BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012978
         (452 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
           (Tm0748) From Thermotoga Maritima At 1.65 A Resolution
          Length = 277

 Score = 32.3 bits (72), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 1/88 (1%)

Query: 364 DPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPS 423
           DPW+++      L     FA        +   +  LQ     I +++ E   R Y+ +P 
Sbjct: 191 DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPF-IRIEVWESLFRPYKPVPE 249

Query: 424 RTHPCMQMSGCGGYILSGTRTATNASSQ 451
           R  P  +M     Y++  T+      ++
Sbjct: 250 RLRPVDRMVAHTAYMIFATKVCRREETE 277


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,690,167
Number of Sequences: 62578
Number of extensions: 447186
Number of successful extensions: 922
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 6
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)