BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012979
         (452 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
           Complexed With Trna(Tyr) And L-Tyrosine
 pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
           Synthetase
 pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
           Synthetase
          Length = 306

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 181 TKLTLEFIRLEDEDLDKVNDCFPCLQVLNL------VGVGGFRQPKIHLL 224
            + ++E I  EDE+       +P +QV ++      V VGG  Q KIH+L
Sbjct: 130 ARRSMELIAREDENPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHML 179


>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
           With P-(2- Tetrazolyl)-Phenylalanine
 pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
           With P-(2- Tetrazolyl)-Phenylalanine
          Length = 314

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 184 TLEFIRLEDEDLDKVNDCFPCLQVLNL------VGVGGFRQPKIHLL 224
           ++E I  EDE+       +P +QV  +      V VGG  Q KIH+L
Sbjct: 133 SMELIAREDENPKVAEVIYPIMQVNGIHYVGGDVAVGGMEQRKIHML 179


>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
           Phenylalanyl-Trna Synthetase
 pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
           Phenylalanyl-Trna Synthetase
          Length = 314

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 184 TLEFIRLEDEDLDKVNDCFPCLQVLNL------VGVGGFRQPKIHLL 224
           ++E I  EDE+       +P +QV  L      V VGG  Q KIH+L
Sbjct: 133 SMELIAREDENPKVAEVIYPIMQVNPLHYEGVDVAVGGMEQRKIHML 179


>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
           Sythetase In Complex With P-Bromo-L-Phenylalanine
          Length = 314

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 184 TLEFIRLEDEDLDKVNDCFPCLQVLNL------VGVGGFRQPKIHLL 224
           ++E I  EDE+       +P +QV  L      V VGG  Q KIH+L
Sbjct: 133 SMELIAREDENPKVAEVIYPIMQVNPLHYEGVDVAVGGMEQRKIHML 179


>pdb|3FEO|A Chain A, The Crystal Structure Of Mbtd1
 pdb|3FEO|B Chain B, The Crystal Structure Of Mbtd1
          Length = 437

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 69  PFKSILENLVRNSRHLESVSIGVDKSLVG----ISYDDAEDESDDLY 111
           PFK  +   V + RHL    + V +S++G    + Y+++ED +DD +
Sbjct: 155 PFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFW 201


>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
           Synthetase Specific For O-Methyl-Tyrosine
 pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
           Synthetase Specific For O-Methyl-Tyrosine
          Length = 312

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 181 TKLTLEFIRLEDEDLDKVNDCFPCLQVLNL------VGVGGFRQPKIHLL 224
            + ++E I  EDE+       +P +QV  +      V VGG  Q KIH+L
Sbjct: 130 ARRSMELIAREDENPKVAEVIYPIMQVNAIHYPGVDVAVGGMEQRKIHML 179


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,231,831
Number of Sequences: 62578
Number of extensions: 456248
Number of successful extensions: 852
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 11
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)