Query 012979
Match_columns 452
No_of_seqs 197 out of 307
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:17:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.2 1.9E-12 4.2E-17 124.9 -1.6 265 2-350 98-373 (419)
2 KOG4341 F-box protein containi 99.0 5.9E-11 1.3E-15 119.3 -0.5 346 2-433 72-455 (483)
3 PF12937 F-box-like: F-box-lik 98.3 6.2E-07 1.3E-11 64.0 2.8 35 3-38 2-36 (47)
4 PF08387 FBD: FBD; InterPro: 98.0 8E-06 1.7E-10 59.5 3.6 38 371-409 14-51 (51)
5 smart00256 FBOX A Receptor for 97.9 1.5E-05 3.2E-10 54.5 4.4 32 5-37 1-32 (41)
6 PF00646 F-box: F-box domain; 97.8 9E-06 2E-10 58.0 1.3 36 3-39 4-39 (48)
7 PLN00113 leucine-rich repeat r 97.7 0.00013 2.8E-09 84.0 10.3 60 284-350 282-342 (968)
8 KOG4194 Membrane glycoprotein 97.7 1.4E-05 2.9E-10 84.2 1.6 104 243-353 315-429 (873)
9 PLN00113 leucine-rich repeat r 97.7 0.00012 2.5E-09 84.4 9.1 188 153-349 160-365 (968)
10 smart00579 FBD domain in FBox 97.7 4.9E-05 1.1E-09 59.3 4.0 44 371-415 5-48 (72)
11 PLN03210 Resistant to P. syrin 97.2 0.0012 2.5E-08 77.7 9.4 58 155-214 609-668 (1153)
12 cd00116 LRR_RI Leucine-rich re 97.1 0.00019 4.1E-09 71.2 1.3 85 126-213 80-175 (319)
13 KOG3665 ZYG-1-like serine/thre 96.8 0.00035 7.5E-09 77.3 0.6 148 157-347 122-282 (699)
14 KOG3207 Beta-tubulin folding c 96.7 0.00031 6.7E-09 71.9 -0.7 82 153-254 142-231 (505)
15 cd00116 LRR_RI Leucine-rich re 96.7 0.0008 1.7E-08 66.7 2.2 89 126-214 50-148 (319)
16 PLN03210 Resistant to P. syrin 96.7 0.0085 1.8E-07 70.6 10.7 187 154-349 631-834 (1153)
17 KOG2120 SCF ubiquitin ligase, 96.4 0.00077 1.7E-08 66.2 -0.4 127 126-257 233-375 (419)
18 PF07723 LRR_2: Leucine Rich R 96.2 0.0054 1.2E-07 38.1 2.9 25 179-203 1-26 (26)
19 KOG4194 Membrane glycoprotein 96.2 0.00081 1.8E-08 71.2 -1.3 166 125-319 267-449 (873)
20 PF14580 LRR_9: Leucine-rich r 95.8 0.0028 6E-08 58.3 0.3 15 173-187 59-73 (175)
21 PF14580 LRR_9: Leucine-rich r 95.6 0.0035 7.7E-08 57.7 0.1 112 120-255 35-150 (175)
22 KOG1909 Ran GTPase-activating 95.2 0.0068 1.5E-07 60.8 0.8 40 174-213 88-130 (382)
23 PF13855 LRR_8: Leucine rich r 95.1 0.016 3.5E-07 43.2 2.5 54 158-212 2-58 (61)
24 KOG3207 Beta-tubulin folding c 95.0 0.0058 1.3E-07 62.9 -0.3 124 125-254 144-280 (505)
25 KOG0617 Ras suppressor protein 94.4 0.0024 5.2E-08 58.2 -4.3 152 154-350 30-183 (264)
26 KOG1947 Leucine rich repeat pr 93.3 0.035 7.7E-07 58.0 1.4 62 153-214 239-306 (482)
27 KOG4341 F-box protein containi 92.8 0.022 4.7E-07 58.5 -1.1 58 285-347 400-459 (483)
28 KOG1947 Leucine rich repeat pr 92.7 0.026 5.6E-07 59.0 -0.8 86 126-215 187-281 (482)
29 KOG1909 Ran GTPase-activating 92.6 0.042 9.2E-07 55.2 0.7 79 175-253 182-278 (382)
30 PLN03215 ascorbic acid mannose 92.5 0.12 2.5E-06 53.1 3.7 36 3-38 5-40 (373)
31 KOG0281 Beta-TrCP (transducin 92.2 0.13 2.7E-06 51.5 3.4 35 3-38 76-114 (499)
32 KOG0444 Cytoskeletal regulator 92.0 0.0057 1.2E-07 65.5 -6.6 78 126-213 172-255 (1255)
33 KOG3665 ZYG-1-like serine/thre 91.9 0.068 1.5E-06 59.5 1.3 123 125-255 120-260 (699)
34 PF12799 LRR_4: Leucine Rich r 91.4 0.13 2.7E-06 36.1 1.8 34 178-213 1-34 (44)
35 KOG0618 Serine/threonine phosp 91.4 0.029 6.2E-07 62.7 -2.3 106 147-255 374-486 (1081)
36 PRK15370 E3 ubiquitin-protein 91.2 0.67 1.4E-05 52.2 8.2 12 178-189 220-231 (754)
37 KOG1644 U2-associated snRNP A' 91.2 0.26 5.6E-06 46.3 4.1 83 155-254 62-149 (233)
38 PRK15370 E3 ubiquitin-protein 90.9 0.61 1.3E-05 52.5 7.4 51 157-212 220-271 (754)
39 PF13855 LRR_8: Leucine rich r 90.9 0.27 5.7E-06 36.5 3.2 53 128-187 2-58 (61)
40 KOG2123 Uncharacterized conser 89.6 0.022 4.9E-07 55.7 -4.5 66 281-349 58-126 (388)
41 PF12799 LRR_4: Leucine Rich r 89.5 0.17 3.7E-06 35.4 1.0 34 158-191 2-37 (44)
42 PRK15387 E3 ubiquitin-protein 89.1 2.6 5.6E-05 47.7 10.5 20 333-352 438-457 (788)
43 KOG0444 Cytoskeletal regulator 88.7 0.023 5E-07 61.0 -5.5 56 153-212 122-182 (1255)
44 PRK15387 E3 ubiquitin-protein 88.4 1 2.3E-05 50.8 6.9 88 158-254 223-311 (788)
45 KOG4658 Apoptotic ATPase [Sign 87.1 0.3 6.5E-06 55.9 1.6 76 155-234 569-652 (889)
46 KOG2997 F-box protein FBX9 [Ge 85.0 0.88 1.9E-05 45.3 3.5 43 3-45 108-157 (366)
47 KOG1644 U2-associated snRNP A' 84.5 2 4.4E-05 40.4 5.4 77 157-253 42-121 (233)
48 PLN03150 hypothetical protein; 82.2 1.2 2.6E-05 49.2 3.6 54 159-213 420-476 (623)
49 KOG0618 Serine/threonine phosp 77.1 0.73 1.6E-05 52.0 -0.2 66 148-214 421-487 (1081)
50 PLN03150 hypothetical protein; 73.3 3.6 7.9E-05 45.4 4.1 78 129-213 420-500 (623)
51 PRK15386 type III secretion pr 73.2 9.2 0.0002 40.1 6.7 11 203-213 94-104 (426)
52 KOG1259 Nischarin, modulator o 72.1 0.56 1.2E-05 46.6 -2.3 40 172-212 368-408 (490)
53 KOG2739 Leucine-rich acidic nu 71.1 2.2 4.8E-05 41.5 1.5 83 126-212 64-152 (260)
54 KOG2739 Leucine-rich acidic nu 67.7 2.2 4.7E-05 41.5 0.7 57 157-213 43-101 (260)
55 KOG2982 Uncharacterized conser 67.1 1.7 3.7E-05 43.3 -0.2 51 161-211 49-105 (418)
56 KOG2123 Uncharacterized conser 63.4 0.74 1.6E-05 45.4 -3.4 56 155-211 39-96 (388)
57 COG4886 Leucine-rich repeat (L 62.6 4.8 0.0001 41.3 2.1 54 157-214 116-174 (394)
58 KOG3864 Uncharacterized conser 61.0 2.6 5.5E-05 39.7 -0.2 41 174-214 121-162 (221)
59 KOG1259 Nischarin, modulator o 60.9 6.2 0.00013 39.5 2.4 54 156-211 181-245 (490)
60 smart00367 LRR_CC Leucine-rich 58.4 4.7 0.0001 24.5 0.8 16 202-217 1-16 (26)
61 KOG2982 Uncharacterized conser 56.3 3.1 6.7E-05 41.5 -0.5 84 123-211 67-154 (418)
62 PF13516 LRR_6: Leucine Rich r 56.3 4.5 9.7E-05 24.0 0.4 20 178-197 2-21 (24)
63 KOG3864 Uncharacterized conser 49.3 3.8 8.3E-05 38.6 -1.1 57 155-212 123-185 (221)
64 KOG4658 Apoptotic ATPase [Sign 46.5 7.4 0.00016 44.8 0.4 80 126-212 570-651 (889)
65 KOG0531 Protein phosphatase 1, 43.4 11 0.00024 39.3 1.1 55 155-213 93-150 (414)
66 KOG0274 Cdc4 and related F-box 43.0 11 0.00025 40.8 1.1 37 3-40 109-145 (537)
67 KOG0617 Ras suppressor protein 40.1 9.8 0.00021 35.2 0.1 15 281-295 168-182 (264)
68 COG5238 RNA1 Ran GTPase-activa 37.3 47 0.001 33.0 4.3 121 74-213 84-224 (388)
69 PF13013 F-box-like_2: F-box-l 36.5 48 0.001 28.0 3.7 28 3-31 23-50 (109)
70 KOG0472 Leucine-rich repeat pr 36.2 6.6 0.00014 40.8 -1.8 38 174-213 501-538 (565)
71 PRK15386 type III secretion pr 36.0 76 0.0016 33.4 5.8 19 72-91 43-61 (426)
72 KOG3926 F-box proteins [Amino 31.3 40 0.00087 33.2 2.7 32 2-33 202-233 (332)
73 KOG1859 Leucine-rich repeat pr 29.0 4.7 0.0001 44.8 -4.4 36 174-212 183-218 (1096)
74 COG3130 Rmf Ribosome modulatio 26.3 11 0.00024 27.0 -1.5 26 424-449 28-54 (55)
75 KOG1859 Leucine-rich repeat pr 26.2 6.2 0.00014 43.9 -4.1 56 155-212 231-288 (1096)
76 smart00368 LRR_RI Leucine rich 23.4 24 0.00052 21.9 -0.2 19 178-196 2-20 (28)
77 KOG0472 Leucine-rich repeat pr 22.5 50 0.0011 34.6 1.7 98 153-255 431-538 (565)
78 PF13504 LRR_7: Leucine rich r 21.9 55 0.0012 17.8 1.1 11 203-213 1-11 (17)
79 KOG0531 Protein phosphatase 1, 20.4 29 0.00062 36.1 -0.5 56 154-213 115-172 (414)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.9e-12 Score=124.92 Aligned_cols=265 Identities=18% Similarity=0.205 Sum_probs=154.6
Q ss_pred CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc---CcceeeeecchhhhhccCCccccCCCCCCcH-HHHHHHH
Q 012979 2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE---VRSINLVCTLSRYVQSRLPQQVTAAPRVTPF-KSILENL 77 (452)
Q Consensus 2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~---~~sl~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 77 (452)
+++|||||+..|+|-|+ .||.-+.+.|||||+++..+ |..+++.. ++. .++..++
T Consensus 98 ~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~--------------------r~i~p~~l~~l 156 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTG--------------------RNIHPDVLGRL 156 (419)
T ss_pred cccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCC--------------------CccChhHHHHH
Confidence 47899999999999997 99999999999999999754 33333321 111 1356666
Q ss_pred HhcCC-CceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccceecccC
Q 012979 78 VRNSR-HLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCC 156 (452)
Q Consensus 78 l~~~~-~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c 156 (452)
++|.- .+|.-+ .+ | .+|++. .-.......||+|+|++..- ....+-.++..|
T Consensus 157 ~~rgV~v~Rlar----------~~------~-----~~prla-e~~~~frsRlq~lDLS~s~i-----t~stl~~iLs~C 209 (419)
T KOG2120|consen 157 LSRGVIVFRLAR----------SF------M-----DQPRLA-EHFSPFRSRLQHLDLSNSVI-----TVSTLHGILSQC 209 (419)
T ss_pred HhCCeEEEEcch----------hh------h-----cCchhh-hhhhhhhhhhHHhhcchhhe-----eHHHHHHHHHHH
Confidence 66642 222211 11 1 122222 22222345689999975321 112344555679
Q ss_pred CCCcEEEeeceeecCC---CCCCCCCCceeeeeeE-eecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEee
Q 012979 157 KSLVELEVKNAWLSVD---NLNQMPMLTKLTLEFI-RLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWT 232 (452)
Q Consensus 157 ~~L~~L~L~~~~~d~~---~l~~fp~Lr~L~L~~v-~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~ 232 (452)
..|+.|.|+|.-+|.+ .++.=.+|+.|+|..+ .++..+++-+++.|..|+.|+|.+|+-... .
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~-~------------ 276 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE-K------------ 276 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch-h------------
Confidence 9999999999555432 3566688999999765 567889999999999999999988753321 0
Q ss_pred ecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccc--cccccccccCCc
Q 012979 233 VSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSL--SSLINTFPFGKT 310 (452)
Q Consensus 233 ~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~l~~~~p~ 310 (452)
+.-.+.-..|+|.+|.+.++.. .++. .+.. .....|++|-+|+++.+.. ...+..+-..+.
T Consensus 277 ---Vtv~V~hise~l~~LNlsG~rr-----------nl~~--sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 277 ---VTVAVAHISETLTQLNLSGYRR-----------NLQK--SHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred ---hhHHHhhhchhhhhhhhhhhHh-----------hhhh--hHHH-HHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 0011222346777777754421 1110 0000 1234567777777764211 122333344566
Q ss_pred eeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 311 IKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 311 lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
+++|.+ ..|....-.++ --+++-|.|..|++.+-
T Consensus 340 L~~lSl-sRCY~i~p~~~-----~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSL-SRCYDIIPETL-----LELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeeh-hhhcCCChHHe-----eeeccCcceEEEEeccc
Confidence 666664 22321111111 23556677777777654
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.99 E-value=5.9e-11 Score=119.27 Aligned_cols=346 Identities=18% Similarity=0.186 Sum_probs=175.9
Q ss_pred CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhccCc-ceeeeecchhhhhccCCccccCCCCCCcHHHHHHHHHhc
Q 012979 2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVR-SINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRN 80 (452)
Q Consensus 2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~~~-sl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 80 (452)
+-.||.|++.+|+|+| |+|...+++++|+-|.-+..+.- .-++.+..+... .+ ..+|.+++.|
T Consensus 72 ~~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD---v~------------g~VV~~~~~R 135 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD---VD------------GGVVENMISR 135 (483)
T ss_pred cccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccccceeeehhcchhc---CC------------CcceehHhhh
Confidence 3479999999999999 79999999999999999876531 122221111000 00 1257778877
Q ss_pred C-CCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccceecccCCCC
Q 012979 81 S-RHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSL 159 (452)
Q Consensus 81 ~-~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L 159 (452)
+ +.++++++.-+..+. ...+.....+|++.
T Consensus 136 cgg~lk~LSlrG~r~v~-------------------------------------------------~sslrt~~~~CpnI 166 (483)
T KOG4341|consen 136 CGGFLKELSLRGCRAVG-------------------------------------------------DSSLRTFASNCPNI 166 (483)
T ss_pred hccccccccccccccCC-------------------------------------------------cchhhHHhhhCCch
Confidence 5 477777776322111 11222223345555
Q ss_pred cEEEeece-eecCCC---C-CCCCCCceeeeee-EeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeee
Q 012979 160 VELEVKNA-WLSVDN---L-NQMPMLTKLTLEF-IRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTV 233 (452)
Q Consensus 160 ~~L~L~~~-~~d~~~---l-~~fp~Lr~L~L~~-v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~ 233 (452)
++|.+-++ +++... + ..++.|++|+|.. ..+++.+|.++..+||+|++|++.+|.-. +...++++.-+-
T Consensus 167 ehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi-----~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 167 EHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI-----SGNGVQALQRGC 241 (483)
T ss_pred hhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh-----hcCcchHHhccc
Confidence 55555553 222111 1 3456677777655 66677777777777777777777554322 111111110000
Q ss_pred c-----------CCc----ceEEecCCceeEEEeeeecC--Cceeee----CCccceEEE----eecccccccc-cccCc
Q 012979 234 S-----------NAP----LSLAIYAPNLVKLELRCVKP--KSLVLQ----TPLLHDFCL----SLEVANEIRF-QEFRN 287 (452)
Q Consensus 234 s-----------~~~----~~l~~~aP~Le~L~l~~~~~--~~l~i~----~p~L~~~~l----~i~~~~~~~l-~~~~~ 287 (452)
. ..+ ..+.-+.+-+.++++..+.. +.-++. ...|..+.. .+++.....+ .++.+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 0 000 00111222233333211100 000000 000011000 0111111111 25677
Q ss_pred ccEEEEeecc-c--cccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhhhhhccccCcc
Q 012979 288 LMNLQLESSS-L--SSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRL 364 (452)
Q Consensus 288 L~~L~l~~~~-~--~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~~~~~~~~~~~ 364 (452)
|+.|.+..+. | ..++.+.+.++.|++|.+.-.....+. .+..+-.+||.|+.|.+. +.+.....+.--+
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-----tL~sls~~C~~lr~lsls---hce~itD~gi~~l 393 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-----TLASLSRNCPRLRVLSLS---HCELITDEGIRHL 393 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-----hHhhhccCCchhccCChh---hhhhhhhhhhhhh
Confidence 7777776422 1 122444567888888775433222222 145889999999999984 2111111100000
Q ss_pred c-cccccccceeEEEEEeecCCcchhHHHHHHHhcccccccEEEEeccCCchHHhhhhhcccccCCCcee
Q 012979 365 E-IRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLISSCTVDHPRVR 433 (452)
Q Consensus 365 ~-~~~~~~~lk~lv~~~~~~~~~~~~~fl~~ll~~a~~L~~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (452)
. ...-..++..+.+..-++-.++.++++ ..|+.||++++.=++....+ .|+.-+++-|++.
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l----~~c~~Leri~l~~~q~vtk~----~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHL----SICRNLERIELIDCQDVTKE----AISRFATHLPNIK 455 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHH----hhCcccceeeeechhhhhhh----hhHHHHhhCccce
Confidence 0 111224666666776565456677766 78899999776655554333 6777777877764
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.26 E-value=6.2e-07 Score=64.03 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCK 38 (452)
Q Consensus 3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~ 38 (452)
+.||+||+.+|+++| +.+|.++++.|||+|+.+..
T Consensus 2 ~~LP~Eil~~If~~L-~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 2 SSLPDEILLEIFSYL-DPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHT
T ss_pred hHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHC
Confidence 689999999999999 59999999999999999863
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=97.96 E-value=8e-06 Score=59.48 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=35.8
Q ss_pred ccceeEEEEEeecCCcchhHHHHHHHhcccccccEEEEe
Q 012979 371 KVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLI 409 (452)
Q Consensus 371 ~~lk~lv~~~~~~~~~~~~~fl~~ll~~a~~L~~m~i~~ 409 (452)
+|||.+.++.|.|. +.|++|++||++||++||+|+|.+
T Consensus 14 s~Lk~v~~~~f~g~-~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 14 SHLKFVEIKGFRGE-ENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred heeEEEEEEeeeCc-HHHHHHHHHHHhhhhhhcEEEEEC
Confidence 79999999999995 999999999999999999999963
No 5
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.93 E-value=1.5e-05 Score=54.54 Aligned_cols=32 Identities=47% Similarity=0.645 Sum_probs=30.5
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhh
Q 012979 5 LPQPLILEILSRLTDSADLARCRVVSKTLNSLC 37 (452)
Q Consensus 5 LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~ 37 (452)
||+|++.+|+++|+ .+|+++++.+||+|+.+.
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~ 32 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLI 32 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 79999999999995 899999999999999986
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.78 E-value=9e-06 Score=57.99 Aligned_cols=36 Identities=42% Similarity=0.556 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc
Q 012979 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE 39 (452)
Q Consensus 3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~ 39 (452)
+.||+|++.+|+++|+ .+|+++++.+||+|+.+...
T Consensus 4 ~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 4 SDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred HHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcC
Confidence 5799999999999995 99999999999999998643
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.72 E-value=0.00013 Score=83.99 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=30.4
Q ss_pred ccCcccEEEEeecccc-ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 284 EFRNLMNLQLESSSLS-SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 284 ~~~~L~~L~l~~~~~~-~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
++.+|++|+++...+. .+...+..+++++.|.+.-... .-.++..+..+|+|+.|++...
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~-------~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF-------TGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc-------CCcCChhHhcCCCCCEEECcCC
Confidence 4556666666533221 1122234455666655421110 0113455778888888888654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.70 E-value=1.4e-05 Score=84.18 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=58.7
Q ss_pred cCCceeEEEeeeecCCce----eeeCCccceEEEe---ecccccccccccCcccEEEEee----ccccccccccccCCce
Q 012979 243 YAPNLVKLELRCVKPKSL----VLQTPLLHDFCLS---LEVANEIRFQEFRNLMNLQLES----SSLSSLINTFPFGKTI 311 (452)
Q Consensus 243 ~aP~Le~L~l~~~~~~~l----~i~~p~L~~~~l~---i~~~~~~~l~~~~~L~~L~l~~----~~~~~~~~l~~~~p~l 311 (452)
.+|+|+-|++.......+ ......|+.+.+. |++..+..+.|+.+||+|+++. +.++.....+..+|++
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 567777777653321111 1112234443332 2333455666888999999874 3334334556678999
Q ss_pred eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979 312 KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS 353 (452)
Q Consensus 312 kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~ 353 (452)
++|.+.= ++.+-. +-.-+.-+|+||.|++++++-.
T Consensus 395 rkL~l~g----Nqlk~I---~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 395 RKLRLTG----NQLKSI---PKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hheeecC----ceeeec---chhhhccCcccceecCCCCcce
Confidence 9988631 111111 1255678999999999876443
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.68 E-value=0.00012 Score=84.38 Aligned_cols=188 Identities=20% Similarity=0.077 Sum_probs=87.6
Q ss_pred cccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccccc-ccCc--cccccc
Q 012979 153 SSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGF-RQPK--IHLLHL 226 (452)
Q Consensus 153 ~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~-~~~~--l~~~sL 226 (452)
..++++|+.|+|++..+ . +..+..+++|++|+|.+-.+.... ..-+..+++|++|.|.++.-. ..+. -.+++|
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 34566677777765322 1 234566667777776654443211 112344667777766543211 1111 224566
Q ss_pred cEEEeeecC----CcceEEecCCceeEEEeeeecCCc----eeeeCCccceEEEeeccc---ccccccccCcccEEEEee
Q 012979 227 KSCLWTVSN----APLSLAIYAPNLVKLELRCVKPKS----LVLQTPLLHDFCLSLEVA---NEIRFQEFRNLMNLQLES 295 (452)
Q Consensus 227 r~l~l~~s~----~~~~l~~~aP~Le~L~l~~~~~~~----l~i~~p~L~~~~l~i~~~---~~~~l~~~~~L~~L~l~~ 295 (452)
+++.+.... .+..+. ..++|++|.+....... ..-+.+.|+.+.+.-.+. ....+.++.+|+.|+++.
T Consensus 239 ~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 666443211 111222 45677777764321100 001123344443321110 001234677888888875
Q ss_pred cccc-ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979 296 SSLS-SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP 349 (452)
Q Consensus 296 ~~~~-~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~ 349 (452)
..+. .+...+..+++++.|.+.-.... -.++..+..+++|+.|++..
T Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 318 NNFTGKIPVALTSLPRLQVLQLWSNKFS-------GEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCCCCc-------CcCChHHhCCCCCcEEECCC
Confidence 4432 22233456778888776422110 11234555666666666643
No 10
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=97.67 E-value=4.9e-05 Score=59.26 Aligned_cols=44 Identities=7% Similarity=0.140 Sum_probs=40.3
Q ss_pred ccceeEEEEEeecCCcchhHHHHHHHhcccccccEEEEeccCCch
Q 012979 371 KVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDS 415 (452)
Q Consensus 371 ~~lk~lv~~~~~~~~~~~~~fl~~ll~~a~~L~~m~i~~~~~~~~ 415 (452)
++||++.++.|.| ...|++|+++|++||+.||+|+|..++...+
T Consensus 5 ~~Lk~v~i~~f~g-~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~ 48 (72)
T smart00579 5 SSLEVLEIKGYRG-TEEEKELVKYFLENAPCLKKLTISVETSDDD 48 (72)
T ss_pred heEEEEEEEeccC-cHHHHHHHHHHHhcchhheEEEEEeecCCcc
Confidence 6899999999999 5999999999999999999999999986544
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.19 E-value=0.0012 Score=77.71 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=27.9
Q ss_pred cCCCCcEEEeeceeec--CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccc
Q 012979 155 CCKSLVELEVKNAWLS--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVG 214 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~ 214 (452)
..++|++|+|.+..+. +.+...+++|++|+|.+.... ..+.. ++.+|+||+|+|.+|.
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCS 668 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCC
Confidence 3456666666653221 223455666666666542110 01111 3446666666665553
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.09 E-value=0.00019 Score=71.23 Aligned_cols=85 Identities=32% Similarity=0.291 Sum_probs=51.0
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeecC-------CCCCCC-CCCceeeeeeEeecch---h
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSV-------DNLNQM-PMLTKLTLEFIRLEDE---D 194 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~-------~~l~~f-p~Lr~L~L~~v~i~~~---~ 194 (452)
...+++|++++..... ..+..+...... ++|++|+|.++.+.. ..+..+ ++|++|+|.+..+.+. .
T Consensus 80 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 80 GCGLQELDLSDNALGP--DGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred cCceeEEEccCCCCCh--hHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 5688888886432210 011112222222 568899998743321 123456 8889999988888743 3
Q ss_pred HHHHhccCCcCCeEEEecc
Q 012979 195 LDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 195 L~~ll~~cP~Le~L~L~~~ 213 (452)
+...+..++.|++|.|.++
T Consensus 157 ~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 157 LAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHhCCCcCEEECcCC
Confidence 4455667788999988664
No 13
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.82 E-value=0.00035 Score=77.34 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=86.8
Q ss_pred CCCcEEEeeceeecCCC----C-CCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEe
Q 012979 157 KSLVELEVKNAWLSVDN----L-NQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLW 231 (452)
Q Consensus 157 ~~L~~L~L~~~~~d~~~----l-~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l 231 (452)
.+|+.|+++|...-..+ + ..||+|++|.++++.+..+++..+-+.+|+|..|++.++. +...
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl------------ 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL------------ 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc------------
Confidence 57889999873111122 2 3679999999999999888899999999999999997642 2111
Q ss_pred eecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccc-cccccccCcccEEEEeeccccccccc------
Q 012979 232 TVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVAN-EIRFQEFRNLMNLQLESSSLSSLINT------ 304 (452)
Q Consensus 232 ~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~l------ 304 (452)
..++ +.+|||.|.+..- .++..+ -..+.++.+|+.|+|+-+......+.
T Consensus 189 ------~GIS-~LknLq~L~mrnL-----------------e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYle 244 (699)
T KOG3665|consen 189 ------SGIS-RLKNLQVLSMRNL-----------------EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLE 244 (699)
T ss_pred ------HHHh-ccccHHHHhccCC-----------------CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHH
Confidence 1133 5667777765211 111111 12445677888888864221111111
Q ss_pred -cccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEE
Q 012979 305 -FPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL 347 (452)
Q Consensus 305 -~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I 347 (452)
-..+|+|+-|+.. ..+-+.+. +..+++.+|||++.-+
T Consensus 245 c~~~LpeLrfLDcS--gTdi~~~~----le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 245 CGMVLPELRFLDCS--GTDINEEI----LEELLNSHPNLQQIAA 282 (699)
T ss_pred hcccCccccEEecC--CcchhHHH----HHHHHHhCccHhhhhh
Confidence 1236777775532 11122222 3478888888887654
No 14
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00031 Score=71.95 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=40.4
Q ss_pred cccCCCCcEEEeeceee-cC---CC-CCCCCCCceeeeeeEeec---chhHHHHhccCCcCCeEEEecccccccCccccc
Q 012979 153 SSCCKSLVELEVKNAWL-SV---DN-LNQMPMLTKLTLEFIRLE---DEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLL 224 (452)
Q Consensus 153 ~~~c~~L~~L~L~~~~~-d~---~~-l~~fp~Lr~L~L~~v~i~---~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~ 224 (452)
+..|++++.|+|....+ .. .. +..||+|+.|+|+.-++. ++-... ..+.|..|+|.+|+-.+.
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k------ 212 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWK------ 212 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHH------
Confidence 34566666666664211 11 11 245666666666655552 111111 256666666655531111
Q ss_pred cccEEEeeecCCcceEEecCCceeEEEeee
Q 012979 225 HLKSCLWTVSNAPLSLAIYAPNLVKLELRC 254 (452)
Q Consensus 225 sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~ 254 (452)
++ ..+....|+|+.|.+..
T Consensus 213 ----------~V-~~~~~~fPsl~~L~L~~ 231 (505)
T KOG3207|consen 213 ----------DV-QWILLTFPSLEVLYLEA 231 (505)
T ss_pred ----------HH-HHHHHhCCcHHHhhhhc
Confidence 11 12444678888887753
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.70 E-value=0.0008 Score=66.68 Aligned_cols=89 Identities=24% Similarity=0.077 Sum_probs=53.0
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeec--C-CCCCCC---CCCceeeeeeEeecchhHHH--
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS--V-DNLNQM---PMLTKLTLEFIRLEDEDLDK-- 197 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d--~-~~l~~f---p~Lr~L~L~~v~i~~~~L~~-- 197 (452)
.+++++|.+........-..-..++.....+++|+.|+|+++.+. . ..+..+ ++|++|+|.+..+.+..+..
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 356888888632110000000112223335789999999975332 1 122233 55999999998888655544
Q ss_pred -HhccC-CcCCeEEEeccc
Q 012979 198 -VNDCF-PCLQVLNLVGVG 214 (452)
Q Consensus 198 -ll~~c-P~Le~L~L~~~~ 214 (452)
.+..+ |+|+.|.|.+|.
T Consensus 130 ~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHhCCCCceEEEcCCCc
Confidence 34556 999999998764
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.68 E-value=0.0085 Score=70.58 Aligned_cols=187 Identities=17% Similarity=0.113 Sum_probs=94.8
Q ss_pred ccCCCCcEEEeece-ee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccC--ccccccccEE
Q 012979 154 SCCKSLVELEVKNA-WL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQP--KIHLLHLKSC 229 (452)
Q Consensus 154 ~~c~~L~~L~L~~~-~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~--~l~~~sLr~l 229 (452)
..+++|+.|+|++. .+ ..+.+..+++|++|+|.+.... ..+..-+..+++|++|++.+|...... .+.+++|+.+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L 709 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL 709 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEE
Confidence 45788999999863 22 3456777899999998753211 112223455889999999877544332 2456778877
Q ss_pred EeeecCCcceEEecCCceeEEEeeeecCCce--eeeCCccceEEEee---c-------ccccccccccCcccEEEEeecc
Q 012979 230 LWTVSNAPLSLAIYAPNLVKLELRCVKPKSL--VLQTPLLHDFCLSL---E-------VANEIRFQEFRNLMNLQLESSS 297 (452)
Q Consensus 230 ~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l--~i~~p~L~~~~l~i---~-------~~~~~~l~~~~~L~~L~l~~~~ 297 (452)
.+.-......+....++|+.|.+.......+ .+..+.|.++.+.- . ..+.......++|++|+++...
T Consensus 710 ~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 710 NLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred eCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 5432211112222346788888754431111 01122333322210 0 0000111123477777776421
Q ss_pred -ccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979 298 -LSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP 349 (452)
Q Consensus 298 -~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~ 349 (452)
...+...+..+++|+.|.+.- |... .. +|... .+++|++|++.+
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~-C~~L--~~----LP~~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIEN-CINL--ET----LPTGI-NLESLESLDLSG 834 (1153)
T ss_pred CccccChhhhCCCCCCEEECCC-CCCc--Ce----eCCCC-CccccCEEECCC
Confidence 222233345677788877521 1100 01 12222 577888888864
No 17
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.00077 Score=66.18 Aligned_cols=127 Identities=22% Similarity=0.232 Sum_probs=82.9
Q ss_pred cCCceEEEeee-cccccccccccccceecccCCCCcEEEeeceeecCCCC-----CCCCCCceeeeeeEe--ecchhHHH
Q 012979 126 CEELKFLSISD-CWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNL-----NQMPMLTKLTLEFIR--LEDEDLDK 197 (452)
Q Consensus 126 ~~~L~eL~l~~-~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~~~l-----~~fp~Lr~L~L~~v~--i~~~~L~~ 197 (452)
..+|++|.|+- .|. .+..+..+..+|+.|..|+|.+|+.-.+.. ..=++|+.|+|.+.+ +....+.-
T Consensus 233 N~~L~~lnlsm~sG~-----t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGF-----TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred cccceeecccccccc-----chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH
Confidence 57889999872 222 223556667789999999999976533322 234889999998763 34678999
Q ss_pred HhccCCcCCeEEEecccccccCc----cccccccEEEeeec-C-Ccc--eEEecCCceeEEEeeeecC
Q 012979 198 VNDCFPCLQVLNLVGVGGFRQPK----IHLLHLKSCLWTVS-N-APL--SLAIYAPNLVKLELRCVKP 257 (452)
Q Consensus 198 ll~~cP~Le~L~L~~~~g~~~~~----l~~~sLr~l~l~~s-~-~~~--~l~~~aP~Le~L~l~~~~~ 257 (452)
+.+.||+|.+|+|..+....... .+++-|+++.++-+ + .++ .-.-..|+|.+|+..+..+
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 99999999999997654433322 34666777633311 1 111 1123678888888765443
No 18
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.21 E-value=0.0054 Score=38.09 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.7
Q ss_pred CCceeeeeeEeecch-hHHHHhccCC
Q 012979 179 MLTKLTLEFIRLEDE-DLDKVNDCFP 203 (452)
Q Consensus 179 ~Lr~L~L~~v~i~~~-~L~~ll~~cP 203 (452)
+||+|.|..|.+.++ +++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999765 8999999998
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.20 E-value=0.00081 Score=71.21 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=94.2
Q ss_pred hcCCceEEEeeecccccccccccccceecccCCCCcEEEeece---eecCCCCCCCCCCceeeeeeEeec---chhHHHH
Q 012979 125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNA---WLSVDNLNQMPMLTKLTLEFIRLE---DEDLDKV 198 (452)
Q Consensus 125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~---~~d~~~l~~fp~Lr~L~L~~v~i~---~~~L~~l 198 (452)
++.++++|+|....-++.- .--.++...|+.|+|++. -+.+.++.-.+.|++|+|++-.++ ++++..
T Consensus 267 ~l~kme~l~L~~N~l~~vn------~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~- 339 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVN------EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV- 339 (873)
T ss_pred eecccceeecccchhhhhh------cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH-
Confidence 4678888888622111110 111456778999999963 345667888899999999887775 455544
Q ss_pred hccCCcCCeEEEeccc--ccccCc-cccccccEEEe-------eecCCcceEEecCCceeEEEeeeecCCceeeeCCccc
Q 012979 199 NDCFPCLQVLNLVGVG--GFRQPK-IHLLHLKSCLW-------TVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLH 268 (452)
Q Consensus 199 l~~cP~Le~L~L~~~~--g~~~~~-l~~~sLr~l~l-------~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~ 268 (452)
+..||+|+|.... ...... .-+++|+.+.+ ++.+...... ..|+|.+|.+.+.+.
T Consensus 340 ---L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~-gl~~LrkL~l~gNql----------- 404 (873)
T KOG4194|consen 340 ---LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN-GLPSLRKLRLTGNQL----------- 404 (873)
T ss_pred ---HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc-cchhhhheeecCcee-----------
Confidence 6778999985321 011111 12344444411 1122222222 467777777643321
Q ss_pred eEEEeecccccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEec
Q 012979 269 DFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELL 319 (452)
Q Consensus 269 ~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~ 319 (452)
...++--+.|+.+||+|++++..+.++ ...+..+ .+|+|.+...
T Consensus 405 ------k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 405 ------KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred ------eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 112334667889999999986554432 2223333 7888877643
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.78 E-value=0.0028 Score=58.34 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=2.9
Q ss_pred CCCCCCCCceeeeee
Q 012979 173 NLNQMPMLTKLTLEF 187 (452)
Q Consensus 173 ~l~~fp~Lr~L~L~~ 187 (452)
++..+++|++|.|.+
T Consensus 59 ~l~~L~~L~~L~L~~ 73 (175)
T PF14580_consen 59 GLPGLPRLKTLDLSN 73 (175)
T ss_dssp T----TT--EEE--S
T ss_pred CccChhhhhhcccCC
Confidence 333444444444443
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.55 E-value=0.0035 Score=57.66 Aligned_cols=112 Identities=25% Similarity=0.303 Sum_probs=47.6
Q ss_pred hcchhhcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCC-CC-CCCCCCceeeeeeEeecc-hhH
Q 012979 120 NWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVD-NL-NQMPMLTKLTLEFIRLED-EDL 195 (452)
Q Consensus 120 ~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~-~l-~~fp~Lr~L~L~~v~i~~-~~L 195 (452)
..+......++.|++++..-. .++-+ ..++.|++|+|.+..+ +.. ++ ..||+|++|.|.+-.|.+ .++
T Consensus 35 e~L~~~l~~L~~L~Ls~N~I~-------~l~~l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l 106 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQIT-------KLEGL-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNEL 106 (175)
T ss_dssp -S--TT-TT--EEE-TTS--S---------TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCC
T ss_pred cchhhhhcCCCEEECCCCCCc-------cccCc-cChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHh
Confidence 345445678899998754221 12221 2467899999997444 332 23 368999999999888876 667
Q ss_pred HHHhccCCcCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeee
Q 012979 196 DKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCV 255 (452)
Q Consensus 196 ~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~ 255 (452)
.. ++.||.|+.|+|.|+.-.... +.-..+.-..|+|+.|+....
T Consensus 107 ~~-L~~l~~L~~L~L~~NPv~~~~---------------~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 107 EP-LSSLPKLRVLSLEGNPVCEKK---------------NYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp GG-GGG-TT--EEE-TT-GGGGST---------------THHHHHHHH-TT-SEETTEET
T ss_pred HH-HHcCCCcceeeccCCcccchh---------------hHHHHHHHHcChhheeCCEEc
Confidence 66 588999999999764322111 111124447788888887543
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.22 E-value=0.0068 Score=60.75 Aligned_cols=40 Identities=25% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCCCCCCceeeeeeEeec---chhHHHHhccCCcCCeEEEecc
Q 012979 174 LNQMPMLTKLTLEFIRLE---DEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 174 l~~fp~Lr~L~L~~v~i~---~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
+...|+|++|+|+.-.+. .+.|..+|+.|..||+|-|..|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 456677778888776664 3678899999999999999765
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.13 E-value=0.016 Score=43.18 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=29.1
Q ss_pred CCcEEEeece---eecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979 158 SLVELEVKNA---WLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 158 ~L~~L~L~~~---~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
+|++|+|.+. .++...+..+++|++|+|.+-.+..-.- ..+..+|.|++|.+.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcC
Confidence 4666666653 2223345666777777776655531110 1234477777777654
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.0058 Score=62.87 Aligned_cols=124 Identities=19% Similarity=0.143 Sum_probs=77.1
Q ss_pred hcCCceEEEee-e-cccccccccccccceecccCCCCcEEEeec-eeecC---CCCCCCCCCceeeeeeEeecchhHHHH
Q 012979 125 VCEELKFLSIS-D-CWFQSCWRKSEVLAFISSCCKSLVELEVKN-AWLSV---DNLNQMPMLTKLTLEFIRLEDEDLDKV 198 (452)
Q Consensus 125 ~~~~L~eL~l~-~-~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~-~~~d~---~~l~~fp~Lr~L~L~~v~i~~~~L~~l 198 (452)
.+..+++|+|+ | .+. | ..+--+..-.++|+.|.|+. .+..+ ..-..++|||.|.|+...++-.++..+
T Consensus 144 ~~~~v~~LdLS~NL~~n---w---~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~ 217 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHN---W---FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWI 217 (505)
T ss_pred hCCcceeecchhhhHHh---H---HHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHH
Confidence 45677888886 3 211 1 11223344678999999984 33222 123478999999999999999999999
Q ss_pred hccCCcCCeEEEecccccc---cCccccccccEEEeee----cCCcceEEecCCceeEEEeee
Q 012979 199 NDCFPCLQVLNLVGVGGFR---QPKIHLLHLKSCLWTV----SNAPLSLAIYAPNLVKLELRC 254 (452)
Q Consensus 199 l~~cP~Le~L~L~~~~g~~---~~~l~~~sLr~l~l~~----s~~~~~l~~~aP~Le~L~l~~ 254 (452)
+..||.||.|.|.+..+.. ...=.++.|+.|.+.- +-..-...-+.|+|.-|.+..
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 9999999999998763321 1112245555552221 101112333566777766643
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.38 E-value=0.0024 Score=58.21 Aligned_cols=152 Identities=17% Similarity=0.153 Sum_probs=87.6
Q ss_pred ccCCCCcEEEeec-ee-ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEe
Q 012979 154 SCCKSLVELEVKN-AW-LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLW 231 (452)
Q Consensus 154 ~~c~~L~~L~L~~-~~-~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l 231 (452)
++....++|.|+. .. .-+|.+..+.+|+.|++..-.|++ |---++++|.|.+|++.-. +.
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmn----rl------------ 91 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMN----RL------------ 91 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchh----hh------------
Confidence 3556788888885 32 235678889999999998766653 2223466899999998421 11
Q ss_pred eecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccccccccccccCCce
Q 012979 232 TVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTI 311 (452)
Q Consensus 232 ~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~l 311 (452)
...+..+. ..|-||.|++.......-. . | =.+..+..|+.|+++..+|+-+-.-+...+++
T Consensus 92 --~~lprgfg-s~p~levldltynnl~e~~--l-------------p-gnff~m~tlralyl~dndfe~lp~dvg~lt~l 152 (264)
T KOG0617|consen 92 --NILPRGFG-SFPALEVLDLTYNNLNENS--L-------------P-GNFFYMTTLRALYLGDNDFEILPPDVGKLTNL 152 (264)
T ss_pred --hcCccccC-CCchhhhhhcccccccccc--C-------------C-cchhHHHHHHHHHhcCCCcccCChhhhhhcce
Confidence 11222344 6688999998543221000 0 0 02233456667778877776544444555566
Q ss_pred eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 312 KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 312 kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
+.|.+.-. +. +.+|.=++.+..|++|||.++
T Consensus 153 qil~lrdn------dl--l~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 153 QILSLRDN------DL--LSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred eEEeeccC------ch--hhCcHHHHHHHHHHHHhcccc
Confidence 66554211 11 224444555667777887664
No 26
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.32 E-value=0.035 Score=57.98 Aligned_cols=62 Identities=29% Similarity=0.432 Sum_probs=31.0
Q ss_pred cccCCCCcEEEeecee-ecCCCC----CCCCCCceeeeeeEe-ecchhHHHHhccCCcCCeEEEeccc
Q 012979 153 SSCCKSLVELEVKNAW-LSVDNL----NQMPMLTKLTLEFIR-LEDEDLDKVNDCFPCLQVLNLVGVG 214 (452)
Q Consensus 153 ~~~c~~L~~L~L~~~~-~d~~~l----~~fp~Lr~L~L~~v~-i~~~~L~~ll~~cP~Le~L~L~~~~ 214 (452)
...|+.|+.|+|.++. +...++ ..+|+|++|.+.... ++++.+..+...||+|++|+|.+|.
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3345556666655532 211111 125566666554333 5566666666666666666665543
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.79 E-value=0.022 Score=58.48 Aligned_cols=58 Identities=10% Similarity=0.249 Sum_probs=28.9
Q ss_pred cCcccEEEEeeccc--cccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEE
Q 012979 285 FRNLMNLQLESSSL--SSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL 347 (452)
Q Consensus 285 ~~~L~~L~l~~~~~--~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I 347 (452)
...|+.|++.+... +...+-++.|+++|++.+ +++..-.. .....|-.++||++....
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l-~~~q~vtk----~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIEL-IDCQDVTK----EAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeee-echhhhhh----hhhHHHHhhCccceehhh
Confidence 34555666654222 223344566777777544 33321000 112366777777776655
No 28
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.71 E-value=0.026 Score=59.03 Aligned_cols=86 Identities=26% Similarity=0.327 Sum_probs=61.2
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeec-e-ee-cCC-----CCCCCCCCceeeeeeEe-ecchhHH
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKN-A-WL-SVD-----NLNQMPMLTKLTLEFIR-LEDEDLD 196 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~-~-~~-d~~-----~l~~fp~Lr~L~L~~v~-i~~~~L~ 196 (452)
.+.+++|.+...+.. ....+..+...|+.|+.|++++ + .+ +.+ -...+++|+.|+|.+.. ++|..+.
T Consensus 187 ~~~L~~l~l~~~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKI----TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccC----ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 577888877644321 1112445566899999999986 2 11 111 12456999999998888 8999999
Q ss_pred HHhccCCcCCeEEEecccc
Q 012979 197 KVNDCFPCLQVLNLVGVGG 215 (452)
Q Consensus 197 ~ll~~cP~Le~L~L~~~~g 215 (452)
.+...||+||+|.+.+|..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSN 281 (482)
T ss_pred HHHhhCCCcceEccCCCCc
Confidence 9999999999999866653
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.62 E-value=0.042 Score=55.20 Aligned_cols=79 Identities=25% Similarity=0.201 Sum_probs=48.1
Q ss_pred CCCCCCceeeeeeEeecch---hHHHHhccCCcCCeEEEecccccccCc----c---ccccccEEEeeec---C-----C
Q 012979 175 NQMPMLTKLTLEFIRLEDE---DLDKVNDCFPCLQVLNLVGVGGFRQPK----I---HLLHLKSCLWTVS---N-----A 236 (452)
Q Consensus 175 ~~fp~Lr~L~L~~v~i~~~---~L~~ll~~cP~Le~L~L~~~~g~~~~~----l---~~~sLr~l~l~~s---~-----~ 236 (452)
...|.|+...+.+..|.++ .+.--+..||+|+.|+|..+.-..... . ..++||.+.++-+ + .
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 3458899999988888643 344556789999999996431111111 1 1345666644422 1 1
Q ss_pred cceEEecCCceeEEEee
Q 012979 237 PLSLAIYAPNLVKLELR 253 (452)
Q Consensus 237 ~~~l~~~aP~Le~L~l~ 253 (452)
...+...+|+|+.|.+.
T Consensus 262 ~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELA 278 (382)
T ss_pred HHHHhccCCCCceeccC
Confidence 22355568999999874
No 30
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.52 E-value=0.12 Score=53.14 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCK 38 (452)
Q Consensus 3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~ 38 (452)
+.||+|||..|.++|+..-|..|.+.||+.||....
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 579999999999999988999999999999999854
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.23 E-value=0.13 Score=51.53 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=32.2
Q ss_pred CCCc----HHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979 3 EHLP----QPLILEILSRLTDSADLARCRVVSKTLNSLCK 38 (452)
Q Consensus 3 s~LP----d~lL~~ILS~L~~~kD~arts~lSkrWr~l~~ 38 (452)
+.|| |+|..+|||+| |+.++++|-.+||+|+++-.
T Consensus 76 ~~lP~~gl~hi~e~ilsyl-d~~sLc~celv~k~W~r~l~ 114 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYL-DALSLCACELVCKEWKRVLS 114 (499)
T ss_pred HhcccccHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHhc
Confidence 5789 99999999999 79999999999999998753
No 32
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=91.99 E-value=0.0057 Score=65.49 Aligned_cols=78 Identities=27% Similarity=0.253 Sum_probs=47.2
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeece--eec--CCCCCCCCCCceeeeeeEeec--chhHHHHh
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNA--WLS--VDNLNQMPMLTKLTLEFIRLE--DEDLDKVN 199 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~--~~d--~~~l~~fp~Lr~L~L~~v~i~--~~~L~~ll 199 (452)
...||.|+|++.+- ..+.. --||. ..+|.+|++++. ..+ |+.+..+.||+.++|++-.+. ++++-.
T Consensus 172 L~~LqtL~Ls~NPL-~hfQL-rQLPs----mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~-- 243 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPL-NHFQL-RQLPS----MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK-- 243 (1255)
T ss_pred HhhhhhhhcCCChh-hHHHH-hcCcc----chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhh--
Confidence 46688888874311 00000 11333 346888888872 232 456778888888888776553 666655
Q ss_pred ccCCcCCeEEEecc
Q 012979 200 DCFPCLQVLNLVGV 213 (452)
Q Consensus 200 ~~cP~Le~L~L~~~ 213 (452)
.++|..|+|.++
T Consensus 244 --l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 244 --LRNLRRLNLSGN 255 (1255)
T ss_pred --hhhhheeccCcC
Confidence 678888888653
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.90 E-value=0.068 Score=59.47 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=74.3
Q ss_pred hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeecCCC----CCCCCCCceeeeeeEeecchhHHHHhc
Q 012979 125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDN----LNQMPMLTKLTLEFIRLEDEDLDKVND 200 (452)
Q Consensus 125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~~~----l~~fp~Lr~L~L~~v~i~~~~L~~ll~ 200 (452)
....||+|++.- .+. +.. .-...++..+++|++|.+.|...+..+ ...||+|++|+++++.+++- .-++
T Consensus 120 sr~nL~~LdI~G--~~~-~s~-~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS 192 (699)
T KOG3665|consen 120 SRQNLQHLDISG--SEL-FSN-GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGIS 192 (699)
T ss_pred HHHhhhhcCccc--cch-hhc-cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHh
Confidence 457888888851 111 000 112233456789999999984333322 46899999999999877764 3356
Q ss_pred cCCcCCeEEEeccccccc-Cc----cccccccEEEeeecC---C------cceEEecCCceeEEEeeee
Q 012979 201 CFPCLQVLNLVGVGGFRQ-PK----IHLLHLKSCLWTVSN---A------PLSLAIYAPNLVKLELRCV 255 (452)
Q Consensus 201 ~cP~Le~L~L~~~~g~~~-~~----l~~~sLr~l~l~~s~---~------~~~l~~~aP~Le~L~l~~~ 255 (452)
..++||.|.+..-. ... .. -.+++||.|.++.+. . ...-....|+|+.|+..++
T Consensus 193 ~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred ccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 78999999885321 211 11 346778887544321 0 1123345899999997543
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=91.45 E-value=0.13 Score=36.08 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=18.5
Q ss_pred CCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 178 PMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 178 p~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
|+|++|+|.+..|++ +...++.||+|++|++.++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 456666666655552 4343456666666666543
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=91.38 E-value=0.029 Score=62.68 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=58.3
Q ss_pred cccceecccCCCCcEEEeeceeec-CC--CCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc-cc
Q 012979 147 EVLAFISSCCKSLVELEVKNAWLS-VD--NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK-IH 222 (452)
Q Consensus 147 ~~L~~~~~~c~~L~~L~L~~~~~d-~~--~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~-l~ 222 (452)
.+.|.+. +.+.|++|+|.+..+. .| .+.+|+.|++|.|++-++..=+ .=++.|+.|++|...+..-.--|. ..
T Consensus 374 ~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp--~tva~~~~L~tL~ahsN~l~~fPe~~~ 450 (1081)
T KOG0618|consen 374 SCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP--DTVANLGRLHTLRAHSNQLLSFPELAQ 450 (1081)
T ss_pred cchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh--HHHHhhhhhHHHhhcCCceeechhhhh
Confidence 4445444 4567888888764332 22 3567777888887776665322 113457778877775433222333 33
Q ss_pred cccccEEEeeec---CCcceEEecCCceeEEEeeee
Q 012979 223 LLHLKSCLWTVS---NAPLSLAIYAPNLVKLELRCV 255 (452)
Q Consensus 223 ~~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~~ 255 (452)
++.|+++.++-. .+...-....|+|++|++.+.
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 677777743321 111112223368888888653
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=91.22 E-value=0.67 Score=52.22 Aligned_cols=12 Identities=8% Similarity=-0.083 Sum_probs=6.2
Q ss_pred CCCceeeeeeEe
Q 012979 178 PMLTKLTLEFIR 189 (452)
Q Consensus 178 p~Lr~L~L~~v~ 189 (452)
++|++|+|.+-.
T Consensus 220 ~nL~~L~Ls~N~ 231 (754)
T PRK15370 220 GNIKTLYANSNQ 231 (754)
T ss_pred cCCCEEECCCCc
Confidence 455555555433
No 37
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.18 E-value=0.26 Score=46.28 Aligned_cols=83 Identities=25% Similarity=0.292 Sum_probs=55.2
Q ss_pred cCCCCcEEEeec-e--eecCCCC-CCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEecccccccCccccccccEE
Q 012979 155 CCKSLVELEVKN-A--WLSVDNL-NQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSC 229 (452)
Q Consensus 155 ~c~~L~~L~L~~-~--~~d~~~l-~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l 229 (452)
..+.|.+|.|++ . .+++ .+ ..+|+|++|.|.+-.+.. .+|+. |+.||.|++|.+.|..-....
T Consensus 62 ~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~---------- 129 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKK---------- 129 (233)
T ss_pred CccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhccc----------
Confidence 356789999996 2 3333 44 466999999998877764 67777 588999999999874311111
Q ss_pred EeeecCCcceEEecCCceeEEEeee
Q 012979 230 LWTVSNAPLSLAIYAPNLVKLELRC 254 (452)
Q Consensus 230 ~l~~s~~~~~l~~~aP~Le~L~l~~ 254 (452)
+.-+-+.=..|+|+.|+...
T Consensus 130 -----~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 130 -----NYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred -----CceeEEEEecCcceEeehhh
Confidence 11122333678899998753
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=90.89 E-value=0.61 Score=52.54 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=23.6
Q ss_pred CCCcEEEeeceeec-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979 157 KSLVELEVKNAWLS-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 157 ~~L~~L~L~~~~~d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
++|++|+|.+..+. .+. .-+++|+.|+|.+..+.. +..-+ ..+|+.|+|.+
T Consensus 220 ~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~ 271 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPA-TLPDTIQEMELSINRITE--LPERL--PSALQSLDLFH 271 (754)
T ss_pred cCCCEEECCCCccccCCh-hhhccccEEECcCCccCc--CChhH--hCCCCEEECcC
Confidence 35666666653221 111 122466667666655441 11101 23567777643
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=90.85 E-value=0.27 Score=36.49 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=36.5
Q ss_pred CceEEEeeecccccccccccccce-ecccCCCCcEEEeece---eecCCCCCCCCCCceeeeee
Q 012979 128 ELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNA---WLSVDNLNQMPMLTKLTLEF 187 (452)
Q Consensus 128 ~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~---~~d~~~l~~fp~Lr~L~L~~ 187 (452)
.|++|++++..- ..+|. ...++++|++|+|++. .+++..+..+|+|++|+|.+
T Consensus 2 ~L~~L~l~~n~l-------~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNNKL-------TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSSTE-------SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCCCC-------CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 577888864311 12232 2346899999999963 33455688999999999975
No 40
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.56 E-value=0.022 Score=55.67 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=44.5
Q ss_pred cccccCcccEEEEeecccccc--ccccccCCceeEEEEEe-ccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979 281 RFQEFRNLMNLQLESSSLSSL--INTFPFGKTIKKLKVEL-LKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP 349 (452)
Q Consensus 281 ~l~~~~~L~~L~l~~~~~~~~--~~l~~~~p~lkkL~L~~-~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~ 349 (452)
.+..|.+|+||+|.-..+..+ +..+...|+|+.|.|.- ||....+.-+. ..+|+-+|||++|+=.+
T Consensus 58 pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR---~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 58 PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR---RKVLRVLPNLKKLDNVP 126 (388)
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH---HHHHHHcccchhccCcc
Confidence 455799999999975444433 34457899999999864 34222111111 37899999999999544
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=89.45 E-value=0.17 Score=35.41 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=19.6
Q ss_pred CCcEEEeeceee-cCCC-CCCCCCCceeeeeeEeec
Q 012979 158 SLVELEVKNAWL-SVDN-LNQMPMLTKLTLEFIRLE 191 (452)
Q Consensus 158 ~L~~L~L~~~~~-d~~~-l~~fp~Lr~L~L~~v~i~ 191 (452)
+|++|+|.+.-+ +.++ +..||+|++|+|.+-.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 566677765322 3344 667777777777665554
No 42
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=89.14 E-value=2.6 Score=47.71 Aligned_cols=20 Identities=5% Similarity=-0.032 Sum_probs=13.1
Q ss_pred hHHhhcCCCccEEEEccCch
Q 012979 333 GVLFDVFPNLSSLTLGPRAW 352 (452)
Q Consensus 333 ~~lL~~~PnL~~L~I~~~~~ 352 (452)
|.-+..+++|+.|++.++.+
T Consensus 438 P~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ChHHhhccCCCeEECCCCCC
Confidence 44455677888888776544
No 43
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=88.71 E-value=0.023 Score=61.04 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=28.1
Q ss_pred cccCCCCcEEEeeceeecC-C--CCCCCCCCceeeeeeEeec--chhHHHHhccCCcCCeEEEec
Q 012979 153 SSCCKSLVELEVKNAWLSV-D--NLNQMPMLTKLTLEFIRLE--DEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 153 ~~~c~~L~~L~L~~~~~d~-~--~l~~fp~Lr~L~L~~v~i~--~~~L~~ll~~cP~Le~L~L~~ 212 (452)
+...+++-+|.|++..+++ | -+.++.-|-+|+|+.-+++ +.-+.. +.+|++|.|.+
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR----L~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR----LSMLQTLKLSN 182 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHH----HhhhhhhhcCC
Confidence 4455666666666544432 1 1234444555666554443 333333 44566666643
No 44
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=88.45 E-value=1 Score=50.77 Aligned_cols=88 Identities=20% Similarity=0.137 Sum_probs=40.1
Q ss_pred CCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeeecCC
Q 012979 158 SLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNA 236 (452)
Q Consensus 158 ~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~ 236 (452)
+|+.|+|.+..+ ..|. ..|+|++|+|.+-.++. +.. ..+.|++|.|.++.-...+. ...+|+.+.+.....
T Consensus 223 ~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N~L 294 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQL 294 (788)
T ss_pred CCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeeccCCchhhhhh-chhhcCEEECcCCcc
Confidence 567777765222 1221 24677777776654442 111 14567777765432111111 123455443221111
Q ss_pred cceEEecCCceeEEEeee
Q 012979 237 PLSLAIYAPNLVKLELRC 254 (452)
Q Consensus 237 ~~~l~~~aP~Le~L~l~~ 254 (452)
..+-...|+|++|++..
T Consensus 295 -t~LP~~p~~L~~LdLS~ 311 (788)
T PRK15387 295 -TSLPVLPPGLQELSVSD 311 (788)
T ss_pred -ccccccccccceeECCC
Confidence 11222346777777754
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=87.06 E-value=0.3 Score=55.89 Aligned_cols=76 Identities=21% Similarity=0.216 Sum_probs=54.1
Q ss_pred cCCCCcEEEeecee-e-c-CCCCCCCCCCceeeeeeEeec--chhHHHHhccCCcCCeEEEeccccccc-Cc--cccccc
Q 012979 155 CCKSLVELEVKNAW-L-S-VDNLNQMPMLTKLTLEFIRLE--DEDLDKVNDCFPCLQVLNLVGVGGFRQ-PK--IHLLHL 226 (452)
Q Consensus 155 ~c~~L~~L~L~~~~-~-d-~~~l~~fp~Lr~L~L~~v~i~--~~~L~~ll~~cP~Le~L~L~~~~g~~~-~~--l~~~sL 226 (452)
..+.|++|+|.++. + . |..++.+-|||+|+|+++.|. |..|.+ +..|.+|++........ +. ..+++|
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~----Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN----LKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH----HHhhheeccccccccccccchhhhcccc
Confidence 36889999999632 1 2 335788999999999999987 788877 56899999965432211 22 337899
Q ss_pred cEEEeeec
Q 012979 227 KSCLWTVS 234 (452)
Q Consensus 227 r~l~l~~s 234 (452)
|++.+..+
T Consensus 645 r~L~l~~s 652 (889)
T KOG4658|consen 645 RVLRLPRS 652 (889)
T ss_pred cEEEeecc
Confidence 99876655
No 46
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=85.03 E-value=0.88 Score=45.32 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHhcC----CChhHHHHHHHHhHHHHHhhcc---Ccceee
Q 012979 3 EHLPQPLILEILSRL----TDSADLARCRVVSKTLNSLCKE---VRSINL 45 (452)
Q Consensus 3 s~LPd~lL~~ILS~L----~~~kD~arts~lSkrWr~l~~~---~~sl~l 45 (452)
+.||||||..|+... -|.++..++|++||.|+-..++ ||+..+
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 679999999988632 2679999999999999988754 454444
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=84.47 E-value=2 Score=40.44 Aligned_cols=77 Identities=29% Similarity=0.374 Sum_probs=51.8
Q ss_pred CCCcEEEeec-eeecCCCCCCCCCCceeeeeeEeec--chhHHHHhccCCcCCeEEEecccccccCccccccccEEEeee
Q 012979 157 KSLVELEVKN-AWLSVDNLNQMPMLTKLTLEFIRLE--DEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTV 233 (452)
Q Consensus 157 ~~L~~L~L~~-~~~d~~~l~~fp~Lr~L~L~~v~i~--~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~ 233 (452)
.....++|.+ -..+.+.+..++.|.+|.|.+-+|+ +..|..+ .|+|.+|.|.+..-++-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l--------------- 103 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQEL--------------- 103 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhh---------------
Confidence 3566677775 2334456778899999999988886 4666665 89999999976421111
Q ss_pred cCCcceEEecCCceeEEEee
Q 012979 234 SNAPLSLAIYAPNLVKLELR 253 (452)
Q Consensus 234 s~~~~~l~~~aP~Le~L~l~ 253 (452)
.+. ..++ .+|.|++|.+-
T Consensus 104 ~dl-~pLa-~~p~L~~Ltll 121 (233)
T KOG1644|consen 104 GDL-DPLA-SCPKLEYLTLL 121 (233)
T ss_pred hhc-chhc-cCCccceeeec
Confidence 111 1244 78999999873
No 48
>PLN03150 hypothetical protein; Provisional
Probab=82.18 E-value=1.2 Score=49.17 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=28.8
Q ss_pred CcEEEeeceeec---CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 159 LVELEVKNAWLS---VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 159 L~~L~L~~~~~d---~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
++.|+|.+..+. ++.+..+++|++|+|.+-.+.+ .+..-+..++.|+.|+|.++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYN 476 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCC
Confidence 556666652221 2335566777777776554432 12222345677777777544
No 49
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=77.07 E-value=0.73 Score=52.00 Aligned_cols=66 Identities=27% Similarity=0.305 Sum_probs=49.6
Q ss_pred ccceecccCCCCcEEEeec-eeecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccc
Q 012979 148 VLAFISSCCKSLVELEVKN-AWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVG 214 (452)
Q Consensus 148 ~L~~~~~~c~~L~~L~L~~-~~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~ 214 (452)
.||...-+|+.|++|..-+ ....+|.+..+|.|+.++|++-.++.-.+...+.. |+|++|+|.|..
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 3555556788888888875 44456678899999999999988877666664433 899999998753
No 50
>PLN03150 hypothetical protein; Provisional
Probab=73.28 E-value=3.6 Score=45.42 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=54.1
Q ss_pred ceEEEeeecccccccccccccceecccCCCCcEEEeeceee--c-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcC
Q 012979 129 LKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL--S-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCL 205 (452)
Q Consensus 129 L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~--d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~L 205 (452)
++.|.|.+... ...+|.....+++|+.|+|++..+ . ++.+..+++|++|+|.+-.+.+.. ..-+..+++|
T Consensus 420 v~~L~L~~n~L------~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGL------RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSL 492 (623)
T ss_pred EEEEECCCCCc------cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCC
Confidence 66777764321 223454455789999999997433 2 235789999999999987776432 2234679999
Q ss_pred CeEEEecc
Q 012979 206 QVLNLVGV 213 (452)
Q Consensus 206 e~L~L~~~ 213 (452)
+.|+|.++
T Consensus 493 ~~L~Ls~N 500 (623)
T PLN03150 493 RILNLNGN 500 (623)
T ss_pred CEEECcCC
Confidence 99999765
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=73.23 E-value=9.2 Score=40.06 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=6.9
Q ss_pred CcCCeEEEecc
Q 012979 203 PCLQVLNLVGV 213 (452)
Q Consensus 203 P~Le~L~L~~~ 213 (452)
++|++|.|.+|
T Consensus 94 ~nLe~L~Ls~C 104 (426)
T PRK15386 94 EGLEKLTVCHC 104 (426)
T ss_pred hhhhheEccCc
Confidence 46677777554
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=72.15 E-value=0.56 Score=46.62 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=28.4
Q ss_pred CCCCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEec
Q 012979 172 DNLNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 172 ~~l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~ 212 (452)
.+++++-+|.+|+++.-.|+. +.++. +..+|+||+|.|.+
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTG 408 (490)
T ss_pred hhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcC
Confidence 345677788888888877765 44444 46788888888865
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=71.08 E-value=2.2 Score=41.46 Aligned_cols=83 Identities=24% Similarity=0.256 Sum_probs=52.5
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---c-CCCCCCCCCCceeeeeeEeecc--hhHHHHh
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---S-VDNLNQMPMLTKLTLEFIRLED--EDLDKVN 199 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d-~~~l~~fp~Lr~L~L~~v~i~~--~~L~~ll 199 (452)
...||.|.+++.. .+....+++....|++|++|.|.+..+ . ..++..+++|++|+|.....+. ..=+.+-
T Consensus 64 Lp~LkkL~lsdn~----~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 64 LPKLKKLELSDNY----RRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred cchhhhhcccCCc----ccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 3578889887431 123456777788889999999986433 2 2456788889999887765542 1112232
Q ss_pred ccCCcCCeEEEec
Q 012979 200 DCFPCLQVLNLVG 212 (452)
Q Consensus 200 ~~cP~Le~L~L~~ 212 (452)
.-+|.|..|+=..
T Consensus 140 ~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 140 LLLPSLKYLDGCD 152 (260)
T ss_pred HHhhhhccccccc
Confidence 3366666666533
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=67.65 E-value=2.2 Score=41.51 Aligned_cols=57 Identities=32% Similarity=0.365 Sum_probs=35.3
Q ss_pred CCCcEEEeece-eecCCCCCCCCCCceeeeeeEeec-chhHHHHhccCCcCCeEEEecc
Q 012979 157 KSLVELEVKNA-WLSVDNLNQMPMLTKLTLEFIRLE-DEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 157 ~~L~~L~L~~~-~~d~~~l~~fp~Lr~L~L~~v~i~-~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
..|+.|+..++ ......+..+|+||+|+|+....- ...|..+...||+|.+|+|.++
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 34555555542 222445677888888888765221 2455556666799998888653
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.08 E-value=1.7 Score=43.30 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=35.2
Q ss_pred EEEeeceeecCCC----C-CCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEe
Q 012979 161 ELEVKNAWLSVDN----L-NQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLV 211 (452)
Q Consensus 161 ~L~L~~~~~d~~~----l-~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~ 211 (452)
.|.|-++-+|..+ + ....++++|+|-+-.|.+ +.+..++..+|.|++|+|.
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls 105 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS 105 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc
Confidence 3555555555433 1 244778888888877777 7788888888888888884
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.36 E-value=0.74 Score=45.37 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=30.0
Q ss_pred cCCCCcEEEeeceeec-CCCCCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEe
Q 012979 155 CCKSLVELEVKNAWLS-VDNLNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLV 211 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~d-~~~l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~ 211 (452)
..+.|++|.|+-..+. ...+..+.+|++|.|+.-.|.+ +-|. -|.+.|+|.+|=|.
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELE-YLKNLPSLRTLWLD 96 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHH-HHhcCchhhhHhhc
Confidence 3455666666632232 2334556666666666665554 2332 24566666666664
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=62.63 E-value=4.8 Score=41.32 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=36.9
Q ss_pred CCCcEEEeeceee-cCCCC-CCC-CCCceeeeeeEeecch--hHHHHhccCCcCCeEEEeccc
Q 012979 157 KSLVELEVKNAWL-SVDNL-NQM-PMLTKLTLEFIRLEDE--DLDKVNDCFPCLQVLNLVGVG 214 (452)
Q Consensus 157 ~~L~~L~L~~~~~-d~~~l-~~f-p~Lr~L~L~~v~i~~~--~L~~ll~~cP~Le~L~L~~~~ 214 (452)
+.++.|++.+..+ +.+.. ..+ ++|++|++.+-.+..- .+ ..+|+|+.|++..+.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~----~~l~~L~~L~l~~N~ 174 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL----RNLPNLKNLDLSFND 174 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh----hccccccccccCCch
Confidence 5688888887333 44443 344 3899999988766653 44 449999999997654
No 58
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.98 E-value=2.6 Score=39.73 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=28.4
Q ss_pred CCCCCCCceeeeeeEe-ecchhHHHHhccCCcCCeEEEeccc
Q 012979 174 LNQMPMLTKLTLEFIR-LEDEDLDKVNDCFPCLQVLNLVGVG 214 (452)
Q Consensus 174 l~~fp~Lr~L~L~~v~-i~~~~L~~ll~~cP~Le~L~L~~~~ 214 (452)
+.+++.++.|.+.+.. +.|..|+.+-.-.|+||+|.|.||.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 3456667777765543 3567888777778888888887753
No 59
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=60.92 E-value=6.2 Score=39.50 Aligned_cols=54 Identities=28% Similarity=0.366 Sum_probs=31.7
Q ss_pred CCCCcEEEeece--eecCCC---------CCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEe
Q 012979 156 CKSLVELEVKNA--WLSVDN---------LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLV 211 (452)
Q Consensus 156 c~~L~~L~L~~~--~~d~~~---------l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~ 211 (452)
|..|+-|...+. .+|... +..|.+|+++.++. .+.+.+..+.+.=|-|+++...
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~--~~~~~i~~~~~~kptl~t~~v~ 245 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSA--LSTENIVDIELLKPTLQTICVH 245 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeec--cchhheeceeecCchhheeeee
Confidence 446666666652 223222 23567777776654 3556666666667777777774
No 60
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=58.41 E-value=4.7 Score=24.48 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=12.8
Q ss_pred CCcCCeEEEecccccc
Q 012979 202 FPCLQVLNLVGVGGFR 217 (452)
Q Consensus 202 cP~Le~L~L~~~~g~~ 217 (452)
||.|++|+|.+|..+.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 7999999998876543
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.30 E-value=3.1 Score=41.52 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=59.9
Q ss_pred hhhcCCceEEEee-ecccccccccccccceecccCCCCcEEEeeceee--cCCCC-CCCCCCceeeeeeEeecchhHHHH
Q 012979 123 PWVCEELKFLSIS-DCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL--SVDNL-NQMPMLTKLTLEFIRLEDEDLDKV 198 (452)
Q Consensus 123 ~~~~~~L~eL~l~-~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~--d~~~l-~~fp~Lr~L~L~~v~i~~~~L~~l 198 (452)
...+..++||+|. |- .+-| +...++....+.|+.|.|+...+ +...+ ....+|++|.|.++.++=..++..
T Consensus 67 ~~~~~~v~elDL~~N~--iSdW---seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNL--ISDW---SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HHHhhhhhhhhcccch--hccH---HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh
Confidence 4456788899985 21 0112 23566777889999999995333 22233 356799999999998887777888
Q ss_pred hccCCcCCeEEEe
Q 012979 199 NDCFPCLQVLNLV 211 (452)
Q Consensus 199 l~~cP~Le~L~L~ 211 (452)
+...|+++.|.+.
T Consensus 142 l~~lP~vtelHmS 154 (418)
T KOG2982|consen 142 LDDLPKVTELHMS 154 (418)
T ss_pred hhcchhhhhhhhc
Confidence 8889999999663
No 62
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.27 E-value=4.5 Score=23.97 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=9.5
Q ss_pred CCCceeeeeeEeecchhHHH
Q 012979 178 PMLTKLTLEFIRLEDEDLDK 197 (452)
Q Consensus 178 p~Lr~L~L~~v~i~~~~L~~ 197 (452)
++|++|+|++..|+++.+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45555555555555554443
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.33 E-value=3.8 Score=38.57 Aligned_cols=57 Identities=25% Similarity=0.233 Sum_probs=39.8
Q ss_pred cCCCCcEEEeece-eecCCCC----CCCCCCceeeee-eEeecchhHHHHhccCCcCCeEEEec
Q 012979 155 CCKSLVELEVKNA-WLSVDNL----NQMPMLTKLTLE-FIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 155 ~c~~L~~L~L~~~-~~d~~~l----~~fp~Lr~L~L~-~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
+++.++.|++-++ +.|..++ +.+|+|+.|+|+ |.+|++..|.. |-.+++|.-|.|.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYD 185 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcC
Confidence 4566777777763 4443322 356889999988 77888888877 46788888888743
No 64
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=46.50 E-value=7.4 Score=44.81 Aligned_cols=80 Identities=20% Similarity=0.120 Sum_probs=55.6
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeec--CCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
.+.|+-|+|+.. ..-..||......-+|+-|+|.+..+. |.++++|..|.+|++.++...+.. ..+...++
T Consensus 570 m~~LrVLDLs~~------~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~ 642 (889)
T KOG4658|consen 570 LPLLRVLDLSGN------SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQ 642 (889)
T ss_pred CcceEEEECCCC------CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcc
Confidence 355666666521 012346666666778998999886553 567889999999999987544333 56666799
Q ss_pred cCCeEEEec
Q 012979 204 CLQVLNLVG 212 (452)
Q Consensus 204 ~Le~L~L~~ 212 (452)
+|++|.+.+
T Consensus 643 ~Lr~L~l~~ 651 (889)
T KOG4658|consen 643 SLRVLRLPR 651 (889)
T ss_pred cccEEEeec
Confidence 999999954
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=43.38 E-value=11 Score=39.25 Aligned_cols=55 Identities=31% Similarity=0.442 Sum_probs=34.7
Q ss_pred cCCCCcEEEeeceee-cCCC-CCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEecc
Q 012979 155 CCKSLVELEVKNAWL-SVDN-LNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~-d~~~-l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~~ 213 (452)
.+++|+.|+|.+..+ .... +..+++|++|+|++-.|+. ..+.. ++.|+.|.+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N 150 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGN 150 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhh----ccchhhheeccC
Confidence 346677777775323 3444 6677777777777766654 55544 555777777654
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=42.98 E-value=11 Score=40.81 Aligned_cols=37 Identities=38% Similarity=0.450 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhccC
Q 012979 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEV 40 (452)
Q Consensus 3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~~ 40 (452)
+.||-|+..+|+++|+ .++...++++|+.|+.+....
T Consensus 109 ~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~~ 145 (537)
T KOG0274|consen 109 SLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDDD 145 (537)
T ss_pred hcccchhcccccccCC-HHHhhhhhhhcchhhhhhhcc
Confidence 5699999999999995 999999999999999986543
No 67
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=40.08 E-value=9.8 Score=35.18 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=11.2
Q ss_pred cccccCcccEEEEee
Q 012979 281 RFQEFRNLMNLQLES 295 (452)
Q Consensus 281 ~l~~~~~L~~L~l~~ 295 (452)
.++.+..|+||+|.+
T Consensus 168 eig~lt~lrelhiqg 182 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQG 182 (264)
T ss_pred HHHHHHHHHHHhccc
Confidence 456677888999874
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=37.29 E-value=47 Score=33.02 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=65.0
Q ss_pred HHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccceec
Q 012979 74 LENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFIS 153 (452)
Q Consensus 74 v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~ 153 (452)
+...+..+|+++.++|+- ..+ ...-+..+...+ .....+.||-+.|+|-+++... .+...+
T Consensus 84 Ll~aLlkcp~l~~v~LSD------NAf----------g~~~~e~L~d~i-s~~t~l~HL~l~NnGlGp~aG~--rigkal 144 (388)
T COG5238 84 LLKALLKCPRLQKVDLSD------NAF----------GSEFPEELGDLI-SSSTDLVHLKLNNNGLGPIAGG--RIGKAL 144 (388)
T ss_pred HHHHHhcCCcceeeeccc------ccc----------CcccchHHHHHH-hcCCCceeEEeecCCCCccchh--HHHHHH
Confidence 334455689999999981 222 122233333333 3456788999988755332111 111110
Q ss_pred ---------ccCCCCcEEEee-ceeecCCC-----CCCC-CCCceeeeeeEeecchhHHHH----hccCCcCCeEEEecc
Q 012979 154 ---------SCCKSLVELEVK-NAWLSVDN-----LNQM-PMLTKLTLEFIRLEDEDLDKV----NDCFPCLQVLNLVGV 213 (452)
Q Consensus 154 ---------~~c~~L~~L~L~-~~~~d~~~-----l~~f-p~Lr~L~L~~v~i~~~~L~~l----l~~cP~Le~L~L~~~ 213 (452)
..-+.|++..-+ |.+-+.+. .-.+ .+|+++-+++-.|.++.+..+ +..|.+||.|+|+.+
T Consensus 145 ~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 145 FHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred HHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 123445555544 22222211 1123 478888888888877644433 467888999888643
No 69
>PF13013 F-box-like_2: F-box-like domain
Probab=36.46 E-value=48 Score=28.05 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=22.4
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHhH
Q 012979 3 EHLPQPLILEILSRLTDSADLARCRVVSK 31 (452)
Q Consensus 3 s~LPd~lL~~ILS~L~~~kD~arts~lSk 31 (452)
..||+||+..|+.+-. ..+.-...-.|+
T Consensus 23 ~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 3599999999999995 677766666666
No 70
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=36.15 E-value=6.6 Score=40.78 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 174 LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 174 l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
+.+|.+|++|+|..-.+ ..+--++..|.+|.+|.|.|.
T Consensus 501 l~nm~nL~tLDL~nNdl--q~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDL--QQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhhhhhcceeccCCCch--hhCChhhccccceeEEEecCC
Confidence 45666677777765332 233344455777777777653
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=35.96 E-value=76 Score=33.40 Aligned_cols=19 Identities=16% Similarity=0.086 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCCceEEEEee
Q 012979 72 SILENLVRNSRHLESVSIGV 91 (452)
Q Consensus 72 ~~v~~~l~~~~~l~~L~L~~ 91 (452)
.|+.++-.. ..+++|++..
T Consensus 43 ~a~~r~~~~-~~l~~L~Is~ 61 (426)
T PRK15386 43 EITPQIEEA-RASGRLYIKD 61 (426)
T ss_pred HHHHHHHHh-cCCCEEEeCC
Confidence 467774443 7788888884
No 72
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=31.29 E-value=40 Score=33.16 Aligned_cols=32 Identities=38% Similarity=0.453 Sum_probs=27.6
Q ss_pred CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHH
Q 012979 2 EEHLPQPLILEILSRLTDSADLARCRVVSKTL 33 (452)
Q Consensus 2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrW 33 (452)
+..||.+++.+|+-||+|-+|+..++.+-..-
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl 233 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETL 233 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHH
Confidence 56799999999999999999999988775443
No 73
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=28.97 E-value=4.7 Score=44.81 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=28.5
Q ss_pred CCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979 174 LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 174 l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
+.-+|+|++|+|++-++.+-+ + |..||.|.+|+|..
T Consensus 183 Lqll~ale~LnLshNk~~~v~--~-Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD--N-LRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH--H-HHhccccccccccc
Confidence 456799999999998887654 3 46699999999954
No 74
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=26.26 E-value=11 Score=26.99 Aligned_cols=26 Identities=31% Similarity=0.654 Sum_probs=22.5
Q ss_pred ccccCCCceeeec-ccccCCCcccccc
Q 012979 424 SCTVDHPRVRWRW-GMWKEGTEDTWVT 449 (452)
Q Consensus 424 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ 449 (452)
.|.-..|.+|=+| |-|+|+-+|.|+.
T Consensus 28 ~CPyq~~~~Rs~WLgGWRea~~D~~~g 54 (55)
T COG3130 28 MCPYQTLNQRSQWLGGWREAMADRVVG 54 (55)
T ss_pred cCCCcCchHHHHHHHHHHHHhhhcccc
Confidence 5888888888888 8999999999974
No 75
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=26.19 E-value=6.2 Score=43.91 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=27.6
Q ss_pred cCCCCcEEEeeceeec-CCCCCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEec
Q 012979 155 CCKSLVELEVKNAWLS-VDNLNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~d-~~~l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~ 212 (452)
+|+ |..|.|+|..+. .-++.++.+|+.|+|.+--+.+ +-|.. |..+-.|..|.|.|
T Consensus 231 gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 231 GCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEG 288 (1096)
T ss_pred hhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcC
Confidence 454 555666553332 1345566666666666544443 22222 23344455555554
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=23.37 E-value=24 Score=21.87 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=9.7
Q ss_pred CCCceeeeeeEeecchhHH
Q 012979 178 PMLTKLTLEFIRLEDEDLD 196 (452)
Q Consensus 178 p~Lr~L~L~~v~i~~~~L~ 196 (452)
++|++|+|++-.+.++...
T Consensus 2 ~~L~~LdL~~N~i~~~G~~ 20 (28)
T smart00368 2 PSLRELDLSNNKLGDEGAR 20 (28)
T ss_pred CccCEEECCCCCCCHHHHH
Confidence 3455555555555544433
No 77
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=22.53 E-value=50 Score=34.62 Aligned_cols=98 Identities=24% Similarity=0.272 Sum_probs=48.9
Q ss_pred cccCCCCcEEEeeceee-c-CCCCCCCCCCceeeeeeEeec--chhHHHHhccCCcCCeEEEeccc-ccccCc--ccccc
Q 012979 153 SSCCKSLVELEVKNAWL-S-VDNLNQMPMLTKLTLEFIRLE--DEDLDKVNDCFPCLQVLNLVGVG-GFRQPK--IHLLH 225 (452)
Q Consensus 153 ~~~c~~L~~L~L~~~~~-d-~~~l~~fp~Lr~L~L~~v~i~--~~~L~~ll~~cP~Le~L~L~~~~-g~~~~~--l~~~s 225 (452)
....++|+-|+|++.++ | |..++.+-.|++|+|.+-++. ++.+.. ..-||++...... |.-.+. ..+..
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~----lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYE----LQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhh----HHHHHHHHhccccccccChHHhhhhhh
Confidence 33456788888887554 3 335667777888888766552 333222 1222333221110 000111 11334
Q ss_pred ccEEEee---ecCCcceEEecCCceeEEEeeee
Q 012979 226 LKSCLWT---VSNAPLSLAIYAPNLVKLELRCV 255 (452)
Q Consensus 226 Lr~l~l~---~s~~~~~l~~~aP~Le~L~l~~~ 255 (452)
|..+.+. +-.++..+. +..+|+.|++++.
T Consensus 507 L~tLDL~nNdlq~IPp~Lg-nmtnL~hLeL~gN 538 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPILG-NMTNLRHLELDGN 538 (565)
T ss_pred cceeccCCCchhhCChhhc-cccceeEEEecCC
Confidence 4443222 112344555 7888999998753
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=21.94 E-value=55 Score=17.80 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=6.9
Q ss_pred CcCCeEEEecc
Q 012979 203 PCLQVLNLVGV 213 (452)
Q Consensus 203 P~Le~L~L~~~ 213 (452)
|+|++|+|.+|
T Consensus 1 ~~L~~L~l~~n 11 (17)
T PF13504_consen 1 PNLRTLDLSNN 11 (17)
T ss_dssp TT-SEEEETSS
T ss_pred CccCEEECCCC
Confidence 56777877655
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=20.43 E-value=29 Score=36.13 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=37.1
Q ss_pred ccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEecc
Q 012979 154 SCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~~ 213 (452)
..|.+|+.|+|.+..+ +..++..++.|+.|++.+-.+.. +.+.. +++|+.|.+.++
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n 172 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLES----LKSLKLLDLSYN 172 (414)
T ss_pred hhhhcchheeccccccccccchhhccchhhheeccCcchhccCCcc----chhhhcccCCcc
Confidence 3577888888887544 45677777778888887765543 33333 677777777543
Done!