Query 012978
Match_columns 452
No_of_seqs 116 out of 458
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1416 tRNA(1-methyladenosine 100.0 3.2E-97 7E-102 744.4 26.2 423 12-449 13-450 (475)
2 PF04189 Gcd10p: Gcd10p family 100.0 6E-77 1.3E-81 589.6 23.0 259 14-273 1-269 (299)
3 COG2519 GCD14 tRNA(1-methylade 100.0 7.7E-40 1.7E-44 313.5 20.0 255 16-447 1-255 (256)
4 PF08704 GCD14: tRNA methyltra 99.9 2.7E-27 5.9E-32 230.0 13.2 173 165-427 2-186 (247)
5 KOG2915 tRNA(1-methyladenosine 99.9 4.8E-25 1E-29 211.9 16.8 231 13-421 9-245 (314)
6 PRK00377 cbiT cobalt-precorrin 98.6 1.5E-06 3.2E-11 82.1 16.9 172 193-443 26-197 (198)
7 PF14801 GCD14_N: tRNA methylt 98.3 1.2E-06 2.5E-11 64.7 4.7 51 14-65 3-53 (54)
8 PRK08287 cobalt-precorrin-6Y C 98.1 0.00013 2.9E-09 67.9 14.9 168 191-443 15-184 (187)
9 COG2242 CobL Precorrin-6B meth 98.0 0.00041 8.8E-09 64.9 16.0 130 196-404 23-153 (187)
10 PLN02476 O-methyltransferase 97.9 6.1E-05 1.3E-09 75.0 10.5 61 181-241 92-152 (278)
11 PRK07402 precorrin-6B methylas 97.9 0.001 2.2E-08 62.5 17.2 171 192-443 25-195 (196)
12 PF01135 PCMT: Protein-L-isoas 97.7 4.4E-05 9.6E-10 73.1 5.6 95 119-240 6-105 (209)
13 PRK04266 fibrillarin; Provisio 97.7 0.00034 7.4E-09 67.8 11.6 48 193-241 55-105 (226)
14 TIGR00080 pimt protein-L-isoas 97.7 9.8E-05 2.1E-09 70.5 7.5 97 117-240 9-110 (215)
15 PLN02781 Probable caffeoyl-CoA 97.5 0.00049 1.1E-08 66.9 9.9 53 189-241 50-102 (234)
16 PRK11933 yebU rRNA (cytosine-C 97.5 0.002 4.2E-08 69.0 14.2 46 196-241 99-147 (470)
17 PRK13942 protein-L-isoaspartat 97.4 0.00047 1E-08 65.9 8.2 52 190-241 59-110 (212)
18 COG2518 Pcm Protein-L-isoaspar 97.4 0.00033 7.3E-09 66.7 6.8 96 119-240 7-102 (209)
19 PRK14902 16S rRNA methyltransf 97.3 0.0033 7.2E-08 66.7 13.6 46 196-241 238-284 (444)
20 COG4122 Predicted O-methyltran 97.3 0.0033 7.1E-08 60.6 12.3 118 193-386 45-166 (219)
21 PRK14967 putative methyltransf 97.3 0.00068 1.5E-08 65.1 7.6 44 195-240 24-67 (223)
22 PLN02589 caffeoyl-CoA O-methyl 97.2 0.0024 5.2E-08 62.7 10.5 54 188-241 60-113 (247)
23 KOG1661 Protein-L-isoaspartate 97.2 0.0006 1.3E-08 64.8 5.8 55 182-236 51-111 (237)
24 PRK13944 protein-L-isoaspartat 97.2 0.0017 3.7E-08 61.7 9.0 49 193-241 58-106 (205)
25 PF01596 Methyltransf_3: O-met 97.1 0.0015 3.2E-08 62.5 7.9 55 187-241 25-79 (205)
26 TIGR00438 rrmJ cell division p 97.0 0.015 3.2E-07 54.2 12.9 48 194-241 19-66 (188)
27 PRK10901 16S rRNA methyltransf 97.0 0.011 2.5E-07 62.4 13.3 46 194-240 230-276 (427)
28 PRK14903 16S rRNA methyltransf 96.9 0.0062 1.3E-07 64.5 10.9 49 193-241 222-271 (431)
29 TIGR00446 nop2p NOL1/NOP2/sun 96.9 0.0095 2.1E-07 58.9 11.4 45 196-240 59-104 (264)
30 PTZ00146 fibrillarin; Provisio 96.9 0.0087 1.9E-07 60.1 11.0 38 203-240 128-165 (293)
31 PRK00312 pcm protein-L-isoaspa 96.9 0.0084 1.8E-07 56.9 10.4 93 118-240 12-108 (212)
32 PRK14901 16S rRNA methyltransf 96.8 0.013 2.7E-07 62.2 12.2 48 193-240 237-285 (434)
33 PRK00121 trmB tRNA (guanine-N( 96.8 0.017 3.6E-07 54.8 11.7 56 349-406 108-176 (202)
34 PRK13943 protein-L-isoaspartat 96.8 0.0098 2.1E-07 60.7 10.7 49 192-240 65-113 (322)
35 PRK11873 arsM arsenite S-adeno 96.8 0.014 3E-07 57.6 11.4 42 199-240 69-110 (272)
36 PRK14968 putative methyltransf 96.6 0.021 4.6E-07 52.3 10.9 38 366-403 128-165 (188)
37 PRK14103 trans-aconitate 2-met 96.4 0.04 8.7E-07 53.8 12.2 51 189-240 11-61 (255)
38 TIGR02469 CbiT precorrin-6Y C5 96.4 0.024 5.1E-07 48.1 9.0 44 196-240 8-51 (124)
39 PRK14904 16S rRNA methyltransf 96.4 0.058 1.2E-06 57.4 13.8 45 197-241 240-284 (445)
40 TIGR02752 MenG_heptapren 2-hep 96.3 0.027 5.9E-07 53.8 10.2 45 196-240 34-78 (231)
41 PRK11188 rrmJ 23S rRNA methylt 96.3 0.069 1.5E-06 51.0 12.3 45 197-241 40-85 (209)
42 TIGR00537 hemK_rel_arch HemK-r 96.2 0.029 6.4E-07 51.7 9.4 37 367-403 121-157 (179)
43 PRK00107 gidB 16S rRNA methylt 96.2 0.18 3.8E-06 47.5 14.7 61 351-417 111-171 (187)
44 PLN02233 ubiquinone biosynthes 96.2 0.052 1.1E-06 53.6 11.3 42 199-240 65-106 (261)
45 TIGR00091 tRNA (guanine-N(7)-) 96.0 0.061 1.3E-06 50.5 10.4 59 350-410 85-156 (194)
46 TIGR00138 gidB 16S rRNA methyl 95.9 0.076 1.7E-06 49.5 10.6 49 350-400 107-155 (181)
47 COG2227 UbiG 2-polyprenyl-3-me 95.5 0.16 3.4E-06 49.6 11.1 52 187-241 39-90 (243)
48 PRK00811 spermidine synthase; 95.5 0.28 6.1E-06 49.0 13.4 57 350-410 148-217 (283)
49 PRK01581 speE spermidine synth 95.4 0.25 5.4E-06 51.3 13.0 50 189-240 133-182 (374)
50 PF01209 Ubie_methyltran: ubiE 95.0 0.066 1.4E-06 52.1 6.9 43 198-240 38-80 (233)
51 PLN03075 nicotianamine synthas 94.9 0.18 3.8E-06 50.9 9.9 67 351-430 194-264 (296)
52 COG2226 UbiE Methylase involve 94.8 0.26 5.7E-06 48.2 10.6 123 200-400 44-173 (238)
53 PRK01683 trans-aconitate 2-met 94.8 0.21 4.6E-06 48.6 10.0 44 196-240 20-63 (258)
54 PRK04457 spermidine synthase; 94.6 0.65 1.4E-05 45.9 13.1 34 206-240 65-98 (262)
55 PRK11705 cyclopropane fatty ac 94.6 0.26 5.7E-06 51.5 10.8 43 196-240 156-198 (383)
56 TIGR00563 rsmB ribosomal RNA s 94.2 0.23 5.1E-06 52.5 9.5 45 196-241 226-271 (426)
57 PRK08317 hypothetical protein; 94.0 0.78 1.7E-05 43.2 11.8 44 197-240 9-52 (241)
58 PLN02366 spermidine synthase 93.8 1.2 2.5E-05 45.3 13.2 50 350-401 163-225 (308)
59 PRK15451 tRNA cmo(5)U34 methyl 93.8 0.66 1.4E-05 45.2 11.0 36 205-240 54-90 (247)
60 TIGR00406 prmA ribosomal prote 93.7 0.65 1.4E-05 46.5 11.0 52 350-401 223-274 (288)
61 TIGR00452 methyltransferase, p 93.4 0.71 1.5E-05 47.0 10.8 41 198-240 112-152 (314)
62 PF12847 Methyltransf_18: Meth 93.3 0.081 1.8E-06 44.2 3.4 33 207-240 1-33 (112)
63 PTZ00098 phosphoethanolamine N 93.3 0.45 9.8E-06 46.9 9.1 58 176-240 23-83 (263)
64 TIGR00417 speE spermidine synt 93.1 2 4.4E-05 42.4 13.5 62 350-415 143-217 (270)
65 PRK15068 tRNA mo(5)U34 methylt 93.0 0.74 1.6E-05 47.0 10.3 41 198-240 113-153 (322)
66 PRK14121 tRNA (guanine-N(7)-)- 92.9 0.89 1.9E-05 47.7 10.9 43 197-240 112-154 (390)
67 PRK03612 spermidine synthase; 92.9 1.6 3.4E-05 47.6 13.3 50 351-402 372-435 (521)
68 TIGR01934 MenG_MenH_UbiE ubiqu 92.7 1.6 3.5E-05 40.8 11.6 44 197-240 29-72 (223)
69 PRK00517 prmA ribosomal protei 92.5 1.4 2.9E-05 43.1 11.1 56 352-409 179-235 (250)
70 PLN02244 tocopherol O-methyltr 92.0 0.96 2.1E-05 46.4 9.8 45 194-240 100-149 (340)
71 TIGR00740 methyltransferase, p 91.9 1.8 3.8E-05 41.7 11.0 36 205-240 51-87 (239)
72 PRK15128 23S rRNA m(5)C1962 me 91.6 3 6.5E-05 43.9 13.0 33 206-240 219-251 (396)
73 KOG1709 Guanidinoacetate methy 90.9 1.8 3.8E-05 41.9 9.4 168 119-387 31-207 (271)
74 PLN02823 spermine synthase 90.7 6.6 0.00014 40.4 14.3 50 350-401 174-241 (336)
75 COG3963 Phospholipid N-methylt 90.5 3.6 7.7E-05 38.3 10.7 60 181-240 19-81 (194)
76 PF01269 Fibrillarin: Fibrilla 90.4 0.57 1.2E-05 45.3 5.7 38 204-241 70-107 (229)
77 PF13659 Methyltransf_26: Meth 90.1 1.5 3.2E-05 36.8 7.6 31 208-240 1-31 (117)
78 PRK11036 putative S-adenosyl-L 90.1 2.3 5E-05 41.5 10.0 41 196-240 34-74 (255)
79 COG0144 Sun tRNA and rRNA cyto 89.9 2.1 4.5E-05 44.4 9.9 48 193-240 141-190 (355)
80 KOG1663 O-methyltransferase [S 89.9 3.6 7.8E-05 40.0 10.7 71 172-242 37-108 (237)
81 PLN02396 hexaprenyldihydroxybe 89.8 8.5 0.00018 39.3 14.1 90 350-445 196-317 (322)
82 COG0421 SpeE Spermidine syntha 89.4 7.1 0.00015 39.2 12.9 59 340-400 135-208 (282)
83 PLN02490 MPBQ/MSBQ methyltrans 89.2 17 0.00036 37.5 15.8 41 199-240 104-145 (340)
84 TIGR03704 PrmC_rel_meth putati 89.1 6.4 0.00014 38.6 12.3 44 366-410 196-239 (251)
85 TIGR01848 PHA_reg_PhaR polyhyd 88.7 1.2 2.6E-05 38.0 5.8 67 101-204 7-79 (107)
86 PRK00216 ubiE ubiquinone/menaq 88.1 5.4 0.00012 37.6 10.8 47 194-240 38-84 (239)
87 TIGR01177 conserved hypothetic 88.1 4.2 9.1E-05 41.4 10.6 48 190-240 165-212 (329)
88 PRK15001 SAM-dependent 23S rib 88.0 3.6 7.9E-05 43.0 10.2 41 199-240 220-260 (378)
89 PRK09489 rsmC 16S ribosomal RN 87.6 4 8.6E-05 42.1 10.1 42 198-240 187-228 (342)
90 PF13847 Methyltransf_31: Meth 87.5 1.7 3.6E-05 38.7 6.4 35 206-240 2-36 (152)
91 KOG1596 Fibrillarin and relate 87.2 1.8 3.9E-05 42.4 6.7 37 205-241 154-190 (317)
92 smart00650 rADc Ribosomal RNA 86.9 1.8 3.9E-05 39.4 6.4 42 197-241 3-44 (169)
93 PRK13168 rumA 23S rRNA m(5)U19 86.9 8.8 0.00019 40.8 12.5 42 196-240 286-327 (443)
94 PF05175 MTS: Methyltransferas 86.9 1.2 2.7E-05 40.7 5.4 49 191-240 14-63 (170)
95 TIGR03534 RF_mod_PrmC protein- 86.8 9 0.0002 36.6 11.6 42 367-410 198-239 (251)
96 cd08239 THR_DH_like L-threonin 86.3 11 0.00023 37.9 12.3 41 199-240 155-196 (339)
97 PLN02336 phosphoethanolamine N 86.1 3.3 7E-05 44.2 8.9 43 196-240 255-297 (475)
98 PRK10481 hypothetical protein; 85.6 2.3 5E-05 41.3 6.6 65 337-402 75-152 (224)
99 TIGR03533 L3_gln_methyl protei 85.5 16 0.00035 36.5 13.0 52 188-240 98-153 (284)
100 PRK11805 N5-glutamine S-adenos 85.3 12 0.00025 38.0 11.9 32 208-240 134-165 (307)
101 TIGR00477 tehB tellurite resis 85.3 10 0.00022 35.4 10.9 41 197-240 20-60 (195)
102 PRK09328 N5-glutamine S-adenos 85.2 13 0.00028 36.3 12.0 37 203-240 104-140 (275)
103 PRK00274 ksgA 16S ribosomal RN 84.5 3.1 6.7E-05 41.2 7.3 45 194-241 29-73 (272)
104 PF05401 NodS: Nodulation prot 84.2 3.1 6.7E-05 39.6 6.6 34 204-240 40-73 (201)
105 PRK11783 rlmL 23S rRNA m(2)G24 84.0 7.9 0.00017 43.8 11.0 35 204-240 535-569 (702)
106 PRK10258 biotin biosynthesis p 83.9 14 0.00029 35.8 11.3 41 197-240 32-72 (251)
107 KOG0024 Sorbitol dehydrogenase 83.9 1.5 3.2E-05 44.7 4.6 55 199-256 161-216 (354)
108 TIGR02072 BioC biotin biosynth 83.5 13 0.00028 34.9 10.9 34 206-240 33-66 (240)
109 TIGR02825 B4_12hDH leukotriene 82.6 19 0.00041 35.9 12.2 37 201-239 132-170 (325)
110 PRK06922 hypothetical protein; 82.4 5.2 0.00011 44.7 8.4 38 202-240 413-450 (677)
111 TIGR00536 hemK_fam HemK family 82.3 15 0.00033 36.4 11.3 32 208-240 115-146 (284)
112 COG4798 Predicted methyltransf 82.1 0.99 2.1E-05 42.9 2.4 47 197-243 38-84 (238)
113 PHA03411 putative methyltransf 81.2 20 0.00043 36.0 11.4 36 204-240 61-96 (279)
114 PRK11207 tellurite resistance 80.8 7.5 0.00016 36.4 8.0 40 198-240 21-60 (197)
115 PRK14966 unknown domain/N5-glu 80.6 28 0.00061 37.0 12.8 52 188-240 231-283 (423)
116 COG1063 Tdh Threonine dehydrog 80.1 22 0.00048 36.5 11.8 37 351-390 237-273 (350)
117 COG1064 AdhP Zn-dependent alco 80.1 11 0.00025 38.8 9.5 41 200-242 159-200 (339)
118 TIGR00479 rumA 23S rRNA (uraci 80.0 26 0.00055 37.0 12.6 41 197-240 282-322 (431)
119 PRK00536 speE spermidine synth 79.6 26 0.00056 34.8 11.6 49 351-401 138-190 (262)
120 PF07879 PHB_acc_N: PHB/PHA ac 79.5 1.8 3.8E-05 33.6 2.6 36 101-136 7-50 (64)
121 PF13489 Methyltransf_23: Meth 79.0 12 0.00027 32.6 8.4 41 350-390 76-119 (161)
122 cd08294 leukotriene_B4_DH_like 78.5 36 0.00077 33.6 12.5 37 201-239 137-175 (329)
123 cd08277 liver_alcohol_DH_like 78.3 35 0.00075 34.8 12.6 40 200-240 177-217 (365)
124 PRK11088 rrmA 23S rRNA methylt 77.8 25 0.00054 34.6 11.0 45 351-399 150-194 (272)
125 cd08301 alcohol_DH_plants Plan 76.9 36 0.00079 34.6 12.3 41 199-240 179-220 (369)
126 cd08281 liver_ADH_like1 Zinc-d 76.8 33 0.00071 35.1 12.0 39 200-239 184-223 (371)
127 PRK01544 bifunctional N5-gluta 76.8 33 0.00071 37.3 12.4 33 207-240 138-170 (506)
128 PF07021 MetW: Methionine bios 76.7 9.8 0.00021 36.1 7.2 35 204-238 10-44 (193)
129 PLN02740 Alcohol dehydrogenase 76.3 35 0.00077 35.1 12.1 39 201-240 192-231 (381)
130 cd08283 FDH_like_1 Glutathione 75.9 36 0.00079 35.0 12.1 39 201-240 178-217 (386)
131 cd08254 hydroxyacyl_CoA_DH 6-h 75.8 37 0.0008 33.5 11.8 39 199-239 157-196 (338)
132 TIGR02716 C20_methyl_CrtF C-20 75.7 11 0.00023 37.8 7.8 43 196-239 138-180 (306)
133 TIGR03366 HpnZ_proposed putati 75.5 39 0.00085 33.0 11.7 40 198-238 111-151 (280)
134 PRK05134 bifunctional 3-demeth 75.1 35 0.00076 32.4 10.9 61 174-240 13-78 (233)
135 KOG1712 Adenine phosphoribosyl 75.1 3 6.4E-05 38.4 3.2 32 201-232 115-151 (183)
136 PLN03154 putative allyl alcoho 74.6 43 0.00094 34.0 12.1 36 201-238 152-189 (348)
137 PF01564 Spermine_synth: Sperm 74.5 44 0.00095 32.7 11.5 48 352-401 150-210 (246)
138 smart00138 MeTrc Methyltransfe 74.2 3.4 7.5E-05 40.8 3.8 63 178-240 70-140 (264)
139 KOG0820 Ribosomal RNA adenine 74.1 7.4 0.00016 39.0 5.9 45 193-240 44-88 (315)
140 PRK10309 galactitol-1-phosphat 72.6 48 0.001 33.3 11.8 37 350-388 226-262 (347)
141 TIGR03451 mycoS_dep_FDH mycoth 72.3 49 0.0011 33.6 11.8 40 200-240 169-209 (358)
142 smart00828 PKS_MT Methyltransf 72.1 16 0.00034 34.5 7.6 30 210-240 2-31 (224)
143 PRK09424 pntA NAD(P) transhydr 72.0 31 0.00067 37.6 10.6 107 111-240 72-196 (509)
144 COG4123 Predicted O-methyltran 71.6 1E+02 0.0022 30.5 13.2 43 198-241 35-77 (248)
145 COG2264 PrmA Ribosomal protein 71.5 36 0.00078 34.6 10.3 33 206-240 161-193 (300)
146 cd08238 sorbose_phosphate_red 71.3 49 0.0011 34.4 11.8 39 202-240 170-211 (410)
147 TIGR02822 adh_fam_2 zinc-bindi 71.1 45 0.00098 33.6 11.2 38 200-239 158-196 (329)
148 cd08300 alcohol_DH_class_III c 70.7 65 0.0014 32.9 12.4 40 200-240 179-219 (368)
149 PLN02336 phosphoethanolamine N 69.7 30 0.00066 36.8 10.0 41 197-240 27-67 (475)
150 TIGR00755 ksgA dimethyladenosi 69.2 11 0.00024 36.7 6.1 44 194-240 16-59 (253)
151 PRK14896 ksgA 16S ribosomal RN 69.1 12 0.00027 36.6 6.4 45 194-241 16-60 (258)
152 cd08295 double_bond_reductase_ 68.9 71 0.0015 31.9 12.0 37 201-239 145-183 (338)
153 PF00398 RrnaAD: Ribosomal RNA 68.9 8.3 0.00018 37.9 5.1 45 194-241 17-61 (262)
154 TIGR03587 Pse_Me-ase pseudamin 68.0 29 0.00063 32.9 8.4 35 205-240 41-75 (204)
155 PRK12335 tellurite resistance 67.9 19 0.0004 35.9 7.5 32 206-240 119-150 (287)
156 PLN02827 Alcohol dehydrogenase 67.8 73 0.0016 32.8 12.1 37 202-239 188-225 (378)
157 KOG4589 Cell division protein 67.5 92 0.002 29.8 11.2 37 204-240 66-102 (232)
158 PF02353 CMAS: Mycolic acid cy 67.5 7.3 0.00016 38.8 4.4 43 196-240 51-93 (273)
159 TIGR02818 adh_III_F_hyde S-(hy 66.8 88 0.0019 32.0 12.4 38 201-239 179-217 (368)
160 cd08293 PTGR2 Prostaglandin re 66.6 93 0.002 31.0 12.4 38 201-239 146-187 (345)
161 PF08241 Methyltransf_11: Meth 66.0 5 0.00011 31.6 2.4 35 350-384 58-95 (95)
162 cd05188 MDR Medium chain reduc 65.3 1.1E+02 0.0023 28.7 12.0 36 350-388 199-234 (271)
163 PTZ00338 dimethyladenosine tra 65.2 14 0.00031 37.2 6.0 44 194-240 23-66 (294)
164 TIGR02819 fdhA_non_GSH formald 65.2 81 0.0018 32.8 11.9 32 200-231 178-210 (393)
165 PF07302 AroM: AroM protein; 64.9 18 0.00039 35.1 6.3 65 337-401 72-147 (221)
166 COG0030 KsgA Dimethyladenosine 64.2 15 0.00033 36.4 5.9 43 195-240 18-60 (259)
167 TIGR03201 dearomat_had 6-hydro 64.2 83 0.0018 31.8 11.5 38 201-240 160-198 (349)
168 PRK09880 L-idonate 5-dehydroge 63.8 65 0.0014 32.4 10.7 40 200-240 162-202 (343)
169 cd08285 NADP_ADH NADP(H)-depen 63.8 1.2E+02 0.0025 30.5 12.5 40 200-240 159-199 (351)
170 PF02558 ApbA: Ketopantoate re 62.7 12 0.00027 32.8 4.6 50 350-399 65-114 (151)
171 cd05279 Zn_ADH1 Liver alcohol 62.6 1.2E+02 0.0026 30.8 12.5 38 200-238 176-214 (365)
172 cd08292 ETR_like_2 2-enoyl thi 62.6 1.2E+02 0.0027 29.6 12.2 37 200-238 132-170 (324)
173 TIGR00308 TRM1 tRNA(guanine-26 59.5 1E+02 0.0022 32.3 11.2 41 351-392 113-153 (374)
174 PRK10909 rsmD 16S rRNA m(2)G96 59.3 1.1E+02 0.0025 28.9 10.7 34 205-240 51-84 (199)
175 cd08243 quinone_oxidoreductase 59.2 1.5E+02 0.0032 28.7 12.0 37 201-239 136-174 (320)
176 PF08616 SPA: Stabilization of 58.9 14 0.00031 31.9 4.0 62 369-439 15-84 (113)
177 cd08299 alcohol_DH_class_I_II_ 58.8 1.7E+02 0.0036 30.0 12.8 40 200-240 183-223 (373)
178 smart00105 ArfGap Putative GTP 57.9 7.6 0.00016 33.3 2.2 47 113-159 50-104 (112)
179 PF04989 CmcI: Cephalosporin h 57.5 82 0.0018 30.2 9.3 48 193-241 19-69 (206)
180 cd02440 AdoMet_MTases S-adenos 57.2 63 0.0014 24.7 7.4 34 351-385 65-103 (107)
181 KOG1540 Ubiquinone biosynthesi 57.0 1.7E+02 0.0037 29.3 11.5 42 199-240 92-138 (296)
182 cd08231 MDR_TM0436_like Hypoth 56.1 1.7E+02 0.0037 29.4 12.2 35 351-388 248-282 (361)
183 cd08265 Zn_ADH3 Alcohol dehydr 55.6 1.7E+02 0.0037 30.0 12.2 37 350-388 273-309 (384)
184 cd08250 Mgc45594_like Mgc45594 53.5 2.3E+02 0.005 27.8 12.7 36 202-239 134-171 (329)
185 COG0604 Qor NADPH:quinone redu 51.5 1.1E+02 0.0023 31.3 9.7 35 197-231 131-168 (326)
186 cd05285 sorbitol_DH Sorbitol d 51.1 2.4E+02 0.0052 28.1 12.3 38 200-238 155-193 (343)
187 COG0075 Serine-pyruvate aminot 50.4 34 0.00074 35.9 6.0 51 194-244 65-117 (383)
188 PRK15219 carbonic anhydrase; P 50.0 31 0.00067 34.0 5.3 98 125-226 49-161 (245)
189 PF02527 GidB: rRNA small subu 49.5 1E+02 0.0022 28.8 8.6 61 350-413 113-176 (184)
190 cd08261 Zn_ADH7 Alcohol dehydr 49.2 2.5E+02 0.0054 27.8 12.0 37 200-238 152-189 (337)
191 cd08233 butanediol_DH_like (2R 49.1 2.5E+02 0.0053 28.1 12.0 38 200-238 165-203 (351)
192 PRK10083 putative oxidoreducta 48.9 2.2E+02 0.0049 28.1 11.6 39 199-238 152-192 (339)
193 cd05288 PGDH Prostaglandin deh 48.7 2.7E+02 0.0058 27.2 12.5 37 201-239 139-177 (329)
194 cd08296 CAD_like Cinnamyl alco 48.7 2.8E+02 0.006 27.6 12.2 37 201-240 157-195 (333)
195 cd08276 MDR7 Medium chain dehy 48.2 2.3E+02 0.005 27.6 11.4 40 198-239 151-191 (336)
196 cd08269 Zn_ADH9 Alcohol dehydr 48.1 2.6E+02 0.0057 26.9 12.3 38 200-238 122-160 (312)
197 cd08236 sugar_DH NAD(P)-depend 47.9 2.9E+02 0.0063 27.3 12.3 35 351-388 226-260 (343)
198 cd08278 benzyl_alcohol_DH Benz 47.8 3E+02 0.0065 27.9 12.5 39 200-239 179-218 (365)
199 PRK00050 16S rRNA m(4)C1402 me 47.5 40 0.00086 34.1 5.8 45 196-240 8-52 (296)
200 COG1889 NOP1 Fibrillarin-like 47.2 32 0.00069 33.2 4.6 46 196-242 62-110 (231)
201 PF00107 ADH_zinc_N: Zinc-bind 47.1 1E+02 0.0022 25.9 7.7 36 351-389 57-92 (130)
202 PRK06201 hypothetical protein; 47.1 49 0.0011 32.0 6.1 58 195-257 67-131 (221)
203 cd08258 Zn_ADH4 Alcohol dehydr 47.0 1.9E+02 0.0041 28.5 10.6 36 351-389 232-267 (306)
204 cd08284 FDH_like_2 Glutathione 45.3 3E+02 0.0065 27.2 11.9 39 199-238 159-198 (344)
205 cd05286 QOR2 Quinone oxidoredu 45.1 2.8E+02 0.006 26.5 11.3 36 201-238 130-167 (320)
206 KOG3387 60S ribosomal protein 43.6 90 0.002 27.6 6.5 68 346-414 44-111 (131)
207 cd08263 Zn_ADH10 Alcohol dehyd 43.3 3.5E+02 0.0075 27.3 12.1 35 351-388 255-289 (367)
208 cd08279 Zn_ADH_class_III Class 43.3 3.1E+02 0.0067 27.7 11.8 34 351-387 250-283 (363)
209 cd08230 glucose_DH Glucose deh 43.2 45 0.00097 33.8 5.5 36 203-240 168-204 (355)
210 PF00072 Response_reg: Respons 43.0 1.2E+02 0.0027 24.2 7.3 48 342-390 33-82 (112)
211 cd08240 6_hydroxyhexanoate_dh_ 42.5 3.6E+02 0.0078 26.9 12.5 36 203-239 171-207 (350)
212 TIGR01983 UbiG ubiquinone bios 41.5 2.7E+02 0.0058 25.9 10.3 38 351-388 111-151 (224)
213 TIGR00692 tdh L-threonine 3-de 41.4 2.2E+02 0.0049 28.3 10.3 36 350-388 228-263 (340)
214 TIGR03855 NAD_NadX aspartate d 41.3 85 0.0019 30.5 6.8 56 345-403 30-89 (229)
215 cd00401 AdoHcyase S-adenosyl-L 41.2 2E+02 0.0043 30.6 10.0 47 192-240 185-233 (413)
216 PHA03412 putative methyltransf 40.2 57 0.0012 32.1 5.4 33 208-240 50-84 (241)
217 PF08004 DUF1699: Protein of u 39.7 30 0.00064 30.6 3.0 24 116-139 94-117 (131)
218 cd05278 FDH_like Formaldehyde 39.5 1.5E+02 0.0033 29.3 8.7 36 201-238 161-198 (347)
219 cd01444 GlpE_ST GlpE sulfurtra 39.3 45 0.00098 26.6 4.0 44 365-409 42-85 (96)
220 cd01445 TST_Repeats Thiosulfat 39.1 60 0.0013 28.7 5.0 43 194-237 81-128 (138)
221 COG1893 ApbA Ketopantoate redu 39.0 66 0.0014 32.6 5.9 50 351-400 66-115 (307)
222 PF01408 GFO_IDH_MocA: Oxidore 38.6 1.1E+02 0.0024 25.4 6.4 59 346-407 56-117 (120)
223 COG0684 MenG Demethylmenaquino 38.5 66 0.0014 30.9 5.4 52 201-257 64-122 (210)
224 PF03737 Methyltransf_6: Demet 38.1 75 0.0016 28.7 5.6 58 194-256 45-109 (154)
225 PRK10754 quinone oxidoreductas 37.9 4E+02 0.0086 26.1 12.3 36 202-239 135-172 (327)
226 cd05284 arabinose_DH_like D-ar 37.8 4.1E+02 0.0088 26.2 11.8 37 203-240 163-200 (340)
227 TIGR00095 RNA methyltransferas 37.5 3.4E+02 0.0074 25.2 11.1 52 169-240 29-80 (189)
228 PF13578 Methyltransf_24: Meth 37.5 38 0.00083 27.8 3.3 40 344-384 61-103 (106)
229 cd08298 CAD2 Cinnamyl alcohol 37.1 3.5E+02 0.0076 26.5 10.8 37 201-239 161-198 (329)
230 PLN00416 carbonate dehydratase 37.0 78 0.0017 31.4 5.9 102 121-225 37-157 (258)
231 cd05281 TDH Threonine dehydrog 36.8 3.1E+02 0.0066 27.3 10.4 35 351-388 230-264 (341)
232 PF05430 Methyltransf_30: S-ad 36.8 29 0.00063 30.4 2.6 60 340-403 36-103 (124)
233 PF02153 PDH: Prephenate dehyd 36.8 46 0.001 32.6 4.3 51 351-401 44-94 (258)
234 PRK13600 putative ribosomal pr 36.5 1.1E+02 0.0025 25.0 5.8 54 341-396 18-71 (84)
235 cd08244 MDR_enoyl_red Possible 36.5 4.1E+02 0.0088 25.8 11.5 38 200-239 135-174 (324)
236 cd08249 enoyl_reductase_like e 35.3 2.9E+02 0.0063 27.5 10.0 33 204-238 151-185 (339)
237 COG3088 CcmH Uncharacterized p 34.0 77 0.0017 28.9 4.8 63 98-183 48-113 (153)
238 PLN02232 ubiquinone biosynthes 33.9 40 0.00087 30.4 3.1 38 350-387 42-82 (160)
239 COG2897 SseA Rhodanese-related 33.6 83 0.0018 31.7 5.5 60 363-423 216-277 (285)
240 PF13936 HTH_38: Helix-turn-he 33.6 26 0.00057 24.7 1.5 28 113-140 4-34 (44)
241 PF06325 PrmA: Ribosomal prote 33.3 98 0.0021 31.3 6.0 34 205-240 159-192 (295)
242 PRK09422 ethanol-active dehydr 33.1 4.8E+02 0.01 25.6 12.8 34 352-388 230-263 (338)
243 cd08286 FDH_like_ADH2 formalde 32.6 5E+02 0.011 25.7 12.1 35 351-388 234-268 (345)
244 PF05185 PRMT5: PRMT5 arginine 32.0 58 0.0013 34.9 4.4 72 168-242 140-224 (448)
245 PRK13699 putative methylase; P 32.0 1.1E+02 0.0023 29.6 5.9 49 367-418 53-101 (227)
246 COG1504 Uncharacterized conser 31.9 87 0.0019 27.2 4.5 63 342-405 51-113 (121)
247 PRK10144 formate-dependent nit 31.1 48 0.001 29.3 2.9 41 98-139 44-86 (126)
248 PRK04338 N(2),N(2)-dimethylgua 31.1 5E+02 0.011 27.1 11.1 44 350-394 123-166 (382)
249 cd01523 RHOD_Lact_B Member of 31.0 2.3E+02 0.0049 22.8 7.0 32 371-402 53-84 (100)
250 COG2230 Cfa Cyclopropane fatty 30.9 56 0.0012 32.9 3.8 43 196-240 61-103 (283)
251 KOG1270 Methyltransferases [Co 30.8 26 0.00057 34.9 1.4 64 351-427 157-223 (282)
252 cd08237 ribitol-5-phosphate_DH 30.7 69 0.0015 32.4 4.5 38 203-240 159-197 (341)
253 COG4628 Uncharacterized conser 30.2 44 0.00095 29.0 2.4 66 119-185 7-105 (136)
254 TIGR00745 apbA_panE 2-dehydrop 29.7 80 0.0017 30.8 4.7 49 351-399 58-106 (293)
255 COG0293 FtsJ 23S rRNA methylas 29.7 5.1E+02 0.011 24.9 10.8 38 205-242 43-80 (205)
256 KOG0022 Alcohol dehydrogenase, 29.6 85 0.0019 32.3 4.8 47 196-242 181-227 (375)
257 COG0357 GidB Predicted S-adeno 29.5 3.5E+02 0.0075 26.1 8.8 47 353-401 136-185 (215)
258 PRK06249 2-dehydropantoate 2-r 29.5 90 0.002 31.3 5.1 49 351-399 71-119 (313)
259 PRK05785 hypothetical protein; 29.4 5E+02 0.011 24.7 12.1 43 194-240 40-82 (226)
260 TIGR03147 cyt_nit_nrfF cytochr 29.1 52 0.0011 29.1 2.8 41 98-139 44-86 (126)
261 cd08256 Zn_ADH2 Alcohol dehydr 28.7 5.9E+02 0.013 25.3 12.4 37 201-238 168-205 (350)
262 PF08151 FerI: FerI (NUC094) d 28.6 1E+02 0.0023 24.5 4.2 35 413-450 13-47 (72)
263 cd08297 CAD3 Cinnamyl alcohol 28.4 5.8E+02 0.013 25.1 12.3 36 202-239 160-197 (341)
264 PF08831 MHCassoc_trimer: Clas 28.1 3.2 7E-05 32.9 -4.3 49 371-419 6-54 (72)
265 PRK12487 ribonuclease activity 27.5 1.2E+02 0.0025 28.1 5.0 51 201-256 51-108 (163)
266 PF12990 DUF3874: Domain of un 27.3 1.2E+02 0.0025 24.3 4.3 37 170-206 25-61 (73)
267 cd01524 RHOD_Pyr_redox Member 27.2 1.7E+02 0.0037 23.1 5.5 44 365-410 37-80 (90)
268 PRK07028 bifunctional hexulose 27.0 1.2E+02 0.0027 32.0 5.8 59 194-257 276-340 (430)
269 PF04814 HNF-1_N: Hepatocyte n 26.9 38 0.00083 31.7 1.7 26 113-138 4-32 (180)
270 COG1576 Uncharacterized conser 26.3 1.1E+02 0.0024 28.1 4.5 96 152-261 13-115 (155)
271 TIGR02227 sigpep_I_bact signal 26.2 72 0.0016 29.0 3.4 57 11-71 28-88 (163)
272 PF00532 Peripla_BP_1: Peripla 26.1 1.2E+02 0.0025 29.9 5.1 56 343-402 47-116 (279)
273 COG2826 Tra8 Transposase and i 26.0 83 0.0018 32.0 3.9 48 113-160 7-68 (318)
274 KOG1562 Spermidine synthase [A 25.9 3.6E+02 0.0078 27.6 8.4 86 345-442 188-282 (337)
275 PLN02256 arogenate dehydrogena 25.4 1.5E+02 0.0033 29.9 5.9 49 351-399 91-140 (304)
276 cd04466 S1_YloQ_GTPase S1_YloQ 24.9 1.6E+02 0.0034 22.1 4.6 26 15-40 36-61 (68)
277 KOG3967 Uncharacterized conser 24.9 1.9E+02 0.004 28.4 5.9 88 151-244 133-226 (297)
278 cd03378 beta_CA_cladeC Carboni 24.7 2.3E+02 0.005 25.8 6.3 60 130-191 2-67 (154)
279 PF08351 DUF1726: Domain of un 24.0 1.2E+02 0.0025 25.2 3.9 47 349-396 8-55 (92)
280 TIGR01935 NOT-MenG RraA famliy 23.9 2.1E+02 0.0045 26.0 5.9 52 201-257 47-105 (150)
281 COG5394 Uncharacterized protei 23.5 70 0.0015 29.5 2.7 37 101-137 16-60 (193)
282 COG0796 MurI Glutamate racemas 23.3 7.6E+02 0.017 24.7 10.3 50 341-394 56-106 (269)
283 PRK05708 2-dehydropantoate 2-r 22.8 1.1E+02 0.0024 30.7 4.3 49 351-399 69-117 (305)
284 cd01528 RHOD_2 Member of the R 22.8 1.9E+02 0.0041 23.4 5.0 31 378-409 57-87 (101)
285 cd08274 MDR9 Medium chain dehy 22.7 2E+02 0.0044 28.4 6.3 38 200-239 170-209 (350)
286 PRK12921 2-dehydropantoate 2-r 22.7 1.6E+02 0.0034 29.1 5.3 49 351-399 67-115 (305)
287 cd01535 4RHOD_Repeat_4 Member 22.5 1.8E+02 0.0039 25.9 5.2 54 365-420 35-89 (145)
288 KOG1271 Methyltransferases [Ge 22.4 66 0.0014 30.6 2.3 33 367-401 162-195 (227)
289 PRK06545 prephenate dehydrogen 22.3 1.1E+02 0.0024 31.4 4.3 49 351-399 59-108 (359)
290 PRK00865 glutamate racemase; P 22.3 5.8E+02 0.013 24.9 9.2 21 341-361 56-76 (261)
291 PLN03131 hypothetical protein; 22.2 69 0.0015 35.6 2.7 48 113-160 67-122 (705)
292 KOG2862 Alanine-glyoxylate ami 22.2 1.5E+02 0.0032 30.6 4.8 49 196-244 79-129 (385)
293 TIGR02798 ligK_PcmE 4-carboxy- 22.0 2.3E+02 0.0049 27.5 6.0 51 201-256 69-126 (222)
294 cd08251 polyketide_synthase po 21.9 6.8E+02 0.015 23.6 12.0 38 200-239 113-152 (303)
295 PF01189 Nol1_Nop2_Fmu: NOL1/N 21.9 1.8E+02 0.004 29.0 5.6 49 192-240 69-118 (283)
296 PRK03522 rumB 23S rRNA methylu 21.7 8.2E+02 0.018 24.5 11.2 38 200-240 166-203 (315)
297 cd08235 iditol_2_DH_like L-idi 21.3 7.9E+02 0.017 24.1 12.1 38 200-238 158-196 (343)
298 PF11961 DUF3475: Domain of un 21.2 55 0.0012 24.9 1.3 31 112-143 18-48 (57)
299 PF05219 DREV: DREV methyltran 21.1 66 0.0014 32.1 2.1 29 362-390 164-197 (265)
300 COG2890 HemK Methylase of poly 21.0 87 0.0019 31.3 3.1 54 186-240 87-142 (280)
301 PF08541 ACP_syn_III_C: 3-Oxoa 20.8 86 0.0019 25.0 2.5 28 196-223 57-84 (90)
302 TIGR03318 YdfZ_fam putative se 20.5 47 0.001 25.8 0.8 25 205-229 11-36 (65)
303 KOG3191 Predicted N6-DNA-methy 20.5 1.4E+02 0.003 28.5 4.0 25 208-232 44-68 (209)
304 PF14001 YdfZ: YdfZ protein 20.5 35 0.00076 26.5 0.1 14 205-218 10-23 (64)
305 cd00079 HELICc Helicase superf 20.2 1.9E+02 0.0041 23.8 4.7 8 393-400 68-75 (131)
306 PRK08008 caiC putative crotono 20.1 2.6E+02 0.0056 29.4 6.7 49 191-241 45-95 (517)
307 cd08234 threonine_DH_like L-th 20.0 8.2E+02 0.018 23.8 11.7 34 351-387 225-258 (334)
No 1
>KOG1416 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD10 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-97 Score=744.44 Aligned_cols=423 Identities=40% Similarity=0.578 Sum_probs=336.0
Q ss_pred CCCCCccCCCEEEEEeCCCCeEEEEEEccCCEEEEcceeeecCCccCCC----CCcEEEEeCCCCCCCccccCCCCcchh
Q 012978 12 RNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCP----FGSLFQVDNGKEGPNLSRVIPSTEDDV 87 (452)
Q Consensus 12 ~~~~~i~eGd~Vll~~~~g~~~~~v~l~~~~~v~~gK~~f~~~~lIG~p----yG~~fei~~~~~~~~~~~~~~~~d~~~ 87 (452)
++...|+.|++|+|...||.+..+++..++++|.+||..|.+|+++|+| ||+.|++..+.......+..+ ..
T Consensus 13 ps~~~i~~g~~v~L~k~d~~~~v~v~~~~~~~i~~~k~~f~~d~~~gkpk~~~~g~~fe~~~~e~~~~~s~~~~----~~ 88 (475)
T KOG1416|consen 13 PSKIEIKSGTSVKLQKFDGFRVVDVRGGPTKKILIGKEGFSADNLFGKPKNRLLGQEFEVTNEEKDDGLSSPPL----SK 88 (475)
T ss_pred CCceeecCCceEEeeccCCceeeeeecccccEEEeccccccchhhhCCCCccccchhhhhhcccccccccccCc----cc
Confidence 3446889999999999999877776777999999999669999999999 999999988743222111110 01
Q ss_pred hhhhhhhccccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhccccccccccccHHHHHHHhhhccCCcEE
Q 012978 88 QEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVL 167 (452)
Q Consensus 88 ~~~~~~~~~~~~~dNr~i~Dd~~~QkLs~eeI~~lK~~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~~~ 167 (452)
.+.+..+..++++|||+|+|++++|+||.|||++||++|++|+|||++||+||+||++||+||||||++||+|||+.+|+
T Consensus 89 ~e~ev~~~~e~s~dNr~ivd~~kaQ~Lt~EeI~~mr~eg~~g~EiI~kLienSkTF~~KT~fSQeKYv~rK~kKy~~~~~ 168 (475)
T KOG1416|consen 89 KEREVLEISESSADNREIVDDGKAQKLTQEEIEEMRQEGLSGEEIIEKLIENSKTFHNKTVFSQEKYVLRKKKKYAKRFQ 168 (475)
T ss_pred cccccccccccCCCchhhhcccccccCCHHHHHHHHHhccCHHHHHHHHHhcCcccccchhhhHHHHHHHHhhhhhhhee
Confidence 12445778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHhcCcccccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCCch
Q 012978 168 LRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPM 247 (452)
Q Consensus 168 i~~pt~~~l~e~y~~Kdp~Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~~~ 247 (452)
|++||+|+||++||.|||+||++||.|+|||||+||||++|++|||+|.|+||++|||+|||||.|.|+++|+|.+|+ .
T Consensus 169 v~rPt~r~l~~~yy~kdp~rI~~lr~D~Lsl~Ltlanv~~g~~~Lv~d~tgGL~~galleRmgG~G~i~~~hpG~vp~-~ 247 (475)
T KOG1416|consen 169 VLRPTIRLLLQAYYDKDPQRILDLRADTLSLLLTLANVQAGGNYLVVDETGGLLLGALLERMGGTGDIIHKHPGKVPQ-I 247 (475)
T ss_pred eechhHHHHHHHHHHhChHHHhhhhHHHHHHHHHHhCcccCCeEEEEecCCcchHHHHHHHhcCCceeEEecCCCCch-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 8
Q ss_pred hhhhhcCCCHHHHHhhhccccccccccC---cCccc--chhhhhhhhhhcccccccCCCCccccccccccccc-chhhhh
Q 012978 248 DIVRIFNFSNEICKSIVRASVSDVTSQS---ETSEQ--SDQLESACNMEIQSNEQKSSSVSMEDISLSSENGV-SDLILE 321 (452)
Q Consensus 248 ~~~~~~nf~~~~~~~~~~~~l~~l~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 321 (452)
.++..|||+...+++++.+||+.+.++. ...+. +...+++.+. ++.. .++...+.+...+.+. .+.. +
T Consensus 248 ~~~~~~~~~d~~l~~lv~~~i~~vl~~~h~~~~~~~~~~~ve~~e~~l----~E~~-~~~~~~eE~~a~~~~~~~~~i-~ 321 (475)
T KOG1416|consen 248 SAVLIFNFPDANLDRLVQVNINEVLSKKHVTTDANLLYSVVEPPENEL----NETQ-LSPLPKEEPEAIEPGKLKNTI-D 321 (475)
T ss_pred HHHHHhcCchhhhhheeeccHHHHhHhhhcCCccccccceecCCCCch----hhhc-cCCcccccchhcCCCcccccc-c
Confidence 9999999999999999999999885311 11110 0111111111 1100 0000111110000000 0000 0
Q ss_pred cCCCccccccccccc--cccchHHHHHHhhhcCcceEEEeCCCCChHHHHHhHHh---cccCCCcEEEEeCChHHHHHHH
Q 012978 322 ANHSPVNKISKSHKV--GEKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLP---LLSYSAPFAIYHQYLQPLATCM 396 (452)
Q Consensus 322 ~~~~~~~~~~k~~~~--~~~~~~~~~~~~~~~~~D~liia~~~~dP~~il~~ll~---~L~pS~p~VVYsp~~epL~e~~ 396 (452)
...+..++.+. ......+..+.|...++-++++.....|||.+++.++| +|+|||||||||||.|||++||
T Consensus 322 ----~~~~~~r~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~~d~~vvae~~hpll~~l~pSrp~viy~q~ke~L~e~~ 397 (475)
T KOG1416|consen 322 ----HKESLIRKAKWYNSQWQIKEGIEEWLYEGLVSAILMHRPTDPLVVAEKIHPLLDNLAPSRPIVIYSQYKEPLQECY 397 (475)
T ss_pred ----cchhhhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhcccccchhhHHHhcccccccCCCCCEEEeechhHHHHHHH
Confidence 00011111111 01123445567777777777777666788888877766 9999999999999999999999
Q ss_pred HHHHhccCccceeeeeeeeeeeeecCCCCCCCCcccCceEEEEEEEEecCCCC
Q 012978 397 HSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTRTATNAS 449 (452)
Q Consensus 397 ~~L~~~~~~v~l~l~E~~lR~yQVLP~RTHP~m~m~~~~GyiLsg~kv~~~~~ 449 (452)
++|++.+.++|++|+|+|+|.|||||+||||.|+|+|.|||||||+||.+.+.
T Consensus 398 ~~L~~~~~vinL~ite~wlR~YQVLP~RtHP~M~msg~gGylLsGikv~~~~~ 450 (475)
T KOG1416|consen 398 HKLYQRGKVINLSITETWLRPYQVLPDRTHPLMTMSGGGGYLLSGIKVITAPE 450 (475)
T ss_pred HHHhhcCceEeeeechhhccceeecCCCCCcceEeecCCceEEeeeEEecCcc
Confidence 99999999999999999999999999999999999999999999999987653
No 2
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=100.00 E-value=6e-77 Score=589.60 Aligned_cols=259 Identities=40% Similarity=0.646 Sum_probs=231.0
Q ss_pred CCCccCCCEEEEEeCCCCeEEEEEEccCCEEEEcc-eeeecCCccCCCCCcEEEEeCCCCCCCccccCCC-Cc---c---
Q 012978 14 AQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGN-KNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPS-TE---D--- 85 (452)
Q Consensus 14 ~~~i~eGd~Vll~~~~g~~~~~v~l~~~~~v~~gK-~~f~~~~lIG~pyG~~fei~~~~~~~~~~~~~~~-~d---~--- 85 (452)
++.|++||+|+|++++| ..++++|+++++|+||| ++|++++|||+|||+||||..++....+...... +. +
T Consensus 1 h~~I~~gd~Vil~~~~~-~~k~v~l~~~~~i~lGK~~sf~~~~lIG~pyg~tfEi~~~~~l~~v~~~~~~~~~~~~~~~~ 79 (299)
T PF04189_consen 1 HSIIQEGDYVILRLPSG-NMKIVKLKPNKTISLGKFGSFPLNDLIGRPYGSTFEIQDDKKLRVVPRNELHAEKDPDDDEE 79 (299)
T ss_pred CCCcCCCCEEEEEcCCC-cEEEEEECCCCEEEecCCCcccHHHhcCCCCCcEEEEeCCCccccccccccccccccccccc
Confidence 46899999999999966 67799999999999999 6699999999999999999999843332211100 00 0
Q ss_pred hhhhhhhhhccccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhccccccccccccHHHHHHHhhhccCCc
Q 012978 86 DVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPK 165 (452)
Q Consensus 86 ~~~~~~~~~~~~~~~dNr~i~Dd~~~QkLs~eeI~~lK~~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~ 165 (452)
.....+..+..+.++|||+|+|+|++|+||++||++||++|++|+|||++||+||+||++||+||||||+|||+|||+++
T Consensus 80 ~~~~~~~~~~~~~~~dNr~i~D~~~~QkLt~eeIe~LK~~g~sg~eII~kLiens~tF~~KT~FSqeKYlkrK~kKy~~~ 159 (299)
T PF04189_consen 80 EGDDSEELENEESSRDNRNIIDDNSSQKLTQEEIEELKKEGVSGEEIIEKLIENSSTFDKKTEFSQEKYLKRKQKKYLKR 159 (299)
T ss_pred ccccccccccccccccccccccccccccCCHHHHHHHHHcCCCHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhhhhce
Confidence 00112345667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHhcCcccccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCC
Q 012978 166 VLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLY 245 (452)
Q Consensus 166 ~~i~~pt~~~l~e~y~~Kdp~Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~ 245 (452)
|+|++||+++||++||.|||.||++||+|+|||||+||||++|+||||+|+|+|||+|||||||||.|+|+++|.+++||
T Consensus 160 ftv~~pt~~~l~e~y~~k~p~Ki~~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~~~~~~~p 239 (299)
T PF04189_consen 160 FTVLRPTIRNLCEYYFEKDPQKIMDLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITLHHGNSPP 239 (299)
T ss_pred EEEeCCCHHHHHHHHhhcChHHHhccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEEeeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcCCCHHHHHhhh--ccccccccc
Q 012978 246 PMDIVRIFNFSNEICKSIV--RASVSDVTS 273 (452)
Q Consensus 246 ~~~~~~~~nf~~~~~~~~~--~~~l~~l~~ 273 (452)
+++++++|||+.+....+. ..++..+.+
T Consensus 240 ~~~~l~~~nf~~~~~~~~~~~~~~l~~l~~ 269 (299)
T PF04189_consen 240 NLDILKYFNFDEENLSSIHPLNFNLKTLSW 269 (299)
T ss_pred CHHHHHhCCCChhccccccccchhhhhhhh
Confidence 9999999999999988877 556666643
No 3
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-40 Score=313.52 Aligned_cols=255 Identities=21% Similarity=0.336 Sum_probs=214.5
Q ss_pred CccCCCEEEEEeCCCCeEEEEEEccCCEEEEcceeeecCCccCCCCCcEEEEeCCCCCCCccccCCCCcchhhhhhhhhc
Q 012978 16 LTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQI 95 (452)
Q Consensus 16 ~i~eGd~Vll~~~~g~~~~~v~l~~~~~v~~gK~~f~~~~lIG~pyG~~fei~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (452)
.+++||.|+|...+++++ ++++.+++++++.+|.|+++++||+|||+...++.|..+.++. |
T Consensus 1 ~~~~gd~vlL~~~~~~~~-lv~~~~~~~~~t~~G~i~~~~vigk~~G~~i~s~~G~~f~vl~---p-------------- 62 (256)
T COG2519 1 PFKEGDPVLLTDERGRRY-LVRLTPGEKFHTDLGIIPHDEVIGKPYGEVIKSHLGVKFYVLK---P-------------- 62 (256)
T ss_pred CCCCCCeEEEEecCCcEE-EEeccCCcccccceeeechhhhcCCCCCceEEeeCCceEEEeC---C--------------
Confidence 378999999999987544 8999999999999999999999999999999999987766532 2
Q ss_pred cccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhccccccccccccHHHHHHHhhhccCCcEEEeCCChHH
Q 012978 96 SGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARS 175 (452)
Q Consensus 96 ~~~~~dNr~i~Dd~~~QkLs~eeI~~lK~~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~~~i~~pt~~~ 175 (452)
.-.+.+..|||. .||+
T Consensus 63 ------------------~~~d~~~~~~R~----------------------------------------tQiI------ 78 (256)
T COG2519 63 ------------------TPEDYLLSMKRR----------------------------------------TQII------ 78 (256)
T ss_pred ------------------CHHHHHHhCcCC----------------------------------------Ccee------
Confidence 112335566664 3666
Q ss_pred HHHHHHhcCcccccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCC
Q 012978 176 ICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (452)
Q Consensus 176 l~e~y~~Kdp~Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf 255 (452)
|+||. |+|+.++||.||+||++++++||.||+++|+.+|+.|+|++++...
T Consensus 79 -----yPKD~-----------~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~------------- 129 (256)
T COG2519 79 -----YPKDA-----------GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE------------- 129 (256)
T ss_pred -----cCCCH-----------HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH-------------
Confidence 99995 9999999999999999999999999999999999999999998853
Q ss_pred CHHHHHhhhccccccccccCcCcccchhhhhhhhhhcccccccCCCCcccccccccccccchhhhhcCCCcccccccccc
Q 012978 256 SNEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHK 335 (452)
Q Consensus 256 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 335 (452)
++.+.+.. |++.+. ..+
T Consensus 130 --d~~k~A~~-Nl~~~~------------------------------------------l~d------------------ 146 (256)
T COG2519 130 --DFAKTARE-NLSEFG------------------------------------------LGD------------------ 146 (256)
T ss_pred --HHHHHHHH-HHHHhc------------------------------------------ccc------------------
Confidence 45554433 555431 000
Q ss_pred ccccchHHHHHHhhhcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeee
Q 012978 336 VGEKASQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWL 415 (452)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~l 415 (452)
++.....|+.+...+..||++|+++| |||++|+++...|+||+.+|+||||.||+.+++..|++. +|++++..|+..
T Consensus 147 ~v~~~~~Dv~~~~~~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~-g~~~ie~~E~l~ 223 (256)
T COG2519 147 RVTLKLGDVREGIDEEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER-GFVDIEAVETLV 223 (256)
T ss_pred ceEEEeccccccccccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-Cccchhhheeee
Confidence 01122345555666669999999998 999999999999999999999999999999999999987 799999999999
Q ss_pred eeeeecCCCCCCCCcccCceEEEEEEEEecCC
Q 012978 416 REYQVLPSRTHPCMQMSGCGGYILSGTRTATN 447 (452)
Q Consensus 416 R~yQVLP~RTHP~m~m~~~~GyiLsg~kv~~~ 447 (452)
|+|+|.+++|||...|.+|+|||++|+++...
T Consensus 224 R~~~v~~~~~RP~~~~v~HTgyivf~R~~~~~ 255 (256)
T COG2519 224 RRWEVRKEATRPETRMVGHTGYIVFARKLGGE 255 (256)
T ss_pred heeeecccccCcccccccceeEEEEEeeccCC
Confidence 99999999999999999999999999998653
No 4
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.95 E-value=2.7e-27 Score=230.03 Aligned_cols=173 Identities=20% Similarity=0.313 Sum_probs=120.4
Q ss_pred cEEEeCCChHHHH-------HHHHhcCcccccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEE
Q 012978 165 KVLLRRPFARSIC-------EAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCN 237 (452)
Q Consensus 165 ~~~i~~pt~~~l~-------e~y~~Kdp~Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~ 237 (452)
++-|++||+.+.. ++.|+|| +|+|++++||+||++||+++++||.||.+++..+|+.|+|++
T Consensus 2 ~v~vl~Pt~e~~~~~l~rrtQIiYpkD-----------~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t 70 (247)
T PF08704_consen 2 FVYVLRPTPELWTLSLPRRTQIIYPKD-----------ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYT 70 (247)
T ss_dssp --------HHHHHHTS-SSS----HHH-----------HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEE
T ss_pred CccccchhHHHHHHhccCCcceeeCch-----------HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEc
Confidence 4578999988764 3667777 699999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhcCCCHHHHHhhhccccccccccCcCcccchhhhhhhhhhcccccccCCCCcccccccccccccch
Q 012978 238 TCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSD 317 (452)
Q Consensus 238 ~~~~~~~~~~~~~~~~nf~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (452)
++..+ +..+.+.. ++.... ..+
T Consensus 71 ~E~~~---------------~~~~~A~~-n~~~~g------------------------------------------l~~ 92 (247)
T PF08704_consen 71 YEFRE---------------DRAEKARK-NFERHG------------------------------------------LDD 92 (247)
T ss_dssp EESSH---------------HHHHHHHH-HHHHTT------------------------------------------CCT
T ss_pred cccCH---------------HHHHHHHH-HHHHcC------------------------------------------CCC
Confidence 98643 33333322 332220 000
Q ss_pred hhhhcCCCccccccccccccccchHHHH-HHh---hhcCcceEEEeCCCCChHHHHHhHHhcc-cCCCcEEEEeCChHHH
Q 012978 318 LILEANHSPVNKISKSHKVGEKASQETL-KLW---KENGFSSMIVVAPELDPWSFVKDLLPLL-SYSAPFAIYHQYLQPL 392 (452)
Q Consensus 318 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~-~~~---~~~~~D~liia~~~~dP~~il~~ll~~L-~pS~p~VVYsp~~epL 392 (452)
.+....+++. +.+ .+..+|++|+|.| +||++|+++.+.| ++||.|++|||++||+
T Consensus 93 ------------------~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp--~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv 152 (247)
T PF08704_consen 93 ------------------NVTVHHRDVCEEGFDEELESDFDAVFLDLP--DPWEAIPHAKRALKKPGGRICCFSPCIEQV 152 (247)
T ss_dssp ------------------TEEEEES-GGCG--STT-TTSEEEEEEESS--SGGGGHHHHHHHE-EEEEEEEEEESSHHHH
T ss_pred ------------------CceeEecceecccccccccCcccEEEEeCC--CHHHHHHHHHHHHhcCCceEEEECCCHHHH
Confidence 0011111111 111 1368999999998 9999999999999 8999999999999999
Q ss_pred HHHHHHHHhccCccceeeeeeeeeeeeecCCCCCC
Q 012978 393 ATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHP 427 (452)
Q Consensus 393 ~e~~~~L~~~~~~v~l~l~E~~lR~yQVLP~RTHP 427 (452)
++++.+|++. +|.++++.|+..|+|.|.|.+++|
T Consensus 153 ~~~~~~L~~~-gf~~i~~~Evl~R~~~v~~~~~~~ 186 (247)
T PF08704_consen 153 QKTVEALREH-GFTDIETVEVLLREWEVRPRRLRP 186 (247)
T ss_dssp HHHHHHHHHT-TEEEEEEEEEEEEEEEEETCG--B
T ss_pred HHHHHHHHHC-CCeeeEEEEEEeeEEEEEecccCC
Confidence 9999999986 499999999999999999988764
No 5
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.8e-25 Score=211.92 Aligned_cols=231 Identities=18% Similarity=0.247 Sum_probs=175.0
Q ss_pred CCCCccCCCEEEEEeCCCCeEEEEEEccCCEEEEcceeeecCCccCCCCCcEEEEeCCCCCCCccccCCCCcchhhhhhh
Q 012978 13 NAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKED 92 (452)
Q Consensus 13 ~~~~i~eGd~Vll~~~~g~~~~~v~l~~~~~v~~gK~~f~~~~lIG~pyG~~fei~~~~~~~~~~~~~~~~d~~~~~~~~ 92 (452)
-.+.|++||.||+.+.-|. ++.++|.+++.++..-|.|++.++||+|||+......|+++.++ .|..
T Consensus 9 yk~~ie~GDlvi~~~~~~~-m~p~~v~r~~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~vylL---~PTp--------- 75 (314)
T KOG2915|consen 9 YKRRIEEGDLVIAYVGRGE-MKPVKVFREGTFQTRYGALPHSDIIGKPYGSKVASSKGKFVYLL---QPTP--------- 75 (314)
T ss_pred hhhhcccCCEEEEEEccCc-eEEEEEeccceeeccccccchhheecCCccceeeecCCcEEEEe---cCCh---------
Confidence 3467999999999999874 66999999999988889999999999999999999888877653 2311
Q ss_pred hhccccccCccccccCcccccCCHHH-HHHHHHcCCChHHHHHHHHhccccccccccccHHHHHHHhhhccCCcEEEeCC
Q 012978 93 AQISGEFRDNRAIVDDNKAQCLSGED-IDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP 171 (452)
Q Consensus 93 ~~~~~~~~dNr~i~Dd~~~QkLs~ee-I~~lK~~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~~~i~~p 171 (452)
|. -..|+. |.||+
T Consensus 76 ------------------------ELWTl~Lph----------------------------------------RTQI~-- 89 (314)
T KOG2915|consen 76 ------------------------ELWTLALPH----------------------------------------RTQIL-- 89 (314)
T ss_pred ------------------------HHhhhhccC----------------------------------------cceEE--
Confidence 11 223332 45776
Q ss_pred ChHHHHHHHHhcCcccccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCCchhhhh
Q 012978 172 FARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVR 251 (452)
Q Consensus 172 t~~~l~e~y~~Kdp~Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~ 251 (452)
|.+| +|||+++.+|+||++|++.+++||-+.-|++..+|+.|++++++--+.
T Consensus 90 ---------Yt~D-----------ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~-------- 141 (314)
T KOG2915|consen 90 ---------YTPD-----------IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHET-------- 141 (314)
T ss_pred ---------eccc-----------HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHH--------
Confidence 9999 699999999999999999999999999999999999999999865110
Q ss_pred hcCCCHHHHHhhhccccccccccCcCcccchhhhhhhhhhcccccccCCCCcccccccccccccchhhhhcCCCcccccc
Q 012978 252 IFNFSNEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKIS 331 (452)
Q Consensus 252 ~~nf~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (452)
-.+. .+..+. +++..++
T Consensus 142 -------Ra~k----a~eeFr---------------------------------------~hgi~~~------------- 158 (314)
T KOG2915|consen 142 -------RAEK----ALEEFR---------------------------------------EHGIGDN------------- 158 (314)
T ss_pred -------HHHH----HHHHHH---------------------------------------HhCCCcc-------------
Confidence 0000 111110 0000000
Q ss_pred ccccccccchHHHH---HHhhhcCcceEEEeCCCCChHHHHHhHHhcccCCC-cEEEEeCChHHHHHHHHHHHhccCccc
Q 012978 332 KSHKVGEKASQETL---KLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSA-PFAIYHQYLQPLATCMHSLQVRKMAIG 407 (452)
Q Consensus 332 k~~~~~~~~~~~~~---~~~~~~~~D~liia~~~~dP~~il~~ll~~L~pS~-p~VVYsp~~epL~e~~~~L~~~~~~v~ 407 (452)
+....+++. ....++.+|+++++.| .||.+|+++.+.|+-+| .|+.|||++||++.++..|++. +|+.
T Consensus 159 -----vt~~hrDVc~~GF~~ks~~aDaVFLDlP--aPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~-gf~~ 230 (314)
T KOG2915|consen 159 -----VTVTHRDVCGSGFLIKSLKADAVFLDLP--APWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSL-GFIE 230 (314)
T ss_pred -----eEEEEeecccCCccccccccceEEEcCC--ChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhC-CCce
Confidence 000011111 1222578999999998 89999999999999655 8999999999999999999974 6999
Q ss_pred eeeeeeee-eeeeec
Q 012978 408 LQISEPWL-REYQVL 421 (452)
Q Consensus 408 l~l~E~~l-R~yQVL 421 (452)
+.+.|.|+ |.|-|+
T Consensus 231 i~~vEv~~~qk~~V~ 245 (314)
T KOG2915|consen 231 IETVEVLLVQKNGVK 245 (314)
T ss_pred EEEEEeehhhhhcee
Confidence 99999999 666654
No 6
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.64 E-value=1.5e-06 Score=82.06 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=114.7
Q ss_pred hhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCHHHHHhhhcccccccc
Q 012978 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVT 272 (452)
Q Consensus 193 ~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~~~~~~~~~~~l~~l~ 272 (452)
.+.=+..|...++.+|++||.++.++|.++.+++.++|+.|+|+.++... +..+.+.. ++..+.
T Consensus 26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~---------------~~~~~a~~-n~~~~g 89 (198)
T PRK00377 26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE---------------KAINLTRR-NAEKFG 89 (198)
T ss_pred HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH---------------HHHHHHHH-HHHHhC
Confidence 34446667778999999999999999999999999999889999998632 22221111 111110
Q ss_pred ccCcCcccchhhhhhhhhhcccccccCCCCcccccccccccccchhhhhcCCCccccccccccccccchHHHHHHhhhcC
Q 012978 273 SQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENG 352 (452)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 352 (452)
... ...-.. -...+.+..+ ...
T Consensus 90 -~~~-------------------------------------~v~~~~-------------------~d~~~~l~~~-~~~ 111 (198)
T PRK00377 90 -VLN-------------------------------------NIVLIK-------------------GEAPEILFTI-NEK 111 (198)
T ss_pred -CCC-------------------------------------CeEEEE-------------------echhhhHhhc-CCC
Confidence 000 000000 0000111111 247
Q ss_pred cceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeeeeeeeecCCCCCCCCccc
Q 012978 353 FSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMS 432 (452)
Q Consensus 353 ~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~lR~yQVLP~RTHP~m~m~ 432 (452)
||.+++.....++..++..+...|+|+|.||++....+.+.+++..|+..+ | ++.+.+...+.-+.+++-|+ ...
T Consensus 112 ~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g-~-~~~~~~~~~~~~~~~~~~~~---~~~ 186 (198)
T PRK00377 112 FDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIG-F-NLEITEVIIAKGMKTKVGTA---MMT 186 (198)
T ss_pred CCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcC-C-CeEEEEEehhhcccccCCcE---eec
Confidence 999888543457999999999999999999999999999999999998654 6 88999888877776665332 112
Q ss_pred CceEEEEEEEE
Q 012978 433 GCGGYILSGTR 443 (452)
Q Consensus 433 ~~~GyiLsg~k 443 (452)
..+=||++|.|
T Consensus 187 ~npv~~~~~~~ 197 (198)
T PRK00377 187 RNPIFIISGEK 197 (198)
T ss_pred CCCEEEEEEec
Confidence 25667777654
No 7
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=98.28 E-value=1.2e-06 Score=64.75 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=35.9
Q ss_pred CCCccCCCEEEEEeCCCCeEEEEEEccCCEEEEcceeeecCCccCCCCCcEE
Q 012978 14 AQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLF 65 (452)
Q Consensus 14 ~~~i~eGd~Vll~~~~g~~~~~v~l~~~~~v~~gK~~f~~~~lIG~pyG~~f 65 (452)
...+++||.|.|..+.|++. -+.|++|+.+++.+|.|.+|+|||+|.|++.
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr~~-Ti~L~~G~~fhThrG~i~HDdlIG~~eGsVV 53 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGRKH-TITLEPGGEFHTHRGAIRHDDLIGRPEGSVV 53 (54)
T ss_dssp --S--TT-EEEEEETT--EE-EEE--TT-EEEETTEEEEHHHHTT--TTEEE
T ss_pred cCCCCCCCEEEEccCCCCee-eEEECCCCeEEcCccccchhheecCCCcEEe
Confidence 45688999999999998655 7789999999999999999999999999864
No 8
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.06 E-value=0.00013 Score=67.91 Aligned_cols=168 Identities=11% Similarity=0.039 Sum_probs=110.4
Q ss_pred cchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCHHHHHhhhcccccc
Q 012978 191 LRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSD 270 (452)
Q Consensus 191 lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~~~~~~~~~~~l~~ 270 (452)
...+.-+.++.+..+.++.++|.+++++|.++.+++.+ ++.++|+.++... +.++.+.. ++..
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~---------------~~~~~a~~-n~~~ 77 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQ-FPSLQVTAIERNP---------------DALRLIKE-NRQR 77 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHH-CCCCEEEEEECCH---------------HHHHHHHH-HHHH
Confidence 33444466677788899999999999999999999876 5668899887632 22221111 1111
Q ss_pred ccccCcCcccchhhhhhhhhhcccccccCCCCcccccccccccccchhhhhcCCCccccccccccccccchHHHHHHhhh
Q 012978 271 VTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKE 350 (452)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 350 (452)
.. .. . . .....+....+ .
T Consensus 78 ~~-~~--------------------------------------~---i-------------------~~~~~d~~~~~-~ 95 (187)
T PRK08287 78 FG-CG--------------------------------------N---I-------------------DIIPGEAPIEL-P 95 (187)
T ss_pred hC-CC--------------------------------------C---e-------------------EEEecCchhhc-C
Confidence 00 00 0 0 00000000011 2
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeeeeeeeecCC--CCCCC
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPS--RTHPC 428 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~lR~yQVLP~--RTHP~ 428 (452)
+.||.++++....+...++..+...|+|+|.|++.....+...++...|++. +|..+++.+.+++.|..+-. +.-|.
T Consensus 96 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK08287 96 GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKC-GVSELDCVQLQVSSLTPLGAGHYFKPN 174 (187)
T ss_pred cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHC-CCCcceEEEEEEEeeeEcCcceeeccC
Confidence 4789888765334578899999999999999988777777778888888764 59999999999999988743 22232
Q ss_pred CcccCceEEEEEEEE
Q 012978 429 MQMSGCGGYILSGTR 443 (452)
Q Consensus 429 m~m~~~~GyiLsg~k 443 (452)
..=|+++|++
T Consensus 175 -----~~~~~~~~~~ 184 (187)
T PRK08287 175 -----NPTFIISCQK 184 (187)
T ss_pred -----CCEEEEEEEc
Confidence 3457777777
No 9
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.97 E-value=0.00041 Score=64.91 Aligned_cols=130 Identities=13% Similarity=0.060 Sum_probs=96.3
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCHHHHHhhhccccccccccC
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVTSQS 275 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~~~~~~~~~~~l~~l~~~~ 275 (452)
=+..|+...+++|++++-++.|+|-++--++ ++|..|+||.++..+ +..+.+.+ |...+. ..
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~---------------~a~~~~~~-N~~~fg-~~ 84 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDE---------------EALELIER-NAARFG-VD 84 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCH---------------HHHHHHHH-HHHHhC-CC
Confidence 3888999999999999999999999999999 999999999998732 33333322 443331 00
Q ss_pred cCcccchhhhhhhhhhcccccccCCCCcccccccccccccchhhhhcCCCccccccccccccccchHHHHHHhhh-cCcc
Q 012978 276 ETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKE-NGFS 354 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~-~~~D 354 (452)
+.. ....++-+.+.. ..+|
T Consensus 85 --------------------------------------n~~----------------------vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 85 --------------------------------------NLE----------------------VVEGDAPEALPDLPSPD 104 (187)
T ss_pred --------------------------------------cEE----------------------EEeccchHhhcCCCCCC
Confidence 000 000011111211 2699
Q ss_pred eEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccC
Q 012978 355 SMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKM 404 (452)
Q Consensus 355 ~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~ 404 (452)
++||--. -+-..+++.++.+|+|+|.+|+=.-+.|-+..+..+|++.+.
T Consensus 105 aiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 105 AIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred EEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 9999875 678899999999999999999999999999999999998664
No 10
>PLN02476 O-methyltransferase
Probab=97.93 E-value=6.1e-05 Score=75.01 Aligned_cols=61 Identities=18% Similarity=0.073 Sum_probs=52.8
Q ss_pred HhcCcccccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 181 FKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 181 ~~Kdp~Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
-..++..++.+.+|....+..++.+....++|+++++.|.-+.+++..|+..|+|+.++..
T Consensus 92 a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d 152 (278)
T PLN02476 92 TSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERD 152 (278)
T ss_pred HHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECC
Confidence 3344444667899999999999999999999999999999999999999999999999874
No 11
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.87 E-value=0.001 Score=62.48 Aligned_cols=171 Identities=14% Similarity=0.107 Sum_probs=103.5
Q ss_pred chhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCHHHHHhhhccccccc
Q 012978 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDV 271 (452)
Q Consensus 192 R~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~~~~~~~~~~~l~~l 271 (452)
..+.-+.++.+.++.+|++||.++.+.|.++..++.+ ++.+.|+.++... +..+.+.. ++..+
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~---------------~~~~~a~~-n~~~~ 87 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDE---------------EVVNLIRR-NCDRF 87 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCH---------------HHHHHHHH-HHHHh
Confidence 3334456888889999999999999999999988754 5558899887632 22222211 11111
Q ss_pred cccCcCcccchhhhhhhhhhcccccccCCCCcccccccccccccchhhhhcCCCccccccccccccccchHHHHHHhhhc
Q 012978 272 TSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKEN 351 (452)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 351 (452)
. .. +. ... .-...+..+.+ ..
T Consensus 88 ~-~~--------------------------------------~v-~~~------------------~~d~~~~~~~~-~~ 108 (196)
T PRK07402 88 G-VK--------------------------------------NV-EVI------------------EGSAPECLAQL-AP 108 (196)
T ss_pred C-CC--------------------------------------Ce-EEE------------------ECchHHHHhhC-CC
Confidence 0 00 00 000 00000111111 12
Q ss_pred CcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeeeeeeeecCCCCCCCCcc
Q 012978 352 GFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQM 431 (452)
Q Consensus 352 ~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~lR~yQVLP~RTHP~m~m 431 (452)
.+|.++++.. .+...++..+...|+|+|.|+++.+..+.+.++...++.. ..-+.++.+.-.|.+.++-+-+ |..
T Consensus 109 ~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~ 183 (196)
T PRK07402 109 APDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL-QARNIEVVQAAVNRLETRGFSQ---VFA 183 (196)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc-CCCCceEEEEEhhhcccccCcC---eee
Confidence 4677777763 3456899999999999999999999999988888887653 3445566666566555543211 222
Q ss_pred cCceEEEEEEEE
Q 012978 432 SGCGGYILSGTR 443 (452)
Q Consensus 432 ~~~~GyiLsg~k 443 (452)
...-=||+++.|
T Consensus 184 ~~~pv~~~~~~~ 195 (196)
T PRK07402 184 AVDPIFILSGEK 195 (196)
T ss_pred cCCCEEEEEEEe
Confidence 334456777665
No 12
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.73 E-value=4.4e-05 Score=73.06 Aligned_cols=95 Identities=20% Similarity=0.372 Sum_probs=64.7
Q ss_pred HHHHHHcC-CChHHHHHHHHhccccccccccccHHHHHHHhhhccCCcEEEeCCChHHHHHHHHhcCccccc----ccch
Q 012978 119 IDEMRRQG-ATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIG----FLRV 193 (452)
Q Consensus 119 I~~lK~~g-~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~~~i~~pt~~~l~e~y~~Kdp~Ki~----~lR~ 193 (452)
|+.|++.| ++...|++.+.+=- +-.|=.+.| +..- |.-.|-.|. -..+
T Consensus 6 v~~l~~~g~v~~~~v~~A~~~Vp-----R~~Fvp~~~---~~~a-------------------Y~d~~l~i~~~~~is~P 58 (209)
T PF01135_consen 6 VDNLIRPGDVTDPRVLDAFRAVP-----REDFVPPAF---RDLA-------------------YEDRPLPIGCGQTISAP 58 (209)
T ss_dssp HHHHHHTTSS-SHHHHHHHHHS------GGGCSSCGG---GGGT-------------------TSSS-EEEETTEEE--H
T ss_pred HHHHHHcCCCCCHHHHHHHHhCC-----HHHhCchhh---hcCC-------------------CCCCCeeecceeechHH
Confidence 67888888 78888888887642 222222211 1122 222232222 3568
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
...|.||.++.++||.+||.+++++|..||.++..+|..|+|+.++.
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~ 105 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVER 105 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEES
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECc
Confidence 89999999999999999999999999999999999999999999986
No 13
>PRK04266 fibrillarin; Provisional
Probab=97.72 E-value=0.00034 Score=67.75 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=41.3
Q ss_pred hhHHHHHHH---hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 193 VDMLSLLLS---MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 193 ~DtLa~iL~---~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
+...+.||+ +.++++|++||.++.+.|.++..++++++ .|+|+.++..
T Consensus 55 ~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~ 105 (226)
T PRK04266 55 SKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFA 105 (226)
T ss_pred cchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECC
Confidence 344577776 68999999999999999999999999997 8899999763
No 14
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.70 E-value=9.8e-05 Score=70.52 Aligned_cols=97 Identities=21% Similarity=0.385 Sum_probs=68.7
Q ss_pred HHHHHHHHcC-CChHHHHHHHHhccccccccccccHHHHHHHhhhccCCcEEEeCCChHHHHHHHHhcCccccc----cc
Q 012978 117 EDIDEMRRQG-ATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIG----FL 191 (452)
Q Consensus 117 eeI~~lK~~g-~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~~~i~~pt~~~l~e~y~~Kdp~Ki~----~l 191 (452)
+-|+.|++.| +....|++.+..=. +..|-.+.| .+.-|...|-.+. -.
T Consensus 9 ~~v~~~~~~~~v~~~~v~~a~~~v~-----R~~f~~~~~----------------------~~~~y~d~~~~~~~~~~~~ 61 (215)
T TIGR00080 9 ALIDKLINEGYIKSKRVIDALLSVP-----REEFVPEHF----------------------KEYAYVDTPLEIGYGQTIS 61 (215)
T ss_pred HHHHHHHhcCCcCCHHHHHHHHhCC-----hhhhCCchh----------------------HhhCcCCCCcccCCCCEec
Confidence 4477888887 67788888876532 223333322 1122333443332 23
Q ss_pred chhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 192 R~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.+.+.+.|+.++++.+|.+||.+++++|.+++.++++.+..|.|+.++.
T Consensus 62 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~ 110 (215)
T TIGR00080 62 APHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIER 110 (215)
T ss_pred hHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeC
Confidence 3556789999999999999999999999999999998887899999876
No 15
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.54 E-value=0.00049 Score=66.91 Aligned_cols=53 Identities=17% Similarity=0.071 Sum_probs=45.8
Q ss_pred cccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 189 GFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 189 ~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
+.+-++....+..++.+..+.+||+++++.|.-+.+++..+++.|+|+.++..
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d 102 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDID 102 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECC
Confidence 34566776777788888889999999999999999999999999999999874
No 16
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.47 E-value=0.002 Score=68.96 Aligned_cols=46 Identities=22% Similarity=0.145 Sum_probs=38.8
Q ss_pred HHHHHH-hc--CCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 196 LSLLLS-MG--NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 196 La~iL~-~a--nI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
-||+.. .. ++.||.+||-+...-|--|..++++|++.|.|+..+..
T Consensus 99 sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~ 147 (470)
T PRK11933 99 SSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYS 147 (470)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCC
Confidence 455433 34 88999999999999999999999999999999988763
No 17
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.44 E-value=0.00047 Score=65.90 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=47.4
Q ss_pred ccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 190 FLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 190 ~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
-..+...+.|+.++++++|.+||.+++++|.+++.+++++|..|+|+.++..
T Consensus 59 ~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~ 110 (212)
T PRK13942 59 ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERI 110 (212)
T ss_pred eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCC
Confidence 3667888999999999999999999999999999999999988999999873
No 18
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00033 Score=66.71 Aligned_cols=96 Identities=20% Similarity=0.331 Sum_probs=68.2
Q ss_pred HHHHHHcCCChHHHHHHHHhccccccccccccHHHHHHHhhhccCCcEEEeCCChHHHHHHHHhcCcccccccchhHHHH
Q 012978 119 IDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198 (452)
Q Consensus 119 I~~lK~~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~~~i~~pt~~~l~e~y~~Kdp~Ki~~lR~DtLa~ 198 (452)
.++|+..|++-..+.+.+..-- +..|--+-| |..-|......+- .=..-..+++.|.
T Consensus 7 ~~~lr~~~i~~~~v~~A~~~vP-----Re~FVp~~~---~~~AY~d~~lpi~---------------~gqtis~P~~vA~ 63 (209)
T COG2518 7 VERLRTEGITDERVLKAFLAVP-----RELFVPAAY---KHLAYEDRALPIG---------------CGQTISAPHMVAR 63 (209)
T ss_pred HHHHHHcCCCcHHHHHHHHhCC-----HHhccCchh---hcccccCCcccCC---------------CCceecCcHHHHH
Confidence 4567778877777777777653 566666666 3333333322221 1112356788999
Q ss_pred HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
|+.+..+++|.+||++++++|.-+|.|++..| +|++++.
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr 102 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIER 102 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEE
Confidence 99999999999999999999999888877654 9999986
No 19
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.31 E-value=0.0033 Score=66.71 Aligned_cols=46 Identities=30% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHH-HhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 196 LSLLL-SMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 196 La~iL-~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
-++++ .+.++.+|.+||.++.+.|..+.++++++++.|.|+.++..
T Consensus 238 ~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~ 284 (444)
T PRK14902 238 SSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIH 284 (444)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCC
Confidence 34444 36788999999999999999999999999888999998763
No 20
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.31 E-value=0.0033 Score=60.61 Aligned_cols=118 Identities=18% Similarity=0.174 Sum_probs=84.7
Q ss_pred hhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCHHHHHhhhcccccccc
Q 012978 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVT 272 (452)
Q Consensus 193 ~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~~~~~~~~~~~l~~l~ 272 (452)
+++-..+..++-.....++|++++.-|.-+.+||..+..+|+|+.++.. ++..+.. +.+++...
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~---------------~e~~~~A-~~n~~~ag 108 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERD---------------EERAEIA-RENLAEAG 108 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCC---------------HHHHHHH-HHHHHHcC
Confidence 7777888888888889999999999999999999999989999999873 2333333 22444321
Q ss_pred ccCcCcccchhhhhhhhhhcccccccCCCCcccccccccccccchhhhhcCCCccccccccccccccch-HHHHHHh---
Q 012978 273 SQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKAS-QETLKLW--- 348 (452)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~--- 348 (452)
..+. ..... .++++.+
T Consensus 109 ------------------------------------------~~~~------------------i~~~~~gdal~~l~~~ 128 (219)
T COG4122 109 ------------------------------------------VDDR------------------IELLLGGDALDVLSRL 128 (219)
T ss_pred ------------------------------------------Ccce------------------EEEEecCcHHHHHHhc
Confidence 0000 01111 1333333
Q ss_pred hhcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEe
Q 012978 349 KENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYH 386 (452)
Q Consensus 349 ~~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYs 386 (452)
..+.||-+||++-.-+-.+.++.++++|+|+|-+|+..
T Consensus 129 ~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 129 LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 34789999999855566788999999999999998654
No 21
>PRK14967 putative methyltransferase; Provisional
Probab=97.31 E-value=0.00068 Score=65.09 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 195 MLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 195 tLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.|+.++...++.+|++||.++.+.|.++.+++.. | .++|+.++.
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~ 67 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDI 67 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEEC
Confidence 4666677778999999999999999998888764 3 457887765
No 22
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.22 E-value=0.0024 Score=62.73 Aligned_cols=54 Identities=17% Similarity=0.061 Sum_probs=45.7
Q ss_pred ccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 188 i~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
++.+.++....+..++....-.++|+++++.|.-|.++++.++.+|+|+.++..
T Consensus 60 ~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~ 113 (247)
T PLN02589 60 IMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN 113 (247)
T ss_pred CCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC
Confidence 455567777777777777777899999999999999999999999999999873
No 23
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0006 Score=64.76 Aligned_cols=55 Identities=27% Similarity=0.353 Sum_probs=46.8
Q ss_pred hcCccccc-ccc---hhHHHHHHHhcC--CCCCCeEEEEeCCCcHHHHHHHHHhCCCceEE
Q 012978 182 KKNPARIG-FLR---VDMLSLLLSMGN--VAANSDVLVVDMAGGLLTGAVAERLGGTGYVC 236 (452)
Q Consensus 182 ~Kdp~Ki~-~lR---~DtLa~iL~~an--I~~g~rvLv~d~~~GlltaAv~ermgg~G~v~ 236 (452)
.--|.+|. +++ +++-|-+|-+.. ++||.+.|-+++++|.||+.++.-+|+.|.+.
T Consensus 51 ~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~ 111 (237)
T KOG1661|consen 51 MDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNV 111 (237)
T ss_pred CCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccc
Confidence 33567888 676 466788888888 89999999999999999999999999999863
No 24
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.20 E-value=0.0017 Score=61.67 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=44.2
Q ss_pred hhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 193 ~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
+..++.|+.+.++.+|.+||.+++++|.+++.++++++..|+|+.++..
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~ 106 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIV 106 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCC
Confidence 4567899999999999999999999999999999999878899988763
No 25
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.15 E-value=0.0015 Score=62.48 Aligned_cols=55 Identities=18% Similarity=0.086 Sum_probs=42.7
Q ss_pred cccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 187 RIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 187 Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
..+.+.++.-..+-.++....-.+||+++++.|.-|.++|+.+...|+|+.++..
T Consensus 25 ~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~ 79 (205)
T PF01596_consen 25 PQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEID 79 (205)
T ss_dssp GGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESS
T ss_pred CCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCc
Confidence 3445566665555555555556899999999999999999999999999999873
No 26
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.98 E-value=0.015 Score=54.21 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=41.9
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
..+...-.+..+++|.+||+++.+.|.++.+++.++++.|+|+.++..
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis 66 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQ 66 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecc
Confidence 345677778899999999999999999999999999888899998764
No 27
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.95 E-value=0.011 Score=62.42 Aligned_cols=46 Identities=22% Similarity=0.056 Sum_probs=38.1
Q ss_pred hHHHHHH-HhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 194 DMLSLLL-SMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 194 DtLa~iL-~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
|.-|++. .+.++.+|.+||.++.+.|..+..+++++++ |.|+.++.
T Consensus 230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~ 276 (427)
T PRK10901 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDI 276 (427)
T ss_pred CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeC
Confidence 3344444 3778999999999999999999999999866 89998876
No 28
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.91 E-value=0.0062 Score=64.54 Aligned_cols=49 Identities=22% Similarity=0.148 Sum_probs=41.7
Q ss_pred hhHHHHHHH-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 193 VDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 193 ~DtLa~iL~-~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
.|.-||++. +.++.+|.+||.+..+.|-.|.+++++|++.|.|+.++..
T Consensus 222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis 271 (431)
T PRK14903 222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDIS 271 (431)
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECC
Confidence 344566654 5789999999999999999999999999999999999763
No 29
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.89 E-value=0.0095 Score=58.89 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=38.7
Q ss_pred HHHHH-HhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLL-SMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL-~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
-|++. ...++++|.+||.+..+.|..|..++++|+..|.|+.++.
T Consensus 59 ~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~ 104 (264)
T TIGR00446 59 SSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEF 104 (264)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcC
Confidence 55543 3468999999999999999999999999998899998876
No 30
>PTZ00146 fibrillarin; Provisional
Probab=96.88 E-value=0.0087 Score=60.11 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=35.5
Q ss_pred cCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 203 GNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 203 anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.+|.+|++||.++.+.|..|..++.++|..|.||.++.
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~ 165 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEF 165 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEEC
Confidence 46899999999999999999999999999999999975
No 31
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.86 E-value=0.0084 Score=56.92 Aligned_cols=93 Identities=16% Similarity=0.231 Sum_probs=62.5
Q ss_pred HHHHHHHcCCChHHHHHHHHhccccccccccccHHHHHHHhhhccCCcEEEeCCChHHHHHHHHhcCcccc----cccch
Q 012978 118 DIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARI----GFLRV 193 (452)
Q Consensus 118 eI~~lK~~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~~~i~~pt~~~l~e~y~~Kdp~Ki----~~lR~ 193 (452)
=++.|+..|.....+++.+-.-. +..|-.+.| .+.-|...+--+ ....+
T Consensus 12 ~v~~l~~~~~~~~~~~~a~~~~~-----r~~f~p~~~----------------------~~~ay~d~~~~~~~~~~~~~p 64 (212)
T PRK00312 12 LVLRLRAEGILDERVLEAIEATP-----RELFVPEAF----------------------KHKAYENRALPIGCGQTISQP 64 (212)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCC-----HhHcCCchH----------------------HhcCccCCCccCCCCCeeCcH
Confidence 36688888888888888877643 111211111 111133222222 24678
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+..+.|+.++.+.+|.+||.+++++|.++..++... +.|+.++.
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~ 108 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVER 108 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeC
Confidence 888999999999999999999999999998777653 47887765
No 32
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.80 E-value=0.013 Score=62.18 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=41.3
Q ss_pred hhHHHHHHH-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 193 VDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 193 ~DtLa~iL~-~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.|..++++. +.++.+|.+||.+..+.|..|..++++|++.|.|+.++.
T Consensus 237 qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~ 285 (434)
T PRK14901 237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDR 285 (434)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcC
Confidence 345666665 478999999999999999999999999999999999876
No 33
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.78 E-value=0.017 Score=54.80 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=45.9
Q ss_pred hhcCcceEEEeCCCCChH-------------HHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCcc
Q 012978 349 KENGFSSMIVVAPELDPW-------------SFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAI 406 (452)
Q Consensus 349 ~~~~~D~liia~~~~dP~-------------~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v 406 (452)
..+.||.+++..+ +|| .++..+...|+|+|.|++.++..+.+.++...+++.+-.+
T Consensus 108 ~~~~~D~V~~~~~--~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 108 PDGSLDRIYLNFP--DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred CccccceEEEECC--CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccc
Confidence 3467998887654 554 5799999999999999999999999999999998876433
No 34
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.78 E-value=0.0098 Score=60.68 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=45.0
Q ss_pred chhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 192 R~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.+..++.|+.++++++|.+||+++++.|.+++.++++.|..|.|+.++.
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDi 113 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY 113 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEEC
Confidence 5788999999999999999999999999999999999887788998876
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.76 E-value=0.014 Score=57.60 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=36.6
Q ss_pred HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
-+.++++.+|.+||+++.+.|+.+..++.++|..|+|+.+..
T Consensus 69 ~~~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~ 110 (272)
T PRK11873 69 PTALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDM 110 (272)
T ss_pred hhhhccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECC
Confidence 345678999999999999999998888888998899998865
No 36
>PRK14968 putative methyltransferase; Provisional
Probab=96.61 E-value=0.021 Score=52.33 Aligned_cols=38 Identities=11% Similarity=0.067 Sum_probs=31.3
Q ss_pred HHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhcc
Q 012978 366 WSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRK 403 (452)
Q Consensus 366 ~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~ 403 (452)
..++..+..+|+|+|.+++..++.....++...+...+
T Consensus 128 ~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g 165 (188)
T PRK14968 128 DRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLG 165 (188)
T ss_pred HHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCC
Confidence 45789999999999999988888777777888887653
No 37
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.44 E-value=0.04 Score=53.83 Aligned_cols=51 Identities=18% Similarity=0.002 Sum_probs=42.0
Q ss_pred cccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 189 GFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 189 ~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
...|.+....++...+..++.+||.++.+.|.++..++.+. +.+.|+.+..
T Consensus 11 ~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~ 61 (255)
T PRK14103 11 ADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDS 61 (255)
T ss_pred HhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEEC
Confidence 45555567788888899999999999999999999999886 4467887765
No 38
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.38 E-value=0.024 Score=48.09 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.+.++...++.++.++|.++.+.|.++..+++++++ ++|+.++.
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~ 51 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIER 51 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcC
Confidence 456777778999999999999999999999998865 78888875
No 39
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.38 E-value=0.058 Score=57.41 Aligned_cols=45 Identities=22% Similarity=0.075 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 197 a~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
.+...+.++.+|.+||.+..+.|..|..+++++++.|.|+.++..
T Consensus 240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s 284 (445)
T PRK14904 240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRY 284 (445)
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECC
Confidence 344457788999999999999999999999999988999998763
No 40
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.34 E-value=0.027 Score=53.84 Aligned_cols=45 Identities=24% Similarity=0.111 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
-..+|.+.++.+|.+||.++.+.|.++..++++.|+.|.|+.++.
T Consensus 34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~ 78 (231)
T TIGR02752 34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDF 78 (231)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEEC
Confidence 356777889999999999999999999999999998899998876
No 41
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.25 E-value=0.069 Score=50.96 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=38.1
Q ss_pred HHHHHhcC-CCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 197 SLLLSMGN-VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 197 a~iL~~an-I~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
-+|+..-+ +.+|.+||.++.+.|..+-.+++++|..|.|+.++..
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~ 85 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDIL 85 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecc
Confidence 44554445 5899999999999999999999999989999999873
No 42
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.23 E-value=0.029 Score=51.73 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhcc
Q 012978 367 SFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRK 403 (452)
Q Consensus 367 ~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~ 403 (452)
.++..+...|+|+|.|+++.++..++.++...|++.+
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~g 157 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERG 157 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCC
Confidence 4678888999999999999888887889999997653
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.23 E-value=0.18 Score=47.48 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=41.5
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeeeee
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLRE 417 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~lR~ 417 (452)
+.||.++... ..++..++..+.+.|+|+|.|++..+. ....++....+.. .+.+.+.+.-+
T Consensus 111 ~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~~~-~~~~~l~~~~~~~----~~~~~~~~~~~ 171 (187)
T PRK00107 111 EKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLALKGR-DPEEEIAELPKAL----GGKVEEVIELT 171 (187)
T ss_pred CCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEeCC-ChHHHHHHHHHhc----CceEeeeEEEe
Confidence 5799777654 457889999999999999999988654 3445555444432 45555555433
No 44
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.17 E-value=0.052 Score=53.56 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
++.++++.+|.+||.++.+.|.++..+++++|+.|.|+.++.
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~ 106 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDF 106 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEEC
Confidence 455678899999999999999999999999998899998876
No 45
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=95.99 E-value=0.061 Score=50.52 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=48.1
Q ss_pred hcCcceEEEeCCCCChH-------------HHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceee
Q 012978 350 ENGFSSMIVVAPELDPW-------------SFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQI 410 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~-------------~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l 410 (452)
.+.+|.+++..| +|| .++..+...|+|+|.|.+-+....-..++...|...+.|..+..
T Consensus 85 ~~~~d~v~~~~p--dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~ 156 (194)
T TIGR00091 85 DGSLSKVFLNFP--DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSK 156 (194)
T ss_pred CCceeEEEEECC--CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEeccc
Confidence 346999988876 776 58999999999999999999988777888888887776766554
No 46
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.91 E-value=0.076 Score=49.54 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=35.6
Q ss_pred hcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHH
Q 012978 350 ENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQ 400 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~ 400 (452)
.+.||.++..+ -+++..+++.+..+|+|+|.|+++.. ...+.++....+
T Consensus 107 ~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e 155 (181)
T TIGR00138 107 EEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKR 155 (181)
T ss_pred cCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHH
Confidence 35799665544 45678889999999999999998875 345555555543
No 47
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.49 E-value=0.16 Score=49.57 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=33.1
Q ss_pred cccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 187 RIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 187 Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
++..+|.|........=+=-+|.+||-++.++|+|+-.||+ +| -.|+.+..+
T Consensus 39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr-~G--a~VtgiD~s 90 (243)
T COG2227 39 KINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLAR-LG--ASVTGIDAS 90 (243)
T ss_pred eeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHH-CC--CeeEEecCC
Confidence 44445544444333211115899999999999999988875 55 356666553
No 48
>PRK00811 spermidine synthase; Provisional
Probab=95.46 E-value=0.28 Score=49.02 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=40.1
Q ss_pred hcCcceEEEeCCCCCh---------HHHHHhHHhcccCCCcEEEEeC--C--hHHHHHHHHHHHhccCccceee
Q 012978 350 ENGFSSMIVVAPELDP---------WSFVKDLLPLLSYSAPFAIYHQ--Y--LQPLATCMHSLQVRKMAIGLQI 410 (452)
Q Consensus 350 ~~~~D~liia~~~~dP---------~~il~~ll~~L~pS~p~VVYsp--~--~epL~e~~~~L~~~~~~v~l~l 410 (452)
.+.||.+|+++. +| .+.+..+...|+|+|.||+.+. + .+.+...+..|++. |-.+..
T Consensus 148 ~~~yDvIi~D~~--dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~--F~~v~~ 217 (283)
T PRK00811 148 ENSFDVIIVDST--DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV--FPIVRP 217 (283)
T ss_pred CCcccEEEECCC--CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH--CCCEEE
Confidence 467999998864 56 3557788999999999998743 3 34567777777753 444443
No 49
>PRK01581 speE spermidine synthase; Validated
Probab=95.41 E-value=0.25 Score=51.26 Aligned_cols=50 Identities=14% Similarity=0.031 Sum_probs=35.7
Q ss_pred cccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 189 GFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 189 ~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
-++..++|.+....+...| .+||+++.|.|.++..++. ..+.++|+.++.
T Consensus 133 E~iYHE~Lvhp~m~~h~~P-krVLIIGgGdG~tlrelLk-~~~v~~It~VEI 182 (374)
T PRK01581 133 EQIYHEALVHPIMSKVIDP-KRVLILGGGDGLALREVLK-YETVLHVDLVDL 182 (374)
T ss_pred HHHHHHHHHHHHHHhCCCC-CEEEEECCCHHHHHHHHHh-cCCCCeEEEEeC
Confidence 3556777888555444444 5999999999988777775 445568888876
No 50
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.96 E-value=0.066 Score=52.10 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=30.1
Q ss_pred HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 198 ~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.++...+.++|.+||-+.++.|.++-.+++++|+.|+|+.+..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~ 80 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDI 80 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecC
Confidence 3444568899999999999999999999999999999998865
No 51
>PLN03075 nicotianamine synthase; Provisional
Probab=94.89 E-value=0.18 Score=50.91 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=46.9
Q ss_pred cCcceEEEeCC----CCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeeeeeeeecCCCCC
Q 012978 351 NGFSSMIVVAP----ELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTH 426 (452)
Q Consensus 351 ~~~D~liia~~----~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~lR~yQVLP~RTH 426 (452)
++||-+++++- ..+|..++.++...|+|+|.+++=+.+- ++ .|...-+.+.-+|-|+++- |+|
T Consensus 194 ~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G---------~r---~~LYp~v~~~~~~gf~~~~-~~~ 260 (296)
T PLN03075 194 KEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHG---------AR---AFLYPVVDPCDLRGFEVLS-VFH 260 (296)
T ss_pred CCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccc---------hH---hhcCCCCChhhCCCeEEEE-EEC
Confidence 68999999871 1489999999999999999998876321 22 3544444444556777663 478
Q ss_pred CCCc
Q 012978 427 PCMQ 430 (452)
Q Consensus 427 P~m~ 430 (452)
|.--
T Consensus 261 P~~~ 264 (296)
T PLN03075 261 PTDE 264 (296)
T ss_pred CCCC
Confidence 8543
No 52
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.81 E-value=0.26 Score=48.19 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=80.9
Q ss_pred HHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCHHHHHhhhccccccccccCcCcc
Q 012978 200 LSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVTSQSETSE 279 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~~~~~~~~~~~l~~l~~~~~~~~ 279 (452)
..+.++++|.+||-+..+.|-++..++++.| .|.|+.+.. ++.+++.... -..+.
T Consensus 44 i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~---------------s~~ML~~a~~-k~~~~-------- 98 (238)
T COG2226 44 ISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDI---------------SESMLEVARE-KLKKK-------- 98 (238)
T ss_pred HHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEEC---------------CHHHHHHHHH-Hhhcc--------
Confidence 4455677999999999999999999999998 999998865 3344443221 00000
Q ss_pred cchhhhhhhhhhcccccccCCCCcccccccccccccchhhhhcCCCccccccccccccccchHHHHHH-hhhcCcceEEE
Q 012978 280 QSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKL-WKENGFSSMIV 358 (452)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~-~~~~~~D~lii 358 (452)
+.. .......++.++ +..+.||.+.+
T Consensus 99 ----------------------------------~~~-------------------~i~fv~~dAe~LPf~D~sFD~vt~ 125 (238)
T COG2226 99 ----------------------------------GVQ-------------------NVEFVVGDAENLPFPDNSFDAVTI 125 (238)
T ss_pred ----------------------------------Ccc-------------------ceEEEEechhhCCCCCCccCEEEe
Confidence 000 000111122211 33578998888
Q ss_pred eCCC---CChHHHHHhHHhcccCCCcEEE---EeCChHHHHHHHHHHH
Q 012978 359 VAPE---LDPWSFVKDLLPLLSYSAPFAI---YHQYLQPLATCMHSLQ 400 (452)
Q Consensus 359 a~~~---~dP~~il~~ll~~L~pS~p~VV---Ysp~~epL~e~~~~L~ 400 (452)
+-.- .|+..+|..+..-|+|+|.++| ..|...++..+|..+.
T Consensus 126 ~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~ 173 (238)
T COG2226 126 SFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYY 173 (238)
T ss_pred eehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHH
Confidence 7521 4889999999999999997765 3456667788888664
No 53
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=94.77 E-value=0.21 Score=48.64 Aligned_cols=44 Identities=16% Similarity=0.034 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
...++....+.+|.+||.++.+.|.++..++++. +.+.|+.+..
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~ 63 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDS 63 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEEC
Confidence 5678888888999999999999999999999886 4468888875
No 54
>PRK04457 spermidine synthase; Provisional
Probab=94.63 E-value=0.65 Score=45.91 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=28.6
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 206 AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 206 ~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.++.++|+++.++|.++.+++.+. +.++|+.++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEi 98 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEI 98 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEEC
Confidence 456899999999999999999887 4567888876
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=94.62 E-value=0.26 Score=51.50 Aligned_cols=43 Identities=26% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+..|+...++.+|.+||.++.+.|.++..++.+.|. +|+.+..
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~--~V~giDl 198 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV--SVVGVTI 198 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC--EEEEEeC
Confidence 567888899999999999999999999999988753 6776654
No 56
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=94.22 E-value=0.23 Score=52.47 Aligned_cols=45 Identities=16% Similarity=-0.034 Sum_probs=37.8
Q ss_pred HHHHHH-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 196 LSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 196 La~iL~-~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
-|+++. +.++.+|.+||.+..+.|..|..++++++ .|+|+.++..
T Consensus 226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~ 271 (426)
T TIGR00563 226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIH 271 (426)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCC
Confidence 344444 57899999999999999999999999997 7899998763
No 57
>PRK08317 hypothetical protein; Provisional
Probab=93.99 E-value=0.78 Score=43.20 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=39.2
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 197 a~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.+++.+.++.++.+||.++.+.|.++..++.++|+.++++.+..
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~ 52 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDR 52 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeC
Confidence 56778889999999999999999999999999987888888865
No 58
>PLN02366 spermidine synthase
Probab=93.81 E-value=1.2 Score=45.32 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=35.9
Q ss_pred hcCcceEEEeCCCCChH---------HHHHhHHhcccCCCcEEEEe--CC--hHHHHHHHHHHHh
Q 012978 350 ENGFSSMIVVAPELDPW---------SFVKDLLPLLSYSAPFAIYH--QY--LQPLATCMHSLQV 401 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~---------~il~~ll~~L~pS~p~VVYs--p~--~epL~e~~~~L~~ 401 (452)
.+.||.+|+++. +|+ +.+..+...|+|+|.||+-+ |+ .+.+..++..|+.
T Consensus 163 ~~~yDvIi~D~~--dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~ 225 (308)
T PLN02366 163 EGTYDAIIVDSS--DPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRE 225 (308)
T ss_pred CCCCCEEEEcCC--CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHH
Confidence 357999999874 553 56889999999999998732 23 3445666666664
No 59
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=93.77 E-value=0.66 Score=45.21 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=30.5
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHh-CCCceEEEeec
Q 012978 205 VAANSDVLVVDMAGGLLTGAVAERL-GGTGYVCNTCI 240 (452)
Q Consensus 205 I~~g~rvLv~d~~~GlltaAv~erm-gg~G~v~~~~~ 240 (452)
+.+|++||.++.+.|.++.++++++ .+.++++.+..
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~ 90 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDN 90 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeC
Confidence 5689999999999999999999886 45678888865
No 60
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.65 E-value=0.65 Score=46.45 Aligned_cols=52 Identities=4% Similarity=-0.097 Sum_probs=37.5
Q ss_pred hcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHh
Q 012978 350 ENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQV 401 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~ 401 (452)
.+.||.++..........++..+...|+|+|.|++-....++..++...++.
T Consensus 223 ~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~ 274 (288)
T TIGR00406 223 EGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQ 274 (288)
T ss_pred CCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHc
Confidence 3578955543311122367788899999999998877888888888888864
No 61
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=93.36 E-value=0.71 Score=47.01 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=31.3
Q ss_pred HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 198 ~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.++.+.+..+|.+||.++.+.|.++..++.+ |. +.|+.+..
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDp 152 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDP 152 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcC
Confidence 3555667778999999999999998888764 33 46777765
No 62
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.35 E-value=0.081 Score=44.20 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 207 ANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 207 ~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
||++||.++.+.|.++.+++.+- +..+|+.++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~ 33 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDI 33 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEES
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeC
Confidence 78999999999999999999943 3457888876
No 63
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.30 E-value=0.45 Score=46.95 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=44.3
Q ss_pred HHHHHHhcCcccccccch---hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 176 ICEAYFKKNPARIGFLRV---DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 176 l~e~y~~Kdp~Ki~~lR~---DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.|..|..+ ++++ ++.-.++...++.+|.+||.++.+.|.++..++.+.| +.|+.+..
T Consensus 23 ~~e~~~g~~-----~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~ 83 (263)
T PTZ00098 23 AYEFIFGED-----YISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDI 83 (263)
T ss_pred hHHHHhCCC-----CCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEEC
Confidence 455666655 3444 6678889999999999999999999999888887653 36776654
No 64
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=93.14 E-value=2 Score=42.45 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=40.5
Q ss_pred hcCcceEEEeCCCCCh---------HHHHHhHHhcccCCCcEEEEeC--C--hHHHHHHHHHHHhccCccceeeeeeee
Q 012978 350 ENGFSSMIVVAPELDP---------WSFVKDLLPLLSYSAPFAIYHQ--Y--LQPLATCMHSLQVRKMAIGLQISEPWL 415 (452)
Q Consensus 350 ~~~~D~liia~~~~dP---------~~il~~ll~~L~pS~p~VVYsp--~--~epL~e~~~~L~~~~~~v~l~l~E~~l 415 (452)
.+.||.+|++.+ +| .+.++.+...|+|+|.+++.+. + .+.+..++..|+.. |-.+....+..
T Consensus 143 ~~~yDvIi~D~~--~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~--F~~v~~~~~~v 217 (270)
T TIGR00417 143 ENTFDVIIVDST--DPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA--FPITEYYTANI 217 (270)
T ss_pred CCCccEEEEeCC--CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH--CCCeEEEEEEc
Confidence 357998888764 33 2456789999999999998644 3 33345555666643 65555554443
No 65
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=92.98 E-value=0.74 Score=46.95 Aligned_cols=41 Identities=17% Similarity=0.051 Sum_probs=30.3
Q ss_pred HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 198 ~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.++.+.+.-.|.+||.++.+.|..+..++++ | .+.|+.+..
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~ 153 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDP 153 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcC
Confidence 3444445456899999999999999988886 3 346777764
No 66
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=92.95 E-value=0.89 Score=47.66 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=33.7
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 197 a~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.++..-.-..|..+|.++.|+|-.+.++|.+. +++.++.++.
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI 154 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEI 154 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEEC
Confidence 344444444567899999999999999999986 6678988876
No 67
>PRK03612 spermidine synthase; Provisional
Probab=92.92 E-value=1.6 Score=47.62 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=37.7
Q ss_pred cCcceEEEeCCCCChH----------HHHHhHHhcccCCCcEEEEe--CC--hHHHHHHHHHHHhc
Q 012978 351 NGFSSMIVVAPELDPW----------SFVKDLLPLLSYSAPFAIYH--QY--LQPLATCMHSLQVR 402 (452)
Q Consensus 351 ~~~D~liia~~~~dP~----------~il~~ll~~L~pS~p~VVYs--p~--~epL~e~~~~L~~~ 402 (452)
+.||.+|++.+ +|+ +.++.+...|+|+|.|++-+ |+ .+.+.++...|++.
T Consensus 372 ~~fDvIi~D~~--~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~ 435 (521)
T PRK03612 372 EKFDVIIVDLP--DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAA 435 (521)
T ss_pred CCCCEEEEeCC--CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHc
Confidence 57999999875 554 46789999999999999843 22 45567788888764
No 68
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.67 E-value=1.6 Score=40.81 Aligned_cols=44 Identities=20% Similarity=0.120 Sum_probs=34.9
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 197 a~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..++......++.+||.++.+.|.++..++.+.+..+.++.+..
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~ 72 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDF 72 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEEC
Confidence 44555556668999999999999999999998765477777765
No 69
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=92.52 E-value=1.4 Score=43.12 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=39.4
Q ss_pred CcceEEEeCCCCCh-HHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCcccee
Q 012978 352 GFSSMIVVAPELDP-WSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQ 409 (452)
Q Consensus 352 ~~D~liia~~~~dP-~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~ 409 (452)
.||.++... ..++ ..+++.+...|+|+|.|++.....+...++...|+.. +|..++
T Consensus 179 ~fD~Vvani-~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~-Gf~~~~ 235 (250)
T PRK00517 179 KADVIVANI-LANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEA-GFTLDE 235 (250)
T ss_pred CcCEEEEcC-cHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHC-CCEEEE
Confidence 588554322 2232 3567889999999999999888888888888888764 354443
No 70
>PLN02244 tocopherol O-methyltransferase
Probab=92.03 E-value=0.96 Score=46.38 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=37.0
Q ss_pred hHHHHHHHhcCC-----CCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 194 DMLSLLLSMGNV-----AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 194 DtLa~iL~~anI-----~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.+-.++.++++ .+|.+||.++.+.|.++..++++.| +.|+.++.
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~ 149 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITL 149 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEEC
Confidence 346678888999 8899999999999999999998874 36776654
No 71
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=91.90 E-value=1.8 Score=41.74 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=30.7
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHhC-CCceEEEeec
Q 012978 205 VAANSDVLVVDMAGGLLTGAVAERLG-GTGYVCNTCI 240 (452)
Q Consensus 205 I~~g~rvLv~d~~~GlltaAv~ermg-g~G~v~~~~~ 240 (452)
+.++.++|.++.+.|.++..+++++. +.++++.+..
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~ 87 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDN 87 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeC
Confidence 46899999999999999999999874 5678888875
No 72
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=91.60 E-value=3 Score=43.88 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=24.4
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 206 AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 206 ~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..|.+||.+.++.|.++.+.+ ++|-..|+.++.
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa--~~ga~~V~~VD~ 251 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSAL--MGGCSQVVSVDT 251 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHH--hCCCCEEEEEEC
Confidence 468999999998887654433 456668998876
No 73
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.89 E-value=1.8 Score=41.87 Aligned_cols=168 Identities=15% Similarity=0.172 Sum_probs=97.5
Q ss_pred HHHHHHcCCChHHHHHHHHhccccccccccccHHHHHHH----hhhccCCcEEEeCCChHHHHHHHHhcCcccccccchh
Q 012978 119 IDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLK----KQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVD 194 (452)
Q Consensus 119 I~~lK~~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkk----K~kKy~~~~~i~~pt~~~l~e~y~~Kdp~Ki~~lR~D 194 (452)
-+.|-+.|+..+-++.+|-+|-++= +++-++|+.- -+-++++ ...+-....=-.|||+.
T Consensus 31 y~~lv~~gv~Selll~~l~rn~s~n----~~~~a~~~qd~ls~~~D~ll~----------~~~k~VMm~WEtpiMha--- 93 (271)
T KOG1709|consen 31 YRRLVEAGVPSELLLFALGRNESPN----ADGNAPYLQDYLSTAEDTLLD----------SLGKGVMMRWETPIMHA--- 93 (271)
T ss_pred HHHHHHcCCchhhhhhccccccCcc----ccccchHHHHHHhhhhhHHHh----------hccchhhhhhhhHHHHH---
Confidence 4567888999999999998886543 6666666532 1111110 00000011111244443
Q ss_pred HHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCHHHHHhhhcccccccccc
Q 012978 195 MLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRASVSDVTSQ 274 (452)
Q Consensus 195 tLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~~~~~~~~~~~l~~l~~~ 274 (452)
+|-.++ .-|+|||.++=++|++..++-++==-.-.|+..|+ ++.+++.. ..+-
T Consensus 94 -~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-----------------~V~krmr~--~gw~--- 146 (271)
T KOG1709|consen 94 -LAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-----------------DVLKRMRD--WGWR--- 146 (271)
T ss_pred -HHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH-----------------HHHHHHHh--cccc---
Confidence 344443 34999999999999999998776544445555544 33333311 0000
Q ss_pred CcCcccchhhhhhhhhhcccccccCCCCcccccccccccccchhhhhcCCCccccccccccccccchHHHHHHhhhcCcc
Q 012978 275 SETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHSPVNKISKSHKVGEKASQETLKLWKENGFS 354 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~D 354 (452)
+.. ++. -.+-..++++..+..+.||
T Consensus 147 -ek~-----------------------------------nVi-------------------il~g~WeDvl~~L~d~~FD 171 (271)
T KOG1709|consen 147 -EKE-----------------------------------NVI-------------------ILEGRWEDVLNTLPDKHFD 171 (271)
T ss_pred -ccc-----------------------------------ceE-------------------EEecchHhhhccccccCcc
Confidence 000 000 0001245667777788999
Q ss_pred eEEEeCCCC-----ChHHHHHhHHhcccCCCcEEEEeC
Q 012978 355 SMIVVAPEL-----DPWSFVKDLLPLLSYSAPFAIYHQ 387 (452)
Q Consensus 355 ~liia~~~~-----dP~~il~~ll~~L~pS~p~VVYsp 387 (452)
|+.-++ | |-|+.-+++..+|+|+|.|-.|.-
T Consensus 172 GI~yDT--y~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 172 GIYYDT--YSELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred eeEeec--hhhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 999997 4 457888999999999987755543
No 74
>PLN02823 spermine synthase
Probab=90.72 E-value=6.6 Score=40.40 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=36.6
Q ss_pred hcCcceEEEeCCCCChH-----------HHHH-hHHhcccCCCcEEEEeCC------hHHHHHHHHHHHh
Q 012978 350 ENGFSSMIVVAPELDPW-----------SFVK-DLLPLLSYSAPFAIYHQY------LQPLATCMHSLQV 401 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~-----------~il~-~ll~~L~pS~p~VVYsp~------~epL~e~~~~L~~ 401 (452)
.+.||-+|++++ ||+ +.++ .+...|+|+|-||+-+.. .+.+...+..|++
T Consensus 174 ~~~yDvIi~D~~--dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~ 241 (336)
T PLN02823 174 DEKFDVIIGDLA--DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ 241 (336)
T ss_pred CCCccEEEecCC--CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence 357999999874 653 3566 789999999999876532 4456777777875
No 75
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=90.55 E-value=3.6 Score=38.35 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=44.6
Q ss_pred HhcCcccccccchhH--HHH-HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 181 FKKNPARIGFLRVDM--LSL-LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 181 ~~Kdp~Ki~~lR~Dt--La~-iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
|--+|.+|+.+=+.+ ||. |++--|...|--||+++-+.|++|=|++.|+-..-.++.++.
T Consensus 19 wi~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~ 81 (194)
T COG3963 19 WIDNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEY 81 (194)
T ss_pred HhcCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEe
Confidence 344677777765533 333 444445567888999999999999999999988878888876
No 76
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=90.38 E-value=0.57 Score=45.32 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 204 nI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
.|++|++||-.+.++|--+.-++.-+|.+|.||.++-+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs 107 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFS 107 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESS
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEec
Confidence 56899999999999999999999999999999999764
No 77
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=90.11 E-value=1.5 Score=36.79 Aligned_cols=31 Identities=23% Similarity=0.114 Sum_probs=26.3
Q ss_pred CCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 208 NSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 208 g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
|.+||....++|.++.+++++. ...++.++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi 31 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDI 31 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEES
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEE
Confidence 6799999999999999999874 567887776
No 78
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.07 E-value=2.3 Score=41.49 Aligned_cols=41 Identities=24% Similarity=0.070 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+..+|.... ..+.+||.++.+.|.++..++++ | ..|+.++.
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g--~~v~~vD~ 74 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-G--HQVILCDL 74 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-C--CEEEEEEC
Confidence 566777766 56789999999999999999886 3 46776654
No 79
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=89.93 E-value=2.1 Score=44.39 Aligned_cols=48 Identities=23% Similarity=0.142 Sum_probs=38.5
Q ss_pred hhHHHHHHH-hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-EEeec
Q 012978 193 VDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYV-CNTCI 240 (452)
Q Consensus 193 ~DtLa~iL~-~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v-~~~~~ 240 (452)
.|.-||+-. ..+..||.+||-+-..-|-=|+.+++.|.+.|.+ +.+..
T Consensus 141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~ 190 (355)
T COG0144 141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDV 190 (355)
T ss_pred cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcC
Confidence 344566665 6788999999988888899999999999998877 66654
No 80
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.92 E-value=3.6 Score=40.03 Aligned_cols=71 Identities=20% Similarity=0.141 Sum_probs=55.1
Q ss_pred ChHHHHHHHHhc-CcccccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCC
Q 012978 172 FARSICEAYFKK-NPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (452)
Q Consensus 172 t~~~l~e~y~~K-dp~Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~ 242 (452)
.+..+-+.-+.. .|.-.+.+-+|-...+-++..+....|+|++++--|.=+-|+|.++-..|+|+.++...
T Consensus 37 ~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~ 108 (237)
T KOG1663|consen 37 LLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDA 108 (237)
T ss_pred HHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecCh
Confidence 444555554444 46667777778777777777888899999999988888888999999999999998743
No 81
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=89.76 E-value=8.5 Score=39.35 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=53.2
Q ss_pred hcCcceEEEeCC---CCChHHHHHhHHhcccCCCcEEEEeCChHH-----------------------------HHHHHH
Q 012978 350 ENGFSSMIVVAP---ELDPWSFVKDLLPLLSYSAPFAIYHQYLQP-----------------------------LATCMH 397 (452)
Q Consensus 350 ~~~~D~liia~~---~~dP~~il~~ll~~L~pS~p~VVYsp~~ep-----------------------------L~e~~~ 397 (452)
.+.||.++...- -.||..++..+...|+|+|.|++-.+.... ..|+..
T Consensus 196 ~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~ 275 (322)
T PLN02396 196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSM 275 (322)
T ss_pred cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHH
Confidence 357996664320 138999999999999999998876543321 122233
Q ss_pred HHHhccCccceeeeeeeeeeeeecCCCCCCCCcccCceEEEEEEEEec
Q 012978 398 SLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSGCGGYILSGTRTA 445 (452)
Q Consensus 398 ~L~~~~~~v~l~l~E~~lR~yQVLP~RTHP~m~m~~~~GyiLsg~kv~ 445 (452)
.|+. ..+++.|..=-.|..+-+|-+. ..+..--|+++|.|-.
T Consensus 276 lL~~----aGf~i~~~~G~~~~p~~~~w~~--~~~~~~ny~~~~~k~~ 317 (322)
T PLN02396 276 ILQR----ASVDVKEMAGFVYNPITGRWLL--SDDISVNYIAYGTKRK 317 (322)
T ss_pred HHHH----cCCeEEEEeeeEEcCcCCeEEe--cCCCceeehhheecCc
Confidence 3332 2355556555556555554442 2333667888887643
No 82
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=89.39 E-value=7.1 Score=39.19 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=42.7
Q ss_pred chHHHHHHhh--hcCcceEEEeCCCCCh---------HHHHHhHHhcccCCCcEEEE--eCChHH--HHHHHHHHH
Q 012978 340 ASQETLKLWK--ENGFSSMIVVAPELDP---------WSFVKDLLPLLSYSAPFAIY--HQYLQP--LATCMHSLQ 400 (452)
Q Consensus 340 ~~~~~~~~~~--~~~~D~liia~~~~dP---------~~il~~ll~~L~pS~p~VVY--sp~~ep--L~e~~~~L~ 400 (452)
...+..+-+. +..||.+|+++. || ++..+.+...|++.|-||+- ||+.++ +...+..++
T Consensus 135 ~i~Dg~~~v~~~~~~fDvIi~D~t--dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~ 208 (282)
T COG0421 135 IIDDGVEFLRDCEEKFDVIIVDST--DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVS 208 (282)
T ss_pred EeccHHHHHHhCCCcCCEEEEcCC--CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHH
Confidence 3444444443 237999999984 88 89999999999999999987 566655 455555554
No 83
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=89.22 E-value=17 Score=37.55 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=31.3
Q ss_pred HHHhcCC-CCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 199 LLSMGNV-AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 199 iL~~anI-~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
++..+.+ .++.+||.++.+.|.++..++.++++ +.++.+..
T Consensus 104 ~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~ 145 (340)
T PLN02490 104 ALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQ 145 (340)
T ss_pred HHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEEC
Confidence 4444555 57899999999999999999998854 56666654
No 84
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=89.14 E-value=6.4 Score=38.59 Aligned_cols=44 Identities=2% Similarity=-0.041 Sum_probs=31.5
Q ss_pred HHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceee
Q 012978 366 WSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQI 410 (452)
Q Consensus 366 ~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l 410 (452)
..++..+..+|+|+|.|++-... ++..++...|+..+-...+-.
T Consensus 196 ~~i~~~a~~~L~~gG~l~l~~~~-~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 196 RRVAAGAPDWLAPGGHLLVETSE-RQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHHHHHhcCCCCEEEEEECc-chHHHHHHHHHHCCCCceeeE
Confidence 46777888999999988865544 567888888887654444433
No 85
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=88.73 E-value=1.2 Score=38.05 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=49.3
Q ss_pred CccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhccccccccccccHHHHHHHhhhccCCcEEEeCC------ChH
Q 012978 101 DNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP------FAR 174 (452)
Q Consensus 101 dNr~i~Dd~~~QkLs~eeI~~lK~~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~~~i~~p------t~~ 174 (452)
.||.++|..+|+=.|-+||.+|.++|. .|+|+-. |..
T Consensus 7 ~NRRLYDT~tS~YITLedi~~lV~~g~-------------------------------------~f~V~DakTgeDiT~~ 49 (107)
T TIGR01848 7 PNRRLYDTETSSYVTLEDIRDLVREGR-------------------------------------EFQVVDSKSGDDLTRS 49 (107)
T ss_pred CCCcccCCCccceeeHHHHHHHHHCCC-------------------------------------eEEEEECCCCchhHHH
Confidence 599999999999999999999999993 4444422 333
Q ss_pred HHHHHHHhcCcccccccchhHHHHHHHhcC
Q 012978 175 SICEAYFKKNPARIGFLRVDMLSLLLSMGN 204 (452)
Q Consensus 175 ~l~e~y~~Kdp~Ki~~lR~DtLa~iL~~an 204 (452)
.|+++.+........-+-.+.|.+|+.+.|
T Consensus 50 iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 50 ILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 445566666555566777888888877655
No 86
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=88.15 E-value=5.4 Score=37.64 Aligned_cols=47 Identities=23% Similarity=0.152 Sum_probs=38.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.....++...++.++.++|.++.+.|.++..++.+.+..++++.+..
T Consensus 38 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~ 84 (239)
T PRK00216 38 VWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDF 84 (239)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeC
Confidence 44566777778888999999999999999999998754677777765
No 87
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=88.13 E-value=4.2 Score=41.39 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=34.5
Q ss_pred ccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 190 FLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 190 ~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.|++.....|+.++++.+|.++|....+.|.++..++. +| ..|+.++.
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~--~~v~g~Di 212 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MG--AKVIGCDI 212 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hC--CeEEEEcC
Confidence 45555567788889999999999998888877655443 44 35666644
No 88
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=88.05 E-value=3.6 Score=43.01 Aligned_cols=41 Identities=5% Similarity=0.058 Sum_probs=30.4
Q ss_pred HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+|.+.....+++||.++.+.|.++.+++.+ ++..+|+-++.
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~ 260 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDE 260 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEEC
Confidence 333333344679999999999999998887 45568887766
No 89
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=87.63 E-value=4 Score=42.08 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 198 ~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.++........++||.++.+.|.++.+++.+ ++..+|+.++.
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~-~p~~~v~~vDi 228 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARH-SPKIRLTLSDV 228 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHh-CCCCEEEEEEC
Confidence 3344344445679999999999999999886 44457777765
No 90
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=87.47 E-value=1.7 Score=38.74 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=30.6
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 206 AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 206 ~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+.+||-++.+.|.++-.++.++++.+.++.+..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~ 36 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDI 36 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEEC
Confidence 46889999999999999999999988889998876
No 91
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=87.23 E-value=1.8 Score=42.45 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=34.3
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 205 I~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
|+||+|||-++..+|--+.-+..-+|.+|.||.++-.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs 190 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFS 190 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEec
Confidence 3799999999999999999999999999999999753
No 92
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=86.88 E-value=1.8 Score=39.43 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 197 a~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
-.|+..+++.+|.++|.++.|.|.++..++.+ + ++++.++..
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~--~~v~~vE~~ 44 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-A--ARVTAIEID 44 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-C--CeEEEEECC
Confidence 46788889999999999999999999999998 3 578888763
No 93
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=86.88 E-value=8.8 Score=40.82 Aligned_cols=42 Identities=17% Similarity=-0.002 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+..++.+.++.+|.+||.+..+.|.++.+++.+. ++|+.++.
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~ 327 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEG 327 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeC
Confidence 3456677788899999999999999999999873 57888776
No 94
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=86.85 E-value=1.2 Score=40.69 Aligned_cols=49 Identities=29% Similarity=0.287 Sum_probs=33.7
Q ss_pred cchhHHH-HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 191 LRVDMLS-LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 191 lR~DtLa-~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
-|.|.-+ .|+.+..-..++++|.+++++|+++.+++.+ ++..+|+.++.
T Consensus 14 ~~~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi 63 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDI 63 (170)
T ss_dssp TSHHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEES
T ss_pred CCCCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcC
Confidence 3444333 3333333347899999999999999999875 45556877766
No 95
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=86.83 E-value=9 Score=36.63 Aligned_cols=42 Identities=7% Similarity=-0.050 Sum_probs=29.9
Q ss_pred HHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceee
Q 012978 367 SFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQI 410 (452)
Q Consensus 367 ~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l 410 (452)
.++..+..+|+|+|.+++-..+. +..++...|++. +|..+.+
T Consensus 198 ~~i~~~~~~L~~gG~~~~~~~~~-~~~~~~~~l~~~-gf~~v~~ 239 (251)
T TIGR03534 198 RIIAQAPRLLKPGGWLLLEIGYD-QGEAVRALFEAA-GFADVET 239 (251)
T ss_pred HHHHHHHHhcccCCEEEEEECcc-HHHHHHHHHHhC-CCCceEE
Confidence 56788999999999988877653 446666667653 4655544
No 96
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=86.26 E-value=11 Score=37.85 Aligned_cols=41 Identities=29% Similarity=0.208 Sum_probs=30.1
Q ss_pred HHHhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEeec
Q 012978 199 LLSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.+..+++.+|.+|||.+.+ -|++++.+|.++|.. .|+....
T Consensus 155 ~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~-~vi~~~~ 196 (339)
T cd08239 155 ALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAE-DVIGVDP 196 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECC
Confidence 3466789999999999762 377788888888754 4665543
No 97
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=86.15 E-value=3.3 Score=44.24 Aligned_cols=43 Identities=16% Similarity=0.005 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.-.++...++.+|.+||.++++.|.++..++.+.|. +|+.+..
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvDi 297 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDV--HVVGIDL 297 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCC--EEEEEEC
Confidence 455667778889999999999999999999988743 6777765
No 98
>PRK10481 hypothetical protein; Provisional
Probab=85.58 E-value=2.3 Score=41.28 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=54.8
Q ss_pred cccchHHHHHHhhhcCcceEEEeCCCCC-------------hHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhc
Q 012978 337 GEKASQETLKLWKENGFSSMIVVAPELD-------------PWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVR 402 (452)
Q Consensus 337 ~~~~~~~~~~~~~~~~~D~liia~~~~d-------------P~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~ 402 (452)
....+++.++.+.+.|+|.++++| .-| |-.++..+...+..++.|.|..||.++..+...+....
T Consensus 75 v~~~lq~~i~~l~~~g~d~ivl~C-tgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~~~qi~~~~~kw~~~ 152 (224)
T PRK10481 75 VERDLQSVIEVLDNQGYDVILLLC-TGEFPSLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPVEEQLAQQAQKWQVL 152 (224)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEe-cCCCCCccccCccccCchhhHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHHHhc
Confidence 445667778888889999999998 333 77788999999999999999999999998888887765
No 99
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=85.53 E-value=16 Score=36.47 Aligned_cols=52 Identities=15% Similarity=0.021 Sum_probs=35.0
Q ss_pred ccccchhHHHHHHHh----cCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 188 IGFLRVDMLSLLLSM----GNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 188 i~~lR~DtLa~iL~~----anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+...|+++-..+... ..-.++.+||.+++++|.++.+++.+. ..++|+.++.
T Consensus 98 vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDi 153 (284)
T TIGR03533 98 VLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDI 153 (284)
T ss_pred CccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEEC
Confidence 334666654444322 112346799999999999999999875 3457887765
No 100
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=85.29 E-value=12 Score=38.01 Aligned_cols=32 Identities=19% Similarity=0.070 Sum_probs=25.9
Q ss_pred CCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 208 NSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 208 g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.++|.+++++|.++.+++.+. +..+|+.++.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDi 165 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDI 165 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeC
Confidence 3689999999999999998875 3457777765
No 101
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=85.29 E-value=10 Score=35.43 Aligned_cols=41 Identities=15% Similarity=-0.087 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 197 a~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..|+.+..+.+++++|.++.+.|.++..++++ | +.|+.+..
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g--~~V~~iD~ 60 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-G--YDVRAWDH 60 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-C--CeEEEEEC
Confidence 44555566667889999999999999999986 3 47777755
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=85.22 E-value=13 Score=36.26 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=29.8
Q ss_pred cCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 203 GNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 203 anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
....++.++|.+++++|.++.+++..+ +.+.++.++.
T Consensus 104 ~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDi 140 (275)
T PRK09328 104 LLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDI 140 (275)
T ss_pred ccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEEC
Confidence 345678899999999999999999876 4567777765
No 103
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=84.54 E-value=3.1 Score=41.25 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=38.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
..+..|+.++++.+|.+||.++.|.|.+|.+++++ ++ .|+.++..
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~--~v~avE~d 73 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AA--KVTAVEID 73 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CC--cEEEEECC
Confidence 45678888899999999999999999999999998 33 78888764
No 104
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=84.21 E-value=3.1 Score=39.62 Aligned_cols=34 Identities=24% Similarity=0.148 Sum_probs=25.1
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 204 nI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.-+.-+++|+++.+.|.+|..++.|- ..+..+..
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDi 73 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDI 73 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES
T ss_pred CccccceeEecCCCccHHHHHHHHhh---CceEEEeC
Confidence 34456889999999999999999985 46776654
No 105
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=84.02 E-value=7.9 Score=43.79 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=27.4
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 204 nI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
....|.+||.+.++.|.++.+++.+ |-..|+.++.
T Consensus 535 ~~~~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~ 569 (702)
T PRK11783 535 QMAKGKDFLNLFAYTGTASVHAALG--GAKSTTTVDM 569 (702)
T ss_pred HhcCCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeC
Confidence 3445899999999999998888864 4446888876
No 106
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=83.86 E-value=14 Score=35.77 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 197 a~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..++.+....++++||.++.+.|.++..++.+ | ..++.+..
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~~D~ 72 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-G--SQVTALDL 72 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-C--CeEEEEEC
Confidence 33445555567899999999999998888764 3 46776654
No 107
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.85 E-value=1.5 Score=44.74 Aligned_cols=55 Identities=29% Similarity=0.390 Sum_probs=42.1
Q ss_pred HHHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCC
Q 012978 199 LLSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFS 256 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~ 256 (452)
-...|||++|++|||++.|- ||+|+.+|..||-. +|+-... .+..++..+.|+|.
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~-~VVi~d~--~~~Rle~Ak~~Ga~ 216 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGAS-DVVITDL--VANRLELAKKFGAT 216 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCC-cEEEeec--CHHHHHHHHHhCCe
Confidence 35679999999999999965 99999999999876 5555543 33466666666654
No 108
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=83.53 E-value=13 Score=34.86 Aligned_cols=34 Identities=24% Similarity=0.139 Sum_probs=26.1
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 206 AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 206 ~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+.+||.++.+.|.++..++++ +..+.++.+..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~~~~~~D~ 66 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKR-FPQAEFIALDI 66 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHh-CCCCcEEEEeC
Confidence 34578999999999999988887 45566666654
No 109
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=82.58 E-value=19 Score=35.86 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=28.1
Q ss_pred HhcCCCCCCeEEEEeCC--CcHHHHHHHHHhCCCceEEEee
Q 012978 201 SMGNVAANSDVLVVDMA--GGLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~--~GlltaAv~ermgg~G~v~~~~ 239 (452)
..+++++|.+||+.+.+ -|.+++.+|..+|. +|+...
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~--~Vi~~~ 170 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC--KVVGAA 170 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC--EEEEEe
Confidence 56899999999999853 47777778888865 466554
No 110
>PRK06922 hypothetical protein; Provisional
Probab=82.42 E-value=5.2 Score=44.72 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=30.9
Q ss_pred hcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 202 MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 202 ~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
++...+|++||.++.+.|.++.+++.+. +.+.++.+..
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDI 450 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDI 450 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEEC
Confidence 4455579999999999999998888875 5678888765
No 111
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=82.31 E-value=15 Score=36.44 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=26.1
Q ss_pred CCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 208 NSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 208 g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.+||.+++|+|.++.+++... +..+|+.++.
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDi 146 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDI 146 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEEC
Confidence 4799999999999999999875 3357777765
No 112
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=82.12 E-value=0.99 Score=42.90 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=44.0
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCCC
Q 012978 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDS 243 (452)
Q Consensus 197 a~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~~ 243 (452)
+++|.+++++||+.|+.+=-++|-.|.-++-.+|..|+||.+-+.+.
T Consensus 38 ~E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 38 GEVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred cceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 89999999999999999999999999999999999999999977653
No 113
>PHA03411 putative methyltransferase; Provisional
Probab=81.19 E-value=20 Score=35.97 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 204 nI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+++++||.++.++|.++.+++.+.++ ..|+.++.
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDi 96 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVEL 96 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEEC
Confidence 4456789999999999999999998654 47887765
No 114
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=80.82 E-value=7.5 Score=36.45 Aligned_cols=40 Identities=18% Similarity=-0.003 Sum_probs=31.6
Q ss_pred HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 198 ~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.++.+.+..++++||.++.+.|..+..++++ | ..|+.+..
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g--~~V~gvD~ 60 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-G--FDVTAWDK 60 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-C--CEEEEEeC
Confidence 4556667778999999999999999999986 3 26776654
No 115
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=80.64 E-value=28 Score=37.01 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=37.3
Q ss_pred ccccchhHHHHHHHh-cCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 188 IGFLRVDMLSLLLSM-GNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 188 i~~lR~DtLa~iL~~-anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+..-|+||-..+-.. +.+.++.++|.+++++|.++.+++.+. +...|+.++.
T Consensus 231 vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDi 283 (423)
T PRK14966 231 VLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDI 283 (423)
T ss_pred ccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEEC
Confidence 344677776555543 235678899999999999999988764 3457777765
No 116
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.08 E-value=22 Score=36.48 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=29.9
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChH
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQ 390 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~e 390 (452)
.++|.+|-++. .| ..+...+.+++++|.+++..-+..
T Consensus 237 ~g~D~vie~~G--~~-~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 237 RGADVVIEAVG--SP-PALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCCCEEEECCC--CH-HHHHHHHHHhcCCCEEEEEeccCC
Confidence 37999999886 34 488999999999999998776643
No 117
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.06 E-value=11 Score=38.76 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEeecCC
Q 012978 200 LSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGD 242 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~~~~~ 242 (452)
|-.+|++||.+|+|++-+ .|.++.-+|..|| -+|+.+..++
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~ 200 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSE 200 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCCh
Confidence 345899999999999985 4777888888898 5888887754
No 118
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=80.01 E-value=26 Score=37.03 Aligned_cols=41 Identities=15% Similarity=0.034 Sum_probs=33.5
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 197 a~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..++.++++.++.+||.+..+.|.++..++.+. .+|+.++.
T Consensus 282 ~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~ 322 (431)
T TIGR00479 282 DRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEV 322 (431)
T ss_pred HHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEc
Confidence 445666788889999999999999999998763 47888876
No 119
>PRK00536 speE spermidine synthase; Provisional
Probab=79.55 E-value=26 Score=34.82 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=38.3
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEE--eCC--hHHHHHHHHHHHh
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIY--HQY--LQPLATCMHSLQV 401 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVY--sp~--~epL~e~~~~L~~ 401 (452)
+.||.+|+++. .+.+....+...|+|+|-||+= ||+ .+.+..++..|+.
T Consensus 138 ~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~ 190 (262)
T PRK00536 138 KKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD 190 (262)
T ss_pred CcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh
Confidence 57999999973 4678889999999999999984 366 4445677777764
No 120
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=79.51 E-value=1.8 Score=33.59 Aligned_cols=36 Identities=33% Similarity=0.616 Sum_probs=30.5
Q ss_pred CccccccCcccccCCHHHHHHHHHcCC--------ChHHHHHHH
Q 012978 101 DNRAIVDDNKAQCLSGEDIDEMRRQGA--------TGEEIVEAL 136 (452)
Q Consensus 101 dNr~i~Dd~~~QkLs~eeI~~lK~~g~--------sG~eII~~L 136 (452)
-||.++|..+++=.|-+||.+|-++|. ||++|=..+
T Consensus 7 ~NRRLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~i 50 (64)
T PF07879_consen 7 PNRRLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSI 50 (64)
T ss_pred CCCccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHH
Confidence 499999999999999999999999994 676654443
No 121
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=78.97 E-value=12 Score=32.64 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=31.7
Q ss_pred hcCcceEEEeCC---CCChHHHHHhHHhcccCCCcEEEEeCChH
Q 012978 350 ENGFSSMIVVAP---ELDPWSFVKDLLPLLSYSAPFAIYHQYLQ 390 (452)
Q Consensus 350 ~~~~D~liia~~---~~dP~~il~~ll~~L~pS~p~VVYsp~~e 390 (452)
.+.||.++...- -.||..++..+...|+|+|-+++-.|...
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 357885555431 02799999999999999999999888764
No 122
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=78.49 E-value=36 Score=33.58 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=27.2
Q ss_pred HhcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCCceEEEee
Q 012978 201 SMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~--GlltaAv~ermgg~G~v~~~~ 239 (452)
..+++++|.+|||.+.++ |..+..+|..+|. +|+...
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~--~vi~~~ 175 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC--KVIGCA 175 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC--EEEEEe
Confidence 468899999999998654 5566667888765 466554
No 123
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=78.27 E-value=35 Score=34.80 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=28.4
Q ss_pred HHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
...+++.+|.+|||.+.++ |++++.+|..+|.. .|+.+..
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~-~Vi~~~~ 217 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGAS-RIIGVDI 217 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 3468899999999997522 66777788888642 4665543
No 124
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=77.84 E-value=25 Score=34.58 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=32.3
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHH
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSL 399 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L 399 (452)
+.||.++.. +.| ..+..+...|+|+|.|++.+|....|.++-..+
T Consensus 150 ~sfD~I~~~---~~~-~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 150 QSLDAIIRI---YAP-CKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred CceeEEEEe---cCC-CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 468855543 234 346788889999999999999887776664444
No 125
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=76.90 E-value=36 Score=34.62 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=29.7
Q ss_pred HHHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 199 LLSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
+...+++++|.+|||.+.+. |++++.+|..+|. .+|+.+..
T Consensus 179 ~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~ 220 (369)
T cd08301 179 AWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDL 220 (369)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcC
Confidence 34468999999999997532 7777888888764 35666643
No 126
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=76.83 E-value=33 Score=35.08 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=28.1
Q ss_pred HHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEee
Q 012978 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~ 239 (452)
...+++++|.+|||.+.+. |++++.+|..+|. ..|+.+.
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~ 223 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVD 223 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEc
Confidence 3568899999999987532 7777778888764 2466553
No 127
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=76.76 E-value=33 Score=37.33 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=27.5
Q ss_pred CCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 207 ANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 207 ~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
++.+||.+++++|.++.+++.++. ...|+.++.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDi 170 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDI 170 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEEC
Confidence 467999999999999999998874 357887776
No 128
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=76.70 E-value=9.8 Score=36.09 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=29.4
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEe
Q 012978 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 204 nI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~ 238 (452)
=|.||+|||-++.+.|-|.+.+.+..+-.|.=+.+
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEi 44 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEI 44 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEec
Confidence 48899999999999999999999988776654443
No 129
>PLN02740 Alcohol dehydrogenase-like
Probab=76.32 E-value=35 Score=35.06 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=28.5
Q ss_pred HhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 201 SMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+++++|.+|||++.+. |++++.+|..+|. ..|+....
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~ 231 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDI 231 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcC
Confidence 458999999999998533 7777778888764 34666543
No 130
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=75.88 E-value=36 Score=35.03 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=29.6
Q ss_pred HhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 201 SMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+.+.+|.+|||.+.+. |.+++.+|.++|- +.|+.+..
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~ 217 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDR 217 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcC
Confidence 467889999999997655 7788889998864 45666643
No 131
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=75.80 E-value=37 Score=33.50 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=27.1
Q ss_pred HHHhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEee
Q 012978 199 LLSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~~ 239 (452)
+...+++.+|+++|+.+.+ -|..+..+|.++|.. |+...
T Consensus 157 l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~--V~~~~ 196 (338)
T cd08254 157 VVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA--VIAVD 196 (338)
T ss_pred HHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCE--EEEEc
Confidence 3446789999999997542 266777788888753 65553
No 132
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=75.73 E-value=11 Score=37.84 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEee
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~ 239 (452)
...++..++..++.++|.++.+.|.++.+++.+. +.++++.+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D 180 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILN 180 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEe
Confidence 3557777888899999999999999999999986 445666553
No 133
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.48 E-value=39 Score=33.01 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=28.1
Q ss_pred HHHHhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEe
Q 012978 198 LLLSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 198 ~iL~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~ 238 (452)
+.+..+++.+|.+|||++.+ -|++++.+|..+|. ..|+..
T Consensus 111 ~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~ 151 (280)
T TIGR03366 111 AALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAA 151 (280)
T ss_pred HHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEE
Confidence 34455677799999999763 37788888887754 246655
No 134
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=75.15 E-value=35 Score=32.37 Aligned_cols=61 Identities=23% Similarity=0.338 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCcc-----cccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 174 RSICEAYFKKNPA-----RIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 174 ~~l~e~y~~Kdp~-----Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+++.|+..+-. -+...|.+.+. .+....++.++|.++.+.|.++..++.+ | ..++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~iD~ 78 (233)
T PRK05134 13 SALAARWWDPNGEFKPLHRINPLRLNYIR---EHAGGLFGKRVLDVGCGGGILSESMARL-G--ADVTGIDA 78 (233)
T ss_pred HHHHHHHhccCCCcHHHHHhhHHHHHHHH---HhccCCCCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEcC
Confidence 4556667755431 23334444333 3334567999999999999998888765 3 34655543
No 135
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=75.08 E-value=3 Score=38.39 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=26.1
Q ss_pred HhcCCCCCCeEEEEeC---CCcHHHHH--HHHHhCCC
Q 012978 201 SMGNVAANSDVLVVDM---AGGLLTGA--VAERLGGT 232 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~---~~GlltaA--v~ermgg~ 232 (452)
.-.-|.||+||+|+|+ ++|-+.|| +++|+|++
T Consensus 115 q~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~ 151 (183)
T KOG1712|consen 115 QKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAE 151 (183)
T ss_pred eccccCCCCeEEEEechhhcCccHHHHHHHHHHhccE
Confidence 4456899999999998 78888777 57888874
No 136
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=74.61 E-value=43 Score=34.01 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=27.6
Q ss_pred HhcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCCceEEEe
Q 012978 201 SMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~--GlltaAv~ermgg~G~v~~~ 238 (452)
..+++++|.+|||.+..+ |.++..+|..+|. +|+..
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~--~Vi~~ 189 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC--YVVGS 189 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC--EEEEE
Confidence 357899999999998743 7777788888875 46554
No 137
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=74.45 E-value=44 Score=32.70 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=35.7
Q ss_pred CcceEEEeCCCCCh---------HHHHHhHHhcccCCCcEEEE--eCChHH--HHHHHHHHHh
Q 012978 352 GFSSMIVVAPELDP---------WSFVKDLLPLLSYSAPFAIY--HQYLQP--LATCMHSLQV 401 (452)
Q Consensus 352 ~~D~liia~~~~dP---------~~il~~ll~~L~pS~p~VVY--sp~~ep--L~e~~~~L~~ 401 (452)
.||.+|+++. || .+.++.+...|+|+|-+|+. ||+..+ +......|+.
T Consensus 150 ~yDvIi~D~~--dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~ 210 (246)
T PF01564_consen 150 KYDVIIVDLT--DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRS 210 (246)
T ss_dssp -EEEEEEESS--STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHT
T ss_pred cccEEEEeCC--CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHH
Confidence 7999999985 66 47789999999999999976 565443 4555566664
No 138
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=74.23 E-value=3.4 Score=40.81 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=42.0
Q ss_pred HHHHhcCcccccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHH----HHHHHHHhCC----CceEEEeec
Q 012978 178 EAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLL----TGAVAERLGG----TGYVCNTCI 240 (452)
Q Consensus 178 e~y~~Kdp~Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~Gll----taAv~ermgg----~G~v~~~~~ 240 (452)
+.||-++|.-...|+-..+..++......++-||+.++.+.|-- +..+++.++. ...|+....
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Di 140 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDI 140 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEEC
Confidence 46677777766667666666666655556678999999999974 4445555442 346666654
No 139
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=74.09 E-value=7.4 Score=38.95 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=40.2
Q ss_pred hhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 193 ~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
++.+.||..-|.++|+.-||+++-|-|-||-+++|+ --+|+.++.
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~ 88 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEI 88 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEec
Confidence 589999999999999999999999999999999997 236777764
No 140
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=72.63 E-value=48 Score=33.32 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=26.9
Q ss_pred hcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 350 ENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
..++|.+++++- -.+ ..+...+.+|+++|.+|+|..+
T Consensus 226 ~~~~d~~v~d~~-G~~-~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 226 ELRFDQLILETA-GVP-QTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred CCCCCeEEEECC-CCH-HHHHHHHHHhhcCCEEEEEccC
Confidence 346887777763 233 4678888999999999988644
No 141
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=72.29 E-value=49 Score=33.58 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=27.4
Q ss_pred HHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
...+++++|.+|||.+.+. |+++..+|..+|.. +|+....
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~-~Vi~~~~ 209 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGAS-KIIAVDI 209 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcC
Confidence 3457899999999997522 66677778877532 4665543
No 142
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=72.06 E-value=16 Score=34.51 Aligned_cols=30 Identities=23% Similarity=-0.003 Sum_probs=23.8
Q ss_pred eEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 210 DVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 210 rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+||.++.+.|.++..++++.+ .+.|+.++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~ 31 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTI 31 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEEC
Confidence 789999999999999988774 356776654
No 143
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=72.00 E-value=31 Score=37.64 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=65.4
Q ss_pred cccCCHHHHHHHHHcCC--------ChHHHHHHHHhccccccccccccHHHHHH--HhhhccCCcEEEeCCCh-----HH
Q 012978 111 AQCLSGEDIDEMRRQGA--------TGEEIVEALIANSATFEKKTSFSQEKYKL--KKQKKYAPKVLLRRPFA-----RS 175 (452)
Q Consensus 111 ~QkLs~eeI~~lK~~g~--------sG~eII~~LvenS~tF~~KT~FSqeKYlk--kK~kKy~~~~~i~~pt~-----~~ 175 (452)
-+..+.+|+..||+..+ .-.|++++|++.. =|.|+-|---+ |-+ .+-++.+.. +.
T Consensus 72 V~~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~-----it~ia~e~vpr~sraq-----~~d~lssma~IAGy~A 141 (509)
T PRK09424 72 VNAPSDDEIALLREGATLVSFIWPAQNPELLEKLAARG-----VTVLAMDAVPRISRAQ-----SLDALSSMANIAGYRA 141 (509)
T ss_pred eCCCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcC-----CEEEEeecccccccCC-----CcccccchhhhhHHHH
Confidence 37778899999987642 3577888887753 23333332110 101 111221111 11
Q ss_pred H--HHHHHhcCcccccccchhHHHHHHHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 176 I--CEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 176 l--~e~y~~Kdp~Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
+ +-.+|.+. +..+.+.+++.+|.+|+|++.+- |+.+...|.++|. .|+.+..
T Consensus 142 v~~aa~~~~~~-----------~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~ 196 (509)
T PRK09424 142 VIEAAHEFGRF-----------FTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDT 196 (509)
T ss_pred HHHHHHHhccc-----------CCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeC
Confidence 1 11345553 45666777889999999999955 9999999999987 5776655
No 144
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=71.63 E-value=1e+02 Score=30.52 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 198 ~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
++.+++.+...+|+|.++++.|++.-+++.|-.. -.|+.++..
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq 77 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQ 77 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeC
Confidence 4557888888999999999999999999999654 578888774
No 145
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=71.53 E-value=36 Score=34.56 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=26.6
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 206 AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 206 ~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
++|.+||-++++||+|+-|++. +|. .+++.+..
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~k-LGA-~~v~g~Di 193 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAK-LGA-KKVVGVDI 193 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHH-cCC-ceEEEecC
Confidence 4899999999999999888865 654 47887755
No 146
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=71.31 E-value=49 Score=34.44 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=29.5
Q ss_pred hcCCCCCCeEEEEeCC--CcHHHHHHHHHhC-CCceEEEeec
Q 012978 202 MGNVAANSDVLVVDMA--GGLLTGAVAERLG-GTGYVCNTCI 240 (452)
Q Consensus 202 ~anI~~g~rvLv~d~~--~GlltaAv~ermg-g~G~v~~~~~ 240 (452)
.+++++|++|+|++.+ -|+++..+|..+| |-++|+....
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~ 211 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDV 211 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcC
Confidence 4789999999999843 4888888888886 4456776644
No 147
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=71.06 E-value=45 Score=33.55 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=27.5
Q ss_pred HHhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCCCceEEEee
Q 012978 200 LSMGNVAANSDVLVVDM-AGGLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~-~~GlltaAv~ermgg~G~v~~~~ 239 (452)
+..+++++|.+|||.+. +.|++++.+|..+|. +|+...
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~--~vi~~~ 196 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQGA--TVHVMT 196 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC--eEEEEe
Confidence 45689999999999985 336667777787764 465553
No 148
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=70.75 E-value=65 Score=32.85 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=29.1
Q ss_pred HHhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEeec
Q 012978 200 LSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~~~ 240 (452)
...+++++|.+|||.+.+ -|++++.+|..+|. ..|+....
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~ 219 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDI 219 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeC
Confidence 345889999999999752 27778888888864 35666543
No 149
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=69.67 E-value=30 Score=36.85 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.2
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 197 a~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..|+.+....++.++|.++.+.|.++..++++. +.|+.+..
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~ 67 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDF 67 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeC
Confidence 455666666778999999999999999999872 47777754
No 150
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=69.24 E-value=11 Score=36.71 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=37.7
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+..|+..+++.+|.+||+++.|.|.+|.+++++. ..|+.++.
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~ 59 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEI 59 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEEC
Confidence 457889999999999999999999999999999985 24777765
No 151
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=69.13 E-value=12 Score=36.63 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=37.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
..+..|+..+++.+|.+||+++.|.|.+|..++++ + +.|+.++..
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~--~~v~~vEid 60 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-A--KKVYAIELD 60 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-C--CEEEEEECC
Confidence 44667788889999999999999999999999998 3 478877763
No 152
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=68.93 E-value=71 Score=31.95 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=27.6
Q ss_pred HhcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCCceEEEee
Q 012978 201 SMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~--GlltaAv~ermgg~G~v~~~~ 239 (452)
..+++++|.+|||.+..+ |.++..+|..+|. +|+...
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~--~Vi~~~ 183 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC--YVVGSA 183 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC--EEEEEe
Confidence 458999999999998644 6667778888876 455543
No 153
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=68.91 E-value=8.3 Score=37.93 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=38.4
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecC
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~ 241 (452)
..+-.|+..+++.++..||+++-|.|.+|.+++++. ..++.++..
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d 61 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEID 61 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESS
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCc
Confidence 345667788888899999999999999999999986 688888863
No 154
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=68.01 E-value=29 Score=32.86 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=29.5
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 205 I~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.++.+||.++.+.|.++.++++++++ +.++.+..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDi 75 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPF-KHIYGVEI 75 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEEC
Confidence 567889999999999999999887743 67888865
No 155
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=67.86 E-value=19 Score=35.87 Aligned_cols=32 Identities=19% Similarity=-0.009 Sum_probs=25.3
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 206 AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 206 ~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.+++++|.++.|.|..+..++.+ | +.|+.+..
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~-g--~~V~avD~ 150 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL-G--FDVTAVDI 150 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC-C--CEEEEEEC
Confidence 34569999999999999998885 3 47777755
No 156
>PLN02827 Alcohol dehydrogenase-like
Probab=67.76 E-value=73 Score=32.82 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=26.0
Q ss_pred hcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEee
Q 012978 202 MGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 202 ~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~ 239 (452)
.+++++|.+|||.+.+. |+++..++..+|.. .|+...
T Consensus 188 ~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~-~vi~~~ 225 (378)
T PLN02827 188 VADVSKGSSVVIFGLGTVGLSVAQGAKLRGAS-QIIGVD 225 (378)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEC
Confidence 47899999999997522 66777778877642 355443
No 157
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=67.51 E-value=92 Score=29.81 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 204 nI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
=++||.+||.++-.-|.-+-...+|.++.|.|+.+..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 3578999999999999999999999999999998864
No 158
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=67.50 E-value=7.3 Score=38.82 Aligned_cols=43 Identities=28% Similarity=0.232 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+-.|+..++|+||.+||.++.+-|-++-.++++-|. +|..+..
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~--~v~gitl 93 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC--HVTGITL 93 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc--EEEEEEC
Confidence 578899999999999999999999999999999854 5666654
No 159
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=66.83 E-value=88 Score=31.95 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=28.0
Q ss_pred HhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEee
Q 012978 201 SMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~ 239 (452)
..+++++|.+|||.+.+. |+++..+|..+|. .+|+...
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~ 217 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAID 217 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEc
Confidence 468899999999997532 7777788888865 2466553
No 160
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=66.60 E-value=93 Score=30.97 Aligned_cols=38 Identities=29% Similarity=0.567 Sum_probs=26.0
Q ss_pred HhcCCCCC--CeEEEEeCCC--cHHHHHHHHHhCCCceEEEee
Q 012978 201 SMGNVAAN--SDVLVVDMAG--GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 201 ~~anI~~g--~rvLv~d~~~--GlltaAv~ermgg~G~v~~~~ 239 (452)
..+++++| .+|||.+.++ |..+..+|..+|. .+|+...
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~ 187 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGC-SRVVGIC 187 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEc
Confidence 46778887 8999998755 5555667777754 2466554
No 161
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=66.03 E-value=5 Score=31.56 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=25.8
Q ss_pred hcCcceEEEeCCC---CChHHHHHhHHhcccCCCcEEE
Q 012978 350 ENGFSSMIVVAPE---LDPWSFVKDLLPLLSYSAPFAI 384 (452)
Q Consensus 350 ~~~~D~liia~~~---~dP~~il~~ll~~L~pS~p~VV 384 (452)
.+.||.++...-- .+|..++..+...|+|+|.+++
T Consensus 58 ~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 58 DNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 3578877665411 2677889999999999999886
No 162
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.27 E-value=1.1e+02 Score=28.74 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=26.9
Q ss_pred hcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 350 ENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
.+++|.+|-.+. ....+..++..|+++|.|+.++..
T Consensus 199 ~~~~d~vi~~~~---~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 199 GGGADVVIDAVG---GPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CCCCCEEEECCC---CHHHHHHHHHhcccCCEEEEEccC
Confidence 457896665442 226788889999999999998865
No 163
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=65.21 E-value=14 Score=37.23 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=37.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+..|+..+++.+|.+||.++.+.|.+|.+++++ + ++|+.++.
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~--~~V~avEi 66 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-A--KKVIAIEI 66 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-C--CcEEEEEC
Confidence 45678899999999999999999999999999987 2 46777765
No 164
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=65.17 E-value=81 Score=32.82 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=24.9
Q ss_pred HHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCC
Q 012978 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGG 231 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~-GlltaAv~ermgg 231 (452)
+..+++++|.+|||.+.+. |+++..+|..+|.
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga 210 (393)
T TIGR02819 178 AVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGA 210 (393)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 3458899999999976533 7788888888875
No 165
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=64.93 E-value=18 Score=35.06 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=52.4
Q ss_pred cccchHHHHHHhhhcCcceEEEeCC-----------CCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHh
Q 012978 337 GEKASQETLKLWKENGFSSMIVVAP-----------ELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQV 401 (452)
Q Consensus 337 ~~~~~~~~~~~~~~~~~D~liia~~-----------~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~ 401 (452)
....++..++.+.+.|+|.+++.|. -.+|-.++..+...|.+++.+-|..|-.||......+-+.
T Consensus 72 v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~~ 147 (221)
T PF07302_consen 72 VEPRLQACIAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQP 147 (221)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHHh
Confidence 3445677777888889999888872 2358899999999999999999999999999876666543
No 166
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=64.22 E-value=15 Score=36.39 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 195 MLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 195 tLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.+.-|+..|++.++..||++|-|.|.||-.++++. .+|+.++.
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEi 60 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEI 60 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEe
Confidence 37889999999999999999999999999999985 35777765
No 167
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=64.22 E-value=83 Score=31.76 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=29.1
Q ss_pred HhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 201 SMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+++++|.+|||.+.+. |+++..+|..+|. +|+....
T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~--~vi~~~~ 198 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA--AVVAIDI 198 (349)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEcC
Confidence 457899999999998733 7888888888875 5665543
No 168
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=63.81 E-value=65 Score=32.42 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=28.0
Q ss_pred HHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
+..+++.+|.+|||.+.++ |+++..+|..+|. .+|+....
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~ 202 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADV 202 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeC
Confidence 4456777999999998633 7778888888864 25655543
No 169
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=63.76 E-value=1.2e+02 Score=30.53 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=28.5
Q ss_pred HHhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEeec
Q 012978 200 LSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+..+++++|.+|||.+.+ -|+.++.++..+|. ..++....
T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~ 199 (351)
T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGS 199 (351)
T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeC
Confidence 456889999999999642 27778888888764 34555433
No 170
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=62.70 E-value=12 Score=32.84 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=42.2
Q ss_pred hcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHH
Q 012978 350 ENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSL 399 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L 399 (452)
...+|.+||+++.++=.++++.+.+++.+..++|+..+-...+..+...+
T Consensus 65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 46899999999888889999999999999999999999888776555555
No 171
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=62.61 E-value=1.2e+02 Score=30.77 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=26.2
Q ss_pred HHhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCCCceEEEe
Q 012978 200 LSMGNVAANSDVLVVDM-AGGLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~-~~GlltaAv~ermgg~G~v~~~ 238 (452)
...+++.+|.+|||.+. .-|++++.+|..+|.. .|+..
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~-~v~~~ 214 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGAS-RIIAV 214 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEE
Confidence 45689999999999854 2266777777877643 34443
No 172
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=62.58 E-value=1.2e+02 Score=29.57 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=27.4
Q ss_pred HHhcCCCCCCeEEEEeCC--CcHHHHHHHHHhCCCceEEEe
Q 012978 200 LSMGNVAANSDVLVVDMA--GGLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~--~GlltaAv~ermgg~G~v~~~ 238 (452)
+..+++.+|.+|||.+.+ -|..++.+|..+|- .++..
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~--~v~~~ 170 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI--NVINL 170 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC--eEEEE
Confidence 345789999999998754 37777888888875 34444
No 173
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=59.47 E-value=1e+02 Score=32.31 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=34.9
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHH
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPL 392 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL 392 (452)
..||-++++- -..|.+.++.++..++.+|-+.|.|.-..+|
T Consensus 113 ~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vTaTD~~~L 153 (374)
T TIGR00308 113 RKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVTATDTSAL 153 (374)
T ss_pred CCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEEecccHHh
Confidence 5699888874 5668899999999999999999998877777
No 174
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=59.32 E-value=1.1e+02 Score=28.86 Aligned_cols=34 Identities=15% Similarity=0.023 Sum_probs=26.6
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 205 I~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
...|.+||.+.+++|.++.+++.|- -+.|+.++.
T Consensus 51 ~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~ 84 (199)
T PRK10909 51 VIVDARCLDCFAGSGALGLEALSRY--AAGATLLEM 84 (199)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEEC
Confidence 3468899999999999998766663 357888866
No 175
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=59.19 E-value=1.5e+02 Score=28.73 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=27.5
Q ss_pred HhcCCCCCCeEEEEeCC--CcHHHHHHHHHhCCCceEEEee
Q 012978 201 SMGNVAANSDVLVVDMA--GGLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~--~GlltaAv~ermgg~G~v~~~~ 239 (452)
..+++++|.+|||.+.+ -|.++..+|..+|-. |+...
T Consensus 136 ~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~--v~~~~ 174 (320)
T cd08243 136 RSLGLQPGDTLLIRGGTSSVGLAALKLAKALGAT--VTATT 174 (320)
T ss_pred HhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCE--EEEEe
Confidence 35678999999999863 477788888888753 55553
No 176
>PF08616 SPA: Stabilization of polarity axis
Probab=58.89 E-value=14 Score=31.85 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=42.4
Q ss_pred HHhHHhcccCCCcEEEEeCChHH--HHHHHHHHHhccCccceeeeeeeeeeeeecCCCCCCCCcccC------ceEEEE
Q 012978 369 VKDLLPLLSYSAPFAIYHQYLQP--LATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHPCMQMSG------CGGYIL 439 (452)
Q Consensus 369 l~~ll~~L~pS~p~VVYsp~~ep--L~e~~~~L~~~~~~v~l~l~E~~lR~yQVLP~RTHP~m~m~~------~~GyiL 439 (452)
+..++.+|--+.|+|||++.... +.++..+|.. .+.. ...++-..++.||.++.+. ..|||+
T Consensus 15 i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~---Li~p------~~~~~~~~~~~~PY~~i~~~~~l~~~~~~I~ 84 (113)
T PF08616_consen 15 IILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCS---LISP------GQDLRYFSNRYFPYFTISDLDELKSCPGYIA 84 (113)
T ss_pred HHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHH---HHCc------ccchhcccccccceeechhhhhhccCCCEEE
Confidence 45568888899999999988777 8888888864 3333 1222334566688887754 456665
No 177
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=58.75 E-value=1.7e+02 Score=29.97 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=26.8
Q ss_pred HHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
...+++++|.+|||.+.+. |++++.+|..+|. ..|+....
T Consensus 183 ~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~ 223 (373)
T cd08299 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGA-SRIIAVDI 223 (373)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcC
Confidence 4568999999999996422 5566666777653 25666543
No 178
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=57.87 E-value=7.6 Score=33.32 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHcCCC-hHHHHHHHHhcc-------ccccccccccHHHHHHHhh
Q 012978 113 CLSGEDIDEMRRQGAT-GEEIVEALIANS-------ATFEKKTSFSQEKYKLKKQ 159 (452)
Q Consensus 113 kLs~eeI~~lK~~g~s-G~eII~~LvenS-------~tF~~KT~FSqeKYlkkK~ 159 (452)
+.+.++|+.|+..|.. ..++.+...... ..-..++.|-++||..|+.
T Consensus 50 ~w~~~~i~~~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~fI~~KY~~k~f 104 (112)
T smart00105 50 TWTEEELRLLQKGGNENANSIWESNLDDFSLKPPDSDDQQKYESFIAAKYEEKLF 104 (112)
T ss_pred CCCHHHHHHHHHhhhHHHHHHHHhhCCccccCCCCCchHHHHHHHHHHHHHhhhc
Confidence 5788999999987763 455665554332 2457788899999987643
No 179
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=57.48 E-value=82 Score=30.25 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=27.9
Q ss_pred hhHHHHHHHhcCCCCCCeEEEEeCCC---cHHHHHHHHHhCCCceEEEeecC
Q 012978 193 VDMLSLLLSMGNVAANSDVLVVDMAG---GLLTGAVAERLGGTGYVCNTCIG 241 (452)
Q Consensus 193 ~DtLa~iL~~anI~~g~rvLv~d~~~---GlltaAv~ermgg~G~v~~~~~~ 241 (452)
.|..++=...-.++| ..+++.+... -+.-|.|++.+|+.|+|+.+...
T Consensus 19 ~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 19 QDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 455555555556677 6788888733 24467789999999999999874
No 180
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=57.22 E-value=63 Score=24.68 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=25.4
Q ss_pred cCcceEEEeCCCCC-----hHHHHHhHHhcccCCCcEEEE
Q 012978 351 NGFSSMIVVAPELD-----PWSFVKDLLPLLSYSAPFAIY 385 (452)
Q Consensus 351 ~~~D~liia~~~~d-----P~~il~~ll~~L~pS~p~VVY 385 (452)
+++|.++...+ .+ +..++..+.+.|+++|.|++-
T Consensus 65 ~~~d~i~~~~~-~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 65 ESFDVIISDPP-LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CceEEEEEccc-eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 57887766553 33 478889999999999988754
No 181
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=57.01 E-value=1.7e+02 Score=29.31 Aligned_cols=42 Identities=17% Similarity=0.039 Sum_probs=32.8
Q ss_pred HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCC-----ceEEEeec
Q 012978 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGT-----GYVCNTCI 240 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~-----G~v~~~~~ 240 (452)
.....+...|.++|-+..+.|-++--+++.++.. ++|.....
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di 138 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI 138 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC
Confidence 3445666788999999999999999999999763 66666544
No 182
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=56.10 E-value=1.7e+02 Score=29.40 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=23.8
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
.++| +++++- -....+...+..|++.|.|+.+..+
T Consensus 248 ~~~d-~vid~~--g~~~~~~~~~~~l~~~G~~v~~g~~ 282 (361)
T cd08231 248 RGAD-VVIEAS--GHPAAVPEGLELLRRGGTYVLVGSV 282 (361)
T ss_pred CCCc-EEEECC--CChHHHHHHHHHhccCCEEEEEcCC
Confidence 4688 555441 1235677888888888888888754
No 183
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=55.63 E-value=1.7e+02 Score=29.99 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=27.4
Q ss_pred hcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 350 ENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
..++| +||++ .-.+...+...+..|+++|.|+.++..
T Consensus 273 g~gvD-vvld~-~g~~~~~~~~~~~~l~~~G~~v~~g~~ 309 (384)
T cd08265 273 GWGAD-IQVEA-AGAPPATIPQMEKSIAINGKIVYIGRA 309 (384)
T ss_pred CCCCC-EEEEC-CCCcHHHHHHHHHHHHcCCEEEEECCC
Confidence 34688 55665 345567888899999999999988643
No 184
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=53.54 E-value=2.3e+02 Score=27.80 Aligned_cols=36 Identities=33% Similarity=0.519 Sum_probs=26.8
Q ss_pred hcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCCceEEEee
Q 012978 202 MGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 202 ~anI~~g~rvLv~d~~~--GlltaAv~ermgg~G~v~~~~ 239 (452)
.+.+++|.++||.+.++ |..+..++.++|. .|+...
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~--~v~~~~ 171 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC--HVIGTC 171 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC--eEEEEe
Confidence 47889999999998544 6677778888865 355554
No 185
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=51.46 E-value=1.1e+02 Score=31.25 Aligned_cols=35 Identities=31% Similarity=0.318 Sum_probs=26.9
Q ss_pred HHHHHh-cCCCCCCeEEEEeCCC--cHHHHHHHHHhCC
Q 012978 197 SLLLSM-GNVAANSDVLVVDMAG--GLLTGAVAERLGG 231 (452)
Q Consensus 197 a~iL~~-anI~~g~rvLv~d~~~--GlltaAv~ermgg 231 (452)
-++|.. +.+++|.+|||.+-++ |.++..+|..+|.
T Consensus 131 ~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~ 168 (326)
T COG0604 131 WLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA 168 (326)
T ss_pred HHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC
Confidence 344444 7899999999999755 6677778888876
No 186
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=51.06 E-value=2.4e+02 Score=28.08 Aligned_cols=38 Identities=39% Similarity=0.442 Sum_probs=25.4
Q ss_pred HHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEe
Q 012978 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~ 238 (452)
+..+++++|.++||.+.++ |..+..+|..+|.. .|+..
T Consensus 155 ~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~-~v~~~ 193 (343)
T cd05285 155 CRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGAT-KVVVT 193 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc-EEEEE
Confidence 4688999999999965422 55666677776642 25444
No 187
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=50.44 E-value=34 Score=35.92 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=43.5
Q ss_pred hHHHHHHHhcCC-CCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeecCCCC
Q 012978 194 DMLSLLLSMGNV-AANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCIGDSL 244 (452)
Q Consensus 194 DtLa~iL~~anI-~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~~~~~ 244 (452)
-|+|+--+.+|+ .||+||||+.++. |---+=+++|.|.+=.++....|..+
T Consensus 65 Gt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v 117 (383)
T COG0075 65 GTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAV 117 (383)
T ss_pred cHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCC
Confidence 457888888887 5899999999966 98999999999998888888888765
No 188
>PRK15219 carbonic anhydrase; Provisional
Probab=49.98 E-value=31 Score=33.97 Aligned_cols=98 Identities=21% Similarity=0.280 Sum_probs=61.9
Q ss_pred cCCChHHHHHHHHhccccccccccccHHHHHHHhh---hccCCcEEEeCC-ChHHHHHHHHhcCcccccccch-------
Q 012978 125 QGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQ---KKYAPKVLLRRP-FARSICEAYFKKNPARIGFLRV------- 193 (452)
Q Consensus 125 ~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~---kKy~~~~~i~~p-t~~~l~e~y~~Kdp~Ki~~lR~------- 193 (452)
..++.++.++.|+++...|...+ |.+..|..++. +.-...+.++-+ ..|.-.+.+|...|.-+.-+|.
T Consensus 49 ~~~~p~~al~~L~~GN~rF~~~~-~~~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~ 127 (245)
T PRK15219 49 DKMTPDQIIESLKQGNKRFRSGK-PAQHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND 127 (245)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC-cCCchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc
Confidence 46788999999999999998855 34444543211 222345666666 5677778999888876666662
Q ss_pred hHHHHH---HHhcCCCCCCeEEEEeCCC-cHHHHHHH
Q 012978 194 DMLSLL---LSMGNVAANSDVLVVDMAG-GLLTGAVA 226 (452)
Q Consensus 194 DtLa~i---L~~anI~~g~rvLv~d~~~-GlltaAv~ 226 (452)
|.+|-| +...+| ..++|+++++ |.+.||+-
T Consensus 128 ~~~~slEyAv~~L~v---~~IvVlGHt~CGav~Aa~~ 161 (245)
T PRK15219 128 DLLGSMEFACAVAGA---KVVLVMGHTACGAVKGAID 161 (245)
T ss_pred chhhHHHHHHHHcCC---CEEEEecCCcchHHHHHHh
Confidence 334433 333333 4677778744 66666663
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=49.46 E-value=1e+02 Score=28.82 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=40.7
Q ss_pred hcCcceEEEeCCCCChH-HHHHhHHhcccCCCcEEEEe--CChHHHHHHHHHHHhccCccceeeeee
Q 012978 350 ENGFSSMIVVAPELDPW-SFVKDLLPLLSYSAPFAIYH--QYLQPLATCMHSLQVRKMAIGLQISEP 413 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~-~il~~ll~~L~pS~p~VVYs--p~~epL~e~~~~L~~~~~~v~l~l~E~ 413 (452)
...||.++-= ..-|. .++.-+.|+|+++|.++.|- .+.+-+.++-..++.. .....++.+.
T Consensus 113 ~~~fd~v~aR--Av~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~-~~~~~~v~~~ 176 (184)
T PF02527_consen 113 RESFDVVTAR--AVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKL-GLKVLSVPEF 176 (184)
T ss_dssp TT-EEEEEEE--SSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCC-CEEEEEEEEE
T ss_pred CCCccEEEee--hhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHh-CCEEeeeccc
Confidence 4678855543 44454 66888999999999999998 6677788887777753 3555555444
No 190
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=49.21 E-value=2.5e+02 Score=27.79 Aligned_cols=37 Identities=32% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEe
Q 012978 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~ 238 (452)
+..+++.+|.++|+...+. |..++.+|..+|. +|+..
T Consensus 152 ~~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~--~v~~~ 189 (337)
T cd08261 152 VRRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA--RVIVV 189 (337)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEE
Confidence 3567899999999995322 5566677888764 45555
No 191
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=49.10 E-value=2.5e+02 Score=28.12 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=25.6
Q ss_pred HHhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEe
Q 012978 200 LSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~ 238 (452)
|..+++.+|.+|||.+.+ -|.+++.++..+|. ..|+..
T Consensus 165 l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~-~~v~~~ 203 (351)
T cd08233 165 VRRSGFKPGDTALVLGAGPIGLLTILALKAAGA-SKIIVS 203 (351)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEE
Confidence 367889999999999742 25566667777643 245544
No 192
>PRK10083 putative oxidoreductase; Provisional
Probab=48.86 E-value=2.2e+02 Score=28.11 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=24.3
Q ss_pred HHHhcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCCceEEEe
Q 012978 199 LLSMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~~--GlltaAv~ermgg~G~v~~~ 238 (452)
....+++++|.+|||.+ ++ |+.+..++.++-|-..++..
T Consensus 152 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~ 192 (339)
T PRK10083 152 VTGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVA 192 (339)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEE
Confidence 34567899999999998 44 44444455543233345544
No 193
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=48.73 E-value=2.7e+02 Score=27.23 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=27.3
Q ss_pred HhcCCCCCCeEEEEeCC--CcHHHHHHHHHhCCCceEEEee
Q 012978 201 SMGNVAANSDVLVVDMA--GGLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~--~GlltaAv~ermgg~G~v~~~~ 239 (452)
..+.+.+|.+||+.+.+ -|..++.++.++|. .|+...
T Consensus 139 ~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~--~vi~~~ 177 (329)
T cd05288 139 EIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA--RVVGIA 177 (329)
T ss_pred hccCCCCCCEEEEecCcchHHHHHHHHHHHcCC--EEEEEe
Confidence 45778999999999853 47777788888865 455543
No 194
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=48.67 E-value=2.8e+02 Score=27.57 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=25.9
Q ss_pred HhcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCCceEEEeec
Q 012978 201 SMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~--GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+.+++|.+|||.+ ++ |..+..+|..+|- +|+....
T Consensus 157 ~~~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~--~vi~~~~ 195 (333)
T cd08296 157 RNSGAKPGDLVAVQG-IGGLGHLAVQYAAKMGF--RTVAISR 195 (333)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCC--eEEEEeC
Confidence 335789999999998 44 6666667777765 4555533
No 195
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=48.23 E-value=2.3e+02 Score=27.63 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=27.1
Q ss_pred HHHHhcCCCCCCeEEEEeC-CCcHHHHHHHHHhCCCceEEEee
Q 012978 198 LLLSMGNVAANSDVLVVDM-AGGLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 198 ~iL~~anI~~g~rvLv~d~-~~GlltaAv~ermgg~G~v~~~~ 239 (452)
.+...+.+++|..+++... .-|..++.++..+|.. |+...
T Consensus 151 ~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~--v~~~~ 191 (336)
T cd08276 151 ALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGAR--VIATS 191 (336)
T ss_pred HHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCE--EEEEe
Confidence 3445678999999999854 3366677777777653 55443
No 196
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=48.08 E-value=2.6e+02 Score=26.94 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=23.9
Q ss_pred HHhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEe
Q 012978 200 LSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~ 238 (452)
+..+++++|.++||...+ -|..++.+|.++|-. .|+..
T Consensus 122 ~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~-~v~~~ 160 (312)
T cd08269 122 FRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGAR-RVIAI 160 (312)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc-EEEEE
Confidence 447899999999999531 144455566666432 25544
No 197
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=47.89 E-value=2.9e+02 Score=27.35 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=24.6
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
.++| +++++. .+...+..++..|+++|.|+.+...
T Consensus 226 ~~~d-~vld~~--g~~~~~~~~~~~l~~~G~~v~~g~~ 260 (343)
T cd08236 226 RGAD-LVIEAA--GSPATIEQALALARPGGKVVLVGIP 260 (343)
T ss_pred CCCC-EEEECC--CCHHHHHHHHHHhhcCCEEEEEccc
Confidence 4588 555542 3446778889999999999888643
No 198
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=47.77 E-value=3e+02 Score=27.89 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=27.1
Q ss_pred HHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEee
Q 012978 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~ 239 (452)
...+++.+|.+||+.+.++ |.++..++.++|-. .++...
T Consensus 179 ~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~-~v~~~~ 218 (365)
T cd08278 179 LNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCT-TIIAVD 218 (365)
T ss_pred hhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEe
Confidence 3457899999999996532 67777788887643 455443
No 199
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=47.53 E-value=40 Score=34.13 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
|.-+|...++.||+.|+-+.-|.|--|.++++++++.|+|+.+..
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~ 52 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDR 52 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcC
Confidence 566778888899998877777889999999999988999999975
No 200
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=47.24 E-value=32 Score=33.17 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=38.4
Q ss_pred HHHHHHhcC---CCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCC
Q 012978 196 LSLLLSMGN---VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (452)
Q Consensus 196 La~iL~~an---I~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~ 242 (452)
-|.||.-.. |++|++||-.+..+|--+.-++.-.| +|.||.++-..
T Consensus 62 aAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~ 110 (231)
T COG1889 62 AAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSP 110 (231)
T ss_pred HHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecc
Confidence 355655444 68999999999999999999999988 99999997643
No 201
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=47.09 E-value=1e+02 Score=25.86 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=29.1
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCCh
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYL 389 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~ 389 (452)
+++|.+|-.+. . ...++..+..|+++|.+|++.-+.
T Consensus 57 ~~~d~vid~~g--~-~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVG--S-GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSS--S-HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecC--c-HHHHHHHHHHhccCCEEEEEEccC
Confidence 48996666553 2 479999999999999999998875
No 202
>PRK06201 hypothetical protein; Validated
Probab=47.08 E-value=49 Score=31.95 Aligned_cols=58 Identities=28% Similarity=0.379 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEeCCC-------cHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCH
Q 012978 195 MLSLLLSMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (452)
Q Consensus 195 tLa~iL~~anI~~g~rvLv~d~~~-------GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~ 257 (452)
.+...-.+..+.||+ |||+|..+ |=+.+..+.+.|-.|.|+.-..+| ++.++.|+||-
T Consensus 67 ~~~~~~ai~~~~pG~-VlVid~~g~~~~a~~G~~~a~~a~~~G~~G~VidG~vRD----~~~i~~~~fPv 131 (221)
T PRK06201 67 NLMIHRALDLARPGD-VIVVDGGGDLTNALVGEIMLAIAARRGVAGVVIDGAVRD----VAALREMGFPV 131 (221)
T ss_pred cHHHHHHHhccCCCc-EEEEECCCCCCccchhHHHHHHHHHCCCeEEEEeeccCC----HHHHhhCCCCe
Confidence 344334455677877 88887532 666777788889999998876665 35567777774
No 203
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=46.96 E-value=1.9e+02 Score=28.50 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=26.8
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCCh
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYL 389 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~ 389 (452)
.++| +++++- ..-..+...+..|+++|.||.++...
T Consensus 232 ~~vd-~vld~~--g~~~~~~~~~~~l~~~G~~v~~g~~~ 267 (306)
T cd08258 232 DGAD-VVIECS--GAVPALEQALELLRKGGRIVQVGIFG 267 (306)
T ss_pred CCCC-EEEECC--CChHHHHHHHHHhhcCCEEEEEcccC
Confidence 4688 566652 23467888899999999999887754
No 204
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=45.25 E-value=3e+02 Score=27.18 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=24.7
Q ss_pred HHHhcCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEe
Q 012978 199 LLSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 199 iL~~anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~ 238 (452)
.+..+++.+|.+|||...+. |..+..+|..+|- .+|+..
T Consensus 159 ~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~ 198 (344)
T cd08284 159 GAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAV 198 (344)
T ss_pred hhHhcCCccCCEEEEECCcHHHHHHHHHHHHcCC-ceEEEE
Confidence 34457889999999995321 4455556666652 256555
No 205
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=45.08 E-value=2.8e+02 Score=26.47 Aligned_cols=36 Identities=36% Similarity=0.303 Sum_probs=26.6
Q ss_pred HhcCCCCCCeEEEEeCC--CcHHHHHHHHHhCCCceEEEe
Q 012978 201 SMGNVAANSDVLVVDMA--GGLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~--~GlltaAv~ermgg~G~v~~~ 238 (452)
..+.+.+|++|||.+.+ -|..+..++..+|. .|+..
T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~--~v~~~ 167 (320)
T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA--TVIGT 167 (320)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC--EEEEE
Confidence 35788999999999854 36677778888874 35544
No 206
>KOG3387 consensus 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=43.58 E-value=90 Score=27.62 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=46.2
Q ss_pred HHhhhcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeee
Q 012978 346 KLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPW 414 (452)
Q Consensus 346 ~~~~~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~ 414 (452)
+.+.++-.--+|+|+ .-+|.+|..+|--+...-...+||.|....|--.+-.+-..+..+..++++.|
T Consensus 44 k~Lnrgi~~~Vv~aa-D~kP~eIt~HLp~LcedknVp~v~Vpsk~alG~~cg~~~~~r~~~a~~i~~~~ 111 (131)
T KOG3387|consen 44 KTLNRGISEFVVMAA-DVKPLEITLHLPLLCEDKNVPYVFVPSKQALGLACGELVVLRPVIACSITTNE 111 (131)
T ss_pred hhhccCceeEEEEEc-cCCHHHHHHHhHHHhhccCCceEEeeccHHhhhhhhhHhhcCcceeEEEEecc
Confidence 344444444445554 68899999887555555556889999998886666655555667777777765
No 207
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=43.27 E-value=3.5e+02 Score=27.32 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=23.7
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
.++| +|+++ ...+ ..+..++..|+++|.||.|+..
T Consensus 255 ~~~d-~vld~-vg~~-~~~~~~~~~l~~~G~~v~~g~~ 289 (367)
T cd08263 255 RGVD-VVVEA-LGKP-ETFKLALDVVRDGGRAVVVGLA 289 (367)
T ss_pred CCCC-EEEEe-CCCH-HHHHHHHHHHhcCCEEEEEccC
Confidence 4688 44454 1222 3778888999999999988643
No 208
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=43.26 E-value=3.1e+02 Score=27.66 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=23.5
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeC
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQ 387 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp 387 (452)
+++| +++++- -....+...+..|+++|.|+.++.
T Consensus 250 ~~vd-~vld~~--~~~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 250 RGAD-YAFEAV--GRAATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred CCCC-EEEEcC--CChHHHHHHHHHhhcCCeEEEEec
Confidence 4677 555542 224677888888888888888864
No 209
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=43.23 E-value=45 Score=33.75 Aligned_cols=36 Identities=19% Similarity=0.021 Sum_probs=27.7
Q ss_pred cCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 203 GNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 203 anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
+++.+|.+|||++.+. |++++.+|..+|. +|+.+..
T Consensus 168 ~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~--~vi~~~~ 204 (355)
T cd08230 168 LPTWNPRRALVLGAGPIGLLAALLLRLRGF--EVYVLNR 204 (355)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEec
Confidence 4578999999998633 8888889999876 5666654
No 210
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=43.01 E-value=1.2e+02 Score=24.19 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=36.8
Q ss_pred HHHHHHhhhcCcceEEEeC--CCCChHHHHHhHHhcccCCCcEEEEeCChH
Q 012978 342 QETLKLWKENGFSSMIVVA--PELDPWSFVKDLLPLLSYSAPFAIYHQYLQ 390 (452)
Q Consensus 342 ~~~~~~~~~~~~D~liia~--~~~dP~~il~~ll~~L~pS~p~VVYsp~~e 390 (452)
.++++.+....+|.+|++. +..+..++++.+...- ++.|+++++....
T Consensus 33 ~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQIN-PSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHT-TTSEEEEEESSTS
T ss_pred HHHHHHhcccCceEEEEEeeecccccccccccccccc-ccccEEEecCCCC
Confidence 4556777788899999994 4456777788875544 9999999997765
No 211
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=42.46 E-value=3.6e+02 Score=26.86 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=22.8
Q ss_pred cCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEee
Q 012978 203 GNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 203 anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~ 239 (452)
+...+|++||+.+.+. |.+++.+|.++|.. .|+...
T Consensus 171 ~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~-~v~~~~ 207 (350)
T cd08240 171 MPLVADEPVVIIGAGGLGLMALALLKALGPA-NIIVVD 207 (350)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCC-eEEEEe
Confidence 4445899999995422 66667777777642 454443
No 212
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=41.48 E-value=2.7e+02 Score=25.90 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=26.9
Q ss_pred cCcceEEEeC---CCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 351 NGFSSMIVVA---PELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 351 ~~~D~liia~---~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
+.||.++... -..+|..++..+...|+++|.+++..+.
T Consensus 111 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 4688555421 1237888999999999999988776543
No 213
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=41.43 E-value=2.2e+02 Score=28.27 Aligned_cols=36 Identities=6% Similarity=0.027 Sum_probs=24.9
Q ss_pred hcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 350 ENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
.+++| +++++ . -....+..++..|+++|.|+.++.+
T Consensus 228 ~~~~d-~vld~-~-g~~~~~~~~~~~l~~~g~~v~~g~~ 263 (340)
T TIGR00692 228 GEGVD-VFLEM-S-GAPKALEQGLQAVTPGGRVSLLGLP 263 (340)
T ss_pred CCCCC-EEEEC-C-CCHHHHHHHHHhhcCCCEEEEEccC
Confidence 35688 44544 1 1235678889999999999988765
No 214
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=41.27 E-value=85 Score=30.46 Aligned_cols=56 Identities=5% Similarity=-0.063 Sum_probs=43.3
Q ss_pred HHHhhhcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeC----ChHHHHHHHHHHHhcc
Q 012978 345 LKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQ----YLQPLATCMHSLQVRK 403 (452)
Q Consensus 345 ~~~~~~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp----~~epL~e~~~~L~~~~ 403 (452)
.+++...+.|.+++++| +....+.....|+-|..++|-+| ..+...++....++.+
T Consensus 30 ~~eLl~~~vDaVviatp---~~~H~e~a~~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~~~g 89 (229)
T TIGR03855 30 FDEFLPEDVDIVVEAAS---QEAVKEYAEKILKNGKDLLIMSVGALADRELRERLREVARSSG 89 (229)
T ss_pred HHHHhcCCCCEEEECCC---hHHHHHHHHHHHHCCCCEEEECCcccCCHHHHHHHHHHHHhcC
Confidence 34444467999999985 66778889999999999999999 6666677777776654
No 215
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=41.22 E-value=2e+02 Score=30.58 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=35.6
Q ss_pred chhHHHHHHHhcCC-CCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 192 RVDMLSLLLSMGNV-AANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 192 R~DtLa~iL~~anI-~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.-++.-|+...|+ -+|.+|+|++-+. |+.++.++..+|. +|+.+..
T Consensus 185 g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~ 233 (413)
T cd00401 185 RESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEV 233 (413)
T ss_pred chhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEEC
Confidence 44456667777777 6899999999865 9999999999887 4555543
No 216
>PHA03412 putative methyltransferase; Provisional
Probab=40.21 E-value=57 Score=32.07 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=27.8
Q ss_pred CCeEEEEeCCCcHHHHHHHHHhC--CCceEEEeec
Q 012978 208 NSDVLVVDMAGGLLTGAVAERLG--GTGYVCNTCI 240 (452)
Q Consensus 208 g~rvLv~d~~~GlltaAv~ermg--g~G~v~~~~~ 240 (452)
+++||..++++|.++.+++++|. +...|+.++.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEI 84 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVEL 84 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEEC
Confidence 78999999999999999999874 3457777765
No 217
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=39.73 E-value=30 Score=30.57 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhc
Q 012978 116 GEDIDEMRRQGATGEEIVEALIAN 139 (452)
Q Consensus 116 ~eeI~~lK~~g~sG~eII~~Lven 139 (452)
-+.|.+|+.+|.+.+||++++---
T Consensus 94 i~~I~el~~eG~s~eei~~ki~~e 117 (131)
T PF08004_consen 94 IERIKELKSEGKSEEEIAEKISRE 117 (131)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 377999999999999999998653
No 218
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=39.46 E-value=1.5e+02 Score=29.29 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=23.4
Q ss_pred HhcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCCceEEEe
Q 012978 201 SMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~--GlltaAv~ermgg~G~v~~~ 238 (452)
..+++.+|.+||+.+ ++ |..+..+|..+|. +.|+.+
T Consensus 161 ~~~~~~~~~~VlI~g-~g~vg~~~iqlak~~g~-~~v~~~ 198 (347)
T cd05278 161 ELAGIKPGSTVAVIG-AGPVGLCAVAGARLLGA-ARIIAV 198 (347)
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCC-CEEEEE
Confidence 467889999999954 33 4445556676653 356666
No 219
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=39.33 E-value=45 Score=26.56 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=31.4
Q ss_pred hHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCcccee
Q 012978 365 PWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQ 409 (452)
Q Consensus 365 P~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~ 409 (452)
|+.-+...+..+.+..|+|+||..-.....+...|+.. ++-++.
T Consensus 42 p~~~~~~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~-G~~~v~ 85 (96)
T cd01444 42 DEDSLDDWLGDLDRDRPVVVYCYHGNSSAQLAQALREA-GFTDVR 85 (96)
T ss_pred CHHHHHHHHhhcCCCCCEEEEeCCCChHHHHHHHHHHc-CCceEE
Confidence 44455566667788899999999776777788888764 354443
No 220
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=39.11 E-value=60 Score=28.68 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=30.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCC--CcH---HHHHHHHHhCCCceEEE
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMA--GGL---LTGAVAERLGGTGYVCN 237 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~--~Gl---ltaAv~ermgg~G~v~~ 237 (452)
+.|..++...+|.++..|++++.. +|. .++.+++.+|- -.|..
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~-~~v~i 128 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGH-PDVAI 128 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCC-CCeEE
Confidence 578999999999999999999864 454 34446666653 34433
No 221
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=39.01 E-value=66 Score=32.57 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=42.5
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHH
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQ 400 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~ 400 (452)
..+|-+||+++.++-.++++.+.|++++...+++..+-+..+.++-..+.
T Consensus 66 ~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~ 115 (307)
T COG1893 66 GPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILP 115 (307)
T ss_pred CCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCC
Confidence 47899999999999999999999999999999999888877664444443
No 222
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=38.65 E-value=1.1e+02 Score=25.39 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=44.0
Q ss_pred HHhhhcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeC---ChHHHHHHHHHHHhccCccc
Q 012978 346 KLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQ---YLQPLATCMHSLQVRKMAIG 407 (452)
Q Consensus 346 ~~~~~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp---~~epL~e~~~~L~~~~~~v~ 407 (452)
+.+...++|.++|++| +..-.+.+...|.-+-++++=-| ..+.+.++....++.+..+.
T Consensus 56 ~ll~~~~~D~V~I~tp---~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 56 ELLADEDVDAVIIATP---PSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp HHHHHTTESEEEEESS---GGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHhhcCCEEEEecC---CcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 3444568999999986 66778888888988888887644 57777888887777665443
No 223
>COG0684 MenG Demethylmenaquinone methyltransferase [Coenzyme metabolism]
Probab=38.46 E-value=66 Score=30.95 Aligned_cols=52 Identities=29% Similarity=0.443 Sum_probs=37.4
Q ss_pred HhcCCCCCCeEEEEeCCC-------cHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCH
Q 012978 201 SMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~-------GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~ 257 (452)
.+.-..+|. |||+|..+ |=+++..|..-|-.|.|+.--.+|. +.+..||||-
T Consensus 64 al~~~~~Gd-VLVid~~g~~~~A~~Gd~la~~a~~~G~~GvVidG~vRDv----~~l~el~~pv 122 (210)
T COG0684 64 ALEQAGPGD-VLVIDGGGDLRRALWGDLLATLAKVRGWAGVVIDGAVRDV----DELRELDFPV 122 (210)
T ss_pred eeecCCCCC-EEEEeCCCCcceeehHHHHHHHHHHcCccEEEEeceeech----HHHhhcCCCe
Confidence 444445666 99998743 6677777788899999998776654 5677888774
No 224
>PF03737 Methyltransf_6: Demethylmenaquinone methyltransferase; InterPro: IPR005493 This entry represents a structural motif found in demethylmenaquinone methyltransferases and in the regulator of ribonuclease E activity A (RraA). These proteins contain a swivelling 3-layer beta/beta/alpha domain that appears to be mobile in most multi-domain proteins known to contain it. These proteins are structurally similar, and may have distant homology, to the phosphohistidine domain of pyruvate phosphate dikinase. The RraA fold is an ancient platform that has been adapted for a wide range of functions. RraA had been identified as a putative demethylmenaquinone methyltransferase and was annotated as MenG, but further analysis showed that RraA lacked the structural motifs usually required for methylases. The Escherichia coli protein regulator RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing []. RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage. Demethylmenaquinone methyltransferases convert dimethylmenaquinone (DMK) to menaquinone (MK) in the final step of menaquinone biosynthesis. This region is also found at the C terminus of the DlpA protein Q48806 from SWISSPROT.; PDB: 3C8O_A 2PCN_A 3K4I_B 2YJV_A 1Q5X_B 2C5Q_D 2YJT_B 1NXJ_B 3NOJ_A 1J3L_A ....
Probab=38.06 E-value=75 Score=28.75 Aligned_cols=58 Identities=31% Similarity=0.463 Sum_probs=38.7
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCC-------cHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCC
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFS 256 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~-------GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~ 256 (452)
|.....-.+..+++| .|||+|..+ |=+.+..+.+.|-.|.|+.-..+| ++.++.|+||
T Consensus 45 ~~~~~~~~i~~~~~G-~VlVid~~~~~~~a~~G~~~a~~a~~~G~~G~VidG~vRD----~~~i~~~~~P 109 (154)
T PF03737_consen 45 DNLLVREAIDAAPPG-DVLVIDGGGDTDCAVWGELMATAAKARGVAGVVIDGAVRD----VDEIRELGFP 109 (154)
T ss_dssp BSHHHHHHHTSS-TT-EEEEEEETTGSSSEEE-HHHHHHHHHTTBSEEEEEEEES-----HHHHTTSSSE
T ss_pred CCHHHHHHHhcCCCC-eEEEEECCCCcceeeECHHHHHHHHHCCCeEEECCCcccC----HHHHhhcCCC
Confidence 445555555566665 588887632 667777789999999999988775 3456666666
No 225
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=37.85 E-value=4e+02 Score=26.08 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=26.9
Q ss_pred hcCCCCCCeEEEEeCC--CcHHHHHHHHHhCCCceEEEee
Q 012978 202 MGNVAANSDVLVVDMA--GGLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 202 ~anI~~g~rvLv~d~~--~GlltaAv~ermgg~G~v~~~~ 239 (452)
.+.+++|.+|++.+.+ -|..+..++.++|- .++.+.
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~--~v~~~~ 172 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTV 172 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC--EEEEEe
Confidence 4678999999998643 47777888898876 355554
No 226
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=37.85 E-value=4.1e+02 Score=26.18 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=25.8
Q ss_pred cCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEeec
Q 012978 203 GNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 203 anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.+.+|.+|||.+.+ -|.+++.+|.++|+ ..|+....
T Consensus 163 ~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~ 200 (340)
T cd05284 163 PYLDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDR 200 (340)
T ss_pred ccCCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeC
Confidence 467889999999842 26666777888875 46665543
No 227
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=37.51 E-value=3.4e+02 Score=25.19 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=38.5
Q ss_pred eCCChHHHHHHHHhcCcccccccchhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 169 RRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 169 ~~pt~~~l~e~y~~Kdp~Ki~~lR~DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
.+||...+-+.+|.. |+. .-.|.+||-+-.++|.+.-.++.| |. ..|+.++.
T Consensus 29 ~rpt~~~vrea~f~~------------l~~------~~~g~~vLDLfaGsG~lglea~sr-ga-~~v~~vE~ 80 (189)
T TIGR00095 29 TRPTTRVVRELFFNI------------LRP------EIQGAHLLDVFAGSGLLGEEALSR-GA-KVAFLEED 80 (189)
T ss_pred CCCchHHHHHHHHHH------------HHH------hcCCCEEEEecCCCcHHHHHHHhC-CC-CEEEEEeC
Confidence 678888888877763 222 235899999999999999999888 33 36777765
No 228
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=37.48 E-value=38 Score=27.82 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=25.2
Q ss_pred HHHHhhhcCcceEEEeCCCCChH---HHHHhHHhcccCCCcEEE
Q 012978 344 TLKLWKENGFSSMIVVAPELDPW---SFVKDLLPLLSYSAPFAI 384 (452)
Q Consensus 344 ~~~~~~~~~~D~liia~~~~dP~---~il~~ll~~L~pS~p~VV 384 (452)
.+..+..+.+|-++|+.. |... .-+..++|.|+|++.+|+
T Consensus 61 ~l~~~~~~~~dli~iDg~-H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 61 FLPSLPDGPIDLIFIDGD-HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp HHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHcCCCCEEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 344444578999999984 4443 346779999999876554
No 229
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=37.05 E-value=3.5e+02 Score=26.52 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=25.2
Q ss_pred HhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEee
Q 012978 201 SMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~~ 239 (452)
..+.+++|.++||.+.+ -|..+..++...|- .|+...
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~--~v~~~~ 198 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGA--EVFAFT 198 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC--eEEEEc
Confidence 67889999999998642 25555667777653 555553
No 230
>PLN00416 carbonate dehydratase
Probab=37.00 E-value=78 Score=31.44 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=60.3
Q ss_pred HHHHcCCChHHHHHHHHhccccccccccccHHHHHHHhhhccCCcEEEeCC-ChHHHHHHHHhcCcccccccch------
Q 012978 121 EMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP-FARSICEAYFKKNPARIGFLRV------ 193 (452)
Q Consensus 121 ~lK~~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~~~i~~p-t~~~l~e~y~~Kdp~Ki~~lR~------ 193 (452)
.|+..-.+.++.+++|+++...|.....=.+..|.++-.+.--..+.++-+ ..|...+.+|...|.=+.-+|-
T Consensus 37 ~~~~~~~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~ 116 (258)
T PLN00416 37 ELKELDSSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVP 116 (258)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccC
Confidence 445555679999999999999998765222223333322333344555555 6677778888888854333332
Q ss_pred --------h---HHHHHHHhcCCCCCCeEEEEeCCC-cHHHHHH
Q 012978 194 --------D---MLSLLLSMGNVAANSDVLVVDMAG-GLLTGAV 225 (452)
Q Consensus 194 --------D---tLa~iL~~anI~~g~rvLv~d~~~-GlltaAv 225 (452)
+ +|-+=+...+| ..++|+++++ |.+.|++
T Consensus 117 ~~d~~~~~~~~asLEyAv~~L~V---~~IVV~GHs~CGaV~Aa~ 157 (258)
T PLN00416 117 PFDQKRHSGVGAAVEYAVVHLKV---ENILVIGHSCCGGIKGLM 157 (258)
T ss_pred CccccccccchhHHHHHHHHhCC---CEEEEecCCCchHHHHHH
Confidence 1 23333444444 4778888854 5566665
No 231
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=36.79 E-value=3.1e+02 Score=27.29 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=22.8
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
+++| +++++- -....+..++..|+++|.|+.++..
T Consensus 230 ~~vd-~vld~~--g~~~~~~~~~~~l~~~G~~v~~g~~ 264 (341)
T cd05281 230 TGVD-VVLEMS--GNPKAIEQGLKALTPGGRVSILGLP 264 (341)
T ss_pred CCCC-EEEECC--CCHHHHHHHHHHhccCCEEEEEccC
Confidence 4677 555541 1235667778888888888888654
No 232
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=36.79 E-value=29 Score=30.43 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=40.0
Q ss_pred chHHHHHHhhh--cCcceEEEeC--CCCCh----HHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhcc
Q 012978 340 ASQETLKLWKE--NGFSSMIVVA--PELDP----WSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRK 403 (452)
Q Consensus 340 ~~~~~~~~~~~--~~~D~liia~--~~~dP----~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~ 403 (452)
...++.+.+.+ ..||+++.+. |.-+| .+++..+..++++++.++.||-.. .+...|...|
T Consensus 36 ~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~----~Vr~~L~~aG 103 (124)
T PF05430_consen 36 WFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAG----AVRRALQQAG 103 (124)
T ss_dssp EES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BH----HHHHHHHHCT
T ss_pred EEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechH----HHHHHHHHcC
Confidence 34555555543 6899999994 55566 688999999999999999999863 3555666543
No 233
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=36.76 E-value=46 Score=32.59 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=34.0
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHh
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQV 401 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~ 401 (452)
.++|-+||++|-..-..++..+.|++++++.++=-+..+.++.+.+..+..
T Consensus 44 ~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 44 EDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLP 94 (258)
T ss_dssp GCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC
Confidence 477989998853222455777788899999999889999998888777654
No 234
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=36.51 E-value=1.1e+02 Score=25.01 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=42.6
Q ss_pred hHHHHHHhhhcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHH
Q 012978 341 SQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCM 396 (452)
Q Consensus 341 ~~~~~~~~~~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~ 396 (452)
..++++.+..+..-.++||. .-||+ ++.++..+..--+-=++|.|..+.|=+++
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~-Da~~~-vv~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAE-DVEVY-LMTRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHHhcCCceEEEEeC-CCCHH-HHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 45677788888889899987 67888 77788777777777789999998875544
No 235
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=36.51 E-value=4.1e+02 Score=25.77 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=28.2
Q ss_pred HHhcCCCCCCeEEEEeC--CCcHHHHHHHHHhCCCceEEEee
Q 012978 200 LSMGNVAANSDVLVVDM--AGGLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~--~~GlltaAv~ermgg~G~v~~~~ 239 (452)
+..+++++|.+|||.+. .-|.++..+|..+|- .|+...
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~--~v~~~~ 174 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA--TVVGAA 174 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEe
Confidence 45678899999999985 347777888888875 455553
No 236
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=35.33 E-value=2.9e+02 Score=27.50 Aligned_cols=33 Identities=24% Similarity=0.154 Sum_probs=25.1
Q ss_pred CCCCCCeEEEEeCC--CcHHHHHHHHHhCCCceEEEe
Q 012978 204 NVAANSDVLVVDMA--GGLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 204 nI~~g~rvLv~d~~--~GlltaAv~ermgg~G~v~~~ 238 (452)
++.+|.++||.+.+ -|+.+..++..+|- .|+..
T Consensus 151 ~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~--~v~~~ 185 (339)
T cd08249 151 PASKGKPVLIWGGSSSVGTLAIQLAKLAGY--KVITT 185 (339)
T ss_pred CCCCCCEEEEEcChhHHHHHHHHHHHHcCC--eEEEE
Confidence 45799999999864 47778888888876 45544
No 237
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=34.00 E-value=77 Score=28.91 Aligned_cols=63 Identities=21% Similarity=0.363 Sum_probs=44.0
Q ss_pred cccCccccccCccc--ccCCHHHHHHHHHcCCChHHHHHHHHhccccccccccccHHHHHHHhhhccCCcEEEeCC-ChH
Q 012978 98 EFRDNRAIVDDNKA--QCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP-FAR 174 (452)
Q Consensus 98 ~~~dNr~i~Dd~~~--QkLs~eeI~~lK~~g~sG~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKy~~~~~i~~p-t~~ 174 (452)
..+-|++|.|.|+- --| .-++-+|-++|.|-++||..+++ +|-.+|+.-+| +..
T Consensus 48 p~CQNqsIadSnA~IA~Dl-R~~V~e~l~eGkS~~qIid~mVa----------------------RYG~FVly~Pp~~~~ 104 (153)
T COG3088 48 PQCQNQSIADSNAPIARDL-RHQVYELLQEGKSDQQIIDYMVA----------------------RYGEFVLYKPPLTGQ 104 (153)
T ss_pred CcCCCCChhhhccHHHHHH-HHHHHHHHHcCCcHHHHHHHHHH----------------------hhcceeeecCCCchh
Confidence 34578888886652 222 33466888899999999999999 47777777666 666
Q ss_pred HHHHHHHhc
Q 012978 175 SICEAYFKK 183 (452)
Q Consensus 175 ~l~e~y~~K 183 (452)
++.=+.+|-
T Consensus 105 T~lLW~~Pv 113 (153)
T COG3088 105 TLLLWGLPV 113 (153)
T ss_pred HHHHHHhHH
Confidence 666555543
No 238
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=33.89 E-value=40 Score=30.37 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=29.7
Q ss_pred hcCcceEEEeCCC---CChHHHHHhHHhcccCCCcEEEEeC
Q 012978 350 ENGFSSMIVVAPE---LDPWSFVKDLLPLLSYSAPFAIYHQ 387 (452)
Q Consensus 350 ~~~~D~liia~~~---~dP~~il~~ll~~L~pS~p~VVYsp 387 (452)
.+.||.+++..-- .||..++..+...|+|+|.|+|..-
T Consensus 42 ~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 42 DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred CCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 4569988776411 3789999999999999999987643
No 239
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=33.62 E-value=83 Score=31.72 Aligned_cols=60 Identities=8% Similarity=-0.022 Sum_probs=44.3
Q ss_pred CChHHHHHhHHhc--ccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeeeeeeeecCC
Q 012978 363 LDPWSFVKDLLPL--LSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPS 423 (452)
Q Consensus 363 ~dP~~il~~ll~~--L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~lR~yQVLP~ 423 (452)
+.+...+..+... |.++.++|+||-.=.--.-++-.|+.-+..-+ ++.+=-..+|--.|+
T Consensus 216 ~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~-~lYdGSWsEWg~~~~ 277 (285)
T COG2897 216 FKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNN-RLYDGSWSEWGSDPD 277 (285)
T ss_pred cCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCc-ccccChHHHhhcCCC
Confidence 4566777777755 88999999999998777777777776654444 777777777766665
No 240
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=33.60 E-value=26 Score=24.73 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=14.0
Q ss_pred cCCHHH---HHHHHHcCCChHHHHHHHHhcc
Q 012978 113 CLSGED---IDEMRRQGATGEEIVEALIANS 140 (452)
Q Consensus 113 kLs~ee---I~~lK~~g~sG~eII~~LvenS 140 (452)
.||.+| |+.|.++|.|-.+|-+.|=-+.
T Consensus 4 ~Lt~~eR~~I~~l~~~G~s~~~IA~~lg~s~ 34 (44)
T PF13936_consen 4 HLTPEERNQIEALLEQGMSIREIAKRLGRSR 34 (44)
T ss_dssp --------HHHHHHCS---HHHHHHHTT--H
T ss_pred chhhhHHHHHHHHHHcCCCHHHHHHHHCcCc
Confidence 455555 8899999999999887764443
No 241
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=33.33 E-value=98 Score=31.30 Aligned_cols=34 Identities=35% Similarity=0.377 Sum_probs=26.8
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 205 I~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.+|.+||-+++++|+|+-|.+- +|. ++|+.+..
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~k-lGA-~~v~a~Di 192 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAK-LGA-KKVVAIDI 192 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHH-TTB-SEEEEEES
T ss_pred ccCCCEEEEeCCcHHHHHHHHHH-cCC-CeEEEecC
Confidence 67899999999999999877654 655 58888875
No 242
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=33.06 E-value=4.8e+02 Score=25.62 Aligned_cols=34 Identities=9% Similarity=0.018 Sum_probs=24.4
Q ss_pred CcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 352 GFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 352 ~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
++|.+|+++. .+ ..+...+..|+++|.||.++..
T Consensus 230 ~~d~vi~~~~--~~-~~~~~~~~~l~~~G~~v~~g~~ 263 (338)
T PRK09422 230 GAHAAVVTAV--AK-AAFNQAVDAVRAGGRVVAVGLP 263 (338)
T ss_pred CCcEEEEeCC--CH-HHHHHHHHhccCCCEEEEEeeC
Confidence 5776677653 33 4678888899998888887643
No 243
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=32.62 E-value=5e+02 Score=25.68 Aligned_cols=35 Identities=11% Similarity=-0.079 Sum_probs=23.6
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY 388 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~ 388 (452)
.++| +++++- -. -..+..++..|+++|.||.|...
T Consensus 234 ~~~d-~vld~~-g~-~~~~~~~~~~l~~~g~~v~~g~~ 268 (345)
T cd08286 234 RGVD-VVIEAV-GI-PATFELCQELVAPGGHIANVGVH 268 (345)
T ss_pred CCCC-EEEECC-CC-HHHHHHHHHhccCCcEEEEeccc
Confidence 4678 555552 22 23578888899999999888643
No 244
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=32.00 E-value=58 Score=34.91 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=38.3
Q ss_pred EeCC---ChHHHHHHHHhcCcccccccchhHHHHHHHhcCCCC-------CCeEEEEeCCCcHHHHHHH---HHhCCCce
Q 012978 168 LRRP---FARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAA-------NSDVLVVDMAGGLLTGAVA---ERLGGTGY 234 (452)
Q Consensus 168 i~~p---t~~~l~e~y~~Kdp~Ki~~lR~DtLa~iL~~anI~~-------g~rvLv~d~~~GlltaAv~---ermgg~G~ 234 (452)
+++| ++.+..---|.|||.|-.--+ +++.. ++.+... +..||++|.|.|.|+.+.+ .+.|+.-+
T Consensus 140 PLqPl~dnL~s~tYe~fE~D~vKY~~Ye-~AI~~--al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~ 216 (448)
T PF05185_consen 140 PLQPLMDNLESQTYEVFEKDPVKYDQYE-RAIEE--ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK 216 (448)
T ss_dssp ---TTTS---HHHHHHHCC-HHHHHHHH-HHHHH--HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE
T ss_pred CCCCchhhhccccHhhHhcCHHHHHHHH-HHHHH--HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE
Confidence 5666 444444455689987632221 12222 2223222 4569999999999976554 44577779
Q ss_pred EEEeecCC
Q 012978 235 VCNTCIGD 242 (452)
Q Consensus 235 v~~~~~~~ 242 (452)
||.++.+.
T Consensus 217 VyAVEkn~ 224 (448)
T PF05185_consen 217 VYAVEKNP 224 (448)
T ss_dssp EEEEESST
T ss_pred EEEEcCCH
Confidence 99998753
No 245
>PRK13699 putative methylase; Provisional
Probab=31.98 E-value=1.1e+02 Score=29.58 Aligned_cols=49 Identities=8% Similarity=0.090 Sum_probs=30.3
Q ss_pred HHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeeeeee
Q 012978 367 SFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREY 418 (452)
Q Consensus 367 ~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~lR~y 418 (452)
.++..+...|+|++.+++|+.+.. +..++..++.. +|...+.. +|.+..
T Consensus 53 ~~l~E~~RVLKpgg~l~if~~~~~-~~~~~~al~~~-GF~l~~~I-iW~K~~ 101 (227)
T PRK13699 53 PACNEMYRVLKKDALMVSFYGWNR-VDRFMAAWKNA-GFSVVGHL-VFTKNY 101 (227)
T ss_pred HHHHHHHHHcCCCCEEEEEecccc-HHHHHHHHHHC-CCEEeeEE-EEECCC
Confidence 456778889999999999887642 34445556544 35433222 455543
No 246
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=31.86 E-value=87 Score=27.17 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=51.9
Q ss_pred HHHHHHhhhcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCc
Q 012978 342 QETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMA 405 (452)
Q Consensus 342 ~~~~~~~~~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~ 405 (452)
.+.++.+.+.+++.+|+-+..+--.++.+....+++.-+.=|+--|+.|. .+.|+.|+..+.+
T Consensus 51 ~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EA-ikr~nel~~~krV 113 (121)
T COG1504 51 LEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEA-IKRYNELRGKKRV 113 (121)
T ss_pred HHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHH-HHHHHHHhccceE
Confidence 45566677789999999998877788899999999998888899999987 6788999865444
No 247
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=31.11 E-value=48 Score=29.34 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=32.3
Q ss_pred cccCccccccCccc--ccCCHHHHHHHHHcCCChHHHHHHHHhc
Q 012978 98 EFRDNRAIVDDNKA--QCLSGEDIDEMRRQGATGEEIVEALIAN 139 (452)
Q Consensus 98 ~~~dNr~i~Dd~~~--QkLs~eeI~~lK~~g~sG~eII~~Lven 139 (452)
..+-|++|.|.|+. +.| ..+|.+|-.+|.|-+||++-+++.
T Consensus 44 ~vCqnqsiadSna~iA~dm-R~~Vr~~i~~G~sd~eI~~~~v~R 86 (126)
T PRK10144 44 PQCQNQNLLESNAPVAVSM-RHQVYSMVAEGKSEVEIIGWMTER 86 (126)
T ss_pred CCCCCCChhhcCCHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34589999998773 333 456888999999999999999983
No 248
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=31.09 E-value=5e+02 Score=27.15 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=34.0
Q ss_pred hcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHH
Q 012978 350 ENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLAT 394 (452)
Q Consensus 350 ~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e 394 (452)
...||.++++-+ --|.+.+...+..++++|-+.|-+.-...|..
T Consensus 123 ~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvSAtD~~~L~g 166 (382)
T PRK04338 123 ERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVTATDTAPLCG 166 (382)
T ss_pred cCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEEecCchhhcC
Confidence 356998888743 45788999989999999988888777777643
No 249
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=31.02 E-value=2.3e+02 Score=22.80 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=24.2
Q ss_pred hHHhcccCCCcEEEEeCChHHHHHHHHHHHhc
Q 012978 371 DLLPLLSYSAPFAIYHQYLQPLATCMHSLQVR 402 (452)
Q Consensus 371 ~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~ 402 (452)
...+.+.+..++|+||..=..-..+...|+..
T Consensus 53 ~~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~ 84 (100)
T cd01523 53 DILDQLPDDQEVTVICAKEGSSQFVAELLAER 84 (100)
T ss_pred HHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHc
Confidence 34566778899999999866667777788754
No 250
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=30.94 E-value=56 Score=32.91 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+-.++-.+++.||.++|.++.+-|.++-.+|++-| .+|+.+..
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTl 103 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTL 103 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeC
Confidence 57899999999999999999999999888889874 47777754
No 251
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=30.82 E-value=26 Score=34.95 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=42.9
Q ss_pred cCcceEEEeC-CC--CChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeeeeeeeecCCCCCC
Q 012978 351 NGFSSMIVVA-PE--LDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQVLPSRTHP 427 (452)
Q Consensus 351 ~~~D~liia~-~~--~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~lR~yQVLP~RTHP 427 (452)
+.||+++.-- -+ -||.+++..+...|+|+|+++|=-=..-.|. -|..+.+.|.-+| +.|-.||-
T Consensus 157 ~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS----------~~~~i~~~E~vl~---ivp~Gth~ 223 (282)
T KOG1270|consen 157 GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILS----------FAGTIFLAEIVLR---IVPKGTHT 223 (282)
T ss_pred cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHH----------hhccccHHHHHHH---hcCCCCcC
Confidence 3599766421 00 2799999999999999999876433222111 2566777788787 77777773
No 252
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=30.71 E-value=69 Score=32.37 Aligned_cols=38 Identities=8% Similarity=-0.072 Sum_probs=26.5
Q ss_pred cCCCCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeec
Q 012978 203 GNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 203 anI~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.+++|.+|||.+.+. |++++.++.++.|..+|+.+..
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~ 197 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGK 197 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 4578999999999632 6777777887533346766654
No 253
>COG4628 Uncharacterized conserved protein [Function unknown]
Probab=30.15 E-value=44 Score=28.98 Aligned_cols=66 Identities=26% Similarity=0.421 Sum_probs=43.6
Q ss_pred HHHHHHc---CCChHHHHHHHHh-----------------------ccccccccccccHHH----HHHH--hhhcc-CCc
Q 012978 119 IDEMRRQ---GATGEEIVEALIA-----------------------NSATFEKKTSFSQEK----YKLK--KQKKY-APK 165 (452)
Q Consensus 119 I~~lK~~---g~sG~eII~~Lve-----------------------nS~tF~~KT~FSqeK----Ylkk--K~kKy-~~~ 165 (452)
|+.++.. |.+-+.|+.+|++ +|-.|=.||..+.+| |+.+ |.++- ..-
T Consensus 7 ~e~~~~nPLHGltLE~llt~Lvd~YGWd~L~~ri~inCF~ndPSi~SSlKfLrkT~WARekvEa~Yl~~~~r~~r~~~~~ 86 (136)
T COG4628 7 IELQKNNPLHGLTLETLLTELVDFYGWDGLATRIRINCFHNDPSIKSSLKFLRKTPWAREKVEALYLYRFKRMPRASSEE 86 (136)
T ss_pred HHHhccCCcccccHHHHHHHHHHHhChHHHHhhceeccccCCccHHHHHHHHhcCHhHHHHHHHHHHHHHHhhhhhcccc
Confidence 4444444 5566777777765 466788899999988 5544 22221 223
Q ss_pred EEEeCCChHHHHHHHHhcCc
Q 012978 166 VLLRRPFARSICEAYFKKNP 185 (452)
Q Consensus 166 ~~i~~pt~~~l~e~y~~Kdp 185 (452)
|| +.|-+|.+-+-+|+|.|
T Consensus 87 ft-l~~~~r~~~~~l~~~~~ 105 (136)
T COG4628 87 FT-LPPRARTFPHGLHPKEP 105 (136)
T ss_pred cc-cChhhhcCccccCcCcc
Confidence 55 67788888888888887
No 254
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=29.73 E-value=80 Score=30.79 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=38.9
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHH
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSL 399 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L 399 (452)
..+|-+||++|.++=.++++.+.|+|.+..++|....-......+...+
T Consensus 58 ~~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~ 106 (293)
T TIGR00745 58 PPADLVIITVKAYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELL 106 (293)
T ss_pred CCCCEEEEeccchhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHh
Confidence 4789999999888888889999999999888888777766654444444
No 255
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.73 E-value=5.1e+02 Score=24.85 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=32.8
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCC
Q 012978 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (452)
Q Consensus 205 I~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~ 242 (452)
+++|.+|+-.+..=|--+=-++.++|..|.|+.+....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 47789999999988888888899999999999997643
No 256
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.56 E-value=85 Score=32.33 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeecCC
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~~~ 242 (452)
+|-.+.-|+|.||+.|.||+-++=-|+.++--|.-|-++|+.+..+.
T Consensus 181 ~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~ 227 (375)
T KOG0022|consen 181 YGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINP 227 (375)
T ss_pred chhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCH
Confidence 57889999999999999999876445566666777888999998753
No 257
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=29.50 E-value=3.5e+02 Score=26.13 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=31.7
Q ss_pred cceEEEeCCCCChHHH-HHhHHhcccCCCcEE--EEeCChHHHHHHHHHHHh
Q 012978 353 FSSMIVVAPELDPWSF-VKDLLPLLSYSAPFA--IYHQYLQPLATCMHSLQV 401 (452)
Q Consensus 353 ~D~liia~~~~dP~~i-l~~ll~~L~pS~p~V--VYsp~~epL~e~~~~L~~ 401 (452)
||.+.. +..-+.+. ++-+.|+|+++|-|+ -+....+.+.+.-.+...
T Consensus 136 ~D~vts--RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~ 185 (215)
T COG0357 136 YDVVTS--RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILP 185 (215)
T ss_pred CcEEEe--ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHh
Confidence 885544 34445554 667899999989887 445666777766666654
No 258
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=29.46 E-value=90 Score=31.31 Aligned_cols=49 Identities=8% Similarity=-0.103 Sum_probs=37.9
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHH
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSL 399 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L 399 (452)
..+|-+||++|.++-.+++..+.|++++..+++...+-......+...+
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~ 119 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREIL 119 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHC
Confidence 4789999999878778899999999999988887766655444444444
No 259
>PRK05785 hypothetical protein; Provisional
Probab=29.39 E-value=5e+02 Score=24.70 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=31.2
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+..+..+. .++++||.++.+.|.++..++++. .+.|+.++.
T Consensus 40 ~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~ 82 (226)
T PRK05785 40 ELVKTILKYC--GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDY 82 (226)
T ss_pred HHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECC
Confidence 3445554443 348899999999999999998876 357777754
No 260
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=29.10 E-value=52 Score=29.10 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=32.0
Q ss_pred cccCccccccCccc--ccCCHHHHHHHHHcCCChHHHHHHHHhc
Q 012978 98 EFRDNRAIVDDNKA--QCLSGEDIDEMRRQGATGEEIVEALIAN 139 (452)
Q Consensus 98 ~~~dNr~i~Dd~~~--QkLs~eeI~~lK~~g~sG~eII~~Lven 139 (452)
..+-|++|.|.|+. +.| ..+|.+|-++|.|-+||++-+++.
T Consensus 44 ~vCqnqsiadS~a~iA~dm-R~~Vr~~i~~G~Sd~eI~~~~v~R 86 (126)
T TIGR03147 44 PQCQNQNLVESNSPIAYDL-RHEVYSMVNEGKSNQQIIDFMTAR 86 (126)
T ss_pred CCCCCCChhhcCCHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34578999988773 333 456889999999999999999983
No 261
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=28.74 E-value=5.9e+02 Score=25.30 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=24.7
Q ss_pred HhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEe
Q 012978 201 SMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~ 238 (452)
..+++.+|.+||+.+.+ -|..+..+|..+|.. .++..
T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~-~v~~~ 205 (350)
T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPK-KLIVL 205 (350)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc-EEEEE
Confidence 57889999999995442 255666777887642 34443
No 262
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=28.61 E-value=1e+02 Score=24.47 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=29.6
Q ss_pred eeeeeeeecCCCCCCCCcccCceEEEEEEEEecCCCCC
Q 012978 413 PWLREYQVLPSRTHPCMQMSGCGGYILSGTRTATNASS 450 (452)
Q Consensus 413 ~~lR~yQVLP~RTHP~m~m~~~~GyiLsg~kv~~~~~~ 450 (452)
.|+|.|=+| |.|.-...|.-|||---+.|....+.
T Consensus 13 ~~~~KW~~L---~dP~D~~~G~kGYlKv~i~Vlg~GD~ 47 (72)
T PF08151_consen 13 QFYRKWALL---TDPDDTSAGVKGYLKVDISVLGPGDE 47 (72)
T ss_pred eeEeceEEe---cCCCCCccCCceEEEEEEEEEcCCCc
Confidence 478999999 88998899999999999888776443
No 263
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=28.41 E-value=5.8e+02 Score=25.11 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=26.9
Q ss_pred hcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCCceEEEee
Q 012978 202 MGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 202 ~anI~~g~rvLv~d~~~--GlltaAv~ermgg~G~v~~~~ 239 (452)
.+++++|.++||.+.++ |..++.++.++|- +|+...
T Consensus 160 ~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~--~v~~~~ 197 (341)
T cd08297 160 KAGLKPGDWVVISGAGGGLGHLGVQYAKAMGL--RVIAID 197 (341)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEe
Confidence 35889999999998754 6777778888865 455553
No 264
>PF08831 MHCassoc_trimer: Class II MHC-associated invariant chain trimerisation domain; InterPro: IPR011988 This entry represents the trimerisation domain of the MHC class II-associated invariant chain (Ii). Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several molecules then act upon MHC II molecules in endosomes to facilitate peptide loading: Ii-degrading proteases, the peptide exchange factor, human leukocyte antigen-DM (HLA-DM), and its modulator, HLA-DO (DO). The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1IIE_C.
Probab=28.13 E-value=3.2 Score=32.89 Aligned_cols=49 Identities=18% Similarity=0.353 Sum_probs=32.2
Q ss_pred hHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeeeeeee
Q 012978 371 DLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWLREYQ 419 (452)
Q Consensus 371 ~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~lR~yQ 419 (452)
.+..+|--+.|..+|=+..+-+.+=...|+.+=.-.+=+.+|+|+|.|=
T Consensus 6 qVk~LL~~~~P~k~~P~~n~tf~~NL~~LK~~M~~~~Wk~FEsWM~~WL 54 (72)
T PF08831_consen 6 QVKHLLLKSDPLKVYPQFNGTFLENLKHLKNQMNESDWKSFESWMHQWL 54 (72)
T ss_dssp HHHHHHHHH-TT-------S-HHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhccChhhhccccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 4556666778888898888899999999998777888899999999983
No 265
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=27.50 E-value=1.2e+02 Score=28.06 Aligned_cols=51 Identities=27% Similarity=0.390 Sum_probs=34.2
Q ss_pred HhcCCCCCCeEEEEeCCC-------cHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCC
Q 012978 201 SMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFS 256 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~-------GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~ 256 (452)
.+..+.| +.|||+|..+ |=+.+..+.+.|-.|.|+.-..+| ++.++.++||
T Consensus 51 al~~~~~-GdVlVid~~g~~~~a~~G~~~a~~a~~~G~aG~VidG~vRD----~~~i~~l~fP 108 (163)
T PRK12487 51 VLAQDGK-GKVLVVDGGGSCRRALLGDQIAQSALDNGWEGIVINGCVRD----VGALSTMDLG 108 (163)
T ss_pred HHhcCCC-CeEEEEECCCCCCcEeehHHHHHHHHHCCCeEEEEeecccC----HHHHhhCCCC
Confidence 3444555 5666776422 666777788899999999887775 3455666666
No 266
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=27.30 E-value=1.2e+02 Score=24.29 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHhcCcccccccchhHHHHHHHhcCCC
Q 012978 170 RPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVA 206 (452)
Q Consensus 170 ~pt~~~l~e~y~~Kdp~Ki~~lR~DtLa~iL~~anI~ 206 (452)
.-|+-.|.+..-.++|.++....+-.+|+||...||.
T Consensus 25 ~lsa~~If~~L~k~~~~~l~~~~~~~FGriL~~~gi~ 61 (73)
T PF12990_consen 25 WLSAAEIFERLQKKSPAALRGSNPNHFGRILQKLGIP 61 (73)
T ss_pred eecHHHHHHHHHHhCccccccCCHHHHHHHHHHcCCC
Confidence 3477788888889999999999999999999999983
No 267
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=27.17 E-value=1.7e+02 Score=23.14 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=27.8
Q ss_pred hHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceee
Q 012978 365 PWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQI 410 (452)
Q Consensus 365 P~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l 410 (452)
|++-+...+..+.+..++|+||..-.--..+...|+..+ + ++.+
T Consensus 37 p~~~~~~~~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G-~-~v~~ 80 (90)
T cd01524 37 PLDELRDRLNELPKDKEIIVYCAVGLRGYIAARILTQNG-F-KVKN 80 (90)
T ss_pred CHHHHHHHHHhcCCCCcEEEEcCCChhHHHHHHHHHHCC-C-CEEE
Confidence 334455555567888999999987544555566666543 4 5543
No 268
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=27.00 E-value=1.2e+02 Score=31.98 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=40.6
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeC------CCcHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCH
Q 012978 194 DMLSLLLSMGNVAANSDVLVVDM------AGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (452)
Q Consensus 194 DtLa~iL~~anI~~g~rvLv~d~------~~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~ 257 (452)
|.....-....+.|| .|||+|. |-|=+.+..+.+.|..|.|+.-..+| ++.+..++||-
T Consensus 276 d~~~~~~~~~~~~~G-~VlVi~~~~~~~a~~G~~~~~~a~~~G~~G~VidG~vRD----~~~i~~~~~pv 340 (430)
T PRK07028 276 DWAKPVEAIDVAKPG-DVIVIYNSSKDIAPWGELATLSCLNKGIAGVVIDGAVRD----VDEIRKLGFPV 340 (430)
T ss_pred CcHHHHHHHhcCCCC-eEEEEECCCCCceeecHHHHHHHHHCCCeEEEEeeccCC----HHHHhhCCCCe
Confidence 445544555566675 8888884 23566666688899999998877665 35667778773
No 269
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=26.89 E-value=38 Score=31.73 Aligned_cols=26 Identities=46% Similarity=0.599 Sum_probs=18.9
Q ss_pred cCCHHHH---HHHHHcCCChHHHHHHHHh
Q 012978 113 CLSGEDI---DEMRRQGATGEEIVEALIA 138 (452)
Q Consensus 113 kLs~eeI---~~lK~~g~sG~eII~~Lve 138 (452)
+||.++| .+|++.|+|-++||.+|=+
T Consensus 4 ~l~~~QieLLqrL~~SG~TK~~ii~ALe~ 32 (180)
T PF04814_consen 4 KLTIEQIELLQRLRRSGMTKEEIIHALET 32 (180)
T ss_dssp HHHHHHHHHHHHHHHCT--HHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4555664 4889999999999999965
No 270
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=26.33 E-value=1.1e+02 Score=28.05 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=52.4
Q ss_pred HHHHHHhhhccCCcEEEeCCChHHHHHHHHhcCcccc---cccchhHHHHHHHhcCCCCCCeEEEEeC-CCcH---HHHH
Q 012978 152 EKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARI---GFLRVDMLSLLLSMGNVAANSDVLVVDM-AGGL---LTGA 224 (452)
Q Consensus 152 eKYlkkK~kKy~~~~~i~~pt~~~l~e~y~~Kdp~Ki---~~lR~DtLa~iL~~anI~~g~rvLv~d~-~~Gl---ltaA 224 (452)
+||++.--..|.+||. +.....+.+..=.|.|.+. .-++-++.+ .++.|.+|+.|+..|- +.-+ =.|.
T Consensus 13 ~~~~~~g~~eY~KR~~--~~~~leliei~~~~~~~~~~~~~~~~~E~~~---il~~i~~~~~vi~Ld~~Gk~~sSe~fA~ 87 (155)
T COG1576 13 PKYVKDGIAEYLKRFP--RYLKLELIEIPEEKRGKNASAELIKKKEGEA---ILAAIPKGSYVVLLDIRGKALSSEEFAD 87 (155)
T ss_pred hHHHHHHHHHHHHHhc--cccCceEEecCCccCccccCHHHHHHHHHHH---HHHhcCCCCeEEEEecCCCcCChHHHHH
Confidence 4566666666666655 2222233333333344332 233334333 2457788999999987 3333 3445
Q ss_pred HHHHhCCCceEEEeecCCCCCchhhhhhcCCCHHHHH
Q 012978 225 VAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICK 261 (452)
Q Consensus 225 v~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~~~~~ 261 (452)
.++++...|+-+.+-.|... ++++++..
T Consensus 88 ~l~~~~~~G~~i~f~IGG~~---------Gl~~~~~~ 115 (155)
T COG1576 88 FLERLRDDGRDISFLIGGAD---------GLSEAVKA 115 (155)
T ss_pred HHHHHHhcCCeEEEEEeCcc---------cCCHHHHH
Confidence 55555566676777777643 55666654
No 271
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=26.24 E-value=72 Score=28.99 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=32.9
Q ss_pred cCCCCCccCCCEEEEEeCCCCeEEEEEEccCCEEEEcc----eeeecCCccCCCCCcEEEEeCCC
Q 012978 11 IRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGN----KNCSLQPLIGCPFGSLFQVDNGK 71 (452)
Q Consensus 11 ~~~~~~i~eGd~Vll~~~~g~~~~~v~l~~~~~v~~gK----~~f~~~~lIG~pyG~~fei~~~~ 71 (452)
.++...|..||.|++..-.- ....+++|..+-+.. +..-++-++|.| |.+.++.++.
T Consensus 28 ~SM~Ptl~~Gd~vlv~k~~~---~~~~~~rGDiVvf~~~~~~~~~~iKRVig~p-Gd~v~i~~~~ 88 (163)
T TIGR02227 28 GSMEPTLKEGDRILVNKFAY---GTSDPKRGDIVVFKDPDDNKNIYVKRVIGLP-GDKVEFRDGK 88 (163)
T ss_pred cccccchhCCCEEEEEEeEc---CCCCCCCCcEEEEecCCCCCceeEEEEEecC-CCEEEEECCE
Confidence 45666778888888764210 012234444433321 345567788887 7788887654
No 272
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=26.12 E-value=1.2e+02 Score=29.91 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHHhhhcCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCC--------------hHHHHHHHHHHHhc
Q 012978 343 ETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQY--------------LQPLATCMHSLQVR 402 (452)
Q Consensus 343 ~~~~~~~~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~--------------~epL~e~~~~L~~~ 402 (452)
+.++.+.++.+||+|+++...+ ++-+..+... +.|||+...+ .+--.++..+|.+.
T Consensus 47 ~~i~~l~~~~vDGiI~~s~~~~-~~~l~~~~~~---~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~ 116 (279)
T PF00532_consen 47 EYIELLLQRRVDGIILASSEND-DEELRRLIKS---GIPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKK 116 (279)
T ss_dssp HHHHHHHHTTSSEEEEESSSCT-CHHHHHHHHT---TSEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEecccCC-hHHHHHHHHc---CCCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhc
Confidence 5567788899999999986443 4445444433 5555555443 33445666666543
No 273
>COG2826 Tra8 Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
Probab=25.97 E-value=83 Score=31.99 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=38.3
Q ss_pred cCCHHH---HHHHHHcCCChHHHHHHHHhcccccc-----------ccccccHHHHHHHhhh
Q 012978 113 CLSGED---IDEMRRQGATGEEIVEALIANSATFE-----------KKTSFSQEKYKLKKQK 160 (452)
Q Consensus 113 kLs~ee---I~~lK~~g~sG~eII~~LvenS~tF~-----------~KT~FSqeKYlkkK~k 160 (452)
.||.+| |+.++++|+|-.||-+.|=-.++|.. -+-.+||+.|-+.++.
T Consensus 7 hLT~~eR~~I~~l~~~~~S~reIA~~LgRh~sTIsRElkRn~~~~~Y~a~~A~~~~~~~rrr 68 (318)
T COG2826 7 HLTLFERYEIERLLKAKMSIREIAKQLNRHHSTISRELKRNRTRDIYSAVKAQERYRMLRRR 68 (318)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCCcchhhHHHhcCCccceeeHHHHHHHHHHhhcc
Confidence 567766 99999999999999999988877754 3567889998765554
No 274
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=25.92 E-value=3.6e+02 Score=27.63 Aligned_cols=86 Identities=20% Similarity=0.152 Sum_probs=60.5
Q ss_pred HHHhhhcCcceEEEeCCCCCh---------HHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHHHhccCccceeeeeeee
Q 012978 345 LKLWKENGFSSMIVVAPELDP---------WSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQISEPWL 415 (452)
Q Consensus 345 ~~~~~~~~~D~liia~~~~dP---------~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~l~E~~l 415 (452)
++...++.||.+|+++. || ..+.+.++..|+|+|.++.-..+..-+......+++.-..+.. +++-
T Consensus 188 l~~~~~~~~dVii~dss--dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~-~t~y-- 262 (337)
T KOG1562|consen 188 LEDLKENPFDVIITDSS--DPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFD-LTAY-- 262 (337)
T ss_pred HHHhccCCceEEEEecC--CccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcC-ccce--
Confidence 34555789999999985 66 4567889999999999999999888888888887753222222 1111
Q ss_pred eeeeecCCCCCCCCcccCceEEEEEEE
Q 012978 416 REYQVLPSRTHPCMQMSGCGGYILSGT 442 (452)
Q Consensus 416 R~yQVLP~RTHP~m~m~~~~GyiLsg~ 442 (452)
.|- |=| ..-+|.-||+|...
T Consensus 263 -a~t-----tvP-Typsg~igf~l~s~ 282 (337)
T KOG1562|consen 263 -AIT-----TVP-TYPSGRIGFMLCSK 282 (337)
T ss_pred -eee-----cCC-CCccceEEEEEecc
Confidence 122 333 55688999999874
No 275
>PLN02256 arogenate dehydrogenase
Probab=25.44 E-value=1.5e+02 Score=29.89 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=33.5
Q ss_pred cCcceEEEeCCCCChHHHHHhH-HhcccCCCcEEEEeCChHHHHHHHHHH
Q 012978 351 NGFSSMIVVAPELDPWSFVKDL-LPLLSYSAPFAIYHQYLQPLATCMHSL 399 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~l-l~~L~pS~p~VVYsp~~epL~e~~~~L 399 (452)
.+.|.+||++|...-.+++..+ .+.++++..|+-.+..+....+.+...
T Consensus 91 ~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~ 140 (304)
T PLN02256 91 EHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQV 140 (304)
T ss_pred CCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHh
Confidence 4679999998733334556666 567788887777777777666655544
No 276
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=24.92 E-value=1.6e+02 Score=22.07 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=17.6
Q ss_pred CCccCCCEEEEEeCCCCeEEEEEEcc
Q 012978 15 QLTWEGCSVLLDINDGDRLVFARLTS 40 (452)
Q Consensus 15 ~~i~eGd~Vll~~~~g~~~~~v~l~~ 40 (452)
..+..||+|++..++++...|.++-+
T Consensus 36 ~~~~VGD~V~~~~~~~~~~~I~~vl~ 61 (68)
T cd04466 36 NPPAVGDRVEFEPEDDGEGVIEEILP 61 (68)
T ss_pred CCCCCCcEEEEEECCCCcEEEEEEec
Confidence 45678999999876555544656554
No 277
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.91 E-value=1.9e+02 Score=28.36 Aligned_cols=88 Identities=24% Similarity=0.272 Sum_probs=53.3
Q ss_pred HHHHHHHhhhccCCcEEEeCCChHHHHHHHHhc--CcccccccchhHHHHHHHhcCC----CCCCeEEEEeCCCcHHHHH
Q 012978 151 QEKYKLKKQKKYAPKVLLRRPFARSICEAYFKK--NPARIGFLRVDMLSLLLSMGNV----AANSDVLVVDMAGGLLTGA 224 (452)
Q Consensus 151 qeKYlkkK~kKy~~~~~i~~pt~~~l~e~y~~K--dp~Ki~~lR~DtLa~iL~~anI----~~g~rvLv~d~~~GlltaA 224 (452)
|--|++|-.+-=. -+-|+-|+ =|.-+|.+ +| +.++|-.-=--.--|-++ .+-+-++|+-+-+|.+|+.
T Consensus 133 QiPyi~rAv~~Gy-gviv~N~N---~~~kfye~k~np--~kyirt~veh~~yvw~~~v~pa~~~sv~vvahsyGG~~t~~ 206 (297)
T KOG3967|consen 133 QIPYIKRAVAEGY-GVIVLNPN---RERKFYEKKRNP--QKYIRTPVEHAKYVWKNIVLPAKAESVFVVAHSYGGSLTLD 206 (297)
T ss_pred cChHHHHHHHcCC-cEEEeCCc---hhhhhhhcccCc--chhccchHHHHHHHHHHHhcccCcceEEEEEeccCChhHHH
Confidence 4456666444211 35566665 23446654 55 445552221111122222 3566777778899999999
Q ss_pred HHHHhCCCceEEEeecCCCC
Q 012978 225 VAERLGGTGYVCNTCIGDSL 244 (452)
Q Consensus 225 v~ermgg~G~v~~~~~~~~~ 244 (452)
+++|.++..+|..+.-.|++
T Consensus 207 l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 207 LVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHHhcCCccceEEEEeeccc
Confidence 99999999999888766654
No 278
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=24.74 E-value=2.3e+02 Score=25.81 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=31.7
Q ss_pred HHHHHHHHhccccccccc----cccHHHHH--HHhhhccCCcEEEeCCChHHHHHHHHhcCccccccc
Q 012978 130 EEIVEALIANSATFEKKT----SFSQEKYK--LKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFL 191 (452)
Q Consensus 130 ~eII~~LvenS~tF~~KT----~FSqeKYl--kkK~kKy~~~~~i~~pt~~~l~e~y~~Kdp~Ki~~l 191 (452)
++.+++|+++...|...+ .++.+.|. .++++.+.-.++. +..|...+.+|.-.|..+--+
T Consensus 2 ~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC--~DsRv~~~~i~~~~~Gd~fvi 67 (154)
T cd03378 2 DEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSC--SDSRVPPEIIFDQGLGDLFVV 67 (154)
T ss_pred hHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEc--CCCCCCHHHHcCCCCCCEEEE
Confidence 567888999888886543 22333343 3344444333332 244444456666656433333
No 279
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=24.03 E-value=1.2e+02 Score=25.18 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=30.7
Q ss_pred hhcCcceEEEeCCC-CChHHHHHhHHhcccCCCcEEEEeCChHHHHHHH
Q 012978 349 KENGFSSMIVVAPE-LDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCM 396 (452)
Q Consensus 349 ~~~~~D~liia~~~-~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~ 396 (452)
.-..+|.+|+++.. ++ .+++-.+.-.|++||-+++++|..+......
T Consensus 8 LG~e~~~~i~d~~~g~~-pnal~a~~gtv~gGGllill~p~~~~w~~~~ 55 (92)
T PF08351_consen 8 LGQEFDLLIFDAFEGFD-PNALAALAGTVRGGGLLILLLPPWESWPQLP 55 (92)
T ss_dssp TT--BSSEEEE-SS----HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-
T ss_pred hCCccCEEEEEccCCCC-HHHHHHHhcceecCeEEEEEcCCHHHhhhcc
Confidence 34578999999843 33 4789999999999999999999876654433
No 280
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=23.92 E-value=2.1e+02 Score=25.98 Aligned_cols=52 Identities=29% Similarity=0.375 Sum_probs=34.1
Q ss_pred HhcCCCCCCeEEEEeCCC-------cHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCCH
Q 012978 201 SMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~~-------GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~~ 257 (452)
.+..++| +.|||+|..+ |=+.+..+.+.|-.|.|+.-..+|. +.++.++||-
T Consensus 47 ai~~~~~-GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~vRD~----~~i~~~~~Pv 105 (150)
T TIGR01935 47 VLEQPGA-GRVLVVDGGGSLRCALLGDNLAVLAEENGWEGVIVNGCVRDV----AELAGMDLGV 105 (150)
T ss_pred HHhcCCC-CeEEEEECCCCCceEeehHHHHHHHHHCCCEEEEEeecccCH----HHHhhCCCCE
Confidence 3444444 6677776532 5556666788899999998877753 4566667663
No 281
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.47 E-value=70 Score=29.54 Aligned_cols=37 Identities=24% Similarity=0.557 Sum_probs=31.0
Q ss_pred CccccccCcccccCCHHHHHHHHHcCC--------ChHHHHHHHH
Q 012978 101 DNRAIVDDNKAQCLSGEDIDEMRRQGA--------TGEEIVEALI 137 (452)
Q Consensus 101 dNr~i~Dd~~~QkLs~eeI~~lK~~g~--------sG~eII~~Lv 137 (452)
-||.++|.++|-=.|-+|+..|.++|. ||++|-..++
T Consensus 16 aNRRLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsgeDiT~sVL 60 (193)
T COG5394 16 ANRRLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSGEDITHSVL 60 (193)
T ss_pred ccchhcccCCceeeeHHHHHHHHhcCCceEEeeccccchhhHHHH
Confidence 699999999999999999999999984 6777655443
No 282
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.27 E-value=7.6e+02 Score=24.71 Aligned_cols=50 Identities=14% Similarity=0.307 Sum_probs=28.9
Q ss_pred hHHHHHHhhhcCcceEEEeCCCCChHHHHHhHHhcccCCCcEE-EEeCChHHHHH
Q 012978 341 SQETLKLWKENGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFA-IYHQYLQPLAT 394 (452)
Q Consensus 341 ~~~~~~~~~~~~~D~liia~~~~dP~~il~~ll~~L~pS~p~V-VYsp~~epL~e 394 (452)
..+..+.+.+.+.+.|||||.+- -.-+++.|-..+ +=||| |- |-+.|-++
T Consensus 56 ~~~i~~~l~~~~ik~lVIACNTA-Sa~al~~LR~~~--~iPVvGvi-Paik~A~~ 106 (269)
T COG0796 56 TLEIVDFLLERGIKALVIACNTA-SAVALEDLREKF--DIPVVGVI-PAIKPAVA 106 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecchH-HHHHHHHHHHhC--CCCEEEec-cchHHHHH
Confidence 34555666677799999999421 233344444444 44555 33 76666543
No 283
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=22.80 E-value=1.1e+02 Score=30.68 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=38.1
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHH
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSL 399 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L 399 (452)
..||-+||+++.++-.++++.+.|+|.+..++|....=+.....+...+
T Consensus 69 ~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~ 117 (305)
T PRK05708 69 EPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARV 117 (305)
T ss_pred cccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhC
Confidence 4789999999989889999999999999888777766655444444444
No 284
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=22.80 E-value=1.9e+02 Score=23.38 Aligned_cols=31 Identities=3% Similarity=-0.210 Sum_probs=22.2
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHhccCcccee
Q 012978 378 YSAPFAIYHQYLQPLATCMHSLQVRKMAIGLQ 409 (452)
Q Consensus 378 pS~p~VVYsp~~epL~e~~~~L~~~~~~v~l~ 409 (452)
+..++|+||..-..-..+...|+.. ++-++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~-G~~~v~ 87 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQ-GFENVY 87 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHc-CCccEE
Confidence 4889999999876667777777653 454443
No 285
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=22.74 E-value=2e+02 Score=28.45 Aligned_cols=38 Identities=32% Similarity=0.384 Sum_probs=28.7
Q ss_pred HHhcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCCceEEEee
Q 012978 200 LSMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~--GlltaAv~ermgg~G~v~~~~ 239 (452)
+..+++.+|.++||.+.++ |..++.++..+|.. ++...
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~--vi~~~ 209 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAI--VIAVA 209 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCE--EEEEe
Confidence 4567899999999998744 66777788888754 55543
No 286
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=22.65 E-value=1.6e+02 Score=29.05 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=36.7
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeCChHHHHHHHHHH
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQYLQPLATCMHSL 399 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp~~epL~e~~~~L 399 (452)
..+|-+||++|.+.-.+++..+.+++.++..++....-......+...+
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~ 115 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYF 115 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhC
Confidence 5789999999877778889999999988776666666655544444444
No 287
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=22.50 E-value=1.8e+02 Score=25.87 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=36.2
Q ss_pred hHHHHHhHHhcccCCCcEEEEeCChHHHHHH-HHHHHhccCccceeeeeeeeeeeee
Q 012978 365 PWSFVKDLLPLLSYSAPFAIYHQYLQPLATC-MHSLQVRKMAIGLQISEPWLREYQV 420 (452)
Q Consensus 365 P~~il~~ll~~L~pS~p~VVYsp~~epL~e~-~~~L~~~~~~v~l~l~E~~lR~yQV 420 (452)
|...+...+..+.++.++||||..- ..+.. ...|+.. ++.++.+.+-=+..|+-
T Consensus 35 ~~~~l~~~l~~l~~~~~vVv~c~~g-~~a~~aa~~L~~~-G~~~v~~L~GG~~aW~~ 89 (145)
T cd01535 35 LRAQLAQALEKLPAAERYVLTCGSS-LLARFAAADLAAL-TVKPVFVLEGGTAAWIA 89 (145)
T ss_pred CHHHHHHHHHhcCCCCCEEEEeCCC-hHHHHHHHHHHHc-CCcCeEEecCcHHHHHH
Confidence 4466777777788899999999984 44443 4466654 47788876655555543
No 288
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=22.40 E-value=66 Score=30.64 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=22.9
Q ss_pred HHHHhHHhcccCCCcEEEEe-CChHHHHHHHHHHHh
Q 012978 367 SFVKDLLPLLSYSAPFAIYH-QYLQPLATCMHSLQV 401 (452)
Q Consensus 367 ~il~~ll~~L~pS~p~VVYs-p~~epL~e~~~~L~~ 401 (452)
-.+..+-.+|+|+|.|||.| .+.+ -|+...+-.
T Consensus 162 ~Y~d~v~~ll~~~gifvItSCN~T~--dELv~~f~~ 195 (227)
T KOG1271|consen 162 VYLDSVEKLLSPGGIFVITSCNFTK--DELVEEFEN 195 (227)
T ss_pred eehhhHhhccCCCcEEEEEecCccH--HHHHHHHhc
Confidence 34677888999999999886 4433 455555554
No 289
>PRK06545 prephenate dehydrogenase; Validated
Probab=22.34 E-value=1.1e+02 Score=31.43 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=28.8
Q ss_pred cCcceEEEeCCCCChHHHHHhHHh-cccCCCcEEEEeCChHHHHHHHHHH
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLP-LLSYSAPFAIYHQYLQPLATCMHSL 399 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~-~L~pS~p~VVYsp~~epL~e~~~~L 399 (452)
.+.|-+|+++|...-.+++..+.+ .++++..+..-+-.+..+.+....+
T Consensus 59 ~~aDlVilavP~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 59 AEADLIVLAVPVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 467989998863222344566666 3667655555566665555554444
No 290
>PRK00865 glutamate racemase; Provisional
Probab=22.32 E-value=5.8e+02 Score=24.92 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=15.5
Q ss_pred hHHHHHHhhhcCcceEEEeCC
Q 012978 341 SQETLKLWKENGFSSMIVVAP 361 (452)
Q Consensus 341 ~~~~~~~~~~~~~D~liia~~ 361 (452)
..+..+.+.+.++|+++|||-
T Consensus 56 ~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 56 TLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred HHHHHHHHHhCCCCEEEEeCc
Confidence 345556666788999999994
No 291
>PLN03131 hypothetical protein; Provisional
Probab=22.17 E-value=69 Score=35.60 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHcCCC-hHHHHHHHHh-------ccccccccccccHHHHHHHhhh
Q 012978 113 CLSGEDIDEMRRQGAT-GEEIVEALIA-------NSATFEKKTSFSQEKYKLKKQK 160 (452)
Q Consensus 113 kLs~eeI~~lK~~g~s-G~eII~~Lve-------nS~tF~~KT~FSqeKYlkkK~k 160 (452)
+.+.++|+.|+..|.. ..+|.++-.. ....-+...+|-+.||+.||-.
T Consensus 67 ~WtdeEV~~Mk~gGN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa 122 (705)
T PLN03131 67 KFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYA 122 (705)
T ss_pred CCCHHHHHHHHHhccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhh
Confidence 4678999999988764 5666654332 1122334567889999876544
No 292
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=22.17 E-value=1.5e+02 Score=30.61 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=38.3
Q ss_pred HHHHHHhcCC-CCCCeEEEEeCCC-cHHHHHHHHHhCCCceEEEeecCCCC
Q 012978 196 LSLLLSMGNV-AANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCIGDSL 244 (452)
Q Consensus 196 La~iL~~anI-~~g~rvLv~d~~~-GlltaAv~ermgg~G~v~~~~~~~~~ 244 (452)
.|+=.++.|+ -||.++||+.++. |...+=+++|+|-+=.++....|+.-
T Consensus 79 ~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~ 129 (385)
T KOG2862|consen 79 SGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAV 129 (385)
T ss_pred chHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCc
Confidence 4555555564 5999999999955 99999999999988777776666543
No 293
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=21.99 E-value=2.3e+02 Score=27.49 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=34.7
Q ss_pred HhcCCCCCCeEEEEeCC-------CcHHHHHHHHHhCCCceEEEeecCCCCCchhhhhhcCCC
Q 012978 201 SMGNVAANSDVLVVDMA-------GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFS 256 (452)
Q Consensus 201 ~~anI~~g~rvLv~d~~-------~GlltaAv~ermgg~G~v~~~~~~~~~~~~~~~~~~nf~ 256 (452)
.+-.+.| +.|||+|.. -|=+.+..+.+.|-.|.|+.-..+| ++.+..++||
T Consensus 69 ai~~~~p-GdVlVid~~g~~~~a~~G~~~a~~a~~~G~~GiVidG~vRD----~~~i~~l~~P 126 (222)
T TIGR02798 69 AAEQIQE-GDVVVAACTAECEDGYFGDLLATSFQARGCRGLIIDAGVRD----VRDLTEMNFP 126 (222)
T ss_pred HHHhCCC-CeEEEEECCCCcceEeehHHHHHHHHHCCCeEEEEecccCC----HHHHhhCCCc
Confidence 3444455 677787642 2666777778889999999877765 3456667776
No 294
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=21.88 E-value=6.8e+02 Score=23.61 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=27.0
Q ss_pred HHhcCCCCCCeEEEEeCCC--cHHHHHHHHHhCCCceEEEee
Q 012978 200 LSMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNTC 239 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~--GlltaAv~ermgg~G~v~~~~ 239 (452)
+..+++++|+++|+.+..+ |..+..++..+|- +|+...
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~--~v~~~~ 152 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLKGA--EIYATA 152 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC--EEEEEc
Confidence 3578999999999986543 5566778888864 455553
No 295
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=21.87 E-value=1.8e+02 Score=28.95 Aligned_cols=49 Identities=27% Similarity=0.213 Sum_probs=37.9
Q ss_pred chhHHHHHHHh-cCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 192 RVDMLSLLLSM-GNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 192 R~DtLa~iL~~-anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
-.|.-||+..+ .+..+|.+||-+-..-|-=|..+++.|++.|.|+....
T Consensus 69 vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~ 118 (283)
T PF01189_consen 69 VQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDI 118 (283)
T ss_dssp EHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEES
T ss_pred ecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhcc
Confidence 34445555443 57889999776666668889999999999999999876
No 296
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=21.71 E-value=8.2e+02 Score=24.49 Aligned_cols=38 Identities=11% Similarity=-0.126 Sum_probs=28.5
Q ss_pred HHhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 200 LSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
+.+.+-.++.+||.+..|.|.++..++.+ | +.|+.++.
T Consensus 166 ~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~--~~V~gvD~ 203 (315)
T PRK03522 166 RDWVRELPPRSMWDLFCGVGGFGLHCATP-G--MQLTGIEI 203 (315)
T ss_pred HHHHHhcCCCEEEEccCCCCHHHHHHHhc-C--CEEEEEeC
Confidence 33434345789999999999999999884 2 47888875
No 297
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=21.25 E-value=7.9e+02 Score=24.12 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=24.4
Q ss_pred HHhcCCCCCCeEEEEeCC-CcHHHHHHHHHhCCCceEEEe
Q 012978 200 LSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNT 238 (452)
Q Consensus 200 L~~anI~~g~rvLv~d~~-~GlltaAv~ermgg~G~v~~~ 238 (452)
+..+++.+|.+|||...+ -|.+++.+|.++|-. .|+..
T Consensus 158 l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~-~v~~~ 196 (343)
T cd08235 158 QRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGAR-KVIVS 196 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc-EEEEE
Confidence 345689999999999531 255566677776543 24433
No 298
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.
Probab=21.25 E-value=55 Score=24.92 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=25.1
Q ss_pred ccCCHHHHHHHHHcCCChHHHHHHHHhccccc
Q 012978 112 QCLSGEDIDEMRRQGATGEEIVEALIANSATF 143 (452)
Q Consensus 112 QkLs~eeI~~lK~~g~sG~eII~~LvenS~tF 143 (452)
|.||.++|..||++. -+.|=|++||.+..+|
T Consensus 18 ~SLsd~~i~~Lr~ev-l~seGV~~LVS~D~~~ 48 (57)
T PF11961_consen 18 QSLSDEEIARLREEV-LRSEGVRKLVSDDDSF 48 (57)
T ss_pred HHcChHHHHHHHHHH-hhhHHHHHHcCCCHHH
Confidence 789999999999985 4566688888876655
No 299
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=21.07 E-value=66 Score=32.07 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=24.0
Q ss_pred CCChHHHHHhHHhcccCCCcEEE-----EeCChH
Q 012978 362 ELDPWSFVKDLLPLLSYSAPFAI-----YHQYLQ 390 (452)
Q Consensus 362 ~~dP~~il~~ll~~L~pS~p~VV-----Ysp~~e 390 (452)
-.+|..+|..+...|+|.|.+++ |+||+|
T Consensus 164 c~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE 197 (265)
T PF05219_consen 164 CDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVE 197 (265)
T ss_pred cCCHHHHHHHHHHHhCCCCEEEEEEEecccccEE
Confidence 36899999999999999997543 777776
No 300
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=87 Score=31.27 Aligned_cols=54 Identities=17% Similarity=0.067 Sum_probs=39.5
Q ss_pred ccccccchhHHHHHHHh-cCCCCCC-eEEEEeCCCcHHHHHHHHHhCCCceEEEeec
Q 012978 186 ARIGFLRVDMLSLLLSM-GNVAANS-DVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (452)
Q Consensus 186 ~Ki~~lR~DtLa~iL~~-anI~~g~-rvLv~d~~~GlltaAv~ermgg~G~v~~~~~ 240 (452)
..+.-=|+||--.+-.. ..+.... ++|.++||+|.++.+++.+. +...|+....
T Consensus 87 ~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Di 142 (280)
T COG2890 87 EGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDI 142 (280)
T ss_pred CCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEEC
Confidence 45667788887666553 3554445 69999999999999999875 4457777765
No 301
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=20.80 E-value=86 Score=25.04 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHH
Q 012978 196 LSLLLSMGNVAANSDVLVVDMAGGLLTG 223 (452)
Q Consensus 196 La~iL~~anI~~g~rvLv~d~~~Gllta 223 (452)
|+..+--..+++|+++|++..+.|+-.+
T Consensus 57 L~~~~~~g~~~~Gd~vl~~~~G~G~~~~ 84 (90)
T PF08541_consen 57 LADALEEGRIKPGDRVLLVGFGAGFSWG 84 (90)
T ss_dssp HHHHHHTTSSCTTEEEEEEEEETTTEEE
T ss_pred HHHHHHcCCCCCCCEEEEEEEEhhheeE
Confidence 5556666688999999999998886443
No 302
>TIGR03318 YdfZ_fam putative selenium-binding protein YdfZ. This small protein has a very limited distribution, being found so far only among some gamma-Proteobacteria. The member from Escherichia coli was shown to bind selenium in the absence of a working SelD-dependent selenium incorporation system. Note that while the E. coli member contains a single Cys residue, a likely selenium binding site, some other members of this protein family contain two Cys residues or none.
Probab=20.53 E-value=47 Score=25.79 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=18.8
Q ss_pred CCCCCeEEEEeCCC-cHHHHHHHHHh
Q 012978 205 VAANSDVLVVDMAG-GLLTGAVAERL 229 (452)
Q Consensus 205 I~~g~rvLv~d~~~-GlltaAv~erm 229 (452)
|.+|+||++..++. |++.|.-++-|
T Consensus 11 it~G~rVMia~tG~tgvikaIh~dgl 36 (65)
T TIGR03318 11 ITTGSRVMIAGTGHTGVIKAIHTEGL 36 (65)
T ss_pred cCCCcEEEEecCCccceeehhhhCCC
Confidence 67899999999854 77776665544
No 303
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.49 E-value=1.4e+02 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCcHHHHHHHHHhCCC
Q 012978 208 NSDVLVVDMAGGLLTGAVAERLGGT 232 (452)
Q Consensus 208 g~rvLv~d~~~GlltaAv~ermgg~ 232 (452)
-.=+++++.+||+++++++.++|+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~ 68 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQ 68 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCC
Confidence 4678999999999999999999954
No 304
>PF14001 YdfZ: YdfZ protein
Probab=20.46 E-value=35 Score=26.48 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=11.7
Q ss_pred CCCCCeEEEEeCCC
Q 012978 205 VAANSDVLVVDMAG 218 (452)
Q Consensus 205 I~~g~rvLv~d~~~ 218 (452)
|.+|+||++.+++.
T Consensus 10 i~~G~rVMiagtG~ 23 (64)
T PF14001_consen 10 ITTGSRVMIAGTGA 23 (64)
T ss_pred CCCCCEEEEcCCCc
Confidence 67899999998853
No 305
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=20.21 E-value=1.9e+02 Score=23.76 Aligned_cols=8 Identities=0% Similarity=0.306 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 012978 393 ATCMHSLQ 400 (452)
Q Consensus 393 ~e~~~~L~ 400 (452)
.+....++
T Consensus 68 ~~~~~~f~ 75 (131)
T cd00079 68 EEVLKDFR 75 (131)
T ss_pred HHHHHHHH
Confidence 33333444
No 306
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=20.07 E-value=2.6e+02 Score=29.41 Aligned_cols=49 Identities=6% Similarity=-0.010 Sum_probs=31.5
Q ss_pred cchhHHHHHHHhcCCCCCCeEEEEeCCC-cHHHHHHH-HHhCCCceEEEeecC
Q 012978 191 LRVDMLSLLLSMGNVAANSDVLVVDMAG-GLLTGAVA-ERLGGTGYVCNTCIG 241 (452)
Q Consensus 191 lR~DtLa~iL~~anI~~g~rvLv~d~~~-GlltaAv~-ermgg~G~v~~~~~~ 241 (452)
-|.+.+|.-|...++.+|.+|+++..-+ -.+.+.++ -+.| ..++.++.+
T Consensus 45 ~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G--~~~v~l~~~ 95 (517)
T PRK08008 45 EEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG--AIMVPINAR 95 (517)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC--eEEEEcCcc
Confidence 4577888888888999999999996644 44444443 3333 234445443
No 307
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=20.04 E-value=8.2e+02 Score=23.84 Aligned_cols=34 Identities=9% Similarity=0.191 Sum_probs=20.9
Q ss_pred cCcceEEEeCCCCChHHHHHhHHhcccCCCcEEEEeC
Q 012978 351 NGFSSMIVVAPELDPWSFVKDLLPLLSYSAPFAIYHQ 387 (452)
Q Consensus 351 ~~~D~liia~~~~dP~~il~~ll~~L~pS~p~VVYsp 387 (452)
+++| +++++- ..-..+...+..|+++|.|+.++.
T Consensus 225 ~~vd-~v~~~~--~~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 225 YGFD-VVIEAT--GVPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCCc-EEEECC--CChHHHHHHHHHHhcCCEEEEEec
Confidence 4567 444441 123567777777888888877754
Done!