRRDRALQINEVIQLVEEGNFDAFISVST-LNMSEVLEYVLPKIGGSRPIVVY 354
Query: 386 HQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTR 443
+Q+ + L +L K + I E +R YQ +P R HP M G GGYIL GTR
Sbjct: 355 NQFKESLLEVQQALSGDKRVLAPSIYETRVRPYQTIPGRMHPVMTNRGGGGYILWGTR 412
>UNIPROTKB|B4DUV6 [details] [associations]
symbol:TRMT6 "tRNA (adenine(58)-N(1))-methyltransferase
non-catalytic subunit TRM6" species:9606 "Homo sapiens" [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] InterPro:IPR007316
Pfam:PF04189 GO:GO:0003743 GO:GO:0008168 EMBL:AL035461
HOVERGEN:HBG061231 PANTHER:PTHR12945 UniGene:Hs.128791
HGNC:HGNC:20900 EMBL:AK300812 IPI:IPI01013230 STRING:B4DUV6
Ensembl:ENST00000453074 UCSC:uc010gbn.1 Uniprot:B4DUV6
Length = 327
Score = 210 (79.0 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 54/154 (35%), Positives = 78/154 (50%)
Query: 293 QSNEQKSSSVSMEDISLSSEN-GVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKEN 351
+SN + +ME IS E+ G + + ++ + + + + K E L E
Sbjct: 141 ESNHPEDQE-TMETISQDPEHKGPKERGSKKDY--IQEKQRRQEEQRKRHLEAAALLSER 197
Query: 352 GFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQIS 411
+IV A P + LL ++ S PF +Y QY +PL C L+ R I L++S
Sbjct: 198 NADGLIV-ASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLS 256
Query: 412 EPWLREYQVLPSRTHPCMQMSGCGGYILSGTRTA 445
E WLR YQVLP R+HP + MSG GGY+LSG A
Sbjct: 257 ETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVA 290
Score = 122 (48.0 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 20/56 (35%), Positives = 38/56 (67%)
Query: 180 YFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYV 235
Y+ + P +I +R D L+ +L++GN+ A + ++V++ GL+ GA+ ER+GG G +
Sbjct: 2 YYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSI 57
>POMBASE|SPBC800.08 [details] [associations]
symbol:gcd10 "tRNA (m1A) methyltransferase, translation
initiation factor eIF-3 gamma subunit Gcd10 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000049 "tRNA binding"
evidence=ISO] [GO:0002183 "cytoplasmic translational initiation"
evidence=NAS] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006413
"translational initiation" evidence=ISO] [GO:0006446 "regulation of
translational initiation" evidence=IEA] [GO:0030488 "tRNA
methylation" evidence=ISO] [GO:0031515 "tRNA (m1A)
methyltransferase complex" evidence=ISO] [GO:0016429 "tRNA
(adenine-N1-)-methyltransferase activity" evidence=ISO]
InterPro:IPR007316 InterPro:IPR017423 Pfam:PF04189
PIRSF:PIRSF038170 PomBase:SPBC800.08 GO:GO:0005634 GO:GO:0006446
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003743 GO:GO:0000049
GO:GO:0002183 KO:K03256 GO:GO:0030488 GO:GO:0031515
eggNOG:NOG254601 PANTHER:PTHR12945 RefSeq:NP_595109.1
ProteinModelPortal:Q9HGL4 STRING:Q9HGL4 EnsemblFungi:SPBC800.08.1
GeneID:2540699 KEGG:spo:SPBC800.08 OMA:QTIPGRM OrthoDB:EOG4D82F7
NextBio:20801822 Uniprot:Q9HGL4
Length = 462
Score = 188 (71.2 bits), Expect = 4.5e-22, Sum P(3) = 4.5e-22
Identities = 63/226 (27%), Positives = 102/226 (45%)
Query: 11 IRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSL-QPLIGCPFGSLFQVDN 69
+R+A E SV + + D + F L +T+ +G L L G F F++
Sbjct: 2 LRHASTISENSSVFIKL-PSDNVRFVTLKPNNTIHLGKFGSFLADDLFGKHFDETFEIYQ 60
Query: 70 GKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQ---- 125
P RV+ + E VQ E+ E + N+ + D Q ++ E+IDE+R
Sbjct: 61 ----PKKIRVLKTRE--VQYIEE-----EKKTNQELNDCRGNQLMTQEEIDELRANIKAG 109
Query: 126 GATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNP 185
G EE ++ L +S TFE+KT F+QE RP + + +P
Sbjct: 110 GLRAEEAIKQLTNSSKTFEQKTLFAQEKYVTRKGEKYLQRFQVLRPCVEVVANYMIEHDP 169
Query: 186 ARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
+I L + +SL+L++GNV LVVD G + G++ +R+ G
Sbjct: 170 YKILDLTAECISLMLTLGNVKPGGRYLVVDETGCMFLGSLIDRVAG 215
Score = 101 (40.6 bits), Expect = 4.5e-22, Sum P(3) = 4.5e-22
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 402 RKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTRTATNASS 450
++ I L I E R YQVLP RTHP M + G G++LSG + T+ S+
Sbjct: 389 KEKVIMLDIHEIRTRPYQVLPERTHPFMTVRGDMGFVLSGIKVLTSDSN 437
Score = 76 (31.8 bits), Expect = 4.5e-22, Sum P(3) = 4.5e-22
Identities = 26/109 (23%), Positives = 48/109 (44%)
Query: 291 EIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKE 350
++ + + S S+EDI S N ++ H K ++ K + T+ ++
Sbjct: 258 QVTNPTETLSEYSVEDIPESELNE-----MKLRH---RKRYETKKATFNRLKNTIDDFES 309
Query: 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSL 399
+ ++ +++ P S ++ LLP L S PF +Y Y Q L H L
Sbjct: 310 GNYDALFILSIHT-PMSVLQHLLPKLGISRPFMVYSTYQQVLVETYHQL 357
>SGD|S000005006 [details] [associations]
symbol:GCD10 "Subunit of tRNA (1-methyladenosine)
methyltransferase with Gcd14p" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0031515
"tRNA (m1A) methyltransferase complex" evidence=IDA;IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006446 "regulation of translational
initiation" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0030488 "tRNA methylation" evidence=IDA]
[GO:0016429 "tRNA (adenine-N1-)-methyltransferase activity"
evidence=IDA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR007316 InterPro:IPR017423 Pfam:PF04189
PIRSF:PIRSF038170 SGD:S000005006 GO:GO:0005634 GO:GO:0006446
EMBL:BK006947 GO:GO:0003743 EMBL:U12141 RefSeq:NP_014337.3
GeneID:855663 KEGG:sce:YNL062C KO:K03256 GO:GO:0030488
GO:GO:0031515 eggNOG:NOG254601 GeneTree:ENSGT00390000008327
PANTHER:PTHR12945 OMA:QTIPGRM OrthoDB:EOG4D82F7 EMBL:X83511
EMBL:Z71338 PIR:S51669 RefSeq:NP_014344.3 ProteinModelPortal:P41814
DIP:DIP-3842N IntAct:P41814 MINT:MINT-533615 STRING:P41814
PaxDb:P41814 PeptideAtlas:P41814 EnsemblFungi:YNL062C GeneID:855673
KEGG:sce:YNL054W CYGD:YNL062c HOGENOM:HOG000248840
BioCyc:MetaCyc:MONOMER-16692 NextBio:979932 Genevestigator:P41814
GermOnline:YNL062C Uniprot:P41814
Length = 478
Score = 126 (49.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 39/165 (23%), Positives = 77/165 (46%)
Query: 68 DNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGA 127
D+G+ P LS E V E + I + + +KAQ L+ E+I++M+++
Sbjct: 98 DDGQSEPPLS----IKEKSVS-LELSSIDSSATNQNLVNMGSKAQELTVEEIEKMKQESL 152
Query: 128 TGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPA- 186
+ +EI++ +I + +F KT +SQE + ++ + K
Sbjct: 153 SSKEIIDKIIKSHKSFHNKTVYSQEKYVNRKKQKFAKYFTVEYLSSSNLLQFLIDKGDIQ 212
Query: 187 RIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
R+ + + + +LL++ N+ + + L +D GGLL + ER+ G
Sbjct: 213 RVLDMSQESMGMLLNLANIQSEGNYLCMDETGGLLVYFLLERMFG 257
Score = 95 (38.5 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 357 IVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLR 416
+V+A L + V L + S P Y Q+ + L H+L + I E R
Sbjct: 361 LVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFKETLLELAHTLYSDLRFLAPSILETRCR 420
Query: 417 EYQVLPSRTHPCMQMSGCGGYIL 439
YQ + + HP M M G GGY++
Sbjct: 421 PYQSIRGKLHPLMTMKGGGGYLM 443
>UNIPROTKB|F1NNM7 [details] [associations]
symbol:TRMT6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR007316 Pfam:PF04189 GO:GO:0003743
EMBL:AADN02012185 GeneTree:ENSGT00390000008327 PANTHER:PTHR12945
EMBL:AADN02012186 IPI:IPI00589536 Ensembl:ENSGALT00000031959
ArrayExpress:F1NNM7 Uniprot:F1NNM7
Length = 203
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 180 YFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYV 235
Y+ + P +I LR D L+ +L++GNV A + ++V++ GL+ GAV ER+GG G +
Sbjct: 2 YYAREPGKIIHLRYDTLAQMLTLGNVRAGNKMIVMETCAGLVLGAVMERMGGYGSI 57
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 452 420 0.00083 118 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 617 (66 KB)
Total size of DFA: 256 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.55u 0.11s 33.66t Elapsed: 00:00:01
Total cpu time: 33.55u 0.11s 33.66t Elapsed: 00:00:01
Start: Mon May 20 15:31:48 2013 End: Mon May 20 15:31:49 2013