BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012979
(452 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M0E1|FBL77_ARATH F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana
GN=At4g29420 PE=2 SV=1
Length = 446
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/451 (54%), Positives = 322/451 (71%), Gaps = 11/451 (2%)
Query: 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVT 62
+ LP L ++ILSR+ DS LARCRV SKTLNSL +EVR++NL+CT SRY++SR
Sbjct: 2 DELPPELWIKILSRINDSESLARCRVASKTLNSLSREVRAVNLICTWSRYLKSR------ 55
Query: 63 AAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDD-AEDESDDLYLTDVEFVKNW 121
+ VTPFK+I +L+ NS + S+S+GVDK+L G+S+DD E++S DLYLTDVEFVK W
Sbjct: 56 SIVVVTPFKTIFRSLIENSSKIRSISVGVDKALKGMSFDDFNEEDSKDLYLTDVEFVKEW 115
Query: 122 LPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLT 181
LP V E+L+ LSISD W QSCWRKS++LA ISS C LV+LEVKNAWLSV L +MP L
Sbjct: 116 LPRVREDLENLSISDFWIQSCWRKSDILALISSNCSKLVKLEVKNAWLSVVGLTEMPNLR 175
Query: 182 KLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLA 241
LTLEFIRL+DE+L+KVNDCFP LQ LNL+GVGG ++P+IH LHLKSC WTVSNAPLSLA
Sbjct: 176 YLTLEFIRLDDENLEKVNDCFPFLQELNLIGVGGLKEPRIHFLHLKSCHWTVSNAPLSLA 235
Query: 242 IYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL 301
I APNL++L+L+C KPKSL+++TP L LS+E A + F EF++L L+L S + L
Sbjct: 236 IVAPNLLELKLKCNKPKSLLVETPKLVQCHLSVEDAEGVSFGEFQDLKTLELVSPDMYRL 295
Query: 302 INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFD- 360
I+ FG IKKL V+ +K E L L + FP ++SL+L PR WS ++++F
Sbjct: 296 ISNISFGNKIKKLAVDSVKSIEQSERLELGLATILKAFPGITSLSLSPRTWSDIETHFQS 355
Query: 361 KGRLEIRTEMKVLKEIIARLVVDD---ISVTRSFIFAIMNICSNLSDMALLIHREEDSIT 417
+G L LK+I AR+ + D + T SFI +I+N L+DM L+IH+++D
Sbjct: 356 QGGLGDMKGTDSLKQITARVQMSDHTNVHQTVSFIRSIVNKYRGLTDMRLMIHQDKDPRV 415
Query: 418 ASNLISSCTVDHPRVRWRWGMWKEGTEDTWV 448
SNLIS+C + +PRVRW+WGMW EG ED WV
Sbjct: 416 RSNLISTCMMSNPRVRWKWGMWAEGGEDMWV 446
>sp|Q9LM18|FB303_ARATH F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2
SV=1
Length = 314
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVT 62
+ LP P+I++IL+++ D L RC +SK NSL + S+ L RL V+
Sbjct: 5 DGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTL----------RLDHSVS 54
Query: 63 AAPRVTP-FKSILENLV 78
+P VT F+S+ LV
Sbjct: 55 DSPVVTSIFRSLFNGLV 71
>sp|Q9C9S2|FB91_ARATH F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1
SV=1
Length = 334
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVT 62
+ +P P++++IL+R+ D L RCR VSK NSL + S L+ L + + +
Sbjct: 5 DAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSES--LLLQLDQILGATESDSEI 62
Query: 63 AAPRVTPFKSILENL 77
+P + F+S+ +++
Sbjct: 63 DSPIASFFRSLFKSI 77
>sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2
SV=1
Length = 610
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 24/145 (16%)
Query: 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKN----AWLSVDNLNQ-MPMLT 181
++LK L++SDC+F SC + L I+ CK L +E+ ++ + + P L
Sbjct: 320 KKLKDLTLSDCYFVSC----KGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLK 375
Query: 182 KLTLEFI-RLEDEDLDKVNDCFPCLQVLNLV---GVG---------GFRQPKIHLLHLKS 228
+L L + R+ + L ++ L++L+LV G+G G R K LH++
Sbjct: 376 ELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLK--KLHIRR 433
Query: 229 CLWTVSNAPLSLAIYAPNLVKLELR 253
C + +S+ + +L +L LR
Sbjct: 434 CYEIGNKGIISIGKHCKSLTELSLR 458
>sp|P0CA02|PP220_ASFM2 Polyprotein pp220 OS=African swine fever virus (isolate
Tick/Malawi/Lil 20-1/1983) GN=Mal-100 PE=3 SV=1
Length = 2475
Score = 33.5 bits (75), Expect = 3.1, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 14 LSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSI 73
L + ++ L R ++ + LN K ++ N + + +L +++ P +T +
Sbjct: 375 LDKRIEAQRLDRKHILMEFLN---KSTQAYNDFLENVKKIGIKLVKEIALTPNITRLRDA 431
Query: 74 LENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCE-ELKFL 132
L SR + +I +D SL+G + A E + +LT + VKN L + + + F
Sbjct: 432 L------SRINDMGTIALDLSLIGFYTNAAAREERETFLTQLTLVKNVLEEISKTDPNFK 485
Query: 133 SISDCWFQSCWRKSEVLAFIS 153
++ D SC+R +++ F +
Sbjct: 486 NLYD----SCFRLLQIIDFYT 502
>sp|P0C2G2|FB21_ARATH Putative F-box protein At1g30920 OS=Arabidopsis thaliana
GN=At1g30920 PE=4 SV=1
Length = 400
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLS 50
+ +P LIL+ILSRL S +ARCR VSK S+ ++ L T S
Sbjct: 8 DSIPIDLILDILSRLP-SKSIARCRCVSKLWESMIRQSYFTELFLTRS 54
>sp|A9GI17|SECA_SORC5 Protein translocase subunit SecA OS=Sorangium cellulosum (strain So
ce56) GN=secA PE=3 SV=1
Length = 1011
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 22/145 (15%)
Query: 309 KTIKKLK--VELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL---GPRAWSAVQSNFDKGR 363
+TIK L VEL++P ++G L +F N + L G R V+ +F+K
Sbjct: 686 RTIKPLASIVELVRP---------DVGYLLGMFANDPVMPLDADGNR-REIVRKDFEKTE 735
Query: 364 LEIRTEMKVLKEIIARLVVD-DISVTRSFIFAIMNICSNLSDMALLIHREE-----DSIT 417
+ E + +EI R V ++ + I + CS L +AL RE D I
Sbjct: 736 RFVELE-NMQREIYTRWGVKIELETRADKVLEIYDECSELMPLALTEQRERLLDLMDRII 794
Query: 418 ASNLISSCTVDHPRVRWRWGMWKEG 442
+ + SC P W WG +G
Sbjct: 795 GAMVEESCPARKPPEDWDWGGIFQG 819
>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana
GN=At5g53840 PE=2 SV=1
Length = 444
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 31/177 (17%)
Query: 156 CKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDED-LDKVNDCFPCLQVLNLVGVG 214
C +LV L++ + +P L L L+F+ +E LDK+ C P L+ L +V
Sbjct: 140 CDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDKIISCSPVLEELTIVKSS 199
Query: 215 GFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSL 274
+ + ++ ++S V++ R + LV+ TPLL +
Sbjct: 200 ---EDNVKIIQVRS--------------QTLKRVEIHRRFDRHNGLVIDTPLLQFLSIK- 241
Query: 275 EVANEIRFQEFRNL---------MNLQLESSSLSSLINTFPFGKTIKKLKVELLKPG 322
A+ I+ EF NL +NL L+ + LS+ T F TI +++ +++ G
Sbjct: 242 --AHSIKSIEFINLGFTTKVDIDVNL-LDPNDLSNRSMTRDFFTTISRVRSLVIRHG 295
>sp|Q9FNK5|FB285_ARATH F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2
SV=1
Length = 395
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSI 43
+HLP ++L + +++ D L RC VVS+ +SL +V ++
Sbjct: 28 DHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNV 68
>sp|P0CA04|PP220_ASFWA Polyprotein pp220 OS=African swine fever virus (isolate
Warthog/Namibia/Wart80/1980) GN=War-102 PE=3 SV=1
Length = 2475
Score = 32.7 bits (73), Expect = 6.7, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 14 LSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSI 73
L R ++ L R ++ + LN K ++ N + + +L +++ P +T +
Sbjct: 375 LDRRIEAQRLDRKHILMEFLN---KSTQAYNDFLENVKKIGIKLVKEIALTPNITRLRDA 431
Query: 74 LENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLS 133
L SR + +I +D SL+G + A E + +LT VKN L E+ K
Sbjct: 432 L------SRINDMGTIALDLSLIGFYTNAAAREERETFLTQFMLVKNVLE---EQSKIDP 482
Query: 134 ISDCWFQSCWRKSEVLAFIS 153
+ SC R +++ F +
Sbjct: 483 NFKNLYDSCSRLLQIIDFYT 502
>sp|Q9SD71|FB194_ARATH Putative F-box protein At3g47020 OS=Arabidopsis thaliana
GN=At3g47020 PE=4 SV=1
Length = 313
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSL 36
+ +P L++EI SRL+ + D+ARCR VSK +S+
Sbjct: 20 KEIPIDLLIEIFSRLS-TGDIARCRCVSKIWSSV 52
>sp|Q08358|PP220_ASFB7 Polyprotein pp220 OS=African swine fever virus (strain Badajoz 1971
Vero-adapted) GN=Ba71V-92 PE=1 SV=3
Length = 2475
Score = 32.3 bits (72), Expect = 7.5, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 14 LSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSI 73
L R ++ L R ++ + LN K ++ N + + +L +++ P +T +
Sbjct: 375 LDRRIEAQRLDRKHILMEFLN---KSTQAYNDFLENVKKIGIKLVKEIALTPNITRLRDA 431
Query: 74 LENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLS 133
L SR + +I +D SL+G + A E + +LT VKN L E+ K
Sbjct: 432 L------SRINDMGTIALDLSLIGFYTNAAAREERETFLTQFMLVKNVLE---EQSKIDP 482
Query: 134 ISDCWFQSCWRKSEVLAFIS 153
+ SC R +++ F +
Sbjct: 483 NFKNLYDSCSRLLQIIDFYT 502
>sp|P0CA01|PP220_ASFK5 Polyprotein pp220 OS=African swine fever virus (isolate
Pig/Kenya/KEN-50/1950) GN=Ken-104 PE=3 SV=1
Length = 2475
Score = 32.3 bits (72), Expect = 8.0, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 22/145 (15%)
Query: 14 LSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSI 73
L + ++ L R ++ + LN K ++ N + + +L +++ P +T +
Sbjct: 375 LDKRMEAQRLDRKHILMEFLN---KSTQAYNDFLENVKKIGMKLVKEIALTPNITKLRDA 431
Query: 74 LENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEEL---- 129
L SR + +I +D SL+G + A E + +L + VKN V EEL
Sbjct: 432 L------SRINDMGTIALDLSLIGFYNNAAAREERETFLIQLTLVKN----VLEELAKTD 481
Query: 130 -KFLSISDCWFQSCWRKSEVLAFIS 153
F ++ D SC+R +++ F +
Sbjct: 482 PNFKNLYD----SCFRLLQIIDFYT 502
>sp|O49508|FB237_ARATH F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2
SV=1
Length = 380
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSI 43
++LP ++L I + + D L RC VVSK +SL +V ++
Sbjct: 26 DNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENV 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,439,011
Number of Sequences: 539616
Number of extensions: 6106901
Number of successful extensions: 14950
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 14937
Number of HSP's gapped (non-prelim): 26
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)