BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012978
(452 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54UB1|TRM6_DICDI tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Dictyostelium discoideum GN=trmt6 PE=3 SV=1
Length = 521
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/429 (34%), Positives = 235/429 (54%), Gaps = 19/429 (4%)
Query: 19 EGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSR 78
EG V+LDIN+G++ ++ GS +KIG K + +IG + S FQV N E L R
Sbjct: 37 EGDHVILDINNGEKFSVIKVKLGSKVKIGKKQILINSIIGESYYSSFQVSN--EKNTLER 94
Query: 79 VIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIA 138
+ DD + +++ DNR + +N AQ L+ EDI+EM+++G I++ ++
Sbjct: 95 ITQKEIDD-RLNNLVELNQNDADNRNLDQNNTAQKLTQEDINEMKQKGTDSNTIIKTIVE 153
Query: 139 NSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198
NS +F+ KTSFSQ KY KK KKY+ V + +P +S+ EAY+KK+ +I LR D
Sbjct: 154 NSESFKTKTSFSQIKYLKKKIKKYSTIVKIIKPTLKSLTEAYYKKDSRKICGLRFDSFGQ 213
Query: 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNE 258
LL++GN+ ANS VLVV+ GL+TG++AER+ G G + + IG + IV F F+ +
Sbjct: 214 LLTLGNIRANSQVLVVETCMGLVTGSIAERMNGQGTILSAYIGKG-PSLSIVNNFGFNTD 272
Query: 259 ICKSI--VRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVS 316
+ +I +++ V ++ E + S+ + Q E++ E++ E+G
Sbjct: 273 VLNTIYPFNLNITSVLNKGEDISKLPPTASSGIYDKQVKEKEKEKEKDENVKDEKESG-- 330
Query: 317 DLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLL 376
E + +N + + +++ +KL K+ G S+++V + P + + P L
Sbjct: 331 ----EEAKTIIN------QRNDTSNENIVKLLKDGGVWSLVIVT-KYSPLNILLSCWPYL 379
Query: 377 SYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGG 436
+ S F IY Q+ QPL L +MA+ QISE W+RE+QVLP RTHP M M G G
Sbjct: 380 NSSGSFVIYSQFPQPLMEVHQFLHKNQMAVNQQISEIWMREHQVLPKRTHPMMGMDGASG 439
Query: 437 YILSGTRTA 445
+IL GT+
Sbjct: 440 FILYGTKVT 448
>sp|Q9UJA5|TRM6_HUMAN tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Homo sapiens GN=TRMT6 PE=1 SV=1
Length = 497
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 207/440 (47%), Gaps = 48/440 (10%)
Query: 27 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKE-GPNLS 77
I DGD +V R +++ + L +IG +G+ F+V +G P
Sbjct: 20 IRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGHSYGTAFEVTSGGSLQPKKK 79
Query: 78 RVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALI 137
R P+ E KE DNR IVDD K+Q L+ +DI ++ +G GEEIV+ LI
Sbjct: 80 REEPTAET----KEAGT------DNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLI 129
Query: 138 ANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLS 197
NS TF KT F+Q+KY KK+KKY + + +P R + Y+ + P +I +R D L+
Sbjct: 130 ENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKINHMRYDTLA 189
Query: 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYV------------CNTCIGDSLY 245
+L++GN+ A + ++V++ GL+ GA+ ER+GG G + C G +
Sbjct: 190 QMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAATACFG---F 246
Query: 246 PMDIVR-IFNFSNEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSM 304
P + ++ F S++ + S SE + + ES +E + ++ + SM
Sbjct: 247 PKSFLSGLYEFPLNKVDSLLHGTFSAKMLSSEPKDSALVEESNGTLEEKQASEQENEDSM 306
Query: 305 EDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSSM-------- 356
+ S+ + + + P +K K + QE + +E +
Sbjct: 307 AEAPESNHPEDQETMETISQDPEHKGPKERGSKKDYIQEKQRRQEEQRKRHLEAAALLSE 366
Query: 357 -----IVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQIS 411
++VA P + LL ++ S PF +Y QY +PL C L+ R I L++S
Sbjct: 367 RNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLS 426
Query: 412 EPWLREYQVLPSRTHPCMQM 431
E WLR YQVLP R+HP + M
Sbjct: 427 ETWLRNYQVLPDRSHPKLLM 446
>sp|Q8CE96|TRM6_MOUSE tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Mus musculus GN=Trmt6 PE=1 SV=1
Length = 497
Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 205/438 (46%), Gaps = 45/438 (10%)
Query: 27 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKEGPNLSR 78
I+DGD +V R +++ + L IG +GS F V +G +
Sbjct: 21 IHDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNAIGHSYGSAFDVSSG----GSLQ 76
Query: 79 VIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIA 138
+ E+ E ++A DNR IVDD K+Q L+ +DI ++ +G GEEIV+ LI
Sbjct: 77 LRKKLEEPASETKEAGT-----DNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIE 131
Query: 139 NSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198
NS TF KT F+Q+KY KK+KKY V + +P R + Y+ + P +I +R D L+
Sbjct: 132 NSTTFRDKTEFAQDKYIKKKKKKYEAIVTILKPSTRILSIMYYAREPGKINHMRYDTLAQ 191
Query: 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSL---------YPMDI 249
+L++GN+ A + ++V++ GL+ GA+ ER+GG G + GD +P
Sbjct: 192 MLTLGNIRAGNKMIVMETCSGLVLGAMMERMGGFGSIIQLYPGDGPVRAATACFGFPKSF 251
Query: 250 VR-IFNFSNEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDIS 308
+ ++ F S++ + S SE + + ES N E++ E + +
Sbjct: 252 LSGLYEFPLNKVNSLLNGTFSAEMLSSEPKDSTPVEES--NGELEEKEIAEQADEDNIVD 309
Query: 309 LSSENGVSDLILE------ANHSPVNKISKSHKVGEKASQ---------ETLKLWKENGF 353
+ N +E N P K SK + EK + E L E
Sbjct: 310 AAENNSGEQRPMEIVPGDPENKEPKEKRSKRDYIQEKQRRQEEQRKRHLEAAALLGERNA 369
Query: 354 SSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEP 413
+I VA P + LL ++ S PF +Y QY +PL C L+ R I L++SE
Sbjct: 370 DGLI-VASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLSET 428
Query: 414 WLREYQVLPSRTHPCMQM 431
WLR YQVLP R+HP + M
Sbjct: 429 WLRNYQVLPDRSHPKLLM 446
>sp|Q2T9V5|TRM6_BOVIN tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Bos taurus GN=TRMT6 PE=2 SV=1
Length = 497
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 208/445 (46%), Gaps = 58/445 (13%)
Query: 27 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKE-GPNLS 77
I DGD +V R +++ + L +IG +G+ F+V NG P
Sbjct: 20 IRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNIIGHSYGTTFEVTNGGSLQPKKK 79
Query: 78 RVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALI 137
+ P++E KE DNR I+DD K+Q L+ +DI ++ +G GEEIV+ LI
Sbjct: 80 KEEPTSET----KEAGT------DNRNIIDDGKSQKLTQDDIKALKDKGIKGEEIVQQLI 129
Query: 138 ANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLS 197
NS TF KT F+Q+KY KK+KKY + + +P R + Y+ + P +I +R D L+
Sbjct: 130 ENSTTFRDKTEFAQDKYIKKKKKKYEAMITVVKPSTRILSVMYYAREPGKINHMRYDTLA 189
Query: 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYV------------CNTCIG---- 241
+L++GN+ A + ++V++ GL+ GA+ ER+GG G + C G
Sbjct: 190 QMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAATACFGFPKS 249
Query: 242 --DSLYPMDIVRI-----FNFSNEICKSIVR--ASVSD---VTSQSETSEQ--SDQLESA 287
LY + ++ FS E+ S + ASV + + +TSEQ D + A
Sbjct: 250 FLSGLYEFPLNKVDSLLNGTFSAEMLSSEPKDIASVEESNGTLEEKQTSEQENEDSIAEA 309
Query: 288 CNMEIQSNEQKSSSVSME-DISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLK 346
+++ VS + D E+G ++ + K H E
Sbjct: 310 PESNHPEEQERMEIVSQDPDYKEPKESGSKKDYIQEKQRRQEEQKKRH-------LEAAA 362
Query: 347 LWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAI 406
L E +I VA P + LL ++ S PF +Y QY +PL C L+ R I
Sbjct: 363 LLSERNADGLI-VASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGVI 421
Query: 407 GLQISEPWLREYQVLPSRTHPCMQM 431
L++SE WLR YQVLP R+HP + M
Sbjct: 422 NLRLSETWLRNYQVLPDRSHPKLLM 446
>sp|P0CS06|TRM6_CRYNJ tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Cryptococcus neoformans var. neoformans serotype
D (strain JEC21 / ATCC MYA-565) GN=TRM6 PE=3 SV=1
Length = 560
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/357 (31%), Positives = 162/357 (45%), Gaps = 43/357 (12%)
Query: 92 DAQISGEFRDNRAIVD--DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSF 149
DA I N I D + + LS ++I E+R QG T EEI++A IA F KT F
Sbjct: 188 DAVIDDIVETNEFIEDLSETEKTTLSHDEIAELRAQGCTPEEIIQAQIARHEKFGLKTDF 247
Query: 150 SQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKN---PARIGFLRVDMLSLLLSMGNVA 206
S+EK++ +K+KK+ V +P A SI + N P I LR D LS LL+M NV
Sbjct: 248 SKEKWRRRKEKKFYQTV---QPLAPSIPNVLYHYNLRSPQSILHLRDDTLSQLLTMANVR 304
Query: 207 ANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRA 266
LVVD GGL+T AV ER+G G + DS I++ NFS+ + I
Sbjct: 305 PGGRYLVVDDTGGLITAAVLERMGSEGSILLFNESDSPPAWGILQTMNFSDRELEPIKWL 364
Query: 267 SVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSP 326
+ + + + Q E N + +Q+ + + +++ N ++L L
Sbjct: 365 NWLEAEEEYQKPAPPVQAEPPTNPIKAAAKQRKYAAQVAELN----NTRNELHL------ 414
Query: 327 VNKISKSHKVGEKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYH 386
G+ +I +A L+P S V L P L SAP +Y
Sbjct: 415 ------------------------GGWDGLI-LATTLNPISVVARLTPYLLGSAPIVVYS 449
Query: 387 QYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTR 443
Y Q LA + + + ++E W R YQVLP RTHP M S GGY+ + TR
Sbjct: 450 PYYQVLAELLSWSKKDPNYLNDTLTESWERTYQVLPGRTHPMMTTSATGGYLWNATR 506
>sp|P0CS07|TRM6_CRYNB tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Cryptococcus neoformans var. neoformans serotype
D (strain B-3501A) GN=TRM6 PE=3 SV=1
Length = 560
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/357 (31%), Positives = 162/357 (45%), Gaps = 43/357 (12%)
Query: 92 DAQISGEFRDNRAIVD--DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSF 149
DA I N I D + + LS ++I E+R QG T EEI++A IA F KT F
Sbjct: 188 DAVIDDIVETNEFIEDLSETEKTTLSHDEIAELRAQGCTPEEIIQAQIARHEKFGLKTDF 247
Query: 150 SQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKN---PARIGFLRVDMLSLLLSMGNVA 206
S+EK++ +K+KK+ V +P A SI + N P I LR D LS LL+M NV
Sbjct: 248 SKEKWRRRKEKKFYQTV---QPLAPSIPNVLYHYNLRSPQSILHLRDDTLSQLLTMANVR 304
Query: 207 ANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRA 266
LVVD GGL+T AV ER+G G + DS I++ NFS+ + I
Sbjct: 305 PGGRYLVVDDTGGLITAAVLERMGSEGSILLFNESDSPPAWGILQTMNFSDRELEPIKWL 364
Query: 267 SVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSP 326
+ + + + Q E N + +Q+ + + +++ N ++L L
Sbjct: 365 NWLEAEEEYQKPAPPVQAEPPTNPIKAAAKQRKYAAQVAELN----NTRNELHL------ 414
Query: 327 VNKISKSHKVGEKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYH 386
G+ +I +A L+P S V L P L SAP +Y
Sbjct: 415 ------------------------GGWDGLI-LATTLNPISVVARLTPYLLGSAPIVVYS 449
Query: 387 QYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTR 443
Y Q LA + + + ++E W R YQVLP RTHP M S GGY+ + TR
Sbjct: 450 PYYQVLAELLSWSKKDPNYLNDTLTESWERTYQVLPGRTHPMMTTSATGGYLWNATR 506
>sp|Q6BKK7|TRM6_DEBHA tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TRM6 PE=3 SV=2
Length = 473
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/431 (25%), Positives = 198/431 (45%), Gaps = 66/431 (15%)
Query: 38 LTSGSTLKIGN-KNCSLQPLIGCPFGSLFQV-DNGKEGPNLSRVIPSTEDDVQE------ 89
L G + +G ++ ++G PFG F++ + K P S + + E V
Sbjct: 50 LKPGGIISLGKFGTFAVDGILGYPFGQTFEILEELKVKPIKSMTMQADETSVDNENEELT 109
Query: 90 KED--AQISGEFRDNRAIVD-DNKAQCLSGEDIDEMRRQGAT---GEEIVEALIANSATF 143
K+D +S +N+ I++ +K Q L+ ED+D+++ GAT G+ I+E +IA F
Sbjct: 110 KDDLTKMLSNSSDNNQNIINIGSKIQKLTSEDVDKLKESGATSDIGQRIIEQMIAGHEGF 169
Query: 144 EKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMG 203
+KKT FSQ+KY +KQ+K+ + + + + + Y +K+ R+ + + L LLL+
Sbjct: 170 DKKTLFSQQKYLKRKQQKFLRRFTVEYLGSSQLLQYYIEKDTQRVLDMSEETLGLLLNYA 229
Query: 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFN-----FSNE 258
NV L++D GG++ A+ ER+ G G + + D+ +P I ++ N
Sbjct: 230 NVRPGGKYLLIDETGGIILYAMMERMNGQGTIVSAH--DNEHPNHIALRYSDYPEEMQNR 287
Query: 259 ICKSI-----VRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSEN 313
+ KSI + V ++ T E+ ++++ A + EQ++ ++ N
Sbjct: 288 MVKSINWLQFLEPENEKVEFETATEEEIEEMKHAKRAQYYRREQRAKNI----------N 337
Query: 314 GVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLL 373
V D+++E N F I V+ L+ + + +++
Sbjct: 338 SVIDMVMEGN-----------------------------FDGFISVS-TLNMPTLLPEII 367
Query: 374 PLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSG 433
P + S P IY Q+ + L H + K + I E +R +Q +P R HP M M G
Sbjct: 368 PTIGGSRPVVIYSQFKEALLETQHHMSTDKRVLAPSIMETRVRPHQTIPGRMHPVMCMRG 427
Query: 434 CGGYILSGTRT 444
GGYIL GTR
Sbjct: 428 FGGYILWGTRV 438
>sp|Q5A6Q4|TRM6_CANAL tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=TRM6 PE=3 SV=1
Length = 453
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 197/399 (49%), Gaps = 47/399 (11%)
Query: 56 LIGCPFGSLFQV-DNGKEGP--NLSRV-IPSTEDDVQEKEDAQI-SGEFRDNRAIVD-DN 109
++G P G+ F++ ++ K P ++S + + +++ VQ +E ++ S +N+ I++ +
Sbjct: 50 ILGYPLGTSFEIIEDHKVKPIKSISTLDLTDSDETVQRQELTKMFSDSAENNQNIINIGS 109
Query: 110 KAQCLSGEDIDEMRRQGAT---GEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKV 166
K Q LS +DIDE+++ GA+ G+ I+E +IA F+KKT FSQ+KY +KQ+K+ +
Sbjct: 110 KIQKLSKDDIDELKKSGASSNVGQMIIEKMIAGHEGFDKKTIFSQQKYLKRKQQKFLRRF 169
Query: 167 LLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVA 226
+ + + Y +K+ R+ L V+ L L+L+ NV L++D GG+LT A+
Sbjct: 170 TVDYLGGSELLQYYIEKDLNRVLDLSVETLGLMLTYSNVRPGGKYLIIDETGGVLTYAMM 229
Query: 227 ERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRAS--VSDVTSQSETSEQSDQL 284
ER+ G + + + + +R ++ NE+ V++ + + QSE + +D
Sbjct: 230 ERMNCEGTIVSIHENEHA-NLIALRYSDYGNELETKTVKSVNWLQFIDPQSERIDWTD-- 286
Query: 285 ESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQET 344
+ E++ + KS D +L +N E
Sbjct: 287 --LPDEEVKKIKNKSQYKKRRDRALQ----------------IN--------------EV 314
Query: 345 LKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKM 404
++L +E F + I V+ L+ ++ +LP + S P +Y+Q+ + L +L K
Sbjct: 315 IQLVEEGNFDAFISVST-LNMSEVLEYVLPKIGGSRPIVVYNQFKESLLEVQQALSGDKR 373
Query: 405 AIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTR 443
+ I E +R YQ +P R HP M G GGYIL GTR
Sbjct: 374 VLAPSIYETRVRPYQTIPGRMHPVMTNRGGGGYILWGTR 412
>sp|Q9HGL4|TRM6_SCHPO tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=gcd10 PE=3 SV=1
Length = 462
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 124/474 (26%), Positives = 202/474 (42%), Gaps = 72/474 (15%)
Query: 11 IRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSL-QPLIGCPFGSLFQVDN 69
+R+A E SV + + D + F L +T+ +G L L G F F++
Sbjct: 2 LRHASTISENSSVFIKL-PSDNVRFVTLKPNNTIHLGKFGSFLADDLFGKHFDETFEIYQ 60
Query: 70 GKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQ---- 125
P RV+ + +E I E + N+ + D Q ++ E+IDE+R
Sbjct: 61 ----PKKIRVLKT-------REVQYIEEEKKTNQELNDCRGNQLMTQEEIDELRANIKAG 109
Query: 126 GATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNP 185
G EE ++ L +S TFE+KT F+QEKY +K +KY + + RP + + +P
Sbjct: 110 GLRAEEAIKQLTNSSKTFEQKTLFAQEKYVTRKGEKYLQRFQVLRPCVEVVANYMIEHDP 169
Query: 186 ARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLY 245
+I L + +SL+L++GNV LVVD G + G++ +R+ G C ++
Sbjct: 170 YKILDLTAECISLMLTLGNVKPGGRYLVVDETGCMFLGSLIDRVAG------DCKITLVH 223
Query: 246 PMDIVRIFNFSNEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSME 305
P + + S + D S Q L++ ++ + + S S+E
Sbjct: 224 P---------NEQPNSSCLEYWGQDFKEDSLV--QKGILKTLNWYQVTNPTETLSEYSVE 272
Query: 306 DISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSSMIVVAPELDP 365
DI S N ++ H K ++ K + T+ ++ + ++ +++ P
Sbjct: 273 DIPESELNE-----MKLRH---RKRYETKKATFNRLKNTIDDFESGNYDALFILSIH-TP 323
Query: 366 WSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQ------VRKMA-------------- 405
S ++ LLP L S PF +Y Y Q L H L V K A
Sbjct: 324 MSVLQHLLPKLGISRPFMVYSTYQQVLVETYHQLSKWDNLFVEKTAQSTENDEKVDQGDV 383
Query: 406 ---------IGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTRTATNASS 450
I L I E R YQVLP RTHP M + G G++LSG + T+ S+
Sbjct: 384 AIDTQKEKVIMLDIHEIRTRPYQVLPERTHPFMTVRGDMGFVLSGIKVLTSDSN 437
>sp|Q6CF35|TRM6_YARLI tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TRM6 PE=3 SV=1
Length = 487
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 108/432 (25%), Positives = 203/432 (46%), Gaps = 73/432 (16%)
Query: 36 ARLTSGSTLKIGNKNCSLQ--PLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDD---VQEK 90
+L T+ IG K S Q ++G P+G F++ K R+I DD V
Sbjct: 55 VKLIPNQTISIG-KFGSFQVNDILGLPYGYTFEIQEDKR----LRIIQEGVDDHDYVVGA 109
Query: 91 EDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGA-TGEEIVEALIANSATFEKKTSF 149
+ A + E N+ ++D +++Q LS +I+EM++Q +G++I++ +I F KKT+F
Sbjct: 110 KGALLEPE-ETNQTLIDTSESQTLSMAEIEEMKKQKTLSGKDIIDHVIKGHNEFHKKTAF 168
Query: 150 SQEKYKLKKQKKYAPKVLLRRPFARSICEA-----YFKKNPARIGFLRVDMLSLLLSMGN 204
S+EKY +K++KY LRR + +C + Y +K+ ++ + +ML+LLLSM N
Sbjct: 169 SKEKYLRRKEQKY-----LRRFTPQPMCSSLLLDFYLEKDYKKVLDMSQEMLALLLSMAN 223
Query: 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYP-MDIVRIFNFSNEICKSI 263
V LVVD G+LT A+ ER+ G G + ++ +P +D ++ + E+ +
Sbjct: 224 VRPGGKYLVVDETTGVLTAALMERMAGEGLIV--VAHENEHPNLDALKYLSMPTELQDRM 281
Query: 264 VRAS--VSDVTSQSETSEQSDQLESACNMEIQSN----EQKSSSVSMEDIS-LSSENGVS 316
+++ + + E E +M+ ++ +++ + +++++ L + G
Sbjct: 282 IKSINWLQFFEPEGEEEVPEKTPEQIASMKPRNRGAYFRKRNRWLELQNVNDLVANQGFD 341
Query: 317 DLILEANHSPVNKISKS-HKVGEKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPL 375
LI+ + P + + ++ H +G G ++V +S K+++
Sbjct: 342 GLIVASTLHPASIVDRTLHAIG--------------GSRPVVV-------YSEYKEVVTE 380
Query: 376 LSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCG 435
+S + + L+ LA + +VRK YQ + R HP M G G
Sbjct: 381 VS-----QLMLKDLRVLAPSIWESRVRK--------------YQTILGRMHPSMTSRGGG 421
Query: 436 GYILSGTRTATN 447
GY++ GTR N
Sbjct: 422 GYLVHGTRVFPN 433
>sp|Q75B32|TRM6_ASHGO tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51
/ FGSC 9923 / NRRL Y-1056) GN=TRM6 PE=3 SV=1
Length = 459
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 110/466 (23%), Positives = 195/466 (41%), Gaps = 75/466 (16%)
Query: 8 LDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKN-CSLQPLIGCPFGSLFQ 66
+DP+R L +L+ + D L L + +G C + +IG P G+ F+
Sbjct: 1 MDPLRQLVLNQH---ILVRL-PSDNLKIVELKPNGVISLGKFGACHVNDIIGYPLGTTFE 56
Query: 67 V---DNGKEGPNLSRVIPSTEDDVQEKEDAQISGE--------------FRDNRAIVD-D 108
+ + E S V+ ++ + +AQ+ E + N ++D
Sbjct: 57 IWYEGDETEVVRGSTVVIGKVRVLENRAEAQVGSEGATPQPAELTQVESSKTNMELLDLG 116
Query: 109 NKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLL 168
+K Q L ++I+ M++ G+ I+ +I + TF KKT SQEKY +K++K+A K
Sbjct: 117 HKVQKLDHKEIERMKQDVTAGDSIISMMIQSHETFHKKTIHSQEKYLKRKKQKFA-KFFT 175
Query: 169 RRPFARSICEAYF--KKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVA 226
S Y K + RI L + L + L++ N+ +N L +D GGL+ A+
Sbjct: 176 AEYLGSSGLLRYLIEKGDMQRIMDLSEESLGMALNLANIRSNGTYLCMDETGGLIVYAML 235
Query: 227 ERL--------GGTGYVCNTCIGDSLYP-MDIVRIFNFSNEI----CKSIVRASVSDVTS 273
ER+ GGT V + ++ +P +D+++ N+S E K++ + +
Sbjct: 236 ERMFGGHEAQHGGTIVVVH----ENEHPNLDLLKFSNYSEEFIGKHVKTVSLLQYFEPPT 291
Query: 274 QSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKS 333
E L+ A E++SN++ + ++ + SDL
Sbjct: 292 VEEVEASFTPLDDAQLREMKSNKKGAYYRRLKRYN-------SDL--------------- 329
Query: 334 HKVGEKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLA 393
E ++L + + ++I VA L + V L + S P Y Q+ + L
Sbjct: 330 ---------EVIRLASQITYDALI-VASTLQLSTLVPRLAGKVHGSRPIVCYSQFRETLL 379
Query: 394 TCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYIL 439
H+L + + E R YQ + + HP M M G GGY+L
Sbjct: 380 ELSHTLYDSLHFLAPTLLETRCRPYQTVRGKLHPLMTMRGGGGYLL 425
>sp|Q6CLF6|TRM6_KLULA tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=TRM6 PE=3 SV=1
Length = 476
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 158/356 (44%), Gaps = 55/356 (15%)
Query: 101 DNRAIVD-DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQ 159
+NR +++ + Q +S +I+ M+R+ A+G+ I+ +I + +F +KT SQEKY +K+
Sbjct: 103 NNRGLINLGSVVQEMSMAEIEAMKREAASGDAIISKMIESHKSFHQKTVHSQEKYLKRKK 162
Query: 160 KKYAPKVLLRRPFARSICEAYFKKNPA-RIGFLRVDMLSLLLSMGNVAANSDVLVVDMAG 218
+K+A + + + +K R+ + + L + L++ N+ +N L +D G
Sbjct: 163 QKFAKFFTVEYLDSSGLLHYLIEKGDVLRVMDISQESLGMALNLANINSNGQYLCIDETG 222
Query: 219 GLLTGAVAERL--GGTGYVCN---TCIGDSLYP-MDIVRIFNFSNEICKSIVRASVSDVT 272
GL+ A+ ER+ G + N + ++ +P +D+++ ++S+ + V+
Sbjct: 223 GLIVYAMLERMFAGDSNSKANGKIVVVHENEHPNLDLLKFSSYSDNFIQRHVK------- 275
Query: 273 SQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISK 332
T D E A +I+S + S+ + D+ K
Sbjct: 276 ----TISVLDFFEPAKEADIKSLFKPLSAEEINDL------------------------K 307
Query: 333 SHKVGEKASQETLKLWKENGFSSMIVVAPELDPWS-----FVKDLLPLLSY----SAPFA 383
S+K + A LK W N S++ V A D ++ L+P L S P
Sbjct: 308 SNK--KSAYFRRLK-WYHNQLSNIEVAASSFDGLLVASTLYLPTLIPRLGEKIHGSRPIV 364
Query: 384 IYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYIL 439
Y QY +PL HSL + + E R YQ + + HP M M G GGY++
Sbjct: 365 CYSQYKEPLLELSHSLYENLNYLAPSLLETRCRPYQTVRGKLHPLMTMKGGGGYLM 420
>sp|Q2UJ66|TRM6_ASPOR tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=trm6 PE=3 SV=1
Length = 578
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 31/205 (15%)
Query: 56 LIGCPFGSLFQV--DNGKEGPNLSRVIPSTE-----------DDVQEKEDAQISGEFRDN 102
+IG PF F++ D ++ + R+IP+ E D +E + + R N
Sbjct: 44 IIGRPFYLTFEILDDADEKDGSCLRIIPAAELHAETLIAEGEGDGEELDTNEDGTPMRTN 103
Query: 103 RAIVDDNKAQCLSGEDIDEMRRQ-GATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKK 161
R IVDD Q L+ E+I+ ++++ G G EI+ L+ + T ++KTSFS KY L+K++K
Sbjct: 104 REIVDDASTQKLTWEEIEALKKESGGAGREIISKLLESHQTLDQKTSFSLAKYMLRKRRK 163
Query: 162 YAPKVLLRRPFARSICEAYFKKN--PARIGFLRVDMLSLLLSMGNVAANSDV-------- 211
Y + + P SI + ++ ARI LR +M+ LL GNV D
Sbjct: 164 YMKRFTV-LPLDVSILTNHMMEDQGAARIMELRDEMVGLLGCWGNVHHGGDASLDEAIAA 222
Query: 212 ------LVVDMAGGLLTGAVAERLG 230
LVVD GGL+ A+AER+G
Sbjct: 223 KPNGRYLVVDDTGGLVVAAMAERMG 247
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 48/135 (35%)
Query: 357 IVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPL-------------ATCMHSLQVRK 403
++VA +DP S +K +PLL+ SA A+Y ++PL A Q+R+
Sbjct: 401 LIVATVMDPSSVLKYAVPLLAGSAHVAVYSPSIEPLTELSDLYSTAKKTAFINRRQQLRE 460
Query: 404 MAIGLQISEP----------------------------------WLREYQVLPSRTHPCM 429
+ +P +R +QVLP RTHP M
Sbjct: 461 QKLQQSSDQPDANETELQDSDLSELMAEFYLDPTLLLAPTLQNSRVRPWQVLPGRTHPLM 520
Query: 430 QM-SGCGGYILSGTR 443
M G GYI R
Sbjct: 521 SMRGGAEGYIFHAVR 535
>sp|Q6FNP9|TRM6_CANGA tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TRM6 PE=3 SV=1
Length = 473
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/475 (22%), Positives = 205/475 (43%), Gaps = 77/475 (16%)
Query: 8 LDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNC-SLQPLIGCPFGSLFQ 66
+DP+++ + V+L + G+ + L S++ +G + ++G P G+ F+
Sbjct: 1 MDPLKS---IVQDQHVILTLPSGNSKI-VELKPDSSVSLGKFGAFQVNDILGWPLGTTFE 56
Query: 67 ---------VDNGKEGPNLSRV--IP----------STEDDVQEKED-----AQISGEFR 100
V+N K+ P + + +P +T+D +E+ + A I E +
Sbjct: 57 IYYDNVEEIVENKKKKPKSNELNKVPVGKVRLYKEVATDDKAEEEVEEMDSSAVIPVELQ 116
Query: 101 D------NRAIVD-DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEK 153
+ N+ +++ N Q L+ D++ ++Q A+ EI+ +I + +F +KT +SQEK
Sbjct: 117 NVLSSATNQGLINIGNDVQKLTMHDVERFKQQSASANEIITKMIESHGSFHQKTIYSQEK 176
Query: 154 YKLKKQKKYAPKVLLRRPFARSICEAYF--KKNPARIGFLRVDMLSLLLSMGNVAANSDV 211
Y +K++K+A K + S+ + K + R+ L + L ++L++ N+ ++
Sbjct: 177 YLKRKKQKFA-KFFTVDYLSSSMLLKFLVEKGDIQRVLDLSEESLGMILNLTNIRSDGTY 235
Query: 212 LVVDMAGGLLTGAVAERLGGTGYVCN-----TCIGDSLYP-MDIVRIFNFSNE-ICKSIV 264
L +D GGL+ + ER+ G + I ++ +P +D+++ N+S + I K +V
Sbjct: 236 LCMDETGGLIVYTMLERMFGGKEDLDAPGKIVVINENEHPNLDLLKFSNYSEKFIEKHVV 295
Query: 265 RASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANH 324
S+ D E + E+ N+ KS S A
Sbjct: 296 TLSILDYFRPPTMEEVEGRFTPLSKEEV--NKLKSGKRS------------------AYS 335
Query: 325 SPVNKISKSHKVGEKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAI 384
+ +V E A+++ + +G +VVA L S V L + + P
Sbjct: 336 RKLKWYYTQLRVIEMATKQ-----QYDG----LVVASTLHLPSLVPRLAERVHGARPIVC 386
Query: 385 YHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYIL 439
+ Q+ + L H+L + I E R YQ + HP M M G GGY+L
Sbjct: 387 FSQFKETLLELAHTLYSDLRYLAPTILETRCRPYQTARGKLHPLMTMRGGGGYLL 441
>sp|Q4WE58|TRM6_ASPFU tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=trm6 PE=3 SV=1
Length = 572
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 31/205 (15%)
Query: 56 LIGCPFGSLFQVDN--GKEGPNLSRVIPSTE--------DDVQEKEDAQISGE---FRDN 102
+IG PF F++ + G+ N R++P E D E +D +++ E R N
Sbjct: 44 IIGRPFYLTFEIIDVSGENNDNCLRIVPPAELHAETLIADGEGEGDDVEVNEEGIPIRTN 103
Query: 103 RAIVDDNKAQCLSGEDIDEMRR-QGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKK 161
R IVDD Q ++ E+I+ +++ G EI+E L+ + + ++KT+FS KY L+K+KK
Sbjct: 104 REIVDDASTQKMTAEEIEALKKVSTGAGREIIEKLLESHSALDQKTAFSLAKYTLRKRKK 163
Query: 162 YAPKVLLRRPFARSICEAYF--KKNPARIGFLRVDMLSLLLSMGNV-------------- 205
+ + + P S+ Y K + LR + + L+ GNV
Sbjct: 164 FLKRFTV-LPVDVSLLTNYMLEGKEAMKTMELRDESIGLIGCWGNVHHGGQSSFEGAVAS 222
Query: 206 AANSDVLVVDMAGGLLTGAVAERLG 230
N LV+D GGL+ A+AER+G
Sbjct: 223 KPNGRYLVIDETGGLVVAAMAERMG 247
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 357 IVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPL 392
++VA ++P S +K +PLL+ SAP +Y ++PL
Sbjct: 393 LIVATLMEPASVLKHTVPLLAGSAPVVVYSPTVEPL 428
>sp|P41814|TRM6_YEAST tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GCD10 PE=1 SV=1
Length = 478
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 149/350 (42%), Gaps = 61/350 (17%)
Query: 110 KAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLR 169
KAQ L+ E+I++M+++ + +EI++ +I + +F KT +SQEKY +K++K+A +
Sbjct: 135 KAQELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYVNRKKQKFAKYFTVE 194
Query: 170 RPFARSICEAYFKK-NPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAER 228
+ ++ + K + R+ + + + +LL++ N+ + + L +D GGLL + ER
Sbjct: 195 YLSSSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCMDETGGLLVYFLLER 254
Query: 229 LGG-------TGYVCNTCIGDSLYP-MDIVRIFNFSNEICKSIVRASVSDVTSQSETSEQ 280
+ G G V I ++ + +D+++ N+S + K V T
Sbjct: 255 MFGGDNESKSKGKVI--VIHENEHANLDLLKFANYSEKFIKEHVH-----------TISL 301
Query: 281 SDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNK-ISKSHKVGEK 339
D E EIQS +P+ K +++ K G+K
Sbjct: 302 LDFFEPPTLQEIQS----------------------------RFTPLPKEEARALKGGKK 333
Query: 340 ASQETLKLWKENGFSSM----------IVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYL 389
S W + + +V+A L + V L + S P Y Q+
Sbjct: 334 NSYYRKLRWYNTQWQILELTGEFLYDGLVMATTLHLPTLVPKLAEKIHGSRPIVCYGQFK 393
Query: 390 QPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYIL 439
+ L H+L + I E R YQ + + HP M M G GGY++
Sbjct: 394 ETLLELAHTLYSDLRFLAPSILETRCRPYQSIRGKLHPLMTMKGGGGYLM 443
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 257 NEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVS 316
NE+ + S D + + + S + SAC+M I N +K S ++ D + SE+ VS
Sbjct: 148 NEVAHGLAVFSSRDAAASARDTLLSSDVYSACSMIILDNYRKGSQTNLSDETEGSESSVS 207
Query: 317 DLILEANHSPVNKI 330
L NHSP +
Sbjct: 208 FNRLSRNHSPTRPL 221
>sp|Q49539|DNAK_MYCH2 Chaperone protein DnaK OS=Mycoplasma hyopneumoniae (strain 232)
GN=dnaK PE=3 SV=1
Length = 600
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 160 KKYAPKVLLRRPFARSI-CEAYFK-------KNPARIGFLRVDML-------SLLLSMGN 204
K+YA K + + I AYF KN +I L+V+ + +L +
Sbjct: 100 KEYAEKKIGHKVTKAVITVPAYFDNAQREATKNAGKIAGLQVERIINEPTAAALAFGLDK 159
Query: 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIV 264
VLV D+ GG +V E GGT V +T GD+ D ++ NEI +V
Sbjct: 160 TEKEMKVLVYDLGGGTFDVSVLELSGGTFEVLSTS-GDNHLGGD-----DWDNEIVNWLV 213
Query: 265 R--ASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEA 322
+ V D +S+ + E A +I + Q S+VS+ + + +NG ++ LE
Sbjct: 214 KKIKEVYDFDPKSDKMALTRLKEEAEKTKINLSNQSVSTVSLPFLGM-GKNGPINVELEL 272
Query: 323 NHSPVNKIS 331
S K++
Sbjct: 273 KRSEFEKMT 281
>sp|Q4AAR4|DNAK_MYCHJ Chaperone protein DnaK OS=Mycoplasma hyopneumoniae (strain J / ATCC
25934 / NCTC 10110) GN=dnaK PE=3 SV=1
Length = 600
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 160 KKYAPKVLLRRPFARSI-CEAYFK-------KNPARIGFLRVDML-------SLLLSMGN 204
K+YA K + + I AYF KN +I L+V+ + +L +
Sbjct: 100 KEYAEKKIGHKVTKAVITVPAYFDNAQREATKNAGKIAGLQVERIINEPTAAALAFGLDK 159
Query: 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIV 264
VLV D+ GG +V E GGT V +T GD+ D ++ NEI +V
Sbjct: 160 TEKEMKVLVYDLGGGTFDVSVLELSGGTFEVLSTS-GDNHLGGD-----DWDNEIVNWLV 213
Query: 265 RASVSDVTSQSETSEQSDQL------ESACNMEIQSNEQKSSSVSMEDISLSSENGVSDL 318
+ + + + +SD++ E A +I + Q S+VS+ + + +NG ++
Sbjct: 214 KK----IKEEYDFDPKSDKMALTRLKEEAEKTKINLSNQSVSTVSLPFLGM-GKNGPINV 268
Query: 319 ILEANHSPVNKIS 331
LE S K++
Sbjct: 269 ELELKRSEFEKMT 281
>sp|Q4A8U5|DNAK_MYCH7 Chaperone protein DnaK OS=Mycoplasma hyopneumoniae (strain 7448)
GN=dnaK PE=3 SV=1
Length = 600
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 160 KKYAPKVLLRRPFARSI-CEAYFK-------KNPARIGFLRVDML-------SLLLSMGN 204
K+YA K + + I AYF KN +I L+V+ + +L +
Sbjct: 100 KEYAEKKIGHKVTKAVITVPAYFDNAQREATKNAGKIAGLQVERIINEPTAAALAFGLDK 159
Query: 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIV 264
VLV D+ GG +V E GGT V +T GD+ D ++ NEI +V
Sbjct: 160 TEKEMKVLVYDLGGGTFDVSVLELSGGTFEVLSTS-GDNHLGGD-----DWDNEIVNWLV 213
Query: 265 RASVSDVTSQSETSEQSDQL------ESACNMEIQSNEQKSSSVSMEDISLSSENGVSDL 318
+ + + + +SD++ E A +I + Q S+VS+ + + +NG ++
Sbjct: 214 KK----IKEEYDFDPKSDKMALTRLKEEAEKTKINLSNQSVSTVSLPFLGM-GKNGPINV 268
Query: 319 ILEANHSPVNKIS 331
LE S K++
Sbjct: 269 ELELKRSEFEKMT 281
>sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1
Length = 300
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAG-------GLLTGAVAERL-GGTGY---VC 236
+ +L V++L++LLS+ V N+D+ VD+ G+++G +A L G TGY +
Sbjct: 180 LAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFSGYKYVGMISGVIAGLLFGNTGYYVVLA 239
Query: 237 NTCIGDSLYPMDIVRI 252
CI + + +R+
Sbjct: 240 WCCISIVFFMIRTLRL 255
>sp|B0BAP7|MUTS_CHLTB DNA mismatch repair protein MutS OS=Chlamydia trachomatis serovar
L2b (strain UCH-1/proctitis) GN=mutS PE=3 SV=1
Length = 820
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 370 KDLLPLLSYSAPFAI--YHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHP 427
KDL+ + AP + + ++ Q A + LQ + + I L W EYQ + +
Sbjct: 154 KDLIEAICRLAPTELLSHAKFYQKNAAVIKQLQ-QHLRITLSEYVSWAFEYQSATKKLYT 212
Query: 428 CMQMSGCGGYILSGTRTATNAS 449
C Q+S G+ L G A NA+
Sbjct: 213 CFQVSSLDGFGLQGLVPAINAA 234
>sp|B0B918|MUTS_CHLT2 DNA mismatch repair protein MutS OS=Chlamydia trachomatis serovar
L2 (strain 434/Bu / ATCC VR-902B) GN=mutS PE=3 SV=1
Length = 820
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 370 KDLLPLLSYSAPFAI--YHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHP 427
KDL+ + AP + + ++ Q A + LQ + + I L W EYQ + +
Sbjct: 154 KDLIEAICRLAPTELLSHAKFYQKNAAVIKQLQ-QHLRITLSEYVSWAFEYQSATKKLYT 212
Query: 428 CMQMSGCGGYILSGTRTATNAS 449
C Q+S G+ L G A NA+
Sbjct: 213 CFQVSSLDGFGLQGLVPAINAA 234
>sp|Q8IS41|CO16B_CONVX Conotoxin VxVIB OS=Conus vexillum PE=1 SV=1
Length = 88
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 85 DDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRR 124
D++Q+ ED ++ E D+ D N C SGE IDE R
Sbjct: 39 DEMQDSEDLTLTKECTDDSQFCDPNDHDCCSGECIDEGGR 78
>sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive and respiratory
syndrome virus (isolate Pig/United States/SD 01-08/2001)
PE=1 SV=2
Length = 3838
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 298 KSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFSSMI 357
K +S D S N V LI+ A H ++ + H++G K +E LK F ++
Sbjct: 2823 KRGGLSSGDPVTSVSNTVYSLIIYAQHMVLSALKMGHEIGLKFLEEQLK------FEDLL 2876
Query: 358 VVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPL 392
E+ P D L L + F YH +++ L
Sbjct: 2877 ----EIQPMLVYSDDLVLYAERPTFPNYHWWVEHL 2907
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,110,858
Number of Sequences: 539616
Number of extensions: 6636621
Number of successful extensions: 20709
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 20613
Number of HSP's gapped (non-prelim): 124
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)