Query 012979
Match_columns 452
No_of_seqs 197 out of 307
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 19:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.7 2.5E-17 8.5E-22 175.4 12.0 361 3-409 14-412 (592)
2 2p1m_B Transport inhibitor res 99.7 1.5E-17 5.2E-22 176.9 7.6 361 2-409 6-406 (594)
3 2ast_B S-phase kinase-associat 99.6 1.1E-16 3.8E-21 158.4 1.6 163 2-213 9-178 (336)
4 2p1m_B Transport inhibitor res 98.8 2E-08 6.7E-13 106.5 13.4 118 72-213 95-221 (594)
5 3ogk_B Coronatine-insensitive 98.8 1.7E-08 5.7E-13 107.0 11.4 309 73-411 103-447 (592)
6 4fmz_A Internalin; leucine ric 98.7 2.4E-07 8.2E-12 91.5 14.4 204 126-350 65-275 (347)
7 4fcg_A Uncharacterized protein 98.6 1.7E-07 5.7E-12 92.9 12.7 189 126-349 80-286 (328)
8 1ozn_A Reticulon 4 receptor; N 98.5 3.2E-07 1.1E-11 88.3 9.7 197 126-353 31-238 (285)
9 3zyi_A Leucine-rich repeat-con 98.5 4.9E-07 1.7E-11 93.1 11.1 214 127-354 75-304 (452)
10 4fmz_A Internalin; leucine ric 98.4 1E-06 3.6E-11 86.9 11.6 34 282-316 239-272 (347)
11 3zyj_A Leucine-rich repeat-con 98.4 6.8E-07 2.3E-11 91.7 10.3 193 154-354 85-293 (440)
12 2id5_A Lingo-1, leucine rich r 98.4 2.8E-06 9.7E-11 87.7 14.7 65 282-353 268-333 (477)
13 1ogq_A PGIP-2, polygalacturona 98.4 1.8E-06 6.1E-11 84.7 12.3 211 127-350 50-278 (313)
14 3v47_A TOLL-like receptor 5B a 98.4 1.3E-06 4.5E-11 89.4 11.6 60 154-213 100-164 (455)
15 1o6v_A Internalin A; bacterial 98.4 1.9E-06 6.5E-11 89.0 12.6 58 283-350 240-297 (466)
16 3o6n_A APL1; leucine-rich repe 98.4 2.6E-06 8.9E-11 85.7 13.0 160 154-316 114-279 (390)
17 4fcg_A Uncharacterized protein 98.4 1.8E-06 6E-11 85.5 11.3 168 156-350 80-263 (328)
18 3o53_A Protein LRIM1, AGAP0063 98.3 6E-07 2E-11 88.1 7.6 117 125-253 32-152 (317)
19 1fs1_A SKP2 F-BOX, cyclin A/CD 98.3 2.8E-07 9.5E-12 66.5 3.8 36 2-38 9-44 (53)
20 3bz5_A Internalin-J, INLJ; leu 98.3 2.7E-06 9.2E-11 88.2 11.5 155 155-316 83-240 (457)
21 2z80_A TOLL-like receptor 2, v 98.3 1.1E-05 3.8E-10 80.0 15.5 176 126-350 51-232 (353)
22 3oja_A Leucine-rich immune mol 98.3 1.4E-06 4.8E-11 91.1 9.2 117 126-254 33-153 (487)
23 3o6n_A APL1; leucine-rich repe 98.3 4E-06 1.4E-10 84.3 12.0 209 126-350 68-282 (390)
24 3oja_B Anopheles plasmodium-re 98.3 3.9E-06 1.3E-10 89.7 12.5 98 126-230 98-198 (597)
25 1o6v_A Internalin A; bacterial 98.3 9E-06 3.1E-10 83.9 14.8 141 199-350 173-319 (466)
26 2z66_A Variable lymphocyte rec 98.2 8.4E-07 2.9E-11 86.2 5.4 60 154-213 75-136 (306)
27 2id5_A Lingo-1, leucine rich r 98.2 8.1E-06 2.8E-10 84.3 12.9 57 287-350 225-282 (477)
28 1h6u_A Internalin H; cell adhe 98.2 4.4E-06 1.5E-10 81.7 9.9 77 126-213 40-117 (308)
29 4ezg_A Putative uncharacterize 98.2 4.2E-06 1.4E-10 76.2 9.1 149 154-350 41-191 (197)
30 2z62_A TOLL-like receptor 4, v 98.2 4.2E-06 1.4E-10 80.0 9.4 80 127-213 28-110 (276)
31 2ra8_A Uncharacterized protein 98.2 7.7E-07 2.6E-11 89.8 4.1 165 175-350 136-317 (362)
32 1xku_A Decorin; proteoglycan, 98.2 1.2E-05 4.2E-10 78.8 12.7 63 281-351 211-274 (330)
33 2o6q_A Variable lymphocyte rec 98.2 3.6E-06 1.2E-10 80.5 8.6 65 282-353 153-218 (270)
34 3rfs_A Internalin B, repeat mo 98.2 3.7E-06 1.3E-10 80.5 8.5 176 126-352 40-217 (272)
35 3oja_B Anopheles plasmodium-re 98.2 7.7E-06 2.6E-10 87.4 11.6 121 126-253 74-200 (597)
36 2z63_A TOLL-like receptor 4, v 98.2 1.3E-05 4.6E-10 84.1 13.1 228 153-400 301-549 (570)
37 2z80_A TOLL-like receptor 2, v 98.1 1.8E-06 6.2E-11 85.7 6.0 198 126-350 75-287 (353)
38 2z81_A CD282 antigen, TOLL-lik 98.1 4.2E-05 1.4E-09 80.1 16.2 80 127-213 26-108 (549)
39 3bz5_A Internalin-J, INLJ; leu 98.1 1.1E-05 3.7E-10 83.6 11.4 206 126-350 84-296 (457)
40 2ast_B S-phase kinase-associat 98.1 7.7E-07 2.6E-11 87.3 2.4 58 155-213 91-152 (336)
41 3rgz_A Protein brassinosteroid 98.1 9.5E-06 3.2E-10 89.3 11.2 122 126-254 99-232 (768)
42 1h6t_A Internalin B; cell adhe 98.1 6.4E-06 2.2E-10 80.0 8.7 165 126-350 45-210 (291)
43 1xku_A Decorin; proteoglycan, 98.1 1.4E-05 4.6E-10 78.5 11.0 34 283-316 237-270 (330)
44 3zyj_A Leucine-rich repeat-con 98.1 8.2E-06 2.8E-10 83.6 9.7 186 157-350 64-265 (440)
45 3v47_A TOLL-like receptor 5B a 98.1 8.2E-06 2.8E-10 83.4 9.5 101 126-232 53-162 (455)
46 3t6q_A CD180 antigen; protein- 98.1 3E-06 1E-10 90.1 6.1 59 154-213 275-335 (606)
47 3vq2_A TLR4, TOLL-like recepto 98.1 5.5E-06 1.9E-10 88.0 8.0 119 125-254 326-457 (606)
48 2z63_A TOLL-like receptor 4, v 98.1 1.1E-05 3.7E-10 84.8 10.0 209 128-353 305-531 (570)
49 3zyi_A Leucine-rich repeat-con 98.0 1E-05 3.5E-10 83.2 9.4 186 157-350 75-276 (452)
50 3t6q_A CD180 antigen; protein- 98.0 1.9E-05 6.3E-10 83.9 11.5 209 127-350 278-510 (606)
51 3vq2_A TLR4, TOLL-like recepto 98.0 9.3E-06 3.2E-10 86.2 9.1 17 334-350 515-531 (606)
52 1h6u_A Internalin H; cell adhe 98.0 1.7E-05 6E-10 77.4 10.3 166 125-350 61-227 (308)
53 4ezg_A Putative uncharacterize 98.0 5.7E-06 1.9E-10 75.3 6.2 144 127-316 44-188 (197)
54 1ozn_A Reticulon 4 receptor; N 98.0 1.3E-05 4.3E-10 77.0 8.9 170 156-350 31-211 (285)
55 1m9s_A Internalin B; cell inva 98.0 8.3E-06 2.8E-10 87.7 8.1 77 126-213 42-119 (605)
56 2ca6_A RAN GTPase-activating p 98.0 7.5E-07 2.6E-11 89.6 -0.8 88 125-214 30-133 (386)
57 1ziw_A TOLL-like receptor 3; i 98.0 1.2E-05 4.2E-10 86.6 8.5 17 338-354 607-623 (680)
58 2z66_A Variable lymphocyte rec 97.9 1.1E-05 3.9E-10 78.1 7.0 191 127-350 28-233 (306)
59 3j0a_A TOLL-like receptor 5; m 97.9 5.2E-05 1.8E-09 84.3 13.1 61 153-213 93-158 (844)
60 3o53_A Protein LRIM1, AGAP0063 97.9 2.2E-05 7.5E-10 76.8 9.0 229 153-407 30-269 (317)
61 2ft3_A Biglycan; proteoglycan, 97.9 2.1E-05 7.2E-10 77.2 8.6 207 127-351 54-275 (332)
62 2z81_A CD282 antigen, TOLL-lik 97.9 3.9E-05 1.3E-09 80.3 10.8 60 284-351 449-508 (549)
63 2ca6_A RAN GTPase-activating p 97.9 8.4E-06 2.9E-10 81.9 5.4 122 74-213 24-169 (386)
64 4eco_A Uncharacterized protein 97.9 1.8E-05 6.3E-10 85.2 8.2 205 127-348 305-544 (636)
65 1ziw_A TOLL-like receptor 3; i 97.9 4.1E-05 1.4E-09 82.5 10.9 15 199-213 401-415 (680)
66 3rfs_A Internalin B, repeat mo 97.9 1.5E-05 5.1E-10 76.3 6.6 148 125-316 61-212 (272)
67 3m19_A Variable lymphocyte rec 97.9 1.7E-05 5.7E-10 74.9 6.8 153 157-352 35-191 (251)
68 2z7x_B TOLL-like receptor 1, v 97.9 8.2E-05 2.8E-09 77.4 12.5 55 155-213 88-148 (520)
69 4ecn_A Leucine-rich repeat pro 97.9 2.7E-05 9.1E-10 87.2 9.2 206 127-349 548-785 (876)
70 4eco_A Uncharacterized protein 97.9 6.6E-05 2.3E-09 80.8 12.0 127 126-254 205-362 (636)
71 3a79_B TLR6, VLRB.59, TOLL-lik 97.9 0.0002 6.8E-09 75.6 15.5 33 284-316 351-384 (562)
72 1h6t_A Internalin B; cell adhe 97.9 4E-05 1.4E-09 74.3 9.2 77 126-213 67-144 (291)
73 2o6q_A Variable lymphocyte rec 97.8 3.6E-05 1.2E-09 73.4 8.5 167 127-317 37-213 (270)
74 2ft3_A Biglycan; proteoglycan, 97.8 2.9E-05 9.8E-10 76.3 8.0 214 126-352 77-306 (332)
75 3rgz_A Protein brassinosteroid 97.8 5.7E-05 1.9E-09 83.1 10.1 217 118-350 39-279 (768)
76 3oja_A Leucine-rich immune mol 97.8 3.7E-05 1.3E-09 80.2 7.8 181 155-350 32-224 (487)
77 1wwl_A Monocyte differentiatio 97.8 4.7E-05 1.6E-09 74.3 7.9 15 336-350 292-306 (312)
78 1m9s_A Internalin B; cell inva 97.7 3E-05 1E-09 83.3 6.6 78 125-213 63-141 (605)
79 1z7x_W Ribonuclease inhibitor; 97.7 5.7E-06 1.9E-10 84.6 0.9 118 74-213 20-152 (461)
80 2z7x_B TOLL-like receptor 1, v 97.7 0.00018 6.1E-09 74.8 11.8 60 286-352 421-480 (520)
81 4glp_A Monocyte differentiatio 97.7 1.5E-05 5.2E-10 77.6 3.4 59 154-213 114-179 (310)
82 4ecn_A Leucine-rich repeat pro 97.7 0.00015 5.1E-09 81.1 11.8 128 126-255 447-605 (876)
83 1p9a_G Platelet glycoprotein I 97.7 3.2E-05 1.1E-09 75.0 5.6 156 154-354 52-209 (290)
84 3j0a_A TOLL-like receptor 5; m 97.7 0.00011 3.9E-09 81.6 10.7 121 126-255 265-391 (844)
85 1xeu_A Internalin C; cellular 97.7 5.1E-05 1.8E-09 72.4 6.9 56 155-213 39-95 (263)
86 2xwt_C Thyrotropin receptor; s 97.7 0.00025 8.6E-09 66.0 11.5 63 281-350 150-215 (239)
87 1z7x_W Ribonuclease inhibitor; 97.7 2.5E-06 8.6E-11 87.3 -2.6 277 124-410 25-351 (461)
88 2xwt_C Thyrotropin receptor; s 97.7 0.00015 5E-09 67.6 9.5 188 126-349 30-235 (239)
89 1p9a_G Platelet glycoprotein I 97.7 0.0001 3.4E-09 71.4 8.7 148 157-350 31-182 (290)
90 3m19_A Variable lymphocyte rec 97.6 5.5E-05 1.9E-09 71.3 5.7 149 127-317 35-187 (251)
91 1ogq_A PGIP-2, polygalacturona 97.6 0.00013 4.4E-09 71.3 8.5 208 126-350 75-301 (313)
92 3g06_A SSPH2 (leucine-rich rep 97.6 0.0003 1E-08 75.8 11.9 14 337-350 238-251 (622)
93 2ell_A Acidic leucine-rich nuc 97.6 6.6E-05 2.3E-09 66.0 5.6 83 126-214 23-106 (168)
94 3g06_A SSPH2 (leucine-rich rep 97.6 0.00054 1.9E-08 73.8 13.3 19 334-352 278-296 (622)
95 3a79_B TLR6, VLRB.59, TOLL-lik 97.5 0.00029 9.9E-09 74.3 10.9 61 286-353 450-510 (562)
96 2e31_A FBS1, F-box only protei 97.5 3.3E-05 1.1E-09 75.4 2.7 36 2-38 51-87 (297)
97 3e4g_A ATP synthase subunit S, 97.4 9.8E-05 3.4E-09 66.7 4.6 92 147-255 51-149 (176)
98 2je0_A Acidic leucine-rich nuc 97.4 7.7E-05 2.6E-09 64.2 3.5 82 126-213 16-98 (149)
99 2ell_A Acidic leucine-rich nuc 97.4 0.0001 3.6E-09 64.8 4.2 54 157-213 24-81 (168)
100 1wwl_A Monocyte differentiatio 97.4 9.3E-05 3.2E-09 72.1 4.2 81 126-213 94-183 (312)
101 3goz_A Leucine-rich repeat-con 97.3 0.0001 3.5E-09 73.4 3.8 206 128-350 52-294 (362)
102 3e6j_A Variable lymphocyte rec 97.3 0.00037 1.3E-08 64.9 6.9 55 157-212 40-97 (229)
103 1xeu_A Internalin C; cellular 97.3 4.9E-05 1.7E-09 72.6 0.8 160 157-350 19-182 (263)
104 3l2o_B F-box only protein 4; s 97.3 6.5E-05 2.2E-09 73.0 1.6 37 2-39 5-41 (312)
105 2z62_A TOLL-like receptor 4, v 97.3 0.00026 9E-09 67.3 5.7 97 157-254 28-133 (276)
106 3e4g_A ATP synthase subunit S, 97.2 7.4E-05 2.5E-09 67.5 1.4 85 127-218 61-154 (176)
107 2je0_A Acidic leucine-rich nuc 97.2 6.6E-05 2.3E-09 64.7 0.5 54 157-213 17-74 (149)
108 2ra8_A Uncharacterized protein 97.2 0.00044 1.5E-08 69.5 6.2 85 126-211 138-227 (362)
109 2v70_A SLIT-2, SLIT homolog 2 97.1 0.00048 1.6E-08 63.7 6.0 54 158-212 33-90 (220)
110 3cvr_A Invasion plasmid antige 97.1 0.0016 5.3E-08 69.5 10.6 177 126-352 58-242 (571)
111 3goz_A Leucine-rich repeat-con 97.1 0.00014 4.7E-09 72.5 2.3 207 126-350 21-263 (362)
112 2o6s_A Variable lymphocyte rec 97.1 0.0007 2.4E-08 61.5 6.8 57 156-213 27-86 (208)
113 1jl5_A Outer protein YOPM; leu 97.1 0.0013 4.5E-08 67.8 9.5 9 82-90 71-79 (454)
114 1a9n_A U2A', U2A'; complex (nu 97.1 0.00014 4.8E-09 64.7 1.3 55 155-212 17-73 (176)
115 4glp_A Monocyte differentiatio 97.0 0.0006 2E-08 66.2 5.7 183 125-350 115-304 (310)
116 2v9t_B SLIT homolog 2 protein 97.0 0.00083 2.8E-08 62.1 5.8 55 157-212 32-89 (220)
117 1ds9_A Outer arm dynein; leuci 96.9 5.3E-05 1.8E-09 68.8 -2.7 60 152-213 43-103 (198)
118 2xot_A Amphoterin-induced prot 96.9 0.00063 2.2E-08 67.7 4.8 154 157-353 39-202 (361)
119 2o6s_A Variable lymphocyte rec 96.9 0.0008 2.7E-08 61.1 5.0 81 126-213 27-110 (208)
120 1jl5_A Outer protein YOPM; leu 96.8 0.0048 1.7E-07 63.5 10.9 50 287-350 318-367 (454)
121 4ay9_X Follicle-stimulating ho 96.8 0.022 7.6E-07 56.1 15.2 204 127-354 30-259 (350)
122 4g8a_A TOLL-like receptor 4; l 96.8 0.0017 5.9E-08 68.3 7.4 57 155-213 369-430 (635)
123 4g8a_A TOLL-like receptor 4; l 96.7 0.0013 4.3E-08 69.4 5.5 130 127-298 52-185 (635)
124 3e6j_A Variable lymphocyte rec 96.6 0.0021 7.1E-08 59.7 5.7 81 126-213 39-122 (229)
125 2v9t_B SLIT homolog 2 protein 96.6 0.0026 8.8E-08 58.7 5.8 80 127-213 32-114 (220)
126 2ovr_B FBW7, F-BOX/WD repeat p 96.5 0.0011 3.7E-08 66.9 3.2 37 1-38 18-54 (445)
127 2v70_A SLIT-2, SLIT homolog 2 96.5 0.0021 7.1E-08 59.4 4.9 56 155-211 55-113 (220)
128 3cvr_A Invasion plasmid antige 96.5 0.0076 2.6E-07 64.1 9.6 108 126-255 79-190 (571)
129 4ay9_X Follicle-stimulating ho 96.5 0.0073 2.5E-07 59.6 8.8 56 157-212 30-88 (350)
130 1a9n_A U2A', U2A'; complex (nu 96.5 0.0014 4.8E-08 58.1 3.1 80 126-213 18-98 (176)
131 3v7d_B Cell division control p 96.4 0.0014 4.9E-08 66.1 3.4 36 3-39 16-51 (464)
132 1dce_A Protein (RAB geranylger 96.4 0.004 1.4E-07 66.2 6.7 125 178-347 441-567 (567)
133 1p22_A F-BOX/WD-repeat protein 96.3 0.0012 4.2E-08 66.5 2.1 35 3-38 12-50 (435)
134 1io0_A Tropomodulin; LRR prote 96.3 0.0014 5E-08 58.9 2.2 130 66-213 20-161 (185)
135 2xot_A Amphoterin-induced prot 96.2 0.0048 1.6E-07 61.2 5.7 147 160-350 21-173 (361)
136 3sb4_A Hypothetical leucine ri 96.1 0.0067 2.3E-07 59.3 6.4 60 280-347 267-328 (329)
137 3sb4_A Hypothetical leucine ri 96.1 0.029 1E-06 54.6 10.7 64 278-350 242-307 (329)
138 3un9_A NLR family member X1; l 95.6 0.00047 1.6E-08 69.4 -4.6 58 156-213 100-165 (372)
139 1w8a_A SLIT protein; signaling 95.4 0.01 3.5E-07 53.3 3.9 54 158-212 30-87 (192)
140 2wfh_A SLIT homolog 2 protein 95.3 0.017 5.7E-07 52.1 5.0 32 178-211 31-62 (193)
141 1dce_A Protein (RAB geranylger 95.0 0.022 7.4E-07 60.5 5.7 115 127-252 441-567 (567)
142 2wfh_A SLIT homolog 2 protein 94.9 0.037 1.3E-06 49.7 6.3 79 127-213 31-112 (193)
143 2o6r_A Variable lymphocyte rec 94.9 0.023 8E-07 49.9 4.6 34 157-190 28-64 (177)
144 1ds9_A Outer arm dynein; leuci 94.7 0.0084 2.9E-07 54.0 1.3 56 156-212 92-149 (198)
145 2o6r_A Variable lymphocyte rec 94.6 0.042 1.4E-06 48.2 5.6 81 126-213 27-110 (177)
146 4fdw_A Leucine rich hypothetic 94.1 0.19 6.4E-06 50.8 9.9 11 201-211 224-234 (401)
147 4b8c_D Glucose-repressible alc 94.1 0.017 5.7E-07 63.2 2.1 96 155-253 222-324 (727)
148 2r9u_A Variable lymphocyte rec 93.8 0.043 1.5E-06 48.5 4.0 79 127-212 33-114 (174)
149 4fdw_A Leucine rich hypothetic 93.8 0.18 6.2E-06 50.9 9.0 63 279-349 264-332 (401)
150 1w8a_A SLIT protein; signaling 93.7 0.052 1.8E-06 48.5 4.4 57 155-212 52-111 (192)
151 3g39_A Variable lymphocyte rec 93.5 0.061 2.1E-06 47.2 4.3 79 127-212 30-111 (170)
152 4b8c_D Glucose-repressible alc 92.8 0.026 9E-07 61.6 1.1 58 154-213 244-303 (727)
153 3un9_A NLR family member X1; l 92.6 0.019 6.7E-07 57.5 -0.3 137 73-232 91-247 (372)
154 4fs7_A Uncharacterized protein 92.3 0.34 1.2E-05 48.2 8.4 54 154-211 159-216 (394)
155 3g39_A Variable lymphocyte rec 90.4 0.21 7.2E-06 43.6 4.0 56 157-213 30-88 (170)
156 3rw6_A Nuclear RNA export fact 90.0 0.1 3.5E-06 49.9 1.8 56 154-209 193-257 (267)
157 1io0_A Tropomodulin; LRR prote 89.9 0.052 1.8E-06 48.5 -0.4 83 126-210 35-128 (185)
158 2r9u_A Variable lymphocyte rec 89.7 0.26 8.9E-06 43.3 4.1 56 157-213 33-91 (174)
159 4fs7_A Uncharacterized protein 87.2 1.5 5.2E-05 43.4 8.3 35 281-316 338-373 (394)
160 2ifg_A High affinity nerve gro 87.0 0.57 2E-05 45.4 4.9 36 155-190 54-92 (347)
161 2ifg_A High affinity nerve gro 86.5 0.44 1.5E-05 46.2 3.8 81 149-231 24-110 (347)
162 1pgv_A TMD-1, tropomodulin TMD 83.9 0.63 2.2E-05 42.3 3.3 129 66-212 25-166 (197)
163 3rw6_A Nuclear RNA export fact 79.1 0.49 1.7E-05 45.1 0.7 63 149-213 162-230 (267)
164 4gt6_A Cell surface protein; l 72.4 2.9 9.8E-05 41.3 4.3 143 156-350 241-388 (394)
165 4gt6_A Cell surface protein; l 44.5 20 0.00068 35.1 4.7 54 154-211 285-342 (394)
166 1pgv_A TMD-1, tropomodulin TMD 35.1 11 0.00038 33.9 1.0 56 156-211 69-134 (197)
167 4h09_A Hypothetical leucine ri 28.9 33 0.0011 33.1 3.3 54 154-211 260-318 (379)
168 4h09_A Hypothetical leucine ri 22.3 82 0.0028 30.2 4.8 55 154-212 237-295 (379)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=2.5e-17 Score=175.38 Aligned_cols=361 Identities=16% Similarity=0.119 Sum_probs=194.0
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhccCcceeeeecchhhhhccCCccccCCCCCCcHHHHHHHHHhcCC
Q 012979 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRNSR 82 (452)
Q Consensus 3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~~~sl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 82 (452)
+.||||++.+|+++|++++|+++|++|||||++++...+ ..+.... .+.....+++.+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~-~~l~~~~-------------------~~~~~~~~~~~~~~ 73 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETR-EHVTMAL-------------------CYTATPDRLSRRFP 73 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHC-CEEEESC-------------------GGGSCHHHHHHHCT
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccc-cEEEEee-------------------ccccChHHHHHhCC
Confidence 479999999999999559999999999999999964332 1121110 11123455677888
Q ss_pred CceEEEEeeecCcccccccccccccccccCCChhhhhhcch---hhcCCceEEEeeecccccccccccccceecccCCC-
Q 012979 83 HLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLP---WVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKS- 158 (452)
Q Consensus 83 ~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~---~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~- 158 (452)
.+++|+++.++...+.... ..++ .++...|+. ...+.|++|+|++... ....+..+...|+.
T Consensus 74 ~L~~L~L~~~~~~~~~~~~-----~~~~----~~~~~~~l~~l~~~~~~L~~L~L~~~~i-----~~~~~~~l~~~~~~~ 139 (592)
T 3ogk_B 74 NLRSLKLKGKPRAAMFNLI-----PENW----GGYVTPWVTEISNNLRQLKSVHFRRMIV-----SDLDLDRLAKARADD 139 (592)
T ss_dssp TCSEEEEECSCGGGGGTCS-----CTTS----CCBCHHHHHHHHHHCTTCCEEEEESCBC-----CHHHHHHHHHHHGGG
T ss_pred CCeEEEecCCcchhhcccc-----cccc----cccchHHHHHHHhhCCCCCeEEeeccEe-----cHHHHHHHHHhcccc
Confidence 8999999854432211000 0000 112234542 2457788888863311 11122223323444
Q ss_pred CcEEEeecee-ecCCCC----CCCCCCceeeeeeEeecchh---HHHHhccCCcCCeEEEeccccc--ccCc-----ccc
Q 012979 159 LVELEVKNAW-LSVDNL----NQMPMLTKLTLEFIRLEDED---LDKVNDCFPCLQVLNLVGVGGF--RQPK-----IHL 223 (452)
Q Consensus 159 L~~L~L~~~~-~d~~~l----~~fp~Lr~L~L~~v~i~~~~---L~~ll~~cP~Le~L~L~~~~g~--~~~~-----l~~ 223 (452)
|++|+|.++. +...++ ..+|+|++|+|.+..+.+.. +..+...+|.|++|+|.++... .... -.+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 7777777632 221122 25677777777766665443 5566677777777777543211 0001 124
Q ss_pred ccccEEEeeec---CCcceEEecCCceeEEEeeeecCC-------ceeeeCCccceEEEeeccc--ccccccccCcccEE
Q 012979 224 LHLKSCLWTVS---NAPLSLAIYAPNLVKLELRCVKPK-------SLVLQTPLLHDFCLSLEVA--NEIRFQEFRNLMNL 291 (452)
Q Consensus 224 ~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~~~~~-------~l~i~~p~L~~~~l~i~~~--~~~~l~~~~~L~~L 291 (452)
++|+.+.+.-. +.. ......|+|+.|.+...... ......+.|+.+++.-... -...+..+++|++|
T Consensus 220 ~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 56666644321 111 12235677777777532110 0011223444444321000 11134567899999
Q ss_pred EEeecccc--ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEc-cCchhhhh---hccccCccc
Q 012979 292 QLESSSLS--SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLG-PRAWSAVQ---SNFDKGRLE 365 (452)
Q Consensus 292 ~l~~~~~~--~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~-~~~~~~~~---~~~~~~~~~ 365 (452)
+++...+. .+..++..++++++|.+. .. ..+ ..++.+++.+|+|++|+|. +..-..++ ..+...++.
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~-~~~-----~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NV-IGD-----RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GG-GHH-----HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-Cc-cCH-----HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 99864432 223445779999999876 21 111 1245788899999999997 21000000 000000000
Q ss_pred c-ccccccceeEEEEEeecCCcchhHHHHHHHhcccccccEEEEe
Q 012979 366 I-RTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLI 409 (452)
Q Consensus 366 ~-~~~~~~lk~lv~~~~~~~~~~~~~fl~~ll~~a~~L~~m~i~~ 409 (452)
. ....+.|+++.+.. ..-+-+.++.+..+++.|+.+.+..
T Consensus 372 ~l~~~~~~L~~L~l~~----~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYV----SDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHHHCTTCSEEEEEE----SCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HHHhhCccCeEEEeec----CCccHHHHHHHHhhCCCCcEEEEee
Confidence 0 01236788887732 1334456677778899999999974
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1.5e-17 Score=176.93 Aligned_cols=361 Identities=16% Similarity=0.150 Sum_probs=179.7
Q ss_pred CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc-CcceeeeecchhhhhccCCccccCCCCCCcHHHHHHHHHhc
Q 012979 2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE-VRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRN 80 (452)
Q Consensus 2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~-~~sl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 80 (452)
++.||||++.+|+++|++++|+++|+.|||||+++... ++.+.+. ... . . ...+++.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~--~~~------~---------~----~~~~~~~~ 64 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIG--NCY------A---------V----SPATVIRR 64 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEES--STT------S---------S----CHHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeec--ccc------c---------c----CHHHHHhh
Confidence 67899999999999997699999999999999998432 2333331 110 0 0 12245667
Q ss_pred CCCceEEEEeeecCcccccccccccccccccCCChhhhhhcc---hhhcCCceEEEeeecccccccccccccceecccCC
Q 012979 81 SRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWL---PWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCK 157 (452)
Q Consensus 81 ~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL---~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~ 157 (452)
.+.+++|.+..++...+-... ..+ | .+.+..|+ ....+.|++|+|+.... ....+..+...|+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~-----~~~-~---~~~~~~~l~~l~~~~~~L~~L~L~~~~~-----~~~~~~~l~~~~~ 130 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLV-----PDG-W---GGYVYPWIEAMSSSYTWLEEIRLKRMVV-----TDDCLELIAKSFK 130 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCS-----CTT-S---CCBCHHHHHHHHHHCTTCCEEEEESCBC-----CHHHHHHHHHHCT
T ss_pred CCCceEEeccCCCchhhcccc-----ccc-c---cchhhHHHHHHHHhCCCCCeEEeeCcEE-----cHHHHHHHHHhCC
Confidence 788888888854322211100 000 0 01223454 22356777877763211 1122333333567
Q ss_pred CCcEEEeece-eecC---CCC-CCCCCCceeeeeeEeecc---hhHHHHhccCCcCCeEEEecccc-cccCc-----ccc
Q 012979 158 SLVELEVKNA-WLSV---DNL-NQMPMLTKLTLEFIRLED---EDLDKVNDCFPCLQVLNLVGVGG-FRQPK-----IHL 223 (452)
Q Consensus 158 ~L~~L~L~~~-~~d~---~~l-~~fp~Lr~L~L~~v~i~~---~~L~~ll~~cP~Le~L~L~~~~g-~~~~~-----l~~ 223 (452)
+|++|+|.++ .+.. +.+ ..+|+|++|+|.+..+++ ..+..+...||+|++|+|.++.+ ..... -.+
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 7777777754 3321 112 256777777776555543 23455555667777777755431 10000 123
Q ss_pred ccccEEEeeecCC---cceEEecCCceeEEEeeeecCC-------c---eeeeCCccceEEEeecccc--cc--cccccC
Q 012979 224 LHLKSCLWTVSNA---PLSLAIYAPNLVKLELRCVKPK-------S---LVLQTPLLHDFCLSLEVAN--EI--RFQEFR 286 (452)
Q Consensus 224 ~sLr~l~l~~s~~---~~~l~~~aP~Le~L~l~~~~~~-------~---l~i~~p~L~~~~l~i~~~~--~~--~l~~~~ 286 (452)
++|+++.+.-... ...+...+|+|+.|.+...... . ..-+.+.|+.+. .+.+.. .+ .+.+++
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls-~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE-CCBTCCGGGGGGGHHHHT
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc-CCcccchhhHHHHHHhhC
Confidence 5566654321100 0112225567777764321100 0 000112233321 011100 01 122577
Q ss_pred cccEEEEeecccc--ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh-hh-hhccccC
Q 012979 287 NLMNLQLESSSLS--SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS-AV-QSNFDKG 362 (452)
Q Consensus 287 ~L~~L~l~~~~~~--~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~-~~-~~~~~~~ 362 (452)
+|++|+++...+. .+..++..++++++|.+.-. ..+ ..+..+.+.+|+|++|+|....-. .. ...+...
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~-----~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IED-----AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHH-----HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCH-----HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 8889998754432 12334567889999887522 111 123577788999999998331000 00 0000000
Q ss_pred cccc-ccccccceeEEEEEeecCCcchhHHHHHHHhcccccccEEEEe
Q 012979 363 RLEI-RTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLI 409 (452)
Q Consensus 363 ~~~~-~~~~~~lk~lv~~~~~~~~~~~~~fl~~ll~~a~~L~~m~i~~ 409 (452)
++.. ....+.|+++.+... .-+-..+..+..+++.|+.+.+.+
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~----~l~~~~~~~l~~~~~~L~~L~L~~ 406 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCR----QMTNAALITIARNRPNMTRFRLCI 406 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEES----CCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHhchhHHHHHHhcC----CcCHHHHHHHHhhCCCcceeEeec
Confidence 0000 001267888844321 333455667778889999999984
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=1.1e-16 Score=158.42 Aligned_cols=163 Identities=21% Similarity=0.237 Sum_probs=110.4
Q ss_pred CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc---CcceeeeecchhhhhccCCccccCCCCCCcHHHHHHHHH
Q 012979 2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE---VRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLV 78 (452)
Q Consensus 2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~---~~sl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 78 (452)
++.||||++.+|+++|+ .+|+++++.|||+|+.+..+ ++.+++. ... .. ...+.+++
T Consensus 9 ~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~--~~~---------------~~--~~~~~~~~ 68 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLT--GKN---------------LH--PDVTGRLL 68 (336)
T ss_dssp SSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECT--TCB---------------CC--HHHHHHHH
T ss_pred hhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccc--ccc---------------CC--HHHHHhhh
Confidence 58899999999999995 99999999999999999743 4444432 110 01 12333333
Q ss_pred hcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccceecccCCC
Q 012979 79 RNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKS 158 (452)
Q Consensus 79 ~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~ 158 (452)
. +.++.+++... .+ .+. .+. ......|++|++++... ....++.....|++
T Consensus 69 ~--~~l~~L~l~~n------~l-------~~~---~~~------~~~~~~L~~L~L~~~~l-----~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 69 S--QGVIAFRCPRS------FM-------DQP---LAE------HFSPFRVQHMDLSNSVI-----EVSTLHGILSQCSK 119 (336)
T ss_dssp H--TTCSEEECTTC------EE-------CSC---CCS------CCCCBCCCEEECTTCEE-----CHHHHHHHHTTBCC
T ss_pred h--ccceEEEcCCc------cc-------ccc---chh------hccCCCCCEEEccCCCc-----CHHHHHHHHhhCCC
Confidence 2 56777776621 11 000 000 11357889999974321 11225555667899
Q ss_pred CcEEEeeceeec---CCCCCCCCCCceeeeeeE-eecchhHHHHhccCCcCCeEEEecc
Q 012979 159 LVELEVKNAWLS---VDNLNQMPMLTKLTLEFI-RLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 159 L~~L~L~~~~~d---~~~l~~fp~Lr~L~L~~v-~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
|++|+|.++.+. +..+..+++|++|+|.+. .+++..+..++..||+|++|+|.+|
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 999999985442 224677999999999887 6788888888899999999999776
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.83 E-value=2e-08 Score=106.46 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=79.6
Q ss_pred HHHHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccce
Q 012979 72 SILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAF 151 (452)
Q Consensus 72 ~~v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~ 151 (452)
..+..+..+.+.+++|+++.+ .+ + ...+ .-+....+.|++|++.++.. . ....++.
T Consensus 95 ~~l~~l~~~~~~L~~L~L~~~------~~------------~-~~~~-~~l~~~~~~L~~L~L~~~~~---~-~~~~l~~ 150 (594)
T 2p1m_B 95 PWIEAMSSSYTWLEEIRLKRM------VV------------T-DDCL-ELIAKSFKNFKVLVLSSCEG---F-STDGLAA 150 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESC------BC------------C-HHHH-HHHHHHCTTCCEEEEESCEE---E-EHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEeeCc------EE------------c-HHHH-HHHHHhCCCCcEEeCCCcCC---C-CHHHHHH
Confidence 345566667899999999832 11 1 1111 11222467999999975421 1 1223555
Q ss_pred ecccCCCCcEEEeeceeecC-C--CC----CCCCCCceeeeeeEe--ecchhHHHHhccCCcCCeEEEecc
Q 012979 152 ISSCCKSLVELEVKNAWLSV-D--NL----NQMPMLTKLTLEFIR--LEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 152 ~~~~c~~L~~L~L~~~~~d~-~--~l----~~fp~Lr~L~L~~v~--i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
+..+|++|++|+|.++.+.. . .+ ..+++|++|+|.+.. +++..+..+...||+|++|.|.+|
T Consensus 151 ~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 66679999999999754421 1 12 367899999998875 677889888888999999999766
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.80 E-value=1.7e-08 Score=107.04 Aligned_cols=309 Identities=15% Similarity=0.154 Sum_probs=178.7
Q ss_pred HHHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchh-hcCCceEEEeeecccccccccccccce
Q 012979 73 ILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPW-VCEELKFLSISDCWFQSCWRKSEVLAF 151 (452)
Q Consensus 73 ~v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~-~~~~L~eL~l~~~~~~~~~~~~~~L~~ 151 (452)
.+..+....+.++.|+|+.+ .+ + .. ...|+.. ..+.|++|+|.++.. . ....++.
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~------~i------------~-~~-~~~~l~~~~~~~L~~L~L~~~~~---~-~~~~l~~ 158 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRM------IV------------S-DL-DLDRLAKARADDLETLKLDKCSG---F-TTDGLLS 158 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESC------BC------------C-HH-HHHHHHHHHGGGCCEEEEESCEE---E-EHHHHHH
T ss_pred HHHHHHhhCCCCCeEEeecc------Ee------------c-HH-HHHHHHHhccccCcEEECcCCCC---c-CHHHHHH
Confidence 45556667899999999832 11 1 11 1245533 334599999975421 1 1234555
Q ss_pred ecccCCCCcEEEeeceeecCCC-------CCCCCCCceeeeeeEeec---chhHHHHhccCCcCCeEEEecccccccCc-
Q 012979 152 ISSCCKSLVELEVKNAWLSVDN-------LNQMPMLTKLTLEFIRLE---DEDLDKVNDCFPCLQVLNLVGVGGFRQPK- 220 (452)
Q Consensus 152 ~~~~c~~L~~L~L~~~~~d~~~-------l~~fp~Lr~L~L~~v~i~---~~~L~~ll~~cP~Le~L~L~~~~g~~~~~- 220 (452)
+..+|++|++|+|.++.+...+ ...+|+|++|+|.+..++ +..+..++..||+|++|.|.+|.-...+.
T Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~ 238 (592)
T 3ogk_B 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238 (592)
T ss_dssp HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence 6668999999999986442221 247899999999887775 67889999999999999998753222111
Q ss_pred -cccccccEEEeeec-C-----CcceEEecCCceeEEEeeeecCCc---eeeeCCccceEEEeecccc--c--ccccccC
Q 012979 221 -IHLLHLKSCLWTVS-N-----APLSLAIYAPNLVKLELRCVKPKS---LVLQTPLLHDFCLSLEVAN--E--IRFQEFR 286 (452)
Q Consensus 221 -l~~~sLr~l~l~~s-~-----~~~~l~~~aP~Le~L~l~~~~~~~---l~i~~p~L~~~~l~i~~~~--~--~~l~~~~ 286 (452)
-.+++|+.+.+... . .........++|++|.++...... ..-..+.|+++.+.-.... . ..+.+++
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 33678888866421 1 011122366889998886432111 1112445666554321111 0 1246789
Q ss_pred cccEEEEeecccc-ccccccccCCceeEEEEEec----cCCCCcccc-ccChhHHhhcCCCccEEEEccCchhhhhhccc
Q 012979 287 NLMNLQLESSSLS-SLINTFPFGKTIKKLKVELL----KPGEPIGMK-NLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFD 360 (452)
Q Consensus 287 ~L~~L~l~~~~~~-~~~~l~~~~p~lkkL~L~~~----~~~~~~~~l-~~dl~~lL~~~PnL~~L~I~~~~~~~~~~~~~ 360 (452)
+|++|++...... .+..+...++++++|.+.-. ...++...+ ...+..+...+|+|++|++....... ..+.
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~--~~~~ 396 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN--ESLE 396 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH--HHHH
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH--HHHH
Confidence 9999999832211 22334467899999987620 000000000 11245778889999999994321110 0000
Q ss_pred cCccccccccccceeEEEEEee-cCCcch---hHHHHHHHhcccccccEEEEecc
Q 012979 361 KGRLEIRTEMKVLKEIIARLVV-DDISVT---RSFIFAIMNICSNLSDMALLIHR 411 (452)
Q Consensus 361 ~~~~~~~~~~~~lk~lv~~~~~-~~~~~~---~~fl~~ll~~a~~L~~m~i~~~~ 411 (452)
... ...+.|+++.+.... .+.-.. -+-+..++..++.|+.+.+..+.
T Consensus 397 ~l~----~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 397 SIG----TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHH----HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHH----hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 000 013567777765221 110111 13466778889999999997644
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.66 E-value=2.4e-07 Score=91.52 Aligned_cols=204 Identities=15% Similarity=0.143 Sum_probs=118.9
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
.+.|++|++.+..- ..++. ...+++|++|+|++..+ +.+.+..+++|++|+|.+..+.+-. . +..+|.
T Consensus 65 ~~~L~~L~l~~n~i-------~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~ 133 (347)
T 4fmz_A 65 LTNLEYLNLNGNQI-------TDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTK 133 (347)
T ss_dssp CTTCCEEECCSSCC-------CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTT
T ss_pred cCCccEEEccCCcc-------ccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCc
Confidence 57899999974321 11222 44688999999997433 4556888999999999887776422 2 677999
Q ss_pred CCeEEEecccccccCc--cccccccEEEeeecCCcc-eEEecCCceeEEEeeeecCCce--eeeCCccceEEEeeccccc
Q 012979 205 LQVLNLVGVGGFRQPK--IHLLHLKSCLWTVSNAPL-SLAIYAPNLVKLELRCVKPKSL--VLQTPLLHDFCLSLEVANE 279 (452)
Q Consensus 205 Le~L~L~~~~g~~~~~--l~~~sLr~l~l~~s~~~~-~l~~~aP~Le~L~l~~~~~~~l--~i~~p~L~~~~l~i~~~~~ 279 (452)
|++|++.++....... -.+++|+++.+.-..... ......|+|+.|++........ .-..+.|+.+.+.-.....
T Consensus 134 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred eeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC
Confidence 9999997764332222 336688887554222111 0123678888888854322111 1123344444432211111
Q ss_pred c-cccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 280 I-RFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 280 ~-~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
. .+.++++|++|++++..+..+.. +..+++++.|.+.-.. ..+ + ..+..+|+|++|++...
T Consensus 214 ~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~-------~-~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 214 ITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISD-------I-NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCC-------C-GGGTTCTTCCEEECCSS
T ss_pred CchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCC-------C-hhHhcCCCcCEEEccCC
Confidence 1 25567788888887654443222 5567788887753221 111 1 33567778888887553
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.65 E-value=1.7e-07 Score=92.87 Aligned_cols=189 Identities=19% Similarity=0.167 Sum_probs=108.9
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC-CCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
..++++|++.+..- ..+|.....+++|++|+|.+..+ .. ..+..+++|++|+|.+-.+. .+..-+..++
T Consensus 80 ~~~l~~L~L~~n~l-------~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPL-------PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSCC-------SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCT
T ss_pred ccceeEEEccCCCc-------hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCc
Confidence 47899999975422 13455455689999999997433 33 35788999999999988776 3333467799
Q ss_pred cCCeEEEeccccccc-Cc-cc----------cccccEEEeeecC---CcceEEecCCceeEEEeeeecCCceeeeCCccc
Q 012979 204 CLQVLNLVGVGGFRQ-PK-IH----------LLHLKSCLWTVSN---APLSLAIYAPNLVKLELRCVKPKSLVLQTPLLH 268 (452)
Q Consensus 204 ~Le~L~L~~~~g~~~-~~-l~----------~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~ 268 (452)
.|++|+|.+|..... +. +. +++|+.+.+.... .+..+. ..++|+.|++.....
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l----------- 218 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPL----------- 218 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCC-----------
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCC-----------
Confidence 999999987643221 11 11 4445554333211 111111 344555555432211
Q ss_pred eEEEeecccccccccccCcccEEEEeeccc-cccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEE
Q 012979 269 DFCLSLEVANEIRFQEFRNLMNLQLESSSL-SSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL 347 (452)
Q Consensus 269 ~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I 347 (452)
...+. .+.++++|++|+++...+ ..+...+..+++++.|.+.-..... .++.-+..+|+|++|+|
T Consensus 219 ------~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-------~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 219 ------SALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-------TLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp ------CCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-------BCCTTGGGCTTCCEEEC
T ss_pred ------CcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-------hcchhhhcCCCCCEEeC
Confidence 11111 355677888888875332 2223345567788887752211111 12334667788888888
Q ss_pred cc
Q 012979 348 GP 349 (452)
Q Consensus 348 ~~ 349 (452)
.+
T Consensus 285 ~~ 286 (328)
T 4fcg_A 285 RG 286 (328)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.50 E-value=3.2e-07 Score=88.29 Aligned_cols=197 Identities=17% Similarity=0.132 Sum_probs=105.8
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEe-ecchhHHHHhcc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIR-LEDEDLDKVNDC 201 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~-i~~~~L~~ll~~ 201 (452)
.+.+++|++++..-. ...+.....+++|++|+|.+..+ .+..+..+++|++|+|.+-. +..-. ...+..
T Consensus 31 ~~~l~~L~l~~n~i~------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS------HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTT
T ss_pred CCCceEEEeeCCcCC------ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcC
Confidence 357888888643110 11112234678899999986322 34457788899999888764 43211 122456
Q ss_pred CCcCCeEEEeccccccc-Cc-c-ccccccEEEeeecC---CcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeec
Q 012979 202 FPCLQVLNLVGVGGFRQ-PK-I-HLLHLKSCLWTVSN---APLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLE 275 (452)
Q Consensus 202 cP~Le~L~L~~~~g~~~-~~-l-~~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~ 275 (452)
++.|++|+|.++.-... +. + .+++|+.+.+.-.. ......-..++|++|++.... +.
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----------------l~ 166 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-----------------IS 166 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----------------CC
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-----------------cc
Confidence 88899998866431111 11 1 24556655332111 111111134566666653221 11
Q ss_pred ccccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979 276 VANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS 353 (452)
Q Consensus 276 ~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~ 353 (452)
..+.-.+.++.+|++|+++...+..+ ...+..+++++.|.+.-... .+ . ++..+..+|+|++|++.+..|.
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~---~---~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SA---L---PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SC---C---CHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC-Cc---C---CHHHcccCcccCEEeccCCCcc
Confidence 11222355677888888876544332 33455678888877532211 11 1 2356778888888888776443
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.48 E-value=4.9e-07 Score=93.11 Aligned_cols=214 Identities=17% Similarity=0.081 Sum_probs=116.5
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
+.++.|+|++..-. ...+.....+++|+.|+|.+.. +.+..+..+++|++|+|.+-.+..-. ...+..+|
T Consensus 75 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCT
T ss_pred CCccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccC
Confidence 57888888643211 1112223467888888888632 23345778888888888776655321 12245688
Q ss_pred cCCeEEEecccccccCc---cccccccEEEeeecCCcceE----EecCCceeEEEeeeecCCce--eeeCCccceEEEee
Q 012979 204 CLQVLNLVGVGGFRQPK---IHLLHLKSCLWTVSNAPLSL----AIYAPNLVKLELRCVKPKSL--VLQTPLLHDFCLSL 274 (452)
Q Consensus 204 ~Le~L~L~~~~g~~~~~---l~~~sLr~l~l~~s~~~~~l----~~~aP~Le~L~l~~~~~~~l--~i~~p~L~~~~l~i 274 (452)
+|++|+|.++.-...+. -.+++|+.+.+.-.+....+ ....++|++|++........ .-..+.|+.+.+.-
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence 88888886543111111 23567777644321111111 11467888888754322211 01123444443321
Q ss_pred c---ccccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 275 E---VANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 275 ~---~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
. ..+.-.+.++.+|++|+++...+..+ ...+..+++|+.|.+.-.. ...+ ++..+..+|+|++|++.++
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~----l~~~---~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN----LSSL---PHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CSCC---CTTSSTTCTTCCEEECCSS
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc----CCcc---ChHHhccccCCCEEEccCC
Confidence 1 11222456777888888875444332 2335567888887763221 1111 2356678899999999888
Q ss_pred chhh
Q 012979 351 AWSA 354 (452)
Q Consensus 351 ~~~~ 354 (452)
.|.+
T Consensus 301 p~~C 304 (452)
T 3zyi_A 301 PWNC 304 (452)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 6643
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.43 E-value=1e-06 Score=86.87 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=17.8
Q ss_pred ccccCcccEEEEeeccccccccccccCCceeEEEE
Q 012979 282 FQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKV 316 (452)
Q Consensus 282 l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L 316 (452)
+.++++|++|+++...+.. ...+..+++++.|.+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNV 272 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEEC
T ss_pred hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEc
Confidence 4455666666666443332 233445566666554
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.42 E-value=6.8e-07 Score=91.72 Aligned_cols=193 Identities=17% Similarity=0.124 Sum_probs=100.6
Q ss_pred ccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc---ccccccc
Q 012979 154 SCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK---IHLLHLK 227 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~---l~~~sLr 227 (452)
..+++|++|+|.+..+ .+..+..+++|++|+|.+-.+..-. ...+..+++|++|+|.++.-...+. -.+++|+
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 3567777777775322 2334667777777777765554211 1123557777777775542111111 2245666
Q ss_pred EEEeeecCC----cceEEecCCceeEEEeeeecCCce--eeeCCccceEEEee---cccccccccccCcccEEEEeeccc
Q 012979 228 SCLWTVSNA----PLSLAIYAPNLVKLELRCVKPKSL--VLQTPLLHDFCLSL---EVANEIRFQEFRNLMNLQLESSSL 298 (452)
Q Consensus 228 ~l~l~~s~~----~~~l~~~aP~Le~L~l~~~~~~~l--~i~~p~L~~~~l~i---~~~~~~~l~~~~~L~~L~l~~~~~ 298 (452)
.+.+.-... .....-..++|+.|++........ ....+.|+.+.+.- ...+.-.+.++.+|++|+++...+
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 664432110 000111457777777754322111 01122344433321 111122455778888888875444
Q ss_pred ccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhh
Q 012979 299 SSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSA 354 (452)
Q Consensus 299 ~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~ 354 (452)
..+ ...+..+++|+.|.|.-. ....+ ++..+..+|+|+.|++.++.|++
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N----~l~~~---~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHN----NLTLL---PHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTS----CCCCC---CTTTTSSCTTCCEEECCSSCEEC
T ss_pred eEEChhhhcCCCCCCEEECCCC----CCCcc---ChhHhccccCCCEEEcCCCCccC
Confidence 332 233556788888775322 11111 23567788999999999887754
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.40 E-value=2.8e-06 Score=87.68 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=33.9
Q ss_pred ccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979 282 FQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS 353 (452)
Q Consensus 282 l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~ 353 (452)
+.++.+|++|+++...+..+ ...+..+++|+.|.+.-. ....+ ++..+..+|+|++|++.+..|.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N----~l~~~---~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN----QLTTL---EESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS----CCSCC---CGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC----cCcee---CHhHcCCCcccCEEEccCCCcc
Confidence 34455666666654333221 223345566666554211 11111 2356677888999988877664
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.40 E-value=1.8e-06 Score=84.67 Aligned_cols=211 Identities=14% Similarity=0.040 Sum_probs=115.1
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeec--eeec--CCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKN--AWLS--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~--~~~d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
..+++|++.+..- .....+|.....++.|++|+|.+ ...+ +..+..+++|++|+|.+..+.+..- ..+..+
T Consensus 50 ~~l~~L~L~~~~l----~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNL----PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCC----SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGC
T ss_pred ceEEEEECCCCCc----cCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCC
Confidence 5788999974321 11113444556788999999983 3332 3457889999999999887753211 224569
Q ss_pred CcCCeEEEeccccc-ccCc--cccccccEEEeeecC----CcceEEecCC-ceeEEEeeeecCCce---eeeCCccceEE
Q 012979 203 PCLQVLNLVGVGGF-RQPK--IHLLHLKSCLWTVSN----APLSLAIYAP-NLVKLELRCVKPKSL---VLQTPLLHDFC 271 (452)
Q Consensus 203 P~Le~L~L~~~~g~-~~~~--l~~~sLr~l~l~~s~----~~~~l~~~aP-~Le~L~l~~~~~~~l---~i~~p~L~~~~ 271 (452)
++|++|+|.++.-. ..+. -.+++|+++.+.... .+..+. ..+ +|+.|++........ .+....|+.+.
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~ 203 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD 203 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCcccEEE
Confidence 99999999765311 1222 236788887554221 111222 333 888888753221100 00111244433
Q ss_pred Eee---cccccccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEc
Q 012979 272 LSL---EVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLG 348 (452)
Q Consensus 272 l~i---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~ 348 (452)
+.- .......+.++++|+.|+++...+......+...++++.|.+.-... . -.++..+..+|+|+.|++.
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l----~---~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI----Y---GTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC----E---ECCCGGGGGCTTCCEEECC
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc----c---CcCChHHhcCcCCCEEECc
Confidence 321 11122244567777788877544432233345567777777532211 0 0124556777888888876
Q ss_pred cC
Q 012979 349 PR 350 (452)
Q Consensus 349 ~~ 350 (452)
..
T Consensus 277 ~N 278 (313)
T 1ogq_A 277 FN 278 (313)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.39 E-value=1.3e-06 Score=89.38 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=32.0
Q ss_pred ccCCCCcEEEeeceeec---C--CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 154 SCCKSLVELEVKNAWLS---V--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~d---~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
..+++|++|+|.+..+. + ..+..+++|++|+|.+-.+.+..-..++..++.|++|+|.++
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 34566666666653221 1 125566666666666655543322223455666666666543
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.38 E-value=1.9e-06 Score=89.04 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=30.2
Q ss_pred cccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 283 QEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 283 ~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
..+++|+.|+++...+.... .+..+++++.|.+.-. ... +++. +..+|+|+.|++...
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n----~l~----~~~~-~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGAN----QIS----NISP-LAGLTALTNLELNEN 297 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS----CCC----CCGG-GTTCTTCSEEECCSS
T ss_pred hcCCCCCEEECCCCccccch-hhhcCCCCCEEECCCC----ccC----cccc-ccCCCccCeEEcCCC
Confidence 34556666666543333221 1445566666554211 110 1122 677889999998654
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.37 E-value=2.6e-06 Score=85.70 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=71.3
Q ss_pred ccCCCCcEEEeeceee-cCC-C-CCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEE
Q 012979 154 SCCKSLVELEVKNAWL-SVD-N-LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCL 230 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~-d~~-~-l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~ 230 (452)
..+++|++|+|.+..+ ..+ . +..+++|++|+|.+-.+..-.- ..+..++.|++|+|.++.-...+--.+++|+.+.
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~ 192 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 192 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccccccccccceee
Confidence 3566777777775322 222 2 4566777777776655542211 1235567777777755421111112245666653
Q ss_pred eeecCCcceEEecCCceeEEEeeeecCCceee-eCCccceEEEeecccc-cccccccCcccEEEEeecccccc-cccccc
Q 012979 231 WTVSNAPLSLAIYAPNLVKLELRCVKPKSLVL-QTPLLHDFCLSLEVAN-EIRFQEFRNLMNLQLESSSLSSL-INTFPF 307 (452)
Q Consensus 231 l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i-~~p~L~~~~l~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~ 307 (452)
+.... ...+. ..++|++|++.......... ..+.|+.+.+.-.... ...+.++++|++|+++...+..+ ...+..
T Consensus 193 l~~n~-l~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 193 VSYNL-LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp CCSSC-CSEEE-CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccccc-ccccC-CCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 32111 11122 34566666654322111100 0123333332211110 01334556666666664433322 223445
Q ss_pred CCceeEEEE
Q 012979 308 GKTIKKLKV 316 (452)
Q Consensus 308 ~p~lkkL~L 316 (452)
+++++.|.+
T Consensus 271 l~~L~~L~L 279 (390)
T 3o6n_A 271 MQRLERLYI 279 (390)
T ss_dssp CSSCCEEEC
T ss_pred cccCCEEEC
Confidence 566666654
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.36 E-value=1.8e-06 Score=85.46 Aligned_cols=168 Identities=21% Similarity=0.183 Sum_probs=107.2
Q ss_pred CCCCcEEEeeceee-c-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc--cccccccEEEe
Q 012979 156 CKSLVELEVKNAWL-S-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK--IHLLHLKSCLW 231 (452)
Q Consensus 156 c~~L~~L~L~~~~~-d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~--l~~~sLr~l~l 231 (452)
...++.|+|.+..+ . ++.+..+++|++|+|.+..+. .+..-+..+++|++|+|.++.-...+. -.+++|+.+.+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 36799999997433 2 345778999999999988776 333344679999999998764222222 23567777755
Q ss_pred eecC----CcceEE--------ecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccc
Q 012979 232 TVSN----APLSLA--------IYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLS 299 (452)
Q Consensus 232 ~~s~----~~~~l~--------~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~ 299 (452)
.-.. .+..+. -..++|+.|++..... ...|. .+.++++|++|+++...+.
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-----------------~~lp~-~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-----------------RSLPA-SIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-----------------CCCCG-GGGGCTTCCEEEEESSCCC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-----------------CcchH-hhcCCCCCCEEEccCCCCC
Confidence 4321 111111 1367777777643211 11121 3667889999999976665
Q ss_pred ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 300 SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 300 ~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
.+...+..+++++.|.+.-..... .++..+..+|+|++|+|...
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~-------~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALR-------NYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCC-------BCCCCTTCCCCCCEEECTTC
T ss_pred cCchhhccCCCCCEEECcCCcchh-------hhHHHhcCCCCCCEEECCCC
Confidence 555556778999998863211111 12456778999999999763
No 18
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.35 E-value=6e-07 Score=88.12 Aligned_cols=117 Identities=15% Similarity=0.021 Sum_probs=68.5
Q ss_pred hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
..+.|++|++++..- ....+.....+++|++|+|.+..+ +.+++..+++|++|+|.+-.+.+- ..+|
T Consensus 32 ~~~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l------~~~~ 99 (317)
T 3o53_A 32 SAWNVKELDLSGNPL------SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGP 99 (317)
T ss_dssp TGGGCSEEECTTSCC------CCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE------EECT
T ss_pred cCCCCCEEECcCCcc------CcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc------cCCC
Confidence 356789999974321 112222345688999999987433 333478899999999987766542 2358
Q ss_pred cCCeEEEecccccccCccccccccEEEeeecC---CcceEEecCCceeEEEee
Q 012979 204 CLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSN---APLSLAIYAPNLVKLELR 253 (452)
Q Consensus 204 ~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~ 253 (452)
.|++|.+.++.-...+.-.+++|+.+.+.-.. .........++|++|++.
T Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp TCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred CcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 99999997653211122235566666443211 111111245677777764
No 19
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.34 E-value=2.8e-07 Score=66.45 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=33.4
Q ss_pred CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979 2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCK 38 (452)
Q Consensus 2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~ 38 (452)
++.||+|++.+|+++|+ .+|+++++.|||+|+.+..
T Consensus 9 ~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHT
T ss_pred HHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC
Confidence 57899999999999996 9999999999999999864
No 20
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.30 E-value=2.7e-06 Score=88.23 Aligned_cols=155 Identities=16% Similarity=0.107 Sum_probs=65.4
Q ss_pred cCCCCcEEEeeceeecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc-cccccccEEEeee
Q 012979 155 CCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK-IHLLHLKSCLWTV 233 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~-l~~~sLr~l~l~~ 233 (452)
.+++|++|+|++..+...++..+++|++|+|.+-.+++-. +..++.|++|.+.++. ..... -.+++|+.+.+..
T Consensus 83 ~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHL 157 (457)
T ss_dssp TCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTT
T ss_pred cCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCC
Confidence 3455555555543222112455555555555555444322 3445566666554332 11111 1234455543321
Q ss_pred cC-CcceEEecCCceeEEEeeeecCCceee-eCCccceEEEeecccccccccccCcccEEEEeeccccccccccccCCce
Q 012979 234 SN-APLSLAIYAPNLVKLELRCVKPKSLVL-QTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTI 311 (452)
Q Consensus 234 s~-~~~~l~~~aP~Le~L~l~~~~~~~l~i-~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~l 311 (452)
.. ....-....++|+.|++.........+ ..+.|+.+.+.-.+...+.+.++++|+.|+++...+..+ . +..++++
T Consensus 158 n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-p-~~~l~~L 235 (457)
T 3bz5_A 158 NKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-D-VTPLTQL 235 (457)
T ss_dssp CSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C-CTTCTTC
T ss_pred CCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc-C-ccccCCC
Confidence 10 000001144566666654332211111 122334433321122223445566666666665444332 2 4456666
Q ss_pred eEEEE
Q 012979 312 KKLKV 316 (452)
Q Consensus 312 kkL~L 316 (452)
+.|.+
T Consensus 236 ~~L~l 240 (457)
T 3bz5_A 236 TYFDC 240 (457)
T ss_dssp SEEEC
T ss_pred CEEEe
Confidence 66654
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.30 E-value=1.1e-05 Score=80.00 Aligned_cols=176 Identities=19% Similarity=0.217 Sum_probs=101.1
Q ss_pred cCCceEEEeeecccccccccccccce-ecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhcc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDC 201 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~ 201 (452)
.+.+++|++++..- ..++. ....+++|+.|+|.+..+ .+..+..+++|++|+|.+-.+..-.- ..+..
T Consensus 51 ~~~L~~L~l~~n~i-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~ 122 (353)
T 2z80_A 51 TEAVKSLDLSNNRI-------TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-SWFKP 122 (353)
T ss_dssp CTTCCEEECTTSCC-------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-HHHTT
T ss_pred cccCcEEECCCCcC-------cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-hHhCC
Confidence 35788998864321 01222 234688999999986432 23457888999999998877764222 33567
Q ss_pred CCcCCeEEEecccccccCccccccccEEEeeecCCcc-eEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccc
Q 012979 202 FPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPL-SLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEI 280 (452)
Q Consensus 202 cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~-~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~ 280 (452)
+++|++|+|.++. ... ... ...-..++|++|++...... . ..+..
T Consensus 123 l~~L~~L~L~~n~-l~~-----------------l~~~~~~~~l~~L~~L~l~~n~~~---------~-------~~~~~ 168 (353)
T 2z80_A 123 LSSLTFLNLLGNP-YKT-----------------LGETSLFSHLTKLQILRVGNMDTF---------T-------KIQRK 168 (353)
T ss_dssp CTTCSEEECTTCC-CSS-----------------SCSSCSCTTCTTCCEEEEEESSSC---------C-------EECTT
T ss_pred CccCCEEECCCCC-Ccc-----------------cCchhhhccCCCCcEEECCCCccc---------c-------ccCHH
Confidence 8999999996542 111 001 11125678888887532100 0 01112
Q ss_pred cccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 281 RFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 281 ~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
.+.++.+|++|+++...+..+ ...+..+++++.|.+.-... ..+ +..++..+|+|++|++...
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~---~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH----ILL---LEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS----TTH---HHHHHHHTTTEEEEEEESC
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc----ccc---hhhhhhhcccccEEECCCC
Confidence 445667777888876444332 23445677777777642211 111 2355666788888887654
No 22
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.29 E-value=1.4e-06 Score=91.09 Aligned_cols=117 Identities=15% Similarity=0.020 Sum_probs=70.5
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
.+.|++|+|++..- ....|.....+++|+.|+|.+..+ +.+++..+++|++|+|.+-.+.+- ..+|.
T Consensus 33 ~~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l------~~~~~ 100 (487)
T 3oja_A 33 AWNVKELDLSGNPL------SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPS 100 (487)
T ss_dssp GGGCCEEECCSSCC------CCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEE------EECTT
T ss_pred CCCccEEEeeCCcC------CCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCC------CCCCC
Confidence 45789999974321 112223345688999999997433 333488899999999988776542 23489
Q ss_pred CCeEEEecccccccCccccccccEEEeeecC---CcceEEecCCceeEEEeee
Q 012979 205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVSN---APLSLAIYAPNLVKLELRC 254 (452)
Q Consensus 205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~~ 254 (452)
|++|+|.++.-...+.-.+++|+.+.+.-.. ......-..++|++|++..
T Consensus 101 L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp CCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred cCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 9999997653222222335677777543221 1111112567888888754
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.28 E-value=4e-06 Score=84.27 Aligned_cols=209 Identities=14% Similarity=0.104 Sum_probs=113.9
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
.+.|++|++.+..-. ...+.....+++|++|+|.+..+ + +..+..+++|++|+|.+..+..-. ..++..+
T Consensus 68 l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l 140 (390)
T 3o6n_A 68 FRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNT 140 (390)
T ss_dssp CCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred cccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC-HHHhcCC
Confidence 467888888643110 11111234678899999986433 2 234678899999999877665211 1234668
Q ss_pred CcCCeEEEeccccccc-Cc-c-ccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccc
Q 012979 203 PCLQVLNLVGVGGFRQ-PK-I-HLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANE 279 (452)
Q Consensus 203 P~Le~L~L~~~~g~~~-~~-l-~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~ 279 (452)
|+|++|+|.++.-... +. + .+++|+.+.+.-......-.-..|+|+.|.+........ -..+.++.+.+.-.....
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL-AIPIAVEELDASHNSINV 219 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE-ECCSSCSEEECCSSCCCE
T ss_pred CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc-CCCCcceEEECCCCeeee
Confidence 8999999976531111 11 2 356788775542221111112567888888754332211 112345554432212222
Q ss_pred ccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 280 IRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 280 ~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
+......+|+.|+++...+.. ...+..+++++.|.+.-... .+ . ++..+..+|+|++|++...
T Consensus 220 ~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l-~~---~---~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 220 VRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNEL-EK---I---MYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp EECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC-CE---E---ESGGGTTCSSCCEEECCSS
T ss_pred ccccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcC-CC---c---ChhHccccccCCEEECCCC
Confidence 222234688899998655543 34556788999988642211 10 0 1344556677777777543
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.28 E-value=3.9e-06 Score=89.65 Aligned_cols=98 Identities=16% Similarity=0.047 Sum_probs=49.9
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCC-C-CCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVD-N-LNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~-~-l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
...|+.|+|++... ....+....++++|+.|+|.+..+ ..+ . +..+++|++|+|.+-.+..-.- ..+..+
T Consensus 98 l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l 170 (597)
T 3oja_B 98 AHTIQKLYMGFNAI------RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQAT 170 (597)
T ss_dssp CTTCCEEECCSSCC------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTC
T ss_pred CCCCCEEECCCCcC------CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcC
Confidence 35677777753211 111122234567777777776332 222 2 4667777777777655543211 123457
Q ss_pred CcCCeEEEecccccccCccccccccEEE
Q 012979 203 PCLQVLNLVGVGGFRQPKIHLLHLKSCL 230 (452)
Q Consensus 203 P~Le~L~L~~~~g~~~~~l~~~sLr~l~ 230 (452)
++|++|+|.++.-...+--.+++|+.+.
T Consensus 171 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~ 198 (597)
T 3oja_B 171 TSLQNLQLSSNRLTHVDLSLIPSLFHAN 198 (597)
T ss_dssp TTCCEEECTTSCCSBCCGGGCTTCSEEE
T ss_pred CcCcEEECcCCCCCCcChhhhhhhhhhh
Confidence 7777777765421111112245666653
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.28 E-value=9e-06 Score=83.94 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=74.4
Q ss_pred hccCCcCCeEEEecccccccCc-cccccccEEEeeecCCc--ceEEecCCceeEEEeeeecCCce--eeeCCccceEEEe
Q 012979 199 NDCFPCLQVLNLVGVGGFRQPK-IHLLHLKSCLWTVSNAP--LSLAIYAPNLVKLELRCVKPKSL--VLQTPLLHDFCLS 273 (452)
Q Consensus 199 l~~cP~Le~L~L~~~~g~~~~~-l~~~sLr~l~l~~s~~~--~~l~~~aP~Le~L~l~~~~~~~l--~i~~p~L~~~~l~ 273 (452)
+..++.|++|+|.++.-...+. -.+++|+++.+.-.... ..+ -..++|+.|++........ .-..+.|+.+.+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccc-cccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence 3456666666665442111111 22456666644322110 011 2467777777754322111 1123455555443
Q ss_pred eccccc-ccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 274 LEVANE-IRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 274 i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
-..... ..+.++++|++|+++...+..+.. +..+++++.|.+.-.. ... ++. +..+|+|+.|++...
T Consensus 252 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~----l~~----~~~-~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 252 NNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ----LED----ISP-ISNLKNLTYLTLYFN 319 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC----CSC----CGG-GGGCTTCSEEECCSS
T ss_pred CCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc----ccC----chh-hcCCCCCCEEECcCC
Confidence 211111 126678899999998755544322 5678999998863221 111 122 678999999999765
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.23 E-value=8.4e-07 Score=86.18 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=33.2
Q ss_pred ccCCCCcEEEeeceee-c-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 154 SCCKSLVELEVKNAWL-S-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~-d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
..+++|++|+|++..+ . ++.+..+++|++|+|.+..+.+-.-...+..+++|++|+|.++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence 3466777777765322 1 1235566777777776655543222123455677777777543
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.22 E-value=8.1e-06 Score=84.26 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=28.4
Q ss_pred cccEEEEeeccccccc-cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 287 NLMNLQLESSSLSSLI-NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 287 ~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
+|++|+++...+..+. ..+..+++++.|.+.-.. .... .+..+..+|+|++|++...
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~---~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP----ISTI---EGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC----CCEE---CTTSCTTCTTCCEEECCSS
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCc----CCcc---ChhhccccccCCEEECCCC
Confidence 5555555543332221 123456666666642111 1111 1244667888888888654
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.20 E-value=4.4e-06 Score=81.72 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=54.8
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
.+.|++|.+.+..- ..++. ...+++|++|+|.+..+ +.+.+..+++|++|+|.+-.+.+-. -+..++.
T Consensus 40 l~~L~~L~l~~~~i-------~~l~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGTGV-------TTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTSCC-------CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTT
T ss_pred cCCcCEEEeeCCCc-------cCchh-hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCC
Confidence 46788998864321 12332 34688999999997543 4444888999999999988776532 2577999
Q ss_pred CCeEEEecc
Q 012979 205 LQVLNLVGV 213 (452)
Q Consensus 205 Le~L~L~~~ 213 (452)
|++|+|.++
T Consensus 109 L~~L~l~~n 117 (308)
T 1h6u_A 109 IKTLDLTST 117 (308)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 999999765
No 29
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.20 E-value=4.2e-06 Score=76.19 Aligned_cols=149 Identities=13% Similarity=0.154 Sum_probs=94.6
Q ss_pred ccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEee
Q 012979 154 SCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWT 232 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~ 232 (452)
..+++|+.|+|.+..+ +.+++..+++|++|+|.+..+.+- . -++.+|+|++|.|.++. ....
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~-l~~~------------- 103 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKD-VTSD------------- 103 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTT-CBGG-------------
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCc-cCcc-------------
Confidence 4577899999997433 446788899999999988755442 2 35679999999997643 1110
Q ss_pred ecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecc-ccccccccccCCce
Q 012979 233 VSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSS-LSSLINTFPFGKTI 311 (452)
Q Consensus 233 ~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~l~~~~p~l 311 (452)
....+. ..|+|++|++...... ....-.+.++++|++|+++... +.. +..+..++++
T Consensus 104 ---~~~~l~-~l~~L~~L~Ls~n~i~-----------------~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L 161 (197)
T 4ezg_A 104 ---KIPNLS-GLTSLTLLDISHSAHD-----------------DSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPEL 161 (197)
T ss_dssp ---GSCCCT-TCTTCCEEECCSSBCB-----------------GGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSC
T ss_pred ---cChhhc-CCCCCCEEEecCCccC-----------------cHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCC
Confidence 001122 5688999888543211 0000134567888999998654 433 3456678899
Q ss_pred eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 312 KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 312 kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
+.|.+.-. ...+ ++ .+..+|+|++|++.+.
T Consensus 162 ~~L~l~~n-~i~~-------~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 162 KSLNIQFD-GVHD-------YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CEEECTTB-CCCC-------CT-TGGGCSSCCEEEECBC
T ss_pred CEEECCCC-CCcC-------hH-HhccCCCCCEEEeeCc
Confidence 99886321 1111 12 5678899999999654
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.19 E-value=4.2e-06 Score=79.99 Aligned_cols=80 Identities=16% Similarity=0.073 Sum_probs=51.2
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
.++++|++++..-. ..-+.....+++|++|+|.+..+ ....+..+++|++|+|.+-.+..-... .+..++
T Consensus 28 ~~l~~L~ls~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCC------EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCT
T ss_pred CCccEEECCCCccc------ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCc
Confidence 56888888643110 11111234678899999987433 233577889999999987766543222 245689
Q ss_pred cCCeEEEecc
Q 012979 204 CLQVLNLVGV 213 (452)
Q Consensus 204 ~Le~L~L~~~ 213 (452)
+|++|.+.++
T Consensus 101 ~L~~L~l~~n 110 (276)
T 2z62_A 101 SLQKLVAVET 110 (276)
T ss_dssp TCCEEECTTS
T ss_pred cccEEECCCC
Confidence 9999999654
No 31
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=7.7e-07 Score=89.78 Aligned_cols=165 Identities=19% Similarity=0.113 Sum_probs=93.8
Q ss_pred CCCCCCceeeeeeEee--------cchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeeecCCcc----eEE-
Q 012979 175 NQMPMLTKLTLEFIRL--------EDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPL----SLA- 241 (452)
Q Consensus 175 ~~fp~Lr~L~L~~v~i--------~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~----~l~- 241 (452)
..||+|++|.|..+.. ...++..+++.+|+||+|.|.|+.+...+.+.+++|+++.+..+.... .+.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHH
Confidence 4567777777655432 234688899999999999998875554445668899999776443211 121
Q ss_pred ecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccccc-c-cccc--ccCCceeEEEEE
Q 012979 242 IYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSS-L-INTF--PFGKTIKKLKVE 317 (452)
Q Consensus 242 ~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~-~-~~l~--~~~p~lkkL~L~ 317 (452)
...|+|++|+++..... + .....+..+. +.+...++++|+.|.+..+.+.. . ..++ ..+|+|++|.|.
T Consensus 216 ~~lp~L~~L~L~~~~~~-~-~~~~~~~~l~------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVED-Y-GFDGDMNVFR------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp SBCTTCCEEEEECBCGG-G-TCCSCGGGTG------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred ccCCCCcEEEEeccccc-c-ccchhHHHHH------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 26799999998532100 0 0000011100 11222457899999997544321 1 1111 357899998873
Q ss_pred eccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 318 LLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 318 ~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
.. ...+.... .+..-++++|+|++|+|...
T Consensus 288 ~n-~L~d~G~~--~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 288 AG-VLTDEGAR--LLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SS-CCBHHHHH--HHHTTHHHHTTCSEEECCSB
T ss_pred CC-CCChHHHH--HHHhhcccCCcceEEECCCC
Confidence 32 11111110 12234577899999999654
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.18 E-value=1.2e-05 Score=78.78 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=35.2
Q ss_pred cccccCcccEEEEeeccccccc-cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCc
Q 012979 281 RFQEFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRA 351 (452)
Q Consensus 281 ~l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~ 351 (452)
.+.++.+|++|+++...+..+. ..+..+++++.|.+.-.. .. .++.-+..+|+|++|++....
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~----l~----~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK----LV----KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC----CS----SCCTTTTTCSSCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc----Cc----cCChhhccCCCcCEEECCCCc
Confidence 3456677777877754443322 234556777777653211 11 123345667788888876543
No 33
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.17 E-value=3.6e-06 Score=80.45 Aligned_cols=65 Identities=23% Similarity=0.352 Sum_probs=36.8
Q ss_pred ccccCcccEEEEeeccccccc-cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979 282 FQEFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS 353 (452)
Q Consensus 282 l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~ 353 (452)
+.++++|++|+++...+..+. ..+..+++++.|.+.-.. ...+ ++..+..+|+|+.|++.+..|.
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~----l~~~---~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ----LKRV---PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC----CSCC---CTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc----CCcC---CHHHhccccCCCEEEecCCCee
Confidence 456777888888754443322 224556778887753211 1111 1245667788888888766443
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.17 E-value=3.7e-06 Score=80.52 Aligned_cols=176 Identities=20% Similarity=0.182 Sum_probs=95.3
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
.+.+++|.+.+... ..++. ...+++|++|+|.+..+ +.+.+..+++|++|+|.+..+.+-. ...+..++.
T Consensus 40 l~~L~~L~l~~~~i-------~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~ 110 (272)
T 3rfs_A 40 LNSIDQIIANNSDI-------KSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTN 110 (272)
T ss_dssp HTTCCEEECTTSCC-------CCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTT
T ss_pred ccceeeeeeCCCCc-------ccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcC
Confidence 45677777753311 11222 23577788888876333 3455677788888888766555321 122355788
Q ss_pred CCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccc
Q 012979 205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQE 284 (452)
Q Consensus 205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~ 284 (452)
|++|+|.++. ... ......-..++|++|++..... ...+.-.+.+
T Consensus 111 L~~L~L~~n~-l~~-----------------~~~~~~~~l~~L~~L~L~~n~l-----------------~~~~~~~~~~ 155 (272)
T 3rfs_A 111 LKELVLVENQ-LQS-----------------LPDGVFDKLTNLTYLNLAHNQL-----------------QSLPKGVFDK 155 (272)
T ss_dssp CCEEECTTSC-CCC-----------------CCTTTTTTCTTCCEEECCSSCC-----------------CCCCTTTTTT
T ss_pred CCEEECCCCc-CCc-----------------cCHHHhccCCCCCEEECCCCcc-----------------CccCHHHhcc
Confidence 8888886542 110 0001111457788877743211 1111123456
Q ss_pred cCcccEEEEeeccccccc-cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCch
Q 012979 285 FRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAW 352 (452)
Q Consensus 285 ~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~ 352 (452)
+.+|++|+++...+..+. ..+..+++++.|.+.-... . -. ++..+..+|+|+.|++....|
T Consensus 156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~---~~---~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-K---SV---PDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-S---CC---CTTTTTTCTTCCEEECCSSCB
T ss_pred CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC-C---cc---CHHHHhCCcCCCEEEccCCCc
Confidence 778888888765443322 2245677888877532211 1 11 235567788888888866533
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.16 E-value=7.7e-06 Score=87.36 Aligned_cols=121 Identities=15% Similarity=0.149 Sum_probs=71.2
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
.+.|+.|+|.+..- ....+.....+++|+.|+|++..+ . +..++.+++|++|+|.+..+..-. ..++..+
T Consensus 74 l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l 146 (597)
T 3oja_B 74 FRQVELLNLNDLQI------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNT 146 (597)
T ss_dssp CCCCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred CCCCcEEECCCCCC------CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC-HHHhccC
Confidence 47788998864321 111122334688999999997433 2 234688999999999887765211 1334679
Q ss_pred CcCCeEEEecccccccC--cc-ccccccEEEeeecCCcceEEecCCceeEEEee
Q 012979 203 PCLQVLNLVGVGGFRQP--KI-HLLHLKSCLWTVSNAPLSLAIYAPNLVKLELR 253 (452)
Q Consensus 203 P~Le~L~L~~~~g~~~~--~l-~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~ 253 (452)
|+|++|+|.++.-...+ .+ .+++|+.+.+.-......-.-..|+|+.|.+.
T Consensus 147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200 (597)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECC
T ss_pred CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcc
Confidence 99999999765321111 12 36788888553221111111245666666654
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.15 E-value=1.3e-05 Score=84.09 Aligned_cols=228 Identities=17% Similarity=0.103 Sum_probs=105.5
Q ss_pred cccCCCCcEEEeeceeecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccccccc---Cc--ccccccc
Q 012979 153 SSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQ---PK--IHLLHLK 227 (452)
Q Consensus 153 ~~~c~~L~~L~L~~~~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~---~~--l~~~sLr 227 (452)
...+ +|++|+|.++.+..-....+++|++|++.+..+....- . ..+|.|++|+|.++.-... +. -.+++|+
T Consensus 301 ~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~-~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 301 SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp CSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC-C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred hccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc-c--ccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 3344 66666666533321112456666666666544432110 0 4567777777754321110 00 2345666
Q ss_pred EEEeeecC---CcceEEecCCceeEEEeeeecCC-----ceeeeCCccceEEEeecc---cccccccccCcccEEEEeec
Q 012979 228 SCLWTVSN---APLSLAIYAPNLVKLELRCVKPK-----SLVLQTPLLHDFCLSLEV---ANEIRFQEFRNLMNLQLESS 296 (452)
Q Consensus 228 ~l~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~-----~l~i~~p~L~~~~l~i~~---~~~~~l~~~~~L~~L~l~~~ 296 (452)
.+.+.... .... ....++|++|++...... ...-..+.|+.+.+.-.. ...-.+.++++|++|++++.
T Consensus 377 ~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 377 YLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp EEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 66443211 1112 236677777776432110 001122344444332111 11123456777778877654
Q ss_pred ccc--ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhhhhhccccCccccccccccce
Q 012979 297 SLS--SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLK 374 (452)
Q Consensus 297 ~~~--~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~lk 374 (452)
.+. .+...+..+++++.|.+.-. ...+ + .+..+..+|+|++|++........ .... ....+.++
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~-----~-~~~~~~~l~~L~~L~l~~n~l~~~----~~~~---~~~l~~L~ 521 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQC-QLEQ-----L-SPTAFNSLSSLQVLNMASNQLKSV----PDGI---FDRLTSLQ 521 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTS-CCCE-----E-CTTTTTTCTTCCEEECCSSCCSCC----CTTT---TTTCTTCC
T ss_pred cCccccchhhhhcccCCCEEECCCC-cccc-----C-ChhhhhcccCCCEEeCCCCcCCCC----CHHH---hhcccCCc
Confidence 332 23344566777887765211 1110 0 134566788888888865411111 1000 11235777
Q ss_pred eEEEEE--eecCCcchhHHH-HHHHhccc
Q 012979 375 EIIARL--VVDDISVTRSFI-FAIMNICS 400 (452)
Q Consensus 375 ~lv~~~--~~~~~~~~~~fl-~~ll~~a~ 400 (452)
++.+.. +.++ -....|+ .++-.+..
T Consensus 522 ~L~l~~N~~~~~-~~~~~~~~~wl~~~~~ 549 (570)
T 2z63_A 522 KIWLHTNPWDCS-CPRIDYLSRWLNKNSQ 549 (570)
T ss_dssp EEECCSSCBCCC-TTTTHHHHHHHHHTGG
T ss_pred EEEecCCcccCC-CcchHHHHHHHHhccc
Confidence 776662 2232 3455666 55555443
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.15 E-value=1.8e-06 Score=85.71 Aligned_cols=198 Identities=19% Similarity=0.189 Sum_probs=100.3
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCC--CCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDN--LNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~--l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
.+.|++|++.+..- ....+.....+++|++|+|++..+ ..+. +..+++|++|+|.+-.+..-.-...+..+
T Consensus 75 l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l 148 (353)
T 2z80_A 75 CVNLQALVLTSNGI------NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148 (353)
T ss_dssp CTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC
T ss_pred CCCCCEEECCCCcc------CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccC
Confidence 46788998864311 111122234678999999987433 2222 67899999999988766532111245679
Q ss_pred CcCCeEEEeccccccc--C-c-cccccccEEEeeecCC----cceEEecCCceeEEEeeeecCCceeeeCCccceEEEee
Q 012979 203 PCLQVLNLVGVGGFRQ--P-K-IHLLHLKSCLWTVSNA----PLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSL 274 (452)
Q Consensus 203 P~Le~L~L~~~~g~~~--~-~-l~~~sLr~l~l~~s~~----~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i 274 (452)
|+|++|++.++..... + . -.+++|+.+.+.-... ...+. ..++|+.|++.... +
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~-----------------l 210 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQ-----------------H 210 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSC-----------------S
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCc-----------------c
Confidence 9999999977521111 1 1 1234444443321110 00111 33445555443211 1
Q ss_pred cccccccccccCcccEEEEeecccccc----ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 275 EVANEIRFQEFRNLMNLQLESSSLSSL----INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 275 ~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
...+...+..+.+|++|+++...+... .......+.++.+.+.-... .+... ..++..+..+|+|++|++...
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l-~~~~l--~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI-TDESL--FQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC-CHHHH--HHHHHHHHTCTTCCEEECCSS
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc-cCcch--hhhHHHHhcccCCCEEECCCC
Confidence 111222233466777888875333221 11122345566665532211 11000 123566788889999988654
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.13 E-value=4.2e-05 Score=80.06 Aligned_cols=80 Identities=21% Similarity=0.155 Sum_probs=54.6
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
+.+++|++++..- ....+....++++|++|+|++..+ .+..+..+++|++|+|.+-.+.+..-. .++.++
T Consensus 26 ~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKI------TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCC------CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCT
T ss_pred CCccEEECcCCcc------CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-HhccCC
Confidence 6788999874321 111222345788999999997432 234578899999999988777643322 246799
Q ss_pred cCCeEEEecc
Q 012979 204 CLQVLNLVGV 213 (452)
Q Consensus 204 ~Le~L~L~~~ 213 (452)
+|++|+|.++
T Consensus 99 ~L~~L~Ls~n 108 (549)
T 2z81_A 99 SLKYLNLMGN 108 (549)
T ss_dssp TCCEEECTTC
T ss_pred CCcEEECCCC
Confidence 9999999765
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.12 E-value=1.1e-05 Score=83.63 Aligned_cols=206 Identities=15% Similarity=0.053 Sum_probs=119.8
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCL 205 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~L 205 (452)
.+.|++|++++..- . .++ ...+++|++|+|.+..+..-.+..+++|++|+|.+-.+.+-. +..++.|
T Consensus 84 l~~L~~L~Ls~N~l----~---~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L 150 (457)
T 3bz5_A 84 NTNLTYLACDSNKL----T---NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID----VSHNTQL 150 (457)
T ss_dssp CTTCSEEECCSSCC----S---CCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC----CTTCTTC
T ss_pred CCCCCEEECcCCCC----c---eee--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec----cccCCcC
Confidence 46677777753311 1 122 346789999999974443223788899999999887776643 5679999
Q ss_pred CeEEEecccccccCc-cccccccEEEeeecCCcc-eEEecCCceeEEEeeeecCCceee-eCCccceEEEeecccccccc
Q 012979 206 QVLNLVGVGGFRQPK-IHLLHLKSCLWTVSNAPL-SLAIYAPNLVKLELRCVKPKSLVL-QTPLLHDFCLSLEVANEIRF 282 (452)
Q Consensus 206 e~L~L~~~~g~~~~~-l~~~sLr~l~l~~s~~~~-~l~~~aP~Le~L~l~~~~~~~l~i-~~p~L~~~~l~i~~~~~~~l 282 (452)
++|.+.++....... -.+++|+.+.+....... .+ -..|+|+.|.+.........+ ..+.|+.+.+.-.+...+.+
T Consensus 151 ~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l-~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~ 229 (457)
T 3bz5_A 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV-SQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDV 229 (457)
T ss_dssp CEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCC-TTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCC
T ss_pred CEEECCCCCcccccccccCCcCCEEECCCCccceecc-ccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCc
Confidence 999997663222222 236788887554322111 12 267889999986543322211 23466665543222233446
Q ss_pred cccCcccEEEEeeccccccccccccCCceeEEEEEeccC-CCC---ccccccChhHHhhcCCCccEEEEccC
Q 012979 283 QEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKP-GEP---IGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 283 ~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~-~~~---~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
.++++|+.|+++...+..+ . ...+++++.|.+.-..- ..+ .... -.++ ...+|+|++|++...
T Consensus 230 ~~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~-~~~~--~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQTDLLEIDLTHNTQL-IYFQ--AEGCRKIKELDVTHN 296 (457)
T ss_dssp TTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTCCCSCCCCTTCTTC-CEEE--CTTCTTCCCCCCTTC
T ss_pred cccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCCCCCEEECCCCccC-Cccc--ccccccCCEEECCCC
Confidence 7788999999986554432 1 34577888876432110 000 0000 0011 356799999998664
No 40
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.11 E-value=7.7e-07 Score=87.32 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=28.6
Q ss_pred cCCCCcEEEeeceeec---C-CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 155 CCKSLVELEVKNAWLS---V-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~d---~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
.+++|++|+|.++.+. . ..+..+|+|++|+|.+..+++..... ++.||+|++|+|.+|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCC
Confidence 4555555665553321 1 12345555666665555554444433 344556666655544
No 41
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.10 E-value=9.5e-06 Score=89.35 Aligned_cols=122 Identities=17% Similarity=0.074 Sum_probs=71.9
Q ss_pred cCCceEEEeeecccccccccccccce--ecccCCCCcEEEeeceeec---CCC-CCCCCCCceeeeeeEeecchhHHH--
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAF--ISSCCKSLVELEVKNAWLS---VDN-LNQMPMLTKLTLEFIRLEDEDLDK-- 197 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~--~~~~c~~L~~L~L~~~~~d---~~~-l~~fp~Lr~L~L~~v~i~~~~L~~-- 197 (452)
.+.|++|+|++... ...+|. ....|++|++|+|.+..+. +.. +..+++|++|+|.+..+.+.....
T Consensus 99 l~~L~~L~Ls~n~l------~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 99 SASLTSLDLSRNSL------SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CTTCCEEECCSSEE------EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred CCCCCEEECCCCcC------CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 46788888874321 112333 3457889999999874332 222 267899999999887776543322
Q ss_pred HhccCCcCCeEEEeccccccc-CccccccccEEEeeecC---CcceEEecCCceeEEEeee
Q 012979 198 VNDCFPCLQVLNLVGVGGFRQ-PKIHLLHLKSCLWTVSN---APLSLAIYAPNLVKLELRC 254 (452)
Q Consensus 198 ll~~cP~Le~L~L~~~~g~~~-~~l~~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~~ 254 (452)
.+..|+.|++|+|.++.-... +.-.+++|+.+.+.... ....+ -..++|++|++..
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l-~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL-GDCSALQHLDISG 232 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBC-TTCCSCCEEECCS
T ss_pred hhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCccc-ccCCCCCEEECcC
Confidence 367788888888866532111 11346677777554221 11122 2567777777654
No 42
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.10 E-value=6.4e-06 Score=79.98 Aligned_cols=165 Identities=19% Similarity=0.169 Sum_probs=94.2
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
.+.|++|.+.+..- ..++. ...+++|++|+|.+..+ +.+.+..+++|++|+|.+-.+.+ +.. +..+++
T Consensus 45 l~~L~~L~l~~~~i-------~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNSDI-------KSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKK 113 (291)
T ss_dssp HHTCCEEECTTSCC-------CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTT
T ss_pred cCcccEEEccCCCc-------ccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCC
Confidence 45678888764321 11222 23578888888886433 33347788888888888776654 223 567888
Q ss_pred CCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccc
Q 012979 205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQE 284 (452)
Q Consensus 205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~ 284 (452)
|++|+|.++. .... ..+. ..|+|+.|++...... . . -.+.+
T Consensus 114 L~~L~L~~n~-i~~~------------------~~l~-~l~~L~~L~l~~n~l~----------~-------~--~~l~~ 154 (291)
T 1h6t_A 114 LKSLSLEHNG-ISDI------------------NGLV-HLPQLESLYLGNNKIT----------D-------I--TVLSR 154 (291)
T ss_dssp CCEEECTTSC-CCCC------------------GGGG-GCTTCCEEECCSSCCC----------C-------C--GGGGG
T ss_pred CCEEECCCCc-CCCC------------------hhhc-CCCCCCEEEccCCcCC----------c-------c--hhhcc
Confidence 8888886542 1111 0111 4577777777432211 0 0 13455
Q ss_pred cCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 285 FRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 285 ~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
+++|++|+++...+..+.. +..+++++.|.+.-. ...- ++. +..+|+|+.|++.+.
T Consensus 155 l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N----~i~~----l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN----HISD----LRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS----CCCB----CGG-GTTCTTCSEEEEEEE
T ss_pred CCCCCEEEccCCccccchh-hcCCCccCEEECCCC----cCCC----Chh-hccCCCCCEEECcCC
Confidence 6777777777554443322 556777777765221 1111 122 567778888877543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.09 E-value=1.4e-05 Score=78.49 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=15.8
Q ss_pred cccCcccEEEEeeccccccccccccCCceeEEEE
Q 012979 283 QEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKV 316 (452)
Q Consensus 283 ~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L 316 (452)
.++++|++|+++...+..+...+..+++++.|.+
T Consensus 237 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred cCCCCCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence 3445555555554333333233344555555554
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.09 E-value=8.2e-06 Score=83.60 Aligned_cols=186 Identities=18% Similarity=0.159 Sum_probs=108.5
Q ss_pred CCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc---cccccccEEE
Q 012979 157 KSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK---IHLLHLKSCL 230 (452)
Q Consensus 157 ~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~---l~~~sLr~l~ 230 (452)
++++.|+|.+.. +.+..+..+++|++|+|.+-.+..-.. ..+..+++|++|+|.++.-...+. -.+++|+.+.
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 579999999743 334568899999999999876654322 224669999999997653111111 2367888885
Q ss_pred eeecCCc---ceEEecCCceeEEEeeeecC-Cc----eeeeCCccceEEEeecccccc-cccccCcccEEEEeecccccc
Q 012979 231 WTVSNAP---LSLAIYAPNLVKLELRCVKP-KS----LVLQTPLLHDFCLSLEVANEI-RFQEFRNLMNLQLESSSLSSL 301 (452)
Q Consensus 231 l~~s~~~---~~l~~~aP~Le~L~l~~~~~-~~----l~i~~p~L~~~~l~i~~~~~~-~l~~~~~L~~L~l~~~~~~~~ 301 (452)
+.-.... ....-..|+|++|++..... .. ..-..+.|+.+.+.-.+...+ .+.++.+|++|+++...+..+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 5422111 11112568999999864211 10 011233555544321111111 345667888888876544332
Q ss_pred -ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 302 -INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 302 -~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
...+..+++|++|.+.-. ..... .+..+..+|+|++|+|...
T Consensus 223 ~~~~~~~l~~L~~L~L~~n----~l~~~---~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQS----QIQVI---ERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CTTTTTTCTTCCEEECTTC----CCCEE---CTTSSTTCTTCCEEECTTS
T ss_pred ChhhhccCccCCEEECCCC----ceeEE---ChhhhcCCCCCCEEECCCC
Confidence 234566788888775321 11111 1345678899999999764
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.08 E-value=8.2e-06 Score=83.37 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=67.3
Q ss_pred cCCceEEEeeeccccccccccccc-ceecccCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHH-HHhc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVL-AFISSCCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLD-KVND 200 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L-~~~~~~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~-~ll~ 200 (452)
.+.|+.|++.+... ...+ +....++++|++|+|++.. +.+..+..+++|++|+|.+..+++..+. ..+.
T Consensus 53 l~~L~~L~L~~n~~------~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 126 (455)
T 3v47_A 53 LQDLQFLKVEQQTP------GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126 (455)
T ss_dssp CTTCCEEECCCCST------TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred CccccEEECcCCcc------cceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccccc
Confidence 56799999974311 1112 2224468999999999742 2345688999999999998887754433 3357
Q ss_pred cCCcCCeEEEeccccccc-Cc---cccccccEEEee
Q 012979 201 CFPCLQVLNLVGVGGFRQ-PK---IHLLHLKSCLWT 232 (452)
Q Consensus 201 ~cP~Le~L~L~~~~g~~~-~~---l~~~sLr~l~l~ 232 (452)
.+++|++|+|.++.-... +. -.+++|+.+.+.
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 799999999976532211 21 246788888553
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.07 E-value=3e-06 Score=90.09 Aligned_cols=59 Identities=27% Similarity=0.383 Sum_probs=33.4
Q ss_pred ccCCCCcEEEeeceee-c-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 154 SCCKSLVELEVKNAWL-S-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~-d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
..+++|++|+|.+..+ . ++.+..+++|++|+|.+..+.+..- ..++.+|.|++|.|.++
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGN 335 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSC
T ss_pred ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCC
Confidence 3466777777775322 2 2345666777777776655543211 12345677777777554
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.06 E-value=5.5e-06 Score=88.05 Aligned_cols=119 Identities=18% Similarity=-0.040 Sum_probs=65.4
Q ss_pred hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-c----CCCCCCCCCCceeeeeeEeecchhHHHHh
Q 012979 125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-S----VDNLNQMPMLTKLTLEFIRLEDEDLDKVN 199 (452)
Q Consensus 125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d----~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll 199 (452)
..+.|++|++.+.... .. .....+++|+.|+|.+..+ . +..+..+++|++|+|.+-.+..-. ..+
T Consensus 326 ~l~~L~~L~l~~n~~~------~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~ 395 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGS------IS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANF 395 (606)
T ss_dssp CCSSCCEEEEESCSSC------EE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCC
T ss_pred CCCccceeeccCCcCc------cc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch--hhc
Confidence 3567888888643110 01 1233577888888886322 1 223567788888888776554322 334
Q ss_pred ccCCcCCeEEEecccccccC---c-cccccccEEEeeecC----CcceEEecCCceeEEEeee
Q 012979 200 DCFPCLQVLNLVGVGGFRQP---K-IHLLHLKSCLWTVSN----APLSLAIYAPNLVKLELRC 254 (452)
Q Consensus 200 ~~cP~Le~L~L~~~~g~~~~---~-l~~~sLr~l~l~~s~----~~~~l~~~aP~Le~L~l~~ 254 (452)
..++.|++|.|.++.-...+ . -.+++|+.+.+.-.. .+..+ -..++|++|++..
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAG 457 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTT
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh-cCCCCCCEEECCC
Confidence 56888888888654211111 1 235677777443211 11112 2567888888743
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.06 E-value=1.1e-05 Score=84.82 Aligned_cols=209 Identities=19% Similarity=0.174 Sum_probs=122.7
Q ss_pred CceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecch-hHHHHhccCCcC
Q 012979 128 ELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDE-DLDKVNDCFPCL 205 (452)
Q Consensus 128 ~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~-~L~~ll~~cP~L 205 (452)
.+++|++.+... ..+|. ..+++|++|++.+... .......+|+|++|+|.+-.+... .+...+..+|.|
T Consensus 305 ~L~~L~l~~n~~-------~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 305 GWQHLELVNCKF-------GQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp CCSEEEEESCBC-------SSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC
T ss_pred CccEEeeccCcc-------cccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCcc
Confidence 788888864321 12333 3578899999987432 222337889999999987666532 112334668999
Q ss_pred CeEEEecccccccC--ccccccccEEEeeec---CC-cceEEecCCceeEEEeeeecCCc----eeeeCCccceEEEeec
Q 012979 206 QVLNLVGVGGFRQP--KIHLLHLKSCLWTVS---NA-PLSLAIYAPNLVKLELRCVKPKS----LVLQTPLLHDFCLSLE 275 (452)
Q Consensus 206 e~L~L~~~~g~~~~--~l~~~sLr~l~l~~s---~~-~~~l~~~aP~Le~L~l~~~~~~~----l~i~~p~L~~~~l~i~ 275 (452)
++|+|.++.-...+ --.+++|+.+.+.-. .. ........++|++|++....... ..-..+.|+.+.+.-.
T Consensus 376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 99999765321111 123667888754321 11 11122367889999885432111 0112345565543211
Q ss_pred c-----cccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979 276 V-----ANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP 349 (452)
Q Consensus 276 ~-----~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~ 349 (452)
. .| ..+.++++|++|+++...+..+ ...+..+++++.|.+.-.. ... . ++..+..+|+|++|++.+
T Consensus 456 ~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~---~---~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 456 SFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKS---V---PDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp EEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSC---C---CTTTTTTCTTCCEEECCS
T ss_pred cCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCC---C---CHHHhhcccCCcEEEecC
Confidence 1 11 2456788999999986555433 3445678999998863221 111 1 235678899999999988
Q ss_pred Cchh
Q 012979 350 RAWS 353 (452)
Q Consensus 350 ~~~~ 353 (452)
..+.
T Consensus 528 N~~~ 531 (570)
T 2z63_A 528 NPWD 531 (570)
T ss_dssp SCBC
T ss_pred Cccc
Confidence 7554
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.04 E-value=1e-05 Score=83.18 Aligned_cols=186 Identities=16% Similarity=0.158 Sum_probs=109.3
Q ss_pred CCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc--c-ccccccEEE
Q 012979 157 KSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK--I-HLLHLKSCL 230 (452)
Q Consensus 157 ~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~--l-~~~sLr~l~ 230 (452)
++|+.|+|.+.. +.+..+..+++|++|+|.+-.+..-.- ..+..+++|++|+|.++.-...+. + .+++|+.+.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 589999999743 334568899999999999876654222 224669999999997653211111 2 267888885
Q ss_pred eeecCCc---ceEEecCCceeEEEeeeecC-Cce----eeeCCccceEEEeecccccc-cccccCcccEEEEeecccccc
Q 012979 231 WTVSNAP---LSLAIYAPNLVKLELRCVKP-KSL----VLQTPLLHDFCLSLEVANEI-RFQEFRNLMNLQLESSSLSSL 301 (452)
Q Consensus 231 l~~s~~~---~~l~~~aP~Le~L~l~~~~~-~~l----~i~~p~L~~~~l~i~~~~~~-~l~~~~~L~~L~l~~~~~~~~ 301 (452)
+.-.... ....-..|+|++|++..... ... .-..+.|+.+.+.-.+...+ .+.++.+|++|+++...+..+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence 5422211 11112578999999864211 110 11233555554421111111 345677888888876554332
Q ss_pred -ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 302 -INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 302 -~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
...+..++++++|.+.-. .... + .+..+..+|+|+.|++...
T Consensus 234 ~~~~~~~l~~L~~L~L~~n----~l~~--~-~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNS----QVSL--I-ERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp CGGGGTTCTTCCEEECTTS----CCCE--E-CTTTTTTCTTCCEEECCSS
T ss_pred CcccccCccCCCEEEeCCC----cCce--E-CHHHhcCCCCCCEEECCCC
Confidence 334566788888775211 1111 1 1345678899999999765
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.04 E-value=1.9e-05 Score=83.91 Aligned_cols=209 Identities=17% Similarity=0.124 Sum_probs=113.0
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceeec---CCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS---VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d---~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
+.|++|++.+..- ..+|.....+++|++|+|.+..+. +..+..+++|++|+|.+-.+....-...+..+|
T Consensus 278 ~~L~~L~l~~n~l-------~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 278 SGLQELDLTATHL-------SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTCSEEECTTSCC-------SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred cCCCEEeccCCcc-------CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 4566666643211 124444456788999999874332 235678899999999876554222222345689
Q ss_pred cCCeEEEeccccccc---C-c-cccccccEEEeeecCC----cceEEecCCceeEEEeeeecCCce-----eeeCCccce
Q 012979 204 CLQVLNLVGVGGFRQ---P-K-IHLLHLKSCLWTVSNA----PLSLAIYAPNLVKLELRCVKPKSL-----VLQTPLLHD 269 (452)
Q Consensus 204 ~Le~L~L~~~~g~~~---~-~-l~~~sLr~l~l~~s~~----~~~l~~~aP~Le~L~l~~~~~~~l-----~i~~p~L~~ 269 (452)
+|++|+|.++.-... + . -.+++|+.+.+..... ...+ ...|+|++|++........ .-..+.|+.
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT-TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh-cCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 999999976531111 1 1 2356788875532211 1112 2568888888753321100 112334555
Q ss_pred EEEeecc---cccccccccCcccEEEEeeccccc----cccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCc
Q 012979 270 FCLSLEV---ANEIRFQEFRNLMNLQLESSSLSS----LINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNL 342 (452)
Q Consensus 270 ~~l~i~~---~~~~~l~~~~~L~~L~l~~~~~~~----~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL 342 (452)
+.+.-.. .+.-.+.++++|++|+++...+.. ....+..+++++.|.+.-.. ..+ + ++..+..+|+|
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-----~-~~~~~~~l~~L 502 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSS-----I-DQHAFTSLKMM 502 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCE-----E-CTTTTTTCTTC
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCc-----c-ChhhhccccCC
Confidence 4432111 112234567788888887544322 11334567788887752111 110 1 13456778888
Q ss_pred cEEEEccC
Q 012979 343 SSLTLGPR 350 (452)
Q Consensus 343 ~~L~I~~~ 350 (452)
++|++...
T Consensus 503 ~~L~Ls~N 510 (606)
T 3t6q_A 503 NHVDLSHN 510 (606)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 88888664
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.03 E-value=9.3e-06 Score=86.23 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=10.6
Q ss_pred HHhhcCCCccEEEEccC
Q 012979 334 VLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 334 ~lL~~~PnL~~L~I~~~ 350 (452)
..+..+|+|++|+|...
T Consensus 515 ~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp GGTTTCTTCCEEECTTS
T ss_pred HHccCCCcCCEEECCCC
Confidence 45566677777777543
No 52
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.03 E-value=1.7e-05 Score=77.43 Aligned_cols=166 Identities=19% Similarity=0.141 Sum_probs=101.5
Q ss_pred hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
..+.|++|++++..- ..++. ...+++|+.|+|++..+ +.+.+..+++|++|+|.+..+.+- .. +..+|
T Consensus 61 ~l~~L~~L~L~~n~i-------~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~ 129 (308)
T 1h6u_A 61 YLNNLIGLELKDNQI-------TDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLS 129 (308)
T ss_dssp GCTTCCEEECCSSCC-------CCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCT
T ss_pred ccCCCCEEEccCCcC-------CCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCC
Confidence 357889999874321 11222 44688999999997433 445678899999999988777652 22 57799
Q ss_pred cCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccccc
Q 012979 204 CLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQ 283 (452)
Q Consensus 204 ~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~ 283 (452)
+|++|+|.++. .... .. +. ..++|+.|++..... ...+ .+.
T Consensus 130 ~L~~L~l~~n~-l~~~-----------------~~-l~-~l~~L~~L~l~~n~l-----------------~~~~--~l~ 170 (308)
T 1h6u_A 130 NLQVLYLDLNQ-ITNI-----------------SP-LA-GLTNLQYLSIGNAQV-----------------SDLT--PLA 170 (308)
T ss_dssp TCCEEECCSSC-CCCC-----------------GG-GG-GCTTCCEEECCSSCC-----------------CCCG--GGT
T ss_pred CCCEEECCCCc-cCcC-----------------cc-cc-CCCCccEEEccCCcC-----------------CCCh--hhc
Confidence 99999997642 1110 00 11 557777777743211 1111 155
Q ss_pred ccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 284 EFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 284 ~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
++++|++|+++...+..+. .+..+++++.|.+.-. ...- ++. +..+|+|+.|++...
T Consensus 171 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N----~l~~----~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNN----QISD----VSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp TCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTS----CCCB----CGG-GTTCTTCCEEEEEEE
T ss_pred CCCCCCEEECCCCccCcCh-hhcCCCCCCEEEccCC----ccCc----ccc-ccCCCCCCEEEccCC
Confidence 6778888888765444322 2556788888775221 1111 112 577888888888664
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.02 E-value=5.7e-06 Score=75.30 Aligned_cols=144 Identities=9% Similarity=0.166 Sum_probs=81.8
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCL 205 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~L 205 (452)
+.+++|.+.+..- ..++ ....+++|++|+|.++.+ +.+.+..+++|++|+|.+..+.+..... ++.+|+|
T Consensus 44 ~~L~~L~l~~n~i-------~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANINV-------TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSL 114 (197)
T ss_dssp HTCCEEEEESSCC-------SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTC
T ss_pred CCccEEeccCCCc-------cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCC
Confidence 4677888864321 1233 234577888888887533 3456778888888888887776544433 4668888
Q ss_pred CeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccccccc
Q 012979 206 QVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEF 285 (452)
Q Consensus 206 e~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~ 285 (452)
++|+|.++. ..... ...+. ..|+|+.|++..... ++..+ .+.++
T Consensus 115 ~~L~Ls~n~-i~~~~----------------~~~l~-~l~~L~~L~L~~n~~----------------i~~~~--~l~~l 158 (197)
T 4ezg_A 115 TLLDISHSA-HDDSI----------------LTKIN-TLPKVNSIDLSYNGA----------------ITDIM--PLKTL 158 (197)
T ss_dssp CEEECCSSB-CBGGG----------------HHHHT-TCSSCCEEECCSCTB----------------CCCCG--GGGGC
T ss_pred CEEEecCCc-cCcHh----------------HHHHh-hCCCCCEEEccCCCC----------------ccccH--hhcCC
Confidence 888886542 11100 00111 456777777643210 01111 34556
Q ss_pred CcccEEEEeeccccccccccccCCceeEEEE
Q 012979 286 RNLMNLQLESSSLSSLINTFPFGKTIKKLKV 316 (452)
Q Consensus 286 ~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L 316 (452)
++|+.|+++...+.. +..+..+++++.|.+
T Consensus 159 ~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 159 PELKSLNIQFDGVHD-YRGIEDFPKLNQLYA 188 (197)
T ss_dssp SSCCEEECTTBCCCC-CTTGGGCSSCCEEEE
T ss_pred CCCCEEECCCCCCcC-hHHhccCCCCCEEEe
Confidence 677777776544433 224455677777665
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.02 E-value=1.3e-05 Score=77.00 Aligned_cols=170 Identities=18% Similarity=0.115 Sum_probs=100.2
Q ss_pred CCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccccccc--Cc--cccccccE
Q 012979 156 CKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQ--PK--IHLLHLKS 228 (452)
Q Consensus 156 c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~--~~--l~~~sLr~ 228 (452)
.++|++|+|.+..+ .+..+..+++|++|+|.+..+.+-.- ..++.+|.|++|+|.++..... +. -.+++|+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 35899999997433 23457899999999998876653221 2246699999999977531211 11 22556666
Q ss_pred EEeeecC---CcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccccc-c
Q 012979 229 CLWTVSN---APLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLIN-T 304 (452)
Q Consensus 229 l~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-l 304 (452)
+.+.-.. ......-..++|++|++.... +...+.-.+.++++|++|+++...+..+.. .
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNA-----------------LQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-----------------CCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCc-----------------ccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 6443211 111111145666666663221 111122235678899999998655543332 3
Q ss_pred cccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 305 FPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 305 ~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
+..+++++.|.+.-... .+ + .+..+..+|+|++|++...
T Consensus 173 ~~~l~~L~~L~l~~n~l-~~-----~-~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRV-AH-----V-HPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp TTTCTTCCEEECCSSCC-CE-----E-CTTTTTTCTTCCEEECCSS
T ss_pred hcCccccCEEECCCCcc-cc-----c-CHhHccCcccccEeeCCCC
Confidence 56688999988632211 11 1 1355678899999999764
No 55
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.01 E-value=8.3e-06 Score=87.70 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=53.3
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
...|++|.+.+..- ..++. ...|++|+.|+|.+..+ +.+.+..+++|++|+|.+-.+.+- . -+..+|+
T Consensus 42 L~~L~~L~l~~n~i-------~~l~~-l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~ 110 (605)
T 1m9s_A 42 LNSIDQIIANNSDI-------KSVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKK 110 (605)
T ss_dssp HTTCCCCBCTTCCC-------CCCTT-GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTT
T ss_pred CCCCCEEECcCCCC-------CCChH-HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCC
Confidence 46788888864321 12232 34688999999987433 444578899999999988777652 2 2577999
Q ss_pred CCeEEEecc
Q 012979 205 LQVLNLVGV 213 (452)
Q Consensus 205 Le~L~L~~~ 213 (452)
|++|+|.++
T Consensus 111 L~~L~Ls~N 119 (605)
T 1m9s_A 111 LKSLSLEHN 119 (605)
T ss_dssp CCEEECTTS
T ss_pred CCEEEecCC
Confidence 999999765
No 56
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.97 E-value=7.5e-07 Score=89.63 Aligned_cols=88 Identities=17% Similarity=0.082 Sum_probs=59.6
Q ss_pred hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeec------CCC-------CCCCCCCceeeeeeEeec
Q 012979 125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS------VDN-------LNQMPMLTKLTLEFIRLE 191 (452)
Q Consensus 125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d------~~~-------l~~fp~Lr~L~L~~v~i~ 191 (452)
..+.|++|+|++..... .....++.....+++|++|+|.++.+. +.+ +..+++|++|+|.+..+.
T Consensus 30 ~~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGT--EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HCSCCCEEECTTSEECH--HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred cCCCccEEECCCCCCCH--HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 35789999997432110 001123333446899999999875332 112 267899999999998888
Q ss_pred ch---hHHHHhccCCcCCeEEEeccc
Q 012979 192 DE---DLDKVNDCFPCLQVLNLVGVG 214 (452)
Q Consensus 192 ~~---~L~~ll~~cP~Le~L~L~~~~ 214 (452)
+. .+...+..||+|++|+|.+|.
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 75 355567889999999997653
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.96 E-value=1.2e-05 Score=86.64 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=10.6
Q ss_pred cCCCccEEEEccCchhh
Q 012979 338 VFPNLSSLTLGPRAWSA 354 (452)
Q Consensus 338 ~~PnL~~L~I~~~~~~~ 354 (452)
.+|+|++|++.+..|.+
T Consensus 607 ~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 607 AFRNLTELDMRFNPFDC 623 (680)
T ss_dssp HHTTCSEEECTTCCCCB
T ss_pred cccccCEEEccCCCccc
Confidence 56677777776655543
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.94 E-value=1.1e-05 Score=78.07 Aligned_cols=191 Identities=16% Similarity=0.068 Sum_probs=96.7
Q ss_pred CCceEEEeeecccccccccccccce-ecccCCCCcEEEeeceeec-----CCCCCCCCCCceeeeeeEeecchhHHHHhc
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNAWLS-----VDNLNQMPMLTKLTLEFIRLEDEDLDKVND 200 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~~~d-----~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~ 200 (452)
+.+++|++++..- ..+|. ....+++|++|+|.+..+. +.....+++|++|+|.+..+.. +..-+.
T Consensus 28 ~~l~~L~L~~n~l-------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNKL-------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFL 98 (306)
T ss_dssp TTCCEEECCSSCC-------CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEE
T ss_pred CCCCEEECCCCcc-------CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcC
Confidence 5677887764321 11222 1235677888888763221 1233457888888887665542 111245
Q ss_pred cCCcCCeEEEecccccccC---c-cccccccEEEeeecCC---cceEEecCCceeEEEeeeecCCceeeeCCccceEEEe
Q 012979 201 CFPCLQVLNLVGVGGFRQP---K-IHLLHLKSCLWTVSNA---PLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLS 273 (452)
Q Consensus 201 ~cP~Le~L~L~~~~g~~~~---~-l~~~sLr~l~l~~s~~---~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~ 273 (452)
.+++|++|+|.++.-...+ . -.+++|+.+.+.-... .....-..++|++|.+....
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----------------- 161 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS----------------- 161 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-----------------
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-----------------
Confidence 6788888888654211111 1 2245566553321110 00001134556666553211
Q ss_pred ecc-cccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 274 LEV-ANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 274 i~~-~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
+.. .....+.++++|++|+++...+..+ ...+..+++++.|.+.-.. ... + .+..+..+|+|+.|++...
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-----~-~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFS-----L-DTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSB-----C-CSGGGTTCTTCCEEECTTS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCc-----c-ChhhccCcccCCEeECCCC
Confidence 000 0012345677888888876544433 2345567888887753211 111 1 1234577888999988654
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.93 E-value=5.2e-05 Score=84.35 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=32.9
Q ss_pred cccCCCCcEEEeeceeec---CCC--CCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 153 SSCCKSLVELEVKNAWLS---VDN--LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 153 ~~~c~~L~~L~L~~~~~d---~~~--l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
..++++|++|+|.+..+. +.. +..+++|++|+|.+-.+........++.+++|++|+|.++
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 335666666666653221 111 5566666666666655544333333455666666666543
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.93 E-value=2.2e-05 Score=76.85 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=125.3
Q ss_pred cccCCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEE
Q 012979 153 SSCCKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSC 229 (452)
Q Consensus 153 ~~~c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l 229 (452)
...+++|++|+|.+..+ +. ..+..+++|++|+|.+-.+.+.. . +..+|+|++|+|.++. .... -..++|+.+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l-~~~~~L~~L 104 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQEL-LVGPSIETL 104 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEE-EECTTCCEE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-cccc-cCCCCcCEE
Confidence 34577999999997543 22 24789999999999887665321 1 6779999999997653 2111 124788888
Q ss_pred EeeecCCcceEEecCCceeEEEeeeecCCce----eeeCCccceEEEeeccc----ccccccccCcccEEEEeecccccc
Q 012979 230 LWTVSNAPLSLAIYAPNLVKLELRCVKPKSL----VLQTPLLHDFCLSLEVA----NEIRFQEFRNLMNLQLESSSLSSL 301 (452)
Q Consensus 230 ~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l----~i~~p~L~~~~l~i~~~----~~~~l~~~~~L~~L~l~~~~~~~~ 301 (452)
.+.............++|++|++........ .-..+.|+.+.+.-... +.....++.+|++|+++...+..+
T Consensus 105 ~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp ECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred ECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 5543333333334568899999864432211 01123444443321111 111123567888888875444332
Q ss_pred ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhhhhhccccCccccccccccceeEEEEEe
Q 012979 302 INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLV 381 (452)
Q Consensus 302 ~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~lk~lv~~~~ 381 (452)
.....+++++.|.+.-. .... ++.-+..+|+|+.|++.......+ .. .....+.++.+.+.
T Consensus 185 -~~~~~l~~L~~L~Ls~N----~l~~----l~~~~~~l~~L~~L~L~~N~l~~l----~~----~~~~l~~L~~L~l~-- 245 (317)
T 3o53_A 185 -KGQVVFAKLKTLDLSSN----KLAF----MGPEFQSAAGVTWISLRNNKLVLI----EK----ALRFSQNLEHFDLR-- 245 (317)
T ss_dssp -ECCCCCTTCCEEECCSS----CCCE----ECGGGGGGTTCSEEECTTSCCCEE----CT----TCCCCTTCCEEECT--
T ss_pred -ccccccccCCEEECCCC----cCCc----chhhhcccCcccEEECcCCcccch----hh----HhhcCCCCCEEEcc--
Confidence 22224678888775321 1111 122366789999999966522211 10 01123566665332
Q ss_pred ecCCcchhHHHHHHHhcccccccEEE
Q 012979 382 VDDISVTRSFIFAIMNICSNLSDMAL 407 (452)
Q Consensus 382 ~~~~~~~~~fl~~ll~~a~~L~~m~i 407 (452)
+| .-....+...+...+.|+.+.+
T Consensus 246 -~N-~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 246 -GN-GFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp -TC-CCBHHHHHHHHHTCHHHHHHHH
T ss_pred -CC-CccCcCHHHHHhccccceEEEC
Confidence 32 3333345555566666665544
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.92 E-value=2.1e-05 Score=77.23 Aligned_cols=207 Identities=14% Similarity=0.105 Sum_probs=102.1
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
+.++.|++.+..- ....+.....+++|++|+|.+..+ .+..+..+++|++|+|.+-.+.. +.. ...+
T Consensus 54 ~~l~~L~l~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~ 123 (332)
T 2ft3_A 54 PDTTLLDLQNNDI------SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPS 123 (332)
T ss_dssp TTCCEEECCSSCC------CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCT
T ss_pred CCCeEEECCCCcC------CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccc
Confidence 5677777763311 011121234577788888876322 23456777888888887665542 111 1127
Q ss_pred cCCeEEEecccccccCc---cccccccEEEeeecCCc----ceEEecCCceeEEEeeeecCCceeee-CCccceEEEee-
Q 012979 204 CLQVLNLVGVGGFRQPK---IHLLHLKSCLWTVSNAP----LSLAIYAPNLVKLELRCVKPKSLVLQ-TPLLHDFCLSL- 274 (452)
Q Consensus 204 ~Le~L~L~~~~g~~~~~---l~~~sLr~l~l~~s~~~----~~l~~~aP~Le~L~l~~~~~~~l~i~-~p~L~~~~l~i- 274 (452)
.|++|.|.++.-...+. -.+++|+.+.+.-.... ..-.....+|+.|.+.......+-.. .+.|+.+.+.-
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n 203 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN 203 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC
Confidence 78888886543111111 12566666644321110 00011112566666543321111000 12344433321
Q ss_pred --cccccccccccCcccEEEEeeccccccc-cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCc
Q 012979 275 --EVANEIRFQEFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRA 351 (452)
Q Consensus 275 --~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~ 351 (452)
...+...+.++.+|+.|+++...+..+. ..+..+++++.|.+.-.. .. .++.-+..+|+|++|++....
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~----l~----~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK----LS----RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC----CC----BCCTTGGGCTTCCEEECCSSC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc----Ce----ecChhhhcCccCCEEECCCCC
Confidence 1112223556778888888754443322 234567888887753221 11 123446788899999887653
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.90 E-value=3.9e-05 Score=80.30 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=32.7
Q ss_pred ccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCc
Q 012979 284 EFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRA 351 (452)
Q Consensus 284 ~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~ 351 (452)
++++|++|+++...+..+.. ....++++.|.+.-. ..... ++..+..+++|+.|++.+..
T Consensus 449 ~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N----~l~~~---~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 449 FLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRN----QLKSV---PDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSS----CCCCC---CTTGGGGCTTCCEEECCSSC
T ss_pred cCChhcEEECCCCccCcCCC-cccCccCCEEecCCC----ccCCc---CHHHHhcCcccCEEEecCCC
Confidence 56677777777544433222 234667777665321 11111 23456677777777776553
No 63
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.90 E-value=8.4e-06 Score=81.89 Aligned_cols=122 Identities=11% Similarity=0.135 Sum_probs=71.8
Q ss_pred HHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeeccccccccc--ccc---
Q 012979 74 LENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRK--SEV--- 148 (452)
Q Consensus 74 v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~--~~~--- 148 (452)
+...+...+.++.|+|..+ .+ .+. .+..+...+. ..+.|++|.|++..... ... +..
T Consensus 24 l~~~l~~~~~L~~L~L~~n------~i-------~~~---~~~~l~~~l~-~~~~L~~L~Ls~~~~~~-l~~~~~~~~~~ 85 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGN------TI-------GTE---AARWLSENIA-SKKDLEIAEFSDIFTGR-VKDEIPEALRL 85 (386)
T ss_dssp TSHHHHHCSCCCEEECTTS------EE-------CHH---HHHHHHHTTT-TCTTCCEEECCSCCTTS-CGGGSHHHHHH
T ss_pred HHHHHhcCCCccEEECCCC------CC-------CHH---HHHHHHHHHH-hCCCccEEeCcccccCc-cccchhHHHHH
Confidence 4445666788999988732 11 000 0112222221 25789999997531100 000 001
Q ss_pred cceecccCCCCcEEEeeceeecCC-------CCCCCCCCceeeeeeEeecch---hHHHHhccC---------CcCCeEE
Q 012979 149 LAFISSCCKSLVELEVKNAWLSVD-------NLNQMPMLTKLTLEFIRLEDE---DLDKVNDCF---------PCLQVLN 209 (452)
Q Consensus 149 L~~~~~~c~~L~~L~L~~~~~d~~-------~l~~fp~Lr~L~L~~v~i~~~---~L~~ll~~c---------P~Le~L~ 209 (452)
+......|++|++|+|++..+... .+..+++|++|+|.+..+.+. .+...+..+ |.|++|+
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 111224688999999997544332 246789999999998888643 444545555 9999999
Q ss_pred Eecc
Q 012979 210 LVGV 213 (452)
Q Consensus 210 L~~~ 213 (452)
|.++
T Consensus 166 L~~n 169 (386)
T 2ca6_A 166 CGRN 169 (386)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9765
No 64
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.89 E-value=1.8e-05 Score=85.23 Aligned_cols=205 Identities=11% Similarity=0.043 Sum_probs=102.5
Q ss_pred CCceEEEeeecccccccccccccce--ecccCCCCcEEEeece-ee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAF--ISSCCKSLVELEVKNA-WL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~--~~~~c~~L~~L~L~~~-~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
+.|++|++.+... . .+|. ....+++|+.|+|.+. +- ..+.+..+++|++|+|.+-.+. .+..-+..+
T Consensus 305 ~~L~~L~L~~n~l------~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l 375 (636)
T 4eco_A 305 EKIQIIYIGYNNL------K-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGF 375 (636)
T ss_dssp GTCCEEECCSSCC------S-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEE
T ss_pred CCCCEEECCCCcC------C-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhh
Confidence 5566666653211 1 3444 3446777888888763 22 2345667778888888766655 332335667
Q ss_pred Cc-CCeEEEecccccccCc----cccccccEEEeeecCC----cceEE------ecCCceeEEEeeeecCCce----eee
Q 012979 203 PC-LQVLNLVGVGGFRQPK----IHLLHLKSCLWTVSNA----PLSLA------IYAPNLVKLELRCVKPKSL----VLQ 263 (452)
Q Consensus 203 P~-Le~L~L~~~~g~~~~~----l~~~sLr~l~l~~s~~----~~~l~------~~aP~Le~L~l~~~~~~~l----~i~ 263 (452)
+. |++|+|.++.-...+. ..+++|+.+.+..... +..+. ...++|++|++.......+ .-.
T Consensus 376 ~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~ 455 (636)
T 4eco_A 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455 (636)
T ss_dssp CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred cccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence 88 8888886653222222 1233567664432211 11111 1456788888754332211 001
Q ss_pred CCccceEEEee---ccccccccc-------ccCcccEEEEeeccccccccccc--cCCceeEEEEEeccCCCCccccccC
Q 012979 264 TPLLHDFCLSL---EVANEIRFQ-------EFRNLMNLQLESSSLSSLINTFP--FGKTIKKLKVELLKPGEPIGMKNLN 331 (452)
Q Consensus 264 ~p~L~~~~l~i---~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~l~~--~~p~lkkL~L~~~~~~~~~~~l~~d 331 (452)
.+.|+.+.+.- ...|.-.+. ++.+|++|+++...+..+...+. .+++++.|.+.-... ..
T Consensus 456 l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~------- 527 (636)
T 4eco_A 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SK------- 527 (636)
T ss_dssp TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC-SS-------
T ss_pred CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC-CC-------
Confidence 34555554421 111211111 12278888887654443333333 577788776532110 00
Q ss_pred hhHHhhcCCCccEEEEc
Q 012979 332 LGVLFDVFPNLSSLTLG 348 (452)
Q Consensus 332 l~~lL~~~PnL~~L~I~ 348 (452)
++.-+..+++|++|++.
T Consensus 528 ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CCCGGGGCSSCCEEECC
T ss_pred cChhhhcCCCCCEEECC
Confidence 13334456777777763
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.88 E-value=4.1e-05 Score=82.48 Aligned_cols=15 Identities=27% Similarity=0.111 Sum_probs=9.8
Q ss_pred hccCCcCCeEEEecc
Q 012979 199 NDCFPCLQVLNLVGV 213 (452)
Q Consensus 199 l~~cP~Le~L~L~~~ 213 (452)
+..++.|+.|+|.++
T Consensus 401 ~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLN 415 (680)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hhCCCCCCEEeCCCC
Confidence 345777777777554
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.88 E-value=1.5e-05 Score=76.26 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=89.8
Q ss_pred hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCC--CCCCCCCCceeeeeeEeecchhHHHHhcc
Q 012979 125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVD--NLNQMPMLTKLTLEFIRLEDEDLDKVNDC 201 (452)
Q Consensus 125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~--~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~ 201 (452)
..+.|++|++.+... . .++ ....+++|++|+|.+..+ +.+ .+..+++|++|+|.+-.+..-. ...+..
T Consensus 61 ~l~~L~~L~l~~n~l----~---~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~ 131 (272)
T 3rfs_A 61 YLPNVRYLALGGNKL----H---DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDK 131 (272)
T ss_dssp GCTTCCEEECTTSCC----C---CCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTT
T ss_pred cCCCCcEEECCCCCC----C---Cch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-HHHhcc
Confidence 368899999974321 1 123 234689999999997433 222 3688999999999887776322 223567
Q ss_pred CCcCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccc
Q 012979 202 FPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIR 281 (452)
Q Consensus 202 cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~ 281 (452)
+|.|++|+|.++. .... .....-..++|+.|++...... ..+.-.
T Consensus 132 l~~L~~L~L~~n~-l~~~-----------------~~~~~~~l~~L~~L~l~~n~l~-----------------~~~~~~ 176 (272)
T 3rfs_A 132 LTNLTYLNLAHNQ-LQSL-----------------PKGVFDKLTNLTELDLSYNQLQ-----------------SLPEGV 176 (272)
T ss_dssp CTTCCEEECCSSC-CCCC-----------------CTTTTTTCTTCCEEECCSSCCC-----------------CCCTTT
T ss_pred CCCCCEEECCCCc-cCcc-----------------CHHHhccCccCCEEECCCCCcC-----------------ccCHHH
Confidence 9999999997652 1110 0011115678888887433211 111123
Q ss_pred ccccCcccEEEEeeccccccc-cccccCCceeEEEE
Q 012979 282 FQEFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKV 316 (452)
Q Consensus 282 l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L 316 (452)
+.++++|+.|+++...+..+. ..+..+++++.|.+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 456778888888765443322 23456788888775
No 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.88 E-value=1.7e-05 Score=74.93 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=84.3
Q ss_pred CCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeee
Q 012979 157 KSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTV 233 (452)
Q Consensus 157 ~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~ 233 (452)
+.|++|+|.+..+ . +..+..+++|++|+|.+-.+.+-. ...+..++.|++|+|.++. ...
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~--------------- 97 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQ-LAS--------------- 97 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCC---------------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCc-ccc---------------
Confidence 4678888876322 2 234677788888888776665321 1223557888888886532 111
Q ss_pred cCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccccc-ccccCCcee
Q 012979 234 SNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLIN-TFPFGKTIK 312 (452)
Q Consensus 234 s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-l~~~~p~lk 312 (452)
......-..++|++|++..... ...+.-.+.++.+|++|+++...+..+.. .+..+++++
T Consensus 98 --~~~~~~~~l~~L~~L~L~~N~l-----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 98 --LPLGVFDHLTQLDKLYLGGNQL-----------------KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCC-----------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred --cChhHhcccCCCCEEEcCCCcC-----------------CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 0000111457777777743211 11111234567778888887654443322 345677888
Q ss_pred EEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCch
Q 012979 313 KLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAW 352 (452)
Q Consensus 313 kL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~ 352 (452)
.|.+.-.. ...+ ++..+..+++|+.|++.+..|
T Consensus 159 ~L~L~~N~----l~~~---~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 159 TLSLSTNQ----LQSV---PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp EEECCSSC----CSCC---CTTTTTTCTTCCEEECCSCCB
T ss_pred EEECCCCc----CCcc---CHHHHhCCCCCCEEEeeCCce
Confidence 87753221 1111 124567788888888876644
No 68
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.87 E-value=8.2e-05 Score=77.45 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=33.1
Q ss_pred cCCCCcEEEeeceeec----CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcC--CeEEEecc
Q 012979 155 CCKSLVELEVKNAWLS----VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCL--QVLNLVGV 213 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~d----~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~L--e~L~L~~~ 213 (452)
.+++|++|+|++..+. +..++.+++|++|+|.+-.+.+.++ ..++.| ++|.|.++
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV----LPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGG----GGGTTSCEEEEEEEEC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhc----cccccceeeEEEeecc
Confidence 4667777777753321 1245667777777777766665443 335666 77777554
No 69
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=2.7e-05 Score=87.19 Aligned_cols=206 Identities=12% Similarity=0.063 Sum_probs=104.4
Q ss_pred CCceEEEeeecccccccccccccce--ecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAF--ISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~--~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
+.|++|++++... . .+|. ....+++|+.|+|.+..+ ..+.+..+++|++|+|.+-.+. .+..-+..++
T Consensus 548 ~~L~~L~Ls~N~L------~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~ 618 (876)
T 4ecn_A 548 PKIQIFYMGYNNL------E-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFT 618 (876)
T ss_dssp TTCCEEECCSSCC------C-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEEC
T ss_pred CCccEEEeeCCcC------C-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhcc
Confidence 4666666653211 1 3444 344677788888876322 3346677788888888776665 3333356677
Q ss_pred c-CCeEEEecccccccCc----cccccccEEEeeecCC---cceE-----EecCCceeEEEeeeecCCce----eeeCCc
Q 012979 204 C-LQVLNLVGVGGFRQPK----IHLLHLKSCLWTVSNA---PLSL-----AIYAPNLVKLELRCVKPKSL----VLQTPL 266 (452)
Q Consensus 204 ~-Le~L~L~~~~g~~~~~----l~~~sLr~l~l~~s~~---~~~l-----~~~aP~Le~L~l~~~~~~~l----~i~~p~ 266 (452)
. |++|+|.++.-...+. ...++|+.+.+.-... ...+ ....++|+.|++.......+ .-..+.
T Consensus 619 ~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~ 698 (876)
T 4ecn_A 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698 (876)
T ss_dssp TTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCC
T ss_pred ccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCC
Confidence 7 8888886653222222 1123466664432111 0000 11335788888754322211 002345
Q ss_pred cceEEEee---ccccccccc-------ccCcccEEEEeeccccccccccc--cCCceeEEEEEeccCCCCccccccChhH
Q 012979 267 LHDFCLSL---EVANEIRFQ-------EFRNLMNLQLESSSLSSLINTFP--FGKTIKKLKVELLKPGEPIGMKNLNLGV 334 (452)
Q Consensus 267 L~~~~l~i---~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~l~~--~~p~lkkL~L~~~~~~~~~~~l~~dl~~ 334 (452)
|+.+.+.- ...|.-.+. ++++|++|+++...+..+...+. .+++|+.|.+.-... .. ++.
T Consensus 699 L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~-------lp~ 770 (876)
T 4ecn_A 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SS-------FPT 770 (876)
T ss_dssp CSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCC-SS-------CCC
T ss_pred CCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCC-Cc-------cch
Confidence 55554421 111221111 23378888887655444333333 577888877532211 11 133
Q ss_pred HhhcCCCccEEEEcc
Q 012979 335 LFDVFPNLSSLTLGP 349 (452)
Q Consensus 335 lL~~~PnL~~L~I~~ 349 (452)
-+..+|+|+.|++..
T Consensus 771 ~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRH 785 (876)
T ss_dssp GGGGCTTCCEEECCC
T ss_pred hhhcCCCCCEEECCC
Confidence 344667777777743
No 70
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.86 E-value=6.6e-05 Score=80.85 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=78.0
Q ss_pred cCCceEEEeeecccccc-ccc---cc-------ccceecc--cCCCCcEEEeecee-ec--CCCCCCCCCCceeeeeeEe
Q 012979 126 CEELKFLSISDCWFQSC-WRK---SE-------VLAFISS--CCKSLVELEVKNAW-LS--VDNLNQMPMLTKLTLEFIR 189 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~-~~~---~~-------~L~~~~~--~c~~L~~L~L~~~~-~d--~~~l~~fp~Lr~L~L~~v~ 189 (452)
.+.|++|+|++...... ... +. .+|.... .+++|++|+|.++. .. +..+..+++|++|+|.+-.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 57899999974321000 000 00 1566665 79999999999742 22 4468899999999999887
Q ss_pred -ecc----hhHHHH--hccCCcCCeEEEecccccccCc---c-ccccccEEEeeec----CCcceEEecCCceeEEEeee
Q 012979 190 -LED----EDLDKV--NDCFPCLQVLNLVGVGGFRQPK---I-HLLHLKSCLWTVS----NAPLSLAIYAPNLVKLELRC 254 (452)
Q Consensus 190 -i~~----~~L~~l--l~~cP~Le~L~L~~~~g~~~~~---l-~~~sLr~l~l~~s----~~~~~l~~~aP~Le~L~l~~ 254 (452)
+++ ..+..+ ...+++|++|.|.++.-...+. + .+++|+.+.+.-. ..+ .+. ..++|++|++..
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCC
Confidence 654 344442 2446999999997764222332 2 3567888755321 111 222 557788888753
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.86 E-value=0.0002 Score=75.56 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=16.0
Q ss_pred ccCcccEEEEeeccccc-cccccccCCceeEEEE
Q 012979 284 EFRNLMNLQLESSSLSS-LINTFPFGKTIKKLKV 316 (452)
Q Consensus 284 ~~~~L~~L~l~~~~~~~-~~~l~~~~p~lkkL~L 316 (452)
++.+|+.|+++...+.. +...+..+++++.|.+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 384 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence 44566666665433222 1223345566666554
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.85 E-value=4e-05 Score=74.25 Aligned_cols=77 Identities=18% Similarity=0.114 Sum_probs=57.1
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
.+.|++|++++..- . .++. ...+++|+.|+|.+..+ +.+.+..+++|++|+|.+-.+.+- . -+..+|+
T Consensus 67 l~~L~~L~L~~n~l----~---~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--~-~l~~l~~ 135 (291)
T 1h6t_A 67 LPNVTKLFLNGNKL----T---DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--N-GLVHLPQ 135 (291)
T ss_dssp CTTCCEEECCSSCC----C---CCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC--G-GGGGCTT
T ss_pred CCCCCEEEccCCcc----C---CCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC--h-hhcCCCC
Confidence 57899999974321 1 1222 45789999999997433 456688999999999998877652 2 2567999
Q ss_pred CCeEEEecc
Q 012979 205 LQVLNLVGV 213 (452)
Q Consensus 205 Le~L~L~~~ 213 (452)
|++|+|.++
T Consensus 136 L~~L~l~~n 144 (291)
T 1h6t_A 136 LESLYLGNN 144 (291)
T ss_dssp CCEEECCSS
T ss_pred CCEEEccCC
Confidence 999999765
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.84 E-value=3.6e-05 Score=73.40 Aligned_cols=167 Identities=19% Similarity=0.135 Sum_probs=86.9
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
..+++|++++..- ....+....++++|++|+|.+..+ .. ..+..+++|++|+|.+-.+..-.- ..+..++
T Consensus 37 ~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKL------SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLV 109 (270)
T ss_dssp TTCSEEECCSSCC------SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCS
T ss_pred CCCCEEECcCCCC------CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHccccc
Confidence 4677777763311 011111234577888888876332 22 224667888888887665543211 2345678
Q ss_pred cCCeEEEecccccccCc---cccccccEEEeeecC---CcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccc
Q 012979 204 CLQVLNLVGVGGFRQPK---IHLLHLKSCLWTVSN---APLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVA 277 (452)
Q Consensus 204 ~Le~L~L~~~~g~~~~~---l~~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~ 277 (452)
+|++|.|.++.-...+. -.+++|+.+.+.... ......-..|+|++|.+.... +...
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----------------l~~~ 172 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-----------------LKRV 172 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----------------CSCC
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-----------------CcEe
Confidence 88888886542111111 124555555333211 111111134556665553211 1111
Q ss_pred ccccccccCcccEEEEeeccccccc-cccccCCceeEEEEE
Q 012979 278 NEIRFQEFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVE 317 (452)
Q Consensus 278 ~~~~l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~ 317 (452)
+.-.+.++++|+.|+++...+..+. ..+..+++++.|.+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 2224567889999999865544332 235668899998864
No 74
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.84 E-value=2.9e-05 Score=76.29 Aligned_cols=214 Identities=15% Similarity=0.078 Sum_probs=117.2
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeec-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
...|++|++.+..- ....|.....+++|++|+|.+..+. .+. ..+++|++|+|.+..+..-. ...+..+++
T Consensus 77 l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~ 148 (332)
T 2ft3_A 77 LQHLYALVLVNNKI------SKIHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVP-KGVFSGLRN 148 (332)
T ss_dssp CTTCCEEECCSSCC------CEECGGGSTTCTTCCEEECCSSCCCSCCS-SCCTTCCEEECCSSCCCCCC-SGGGSSCSS
T ss_pred CCCCcEEECCCCcc------CccCHhHhhCcCCCCEEECCCCcCCccCc-cccccCCEEECCCCccCccC-HhHhCCCcc
Confidence 46789999874321 1122333456889999999974332 222 23489999999887665322 123567999
Q ss_pred CCeEEEecccc----cccCccccccccEEEeeec---CCcceEEecCCceeEEEeeeecCCce----eeeCCccceEEEe
Q 012979 205 LQVLNLVGVGG----FRQPKIHLLHLKSCLWTVS---NAPLSLAIYAPNLVKLELRCVKPKSL----VLQTPLLHDFCLS 273 (452)
Q Consensus 205 Le~L~L~~~~g----~~~~~l~~~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~~~~~~l----~i~~p~L~~~~l~ 273 (452)
|++|.+.++.- .....+...+|+.+.+.-. ..+.. ..++|+.|++........ .-..+.|+.+.+.
T Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 99999976531 1111122225666533211 11111 126888888754322111 1123355554432
Q ss_pred e---cccccccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCC-CCccccccChhHHhhcCCCccEEEEcc
Q 012979 274 L---EVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPG-EPIGMKNLNLGVLFDVFPNLSSLTLGP 349 (452)
Q Consensus 274 i---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~-~~~~~l~~dl~~lL~~~PnL~~L~I~~ 349 (452)
- ...+.-.+.++++|++|+++...+..+...+..+++++.|.+.-.... .....+ ....+...+++|++|++.+
T Consensus 226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~--~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 226 HNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF--CPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS--SCSSCCSSSCCBSEEECCS
T ss_pred CCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHc--cccccccccccccceEeec
Confidence 1 112222456788999999987665554444667899999887432111 111111 0001122378899999977
Q ss_pred Cch
Q 012979 350 RAW 352 (452)
Q Consensus 350 ~~~ 352 (452)
..+
T Consensus 304 N~~ 306 (332)
T 2ft3_A 304 NPV 306 (332)
T ss_dssp SSS
T ss_pred Ccc
Confidence 644
No 75
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.79 E-value=5.7e-05 Score=83.13 Aligned_cols=217 Identities=16% Similarity=0.040 Sum_probs=121.1
Q ss_pred hhhcchhh--cCCceEEEeeecccccccccccc---cceecccCCCCcEEEeece--eecCCCCCCCCCCceeeeeeEee
Q 012979 118 VKNWLPWV--CEELKFLSISDCWFQSCWRKSEV---LAFISSCCKSLVELEVKNA--WLSVDNLNQMPMLTKLTLEFIRL 190 (452)
Q Consensus 118 l~~WL~~~--~~~L~eL~l~~~~~~~~~~~~~~---L~~~~~~c~~L~~L~L~~~--~~d~~~l~~fp~Lr~L~L~~v~i 190 (452)
...|-... ...|+.|+|...+- ... ++.....++.|+.+++... .+.++.++.+++|++|+|.+..+
T Consensus 39 ~C~w~gv~C~~~~v~~L~L~~~~l------~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l 112 (768)
T 3rgz_A 39 PCTFDGVTCRDDKVTSIDLSSKPL------NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112 (768)
T ss_dssp GGGSTTEEEETTEEEEEECTTSCC------CEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEE
T ss_pred CcCCcceEECCCcEEEEECCCCCc------CCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcC
Confidence 34675322 25688888864321 111 3333445678888888752 22345788899999999988777
Q ss_pred cchhHH-HHhccCCcCCeEEEeccccc-ccC-c--cccccccEEEeeecCCcc----e--EEecCCceeEEEeeeecCCc
Q 012979 191 EDEDLD-KVNDCFPCLQVLNLVGVGGF-RQP-K--IHLLHLKSCLWTVSNAPL----S--LAIYAPNLVKLELRCVKPKS 259 (452)
Q Consensus 191 ~~~~L~-~ll~~cP~Le~L~L~~~~g~-~~~-~--l~~~sLr~l~l~~s~~~~----~--l~~~aP~Le~L~l~~~~~~~ 259 (452)
.+.--. .-+..|++|++|+|.++.-. ..+ . -.+++|+++.+....... . ..-..++|++|++.......
T Consensus 113 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 192 (768)
T 3rgz_A 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192 (768)
T ss_dssp EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES
T ss_pred CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc
Confidence 642211 13567999999999765311 111 1 246788888553222110 0 02256888888875432110
Q ss_pred e--eeeCCccceEEEeeccc---ccccccccCcccEEEEeecccc-ccccccccCCceeEEEEEeccCCCCccccccChh
Q 012979 260 L--VLQTPLLHDFCLSLEVA---NEIRFQEFRNLMNLQLESSSLS-SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLG 333 (452)
Q Consensus 260 l--~i~~p~L~~~~l~i~~~---~~~~l~~~~~L~~L~l~~~~~~-~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~ 333 (452)
. .-..+.|+.+.+.-.+. .. .+.++++|++|+++...+. .+...+..+++++.|.+.-...... ++
T Consensus 193 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-------~~ 264 (768)
T 3rgz_A 193 DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-------IP 264 (768)
T ss_dssp CCBCTTCTTCCEEECCSSCCCSCCC-BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEES-------CC
T ss_pred cCCcccCCcCCEEECcCCcCCCCCc-ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCc-------cC
Confidence 0 01233555544431111 11 2667888999998865443 2334456788888887632211110 11
Q ss_pred HHhhcCCCccEEEEccC
Q 012979 334 VLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 334 ~lL~~~PnL~~L~I~~~ 350 (452)
.. .+++|++|++...
T Consensus 265 ~~--~l~~L~~L~L~~n 279 (768)
T 3rgz_A 265 PL--PLKSLQYLSLAEN 279 (768)
T ss_dssp CC--CCTTCCEEECCSS
T ss_pred cc--ccCCCCEEECcCC
Confidence 12 7889999998654
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.77 E-value=3.7e-05 Score=80.25 Aligned_cols=181 Identities=15% Similarity=0.095 Sum_probs=104.5
Q ss_pred cCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEecccccccCccccccccEEE
Q 012979 155 CCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCL 230 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~ 230 (452)
.+++|+.|+|.+..+ + +..+..+++|++|+|.+-.+.+ .. +..+|+|++|+|.++. .... ...++|+.+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l-~~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQEL-LVGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EEEE-EECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CCCC-CCCCCcCEEE
Confidence 566899999997433 2 2357899999999998877653 22 6789999999997653 2111 1237888885
Q ss_pred eeecCCcceEEecCCceeEEEeeeecCCce----eeeCCccceEEEeeccc---ccccc-cccCcccEEEEeeccccccc
Q 012979 231 WTVSNAPLSLAIYAPNLVKLELRCVKPKSL----VLQTPLLHDFCLSLEVA---NEIRF-QEFRNLMNLQLESSSLSSLI 302 (452)
Q Consensus 231 l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l----~i~~p~L~~~~l~i~~~---~~~~l-~~~~~L~~L~l~~~~~~~~~ 302 (452)
+.-...........|+|++|++........ .-..+.|+.+.+.-... +...+ .++++|+.|+++...+..+
T Consensus 106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 543322222333568899999865432211 01123444443321111 11122 2567888888876554432
Q ss_pred cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 303 NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 303 ~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
.....+++++.|.+.-.. ... ++.-+..+|+|+.|++...
T Consensus 185 ~~~~~l~~L~~L~Ls~N~----l~~----~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 185 KGQVVFAKLKTLDLSSNK----LAF----MGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp ECCCCCTTCCEEECCSSC----CCE----ECGGGGGGTTCSEEECTTS
T ss_pred cccccCCCCCEEECCCCC----CCC----CCHhHcCCCCccEEEecCC
Confidence 222347778887753221 111 1222567788888888654
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.75 E-value=4.7e-05 Score=74.26 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=8.8
Q ss_pred hhcCCCccEEEEccC
Q 012979 336 FDVFPNLSSLTLGPR 350 (452)
Q Consensus 336 L~~~PnL~~L~I~~~ 350 (452)
+..+|+|++|++.+.
T Consensus 292 ~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 292 PDELPQVGNLSLKGN 306 (312)
T ss_dssp TTTSCEEEEEECTTC
T ss_pred HhhCCCCCEEeccCC
Confidence 455666666666443
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.73 E-value=3e-05 Score=83.30 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=57.5
Q ss_pred hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
..+.|++|+|++... . .++. ...+++|+.|+|.+..+ +.+.+..+++|++|+|.+-.+.+ +.. +..||
T Consensus 63 ~l~~L~~L~Ls~N~l------~-~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~--l~~-l~~l~ 131 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKL------T-DIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD--ING-LVHLP 131 (605)
T ss_dssp GCTTCCEEECTTSCC------C-CCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC--CGG-GGGCT
T ss_pred cCCCCCEEEeeCCCC------C-CChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC--Ccc-ccCCC
Confidence 368899999974321 1 1222 44789999999997544 56678899999999999877765 222 56799
Q ss_pred cCCeEEEecc
Q 012979 204 CLQVLNLVGV 213 (452)
Q Consensus 204 ~Le~L~L~~~ 213 (452)
+|+.|+|.++
T Consensus 132 ~L~~L~Ls~N 141 (605)
T 1m9s_A 132 QLESLYLGNN 141 (605)
T ss_dssp TCSEEECCSS
T ss_pred ccCEEECCCC
Confidence 9999999765
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.73 E-value=5.7e-06 Score=84.63 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=62.7
Q ss_pred HHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccceec
Q 012979 74 LENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFIS 153 (452)
Q Consensus 74 v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~ 153 (452)
+..++...+.++.|++..+. +. +. ....+...+ ...+.|++|++++..- .+.....+.
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~------l~-------~~---~~~~l~~~l-~~~~~L~~L~Ls~n~l-----~~~~~~~l~ 77 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCG------LT-------EA---RCKDISSAL-RVNPALAELNLRSNEL-----GDVGVHCVL 77 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSC------CC-------HH---HHHHHHHHH-HTCTTCCEEECTTCCC-----HHHHHHHHH
T ss_pred HHHHHhhcCCccEEEccCCC------CC-------HH---HHHHHHHHH-HhCCCcCEEeCCCCcC-----ChHHHHHHH
Confidence 44456667889999998431 10 00 001111111 1246788888863211 011122222
Q ss_pred ccCC----CCcEEEeeceeec-------CCCCCCCCCCceeeeeeEeecchhHHHHhc----cCCcCCeEEEecc
Q 012979 154 SCCK----SLVELEVKNAWLS-------VDNLNQMPMLTKLTLEFIRLEDEDLDKVND----CFPCLQVLNLVGV 213 (452)
Q Consensus 154 ~~c~----~L~~L~L~~~~~d-------~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~----~cP~Le~L~L~~~ 213 (452)
..++ +|++|+|+++.+. +..+..+++|++|+|.+..+.+..+..+.. ..+.|++|+|.+|
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 2233 6888888765443 223567788888888777776655544332 3556888888655
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.70 E-value=0.00018 Score=74.83 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=31.6
Q ss_pred CcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCch
Q 012979 286 RNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAW 352 (452)
Q Consensus 286 ~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~ 352 (452)
.+|+.|+++...+..+..-+..+++++.|.+.-.. ...+ +...+..+|+|++|++.+..+
T Consensus 421 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~----l~~l---~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ----LKSV---PDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC----CCCC---CTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc----CCcc---CHHHhccCCcccEEECcCCCC
Confidence 46667777654444333323356777776653211 1111 112466777777777766533
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.70 E-value=1.5e-05 Score=77.65 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=30.8
Q ss_pred ccCCCCcEEEeeceeecC--C-----CCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 154 SCCKSLVELEVKNAWLSV--D-----NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~d~--~-----~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
..+++|++|+|.+..+.. + .+..+++|++|+|.+-.+....- ..++.+++|++|+|.++
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDN 179 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSC
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCC
Confidence 345667777776532211 1 12346677777776655532111 22345667777777554
No 82
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=0.00015 Score=81.11 Aligned_cols=128 Identities=17% Similarity=0.175 Sum_probs=78.4
Q ss_pred cCCceEEEeeeccccc-ccccc----------cccceecc--cCCCCcEEEeece-eec--CCCCCCCCCCceeeeeeEe
Q 012979 126 CEELKFLSISDCWFQS-CWRKS----------EVLAFISS--CCKSLVELEVKNA-WLS--VDNLNQMPMLTKLTLEFIR 189 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~-~~~~~----------~~L~~~~~--~c~~L~~L~L~~~-~~d--~~~l~~fp~Lr~L~L~~v~ 189 (452)
.+.|++|+|++..... ..+.. ..+|.... .+++|+.|+|.++ +.. +..+..+++|++|+|.+-.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4789999997432100 00000 01555544 7899999999974 232 3457899999999999876
Q ss_pred -ecc----hhHHHH---hccCCcCCeEEEecccccccCc---c-ccccccEEEeeec---CCcceEEecCCceeEEEeee
Q 012979 190 -LED----EDLDKV---NDCFPCLQVLNLVGVGGFRQPK---I-HLLHLKSCLWTVS---NAPLSLAIYAPNLVKLELRC 254 (452)
Q Consensus 190 -i~~----~~L~~l---l~~cP~Le~L~L~~~~g~~~~~---l-~~~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~ 254 (452)
+++ ..+..+ +..+|+|++|+|.++.-...|. + .+++|+.+.+.-. ..+ .+. ..++|+.|++..
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~-~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG-TNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC-TTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhc-CCCcceEEECcC
Confidence 554 444443 2567799999997764323332 2 3667888755322 112 222 567888888754
Q ss_pred e
Q 012979 255 V 255 (452)
Q Consensus 255 ~ 255 (452)
.
T Consensus 605 N 605 (876)
T 4ecn_A 605 N 605 (876)
T ss_dssp S
T ss_pred C
Confidence 3
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.70 E-value=3.2e-05 Score=75.02 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=87.1
Q ss_pred ccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEee
Q 012979 154 SCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWT 232 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~ 232 (452)
..+++|+.|+|.+..+ ..+....+++|++|+|.+-.+. .+...+..+|.|++|.|.++. ..
T Consensus 52 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~-l~--------------- 113 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNR-LT--------------- 113 (290)
T ss_dssp TTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSC-CC---------------
T ss_pred hcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCc-Cc---------------
Confidence 4567777777775322 2222356777777777766554 222334567777777775432 11
Q ss_pred ecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccccccc-cccccCCce
Q 012979 233 VSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLI-NTFPFGKTI 311 (452)
Q Consensus 233 ~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~l 311 (452)
.......-..++|++|.+...... ..+.-.+.++.+|+.|+++...+..+. .++..++++
T Consensus 114 --~l~~~~~~~l~~L~~L~L~~N~l~-----------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 114 --SLPLGALRGLGELQELYLKGNELK-----------------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp --CCCSSTTTTCTTCCEEECTTSCCC-----------------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred --ccCHHHHcCCCCCCEEECCCCCCC-----------------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 111011115678888887432211 111123456778888888765444332 234567888
Q ss_pred eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhh
Q 012979 312 KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSA 354 (452)
Q Consensus 312 kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~ 354 (452)
+.|.+.-.. ... ++.-+...++|+.|++.+..|.+
T Consensus 175 ~~L~L~~N~----l~~----ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 175 DTLLLQENS----LYT----IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CEEECCSSC----CCC----CCTTTTTTCCCSEEECCSCCBCC
T ss_pred CEEECCCCc----CCc----cChhhcccccCCeEEeCCCCccC
Confidence 988763221 111 23333456799999998886654
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.69 E-value=0.00011 Score=81.62 Aligned_cols=121 Identities=12% Similarity=0.086 Sum_probs=68.3
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
...+++|++++... ....+.....+++|+.|+|.+..+ .+..+..+++|++|+|.+-.+..-. ...+..+
T Consensus 265 ~~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l 337 (844)
T 3j0a_A 265 RSSVRHLDLSHGFV------FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGL 337 (844)
T ss_dssp TSCCCEEECTTCCC------CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSC
T ss_pred cCCccEEECCCCcc------cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCC
Confidence 36789998864311 111233344678888888886432 2345678888888888876664321 1224568
Q ss_pred CcCCeEEEecccccccC--cc-ccccccEEEeeecCCcceEEecCCceeEEEeeee
Q 012979 203 PCLQVLNLVGVGGFRQP--KI-HLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCV 255 (452)
Q Consensus 203 P~Le~L~L~~~~g~~~~--~l-~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~ 255 (452)
|+|++|+|.++.-...+ .+ .+++|+.+.+.-... ..+. ..|+|+.|.+...
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~-~~~~L~~L~l~~N 391 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-TTIH-FIPSIPDIFLSGN 391 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS-CCCS-SCCSCSEEEEESC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC-Cccc-CCCCcchhccCCC
Confidence 88888888654211111 12 256777774432111 1122 3677777777543
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.69 E-value=5.1e-05 Score=72.44 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=37.5
Q ss_pred cCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 155 CCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
.+++|+.|+|.+..+ +.+++..+++|++|+|.+-.+.+-. . ++.+|.|++|+|.++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSS
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCC
Confidence 466788888876433 3456677788888888776665422 1 567888888888654
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.69 E-value=0.00025 Score=66.01 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=33.7
Q ss_pred cccccCccc-EEEEeecccccccc-ccccCCceeEEEEEeccCCCCccccccChhHHhhcC-CCccEEEEccC
Q 012979 281 RFQEFRNLM-NLQLESSSLSSLIN-TFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVF-PNLSSLTLGPR 350 (452)
Q Consensus 281 ~l~~~~~L~-~L~l~~~~~~~~~~-l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~-PnL~~L~I~~~ 350 (452)
.+.++.+|+ +|+++...+..+.. .+.. +++++|.+.-.. ....+ ++..+..+ |+|++|++...
T Consensus 150 ~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~---~l~~i---~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNK---YLTVI---DKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCT---TCCEE---CTTTTTTCSBCCSEEECTTC
T ss_pred cccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCC---CcccC---CHHHhhccccCCcEEECCCC
Confidence 355677888 88887544433222 2223 677777652110 01111 12445566 88888888653
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.68 E-value=2.5e-06 Score=87.28 Aligned_cols=277 Identities=14% Similarity=0.087 Sum_probs=149.2
Q ss_pred hhcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeecC---CCC-CCCC----CCceeeeeeEeecch--
Q 012979 124 WVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSV---DNL-NQMP----MLTKLTLEFIRLEDE-- 193 (452)
Q Consensus 124 ~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~---~~l-~~fp----~Lr~L~L~~v~i~~~-- 193 (452)
...+.+++|++++..-.. .....++.....+++|++|+|++..+.. ..+ ..++ +|++|+|.+..+.+.
T Consensus 25 ~~~~~L~~L~L~~~~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTE--ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHTTCSEEEEESSCCCH--HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred hhcCCccEEEccCCCCCH--HHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 356889999998543210 0011344445578999999999854421 112 2344 799999999888864
Q ss_pred -hHHHHhccCCcCCeEEEecccccccCc---c------ccccccEEEeeecCCcc-------eEEecCCceeEEEeeeec
Q 012979 194 -DLDKVNDCFPCLQVLNLVGVGGFRQPK---I------HLLHLKSCLWTVSNAPL-------SLAIYAPNLVKLELRCVK 256 (452)
Q Consensus 194 -~L~~ll~~cP~Le~L~L~~~~g~~~~~---l------~~~sLr~l~l~~s~~~~-------~l~~~aP~Le~L~l~~~~ 256 (452)
.+...+..+|.|++|+|.++. ..... + ..++|+++.+....... ......|+|+.|++....
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 566778899999999997653 21110 1 12468888554221110 011145899999986432
Q ss_pred CCcee---e------eCCccceEEEeeccccc-------ccccccCcccEEEEeecccccc------ccccccCCceeEE
Q 012979 257 PKSLV---L------QTPLLHDFCLSLEVANE-------IRFQEFRNLMNLQLESSSLSSL------INTFPFGKTIKKL 314 (452)
Q Consensus 257 ~~~l~---i------~~p~L~~~~l~i~~~~~-------~~l~~~~~L~~L~l~~~~~~~~------~~l~~~~p~lkkL 314 (452)
..... + ..+.|+.+.+.-..... -.+.++++|++|+++...+... ..+...++++++|
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 11000 0 12355655442111111 0233568899999986443221 1122347889988
Q ss_pred EEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhhh-hhccccCccccccccccceeEEEEEeecCCcchhHHHH
Q 012979 315 KVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAV-QSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIF 393 (452)
Q Consensus 315 ~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~~-~~~~~~~~~~~~~~~~~lk~lv~~~~~~~~~~~~~fl~ 393 (452)
.+.-. ...+... ..++..+..+|+|++|++........ ...+... + ...-+.++++.+..-.- .......+.
T Consensus 262 ~L~~n-~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-l--~~~~~~L~~L~L~~n~l-~~~~~~~l~ 334 (461)
T 1z7x_W 262 WIWEC-GITAKGC--GDLCRVLRAKESLKELSLAGNELGDEGARLLCET-L--LEPGCQLESLWVKSCSF-TAACCSHFS 334 (461)
T ss_dssp ECTTS-CCCHHHH--HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH-H--TSTTCCCCEEECTTSCC-BGGGHHHHH
T ss_pred ECcCC-CCCHHHH--HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH-h--ccCCccceeeEcCCCCC-chHHHHHHH
Confidence 76322 1111110 11356778899999999976533210 0011100 0 00014677665542111 122334455
Q ss_pred HHHhcccccccEEEEec
Q 012979 394 AIMNICSNLSDMALLIH 410 (452)
Q Consensus 394 ~ll~~a~~L~~m~i~~~ 410 (452)
..+.+.+.|+.+.+.-.
T Consensus 335 ~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHCSSCCEEECCSS
T ss_pred HHHhhCCCccEEEccCC
Confidence 56677899998887543
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.67 E-value=0.00015 Score=67.64 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=96.3
Q ss_pred cCCceEEEeeecccccccccccccce-ecccCCCCcEEEeecee-e---cCCCCCCCCCCceeeeee-EeecchhHHHHh
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNAW-L---SVDNLNQMPMLTKLTLEF-IRLEDEDLDKVN 199 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~~-~---d~~~l~~fp~Lr~L~L~~-v~i~~~~L~~ll 199 (452)
...+++|++.+..- ..++. ....+++|+.|+|.+.. + ....+..+++|++|+|.+ -.+..-. ...+
T Consensus 30 ~~~l~~L~l~~n~l-------~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f 101 (239)
T 2xwt_C 30 PPSTQTLKLIETHL-------RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDAL 101 (239)
T ss_dssp CTTCCEEEEESCCC-------SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSE
T ss_pred CCcccEEEEeCCcc-------eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHh
Confidence 34788888874321 11222 23467889999998642 3 233567889999999986 4444211 1123
Q ss_pred ccCCcCCeEEEecccccccCc-ccccccc---EEEeeecCCcceEE----ecCCcee-EEEeeeecCCceeeeCCccceE
Q 012979 200 DCFPCLQVLNLVGVGGFRQPK-IHLLHLK---SCLWTVSNAPLSLA----IYAPNLV-KLELRCVKPKSLVLQTPLLHDF 270 (452)
Q Consensus 200 ~~cP~Le~L~L~~~~g~~~~~-l~~~sLr---~l~l~~s~~~~~l~----~~aP~Le-~L~l~~~~~~~l~i~~p~L~~~ 270 (452)
..+|+|++|.|.++.-...+. -.+++|+ .+.+.-...-..+. -..++|+ .|++....
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-------------- 167 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-------------- 167 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC--------------
T ss_pred CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC--------------
Confidence 568999999997653111121 1123333 43221110000010 1234455 54442111
Q ss_pred EEeecccccccccccCcccEEEEeec-ccccc-ccccccC-CceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEE
Q 012979 271 CLSLEVANEIRFQEFRNLMNLQLESS-SLSSL-INTFPFG-KTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL 347 (452)
Q Consensus 271 ~l~i~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~l~~~~-p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I 347 (452)
+...+...+.+ .+|++|+++.. .+..+ ...+..+ ++++.|.+.-. ....+ +. ..|++|+.|++
T Consensus 168 ---l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N----~l~~l----~~--~~~~~L~~L~l 233 (239)
T 2xwt_C 168 ---FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT----SVTAL----PS--KGLEHLKELIA 233 (239)
T ss_dssp ---CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC----CCCCC----CC--TTCTTCSEEEC
T ss_pred ---CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC----ccccC----Ch--hHhccCceeec
Confidence 11112122233 68889998755 24433 2345567 89999876321 11111 11 17899999998
Q ss_pred cc
Q 012979 348 GP 349 (452)
Q Consensus 348 ~~ 349 (452)
..
T Consensus 234 ~~ 235 (239)
T 2xwt_C 234 RN 235 (239)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.67 E-value=0.0001 Score=71.43 Aligned_cols=148 Identities=21% Similarity=0.229 Sum_probs=90.5
Q ss_pred CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeee
Q 012979 157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTV 233 (452)
Q Consensus 157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~ 233 (452)
++|++|+|.+..+ .+..+..+++|++|+|.+-.++.-.. .+.+|+|++|+|.++. ..
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~-l~---------------- 90 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ-LQ---------------- 90 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSC-CS----------------
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCc-CC----------------
Confidence 5788888886322 23456788888888887766653211 1568888888886532 11
Q ss_pred cCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccc-ccccccCCcee
Q 012979 234 SNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIK 312 (452)
Q Consensus 234 s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lk 312 (452)
..+..+ ...|+|++|++..... ...+.-.+.++.+|++|+++...+..+ ..++...++++
T Consensus 91 -~l~~~~-~~l~~L~~L~l~~N~l-----------------~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 91 -SLPLLG-QTLPALTVLDVSFNRL-----------------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp -SCCCCT-TTCTTCCEEECCSSCC-----------------CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred -cCchhh-ccCCCCCEEECCCCcC-----------------cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 111111 2567888888753321 111222466788999999986554432 22345688999
Q ss_pred EEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 313 KLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 313 kL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
.|.+.-. ....+ ++.++..+++|+.|++...
T Consensus 152 ~L~L~~N----~l~~l---~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 152 KLSLANN----NLTEL---PAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp EEECTTS----CCSCC---CTTTTTTCTTCCEEECCSS
T ss_pred EEECCCC----cCCcc---CHHHhcCcCCCCEEECCCC
Confidence 9886322 11111 2356788999999999765
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.61 E-value=5.5e-05 Score=71.33 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=90.9
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
..++.|+|.+..- ....+.....+++|++|+|.+..+ + +..+..+++|++|+|.+-.+..-.- ..+..++
T Consensus 35 ~~l~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGL------ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-GVFDHLT 107 (251)
T ss_dssp TTCCEEECTTSCC------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCT
T ss_pred CCCCEEEccCCCc------CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh-hHhcccC
Confidence 5788999974321 111222234688999999997433 2 2347889999999998877763221 3346799
Q ss_pred cCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccccc
Q 012979 204 CLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQ 283 (452)
Q Consensus 204 ~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~ 283 (452)
+|++|+|.++. .... ....--..++|+.|++..... ...+.-.+.
T Consensus 108 ~L~~L~L~~N~-l~~~-----------------~~~~~~~l~~L~~L~Ls~N~l-----------------~~~~~~~~~ 152 (251)
T 3m19_A 108 QLDKLYLGGNQ-LKSL-----------------PSGVFDRLTKLKELRLNTNQL-----------------QSIPAGAFD 152 (251)
T ss_dssp TCCEEECCSSC-CCCC-----------------CTTTTTTCTTCCEEECCSSCC-----------------CCCCTTTTT
T ss_pred CCCEEEcCCCc-CCCc-----------------ChhHhccCCcccEEECcCCcC-----------------CccCHHHcC
Confidence 99999997642 1110 001111567888888743221 111112455
Q ss_pred ccCcccEEEEeeccccccc-cccccCCceeEEEEE
Q 012979 284 EFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVE 317 (452)
Q Consensus 284 ~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~ 317 (452)
++++|+.|+++...+..+. ..+..+++++.|.+.
T Consensus 153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 6778888888765544332 245567888887764
No 91
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.60 E-value=0.00013 Score=71.32 Aligned_cols=208 Identities=15% Similarity=0.083 Sum_probs=112.3
Q ss_pred cCCceEEEeee-cccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhcc
Q 012979 126 CEELKFLSISD-CWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDC 201 (452)
Q Consensus 126 ~~~L~eL~l~~-~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~ 201 (452)
.+.|++|++++ ... ...+|.....+++|++|+|.+..+ .+..+..+++|++|+|.+-.+.+.. ...+..
T Consensus 75 l~~L~~L~L~~~n~l------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~ 147 (313)
T 1ogq_A 75 LPYLNFLYIGGINNL------VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISS 147 (313)
T ss_dssp CTTCSEEEEEEETTE------ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-CGGGGG
T ss_pred CCCCCeeeCCCCCcc------cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-ChHHhc
Confidence 46788888862 211 112344445678888888886432 2334778888888888776665321 122355
Q ss_pred CCcCCeEEEeccccc-ccCc-c-ccc-cccEEEeeecC----CcceEEecCCceeEEEeeeecCC----ceeeeCCccce
Q 012979 202 FPCLQVLNLVGVGGF-RQPK-I-HLL-HLKSCLWTVSN----APLSLAIYAPNLVKLELRCVKPK----SLVLQTPLLHD 269 (452)
Q Consensus 202 cP~Le~L~L~~~~g~-~~~~-l-~~~-sLr~l~l~~s~----~~~~l~~~aP~Le~L~l~~~~~~----~l~i~~p~L~~ 269 (452)
+|+|++|+|.++.-. ..+. + .++ +|+.+.+.-.. .+..+. .. +|+.|++...... ...-..+.|+.
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NL-NLAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GC-CCSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CC-cccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 888888888665311 1221 2 233 67777443111 111111 22 3888887532211 01112345555
Q ss_pred EEEeeccc--ccccccccCcccEEEEeecccc-ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEE
Q 012979 270 FCLSLEVA--NEIRFQEFRNLMNLQLESSSLS-SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLT 346 (452)
Q Consensus 270 ~~l~i~~~--~~~~l~~~~~L~~L~l~~~~~~-~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~ 346 (452)
+.+.-... ....+..+++|++|+++...+. .+...+..+++++.|.+.-...... ++.. ..+|+|+.|+
T Consensus 226 L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-------ip~~-~~l~~L~~l~ 297 (313)
T 1ogq_A 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-------IPQG-GNLQRFDVSA 297 (313)
T ss_dssp EECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE-------CCCS-TTGGGSCGGG
T ss_pred EECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc-------CCCC-ccccccChHH
Confidence 44321111 0112556789999999865554 3344566789999988642211001 1222 6778888888
Q ss_pred EccC
Q 012979 347 LGPR 350 (452)
Q Consensus 347 I~~~ 350 (452)
+.+.
T Consensus 298 l~~N 301 (313)
T 1ogq_A 298 YANN 301 (313)
T ss_dssp TCSS
T ss_pred hcCC
Confidence 7655
No 92
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.59 E-value=0.0003 Score=75.80 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=8.6
Q ss_pred hcCCCccEEEEccC
Q 012979 337 DVFPNLSSLTLGPR 350 (452)
Q Consensus 337 ~~~PnL~~L~I~~~ 350 (452)
..+++|++|++...
T Consensus 238 ~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 238 VLPSELKELMVSGN 251 (622)
T ss_dssp CCCTTCCEEECCSS
T ss_pred CCCCcCcEEECCCC
Confidence 34567777777543
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.58 E-value=6.6e-05 Score=66.04 Aligned_cols=83 Identities=29% Similarity=0.331 Sum_probs=60.9
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
.+.+++|++.+.... +..+|.....+++|++|+|.+..+ +...+..+++|++|+|.+-.+.+. +..+...+|+
T Consensus 23 ~~~L~~L~l~~n~l~-----~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSN-----DGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCB-----TTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTT
T ss_pred cccCCEEECCCCCCC-----hhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCC
Confidence 378999999754221 123454555789999999997544 345678899999999999888653 4555667999
Q ss_pred CCeEEEeccc
Q 012979 205 LQVLNLVGVG 214 (452)
Q Consensus 205 Le~L~L~~~~ 214 (452)
|++|+|.++.
T Consensus 97 L~~L~Ls~N~ 106 (168)
T 2ell_A 97 LTHLNLSGNK 106 (168)
T ss_dssp CCEEECBSSS
T ss_pred CCEEeccCCc
Confidence 9999997763
No 94
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.56 E-value=0.00054 Score=73.76 Aligned_cols=19 Identities=5% Similarity=-0.006 Sum_probs=11.1
Q ss_pred HHhhcCCCccEEEEccCch
Q 012979 334 VLFDVFPNLSSLTLGPRAW 352 (452)
Q Consensus 334 ~lL~~~PnL~~L~I~~~~~ 352 (452)
.-+..+|+|+.|++.++.+
T Consensus 278 ~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp GGGGGSCTTCEEECCSCCC
T ss_pred HHHhhccccCEEEecCCCC
Confidence 3455666666666655433
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.55 E-value=0.00029 Score=74.29 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=33.1
Q ss_pred CcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979 286 RNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS 353 (452)
Q Consensus 286 ~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~ 353 (452)
.+|++|+++...+..+..-+..+++++.|.+.-.. ...+ ++..+..+|+|+.|++.+..|.
T Consensus 450 ~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~----l~~l---~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ----LKSV---PDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC----CCCC---CTTSTTTCTTCCCEECCSCCBC
T ss_pred CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC----CCCC---CHHHHhcCCCCCEEEecCCCcC
Confidence 46777777754444332323356777777653211 1111 1124667788888888766443
No 96
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.51 E-value=3.3e-05 Score=75.42 Aligned_cols=36 Identities=33% Similarity=0.688 Sum_probs=33.3
Q ss_pred CCCCcHHHHHHHHhcCCChhHHH-HHHHHhHHHHHhhc
Q 012979 2 EEHLPQPLILEILSRLTDSADLA-RCRVVSKTLNSLCK 38 (452)
Q Consensus 2 ~s~LPd~lL~~ILS~L~~~kD~a-rts~lSkrWr~l~~ 38 (452)
.+.||||||.+||++|| ++|++ +|++|||+||.+..
T Consensus 51 ~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 51 LAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp TTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHT
T ss_pred hhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhc
Confidence 46899999999999996 99999 99999999999853
No 97
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.43 E-value=9.8e-05 Score=66.71 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=63.0
Q ss_pred cccceecccCCCCcEEEeeceeecCC---CCCCCCCCceeeeeeE-eecchhHHHHhc---cCCcCCeEEEecccccccC
Q 012979 147 EVLAFISSCCKSLVELEVKNAWLSVD---NLNQMPMLTKLTLEFI-RLEDEDLDKVND---CFPCLQVLNLVGVGGFRQP 219 (452)
Q Consensus 147 ~~L~~~~~~c~~L~~L~L~~~~~d~~---~l~~fp~Lr~L~L~~v-~i~~~~L~~ll~---~cP~Le~L~L~~~~g~~~~ 219 (452)
..||........|+.|+|+++.+... .+..+++|++|+|.+. .|+|..+..+-. .||.||+|+|.+|..+.+.
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 34555433345799999998655322 3568899999999876 489999988755 2688999999887544332
Q ss_pred ccccccccEEEeeecCCcceEEecCCceeEEEeeee
Q 012979 220 KIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCV 255 (452)
Q Consensus 220 ~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~ 255 (452)
.+ ..+. ..|+|++|++..+
T Consensus 131 Gl----------------~~L~-~~~~L~~L~L~~c 149 (176)
T 3e4g_A 131 GI----------------IALH-HFRNLKYLFLSDL 149 (176)
T ss_dssp HH----------------HHGG-GCTTCCEEEEESC
T ss_pred HH----------------HHHh-cCCCCCEEECCCC
Confidence 11 1133 5788999988643
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.41 E-value=7.7e-05 Score=64.24 Aligned_cols=82 Identities=27% Similarity=0.266 Sum_probs=59.0
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
.+.+++|.+.+..- . ...+|.....+++|+.|+|.+..+ +.+.+..+++|++|+|.+-.+.+. +......+|+
T Consensus 16 ~~~l~~L~l~~n~l----~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRS----N-EGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBC----B-TTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTT
T ss_pred CccCeEEEccCCcC----C-hhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCC
Confidence 36788998864321 1 123444455789999999997543 345678899999999998877653 5566677999
Q ss_pred CCeEEEecc
Q 012979 205 LQVLNLVGV 213 (452)
Q Consensus 205 Le~L~L~~~ 213 (452)
|++|+|.++
T Consensus 90 L~~L~ls~N 98 (149)
T 2je0_A 90 LTHLNLSGN 98 (149)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 999999765
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.39 E-value=0.0001 Score=64.75 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=33.4
Q ss_pred CCCcEEEeeceeec---CCC-CCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 157 KSLVELEVKNAWLS---VDN-LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 157 ~~L~~L~L~~~~~d---~~~-l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
++|++|+|.++.+. .+. +..+++|++|+|.+..+.+- ..+..+|+|++|+|.++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSEN 81 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCC
Confidence 56777887764332 232 35677777777776665543 33566777777777554
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.38 E-value=9.3e-05 Score=72.15 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=39.4
Q ss_pred cCCceEEEeeecccccccccccccceec--ccCCCCcEEEeeceee-cCC-CCCCC-----CCCceeeeeeEeecchhHH
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFIS--SCCKSLVELEVKNAWL-SVD-NLNQM-----PMLTKLTLEFIRLEDEDLD 196 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~--~~c~~L~~L~L~~~~~-d~~-~l~~f-----p~Lr~L~L~~v~i~~~~L~ 196 (452)
...|++|++++..- ...+|... ..+++|++|+|.+..+ +.+ .+..+ ++|++|+|.+-.+..-.-.
T Consensus 94 l~~L~~L~L~~n~l------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 94 ISGLQELTLENLEV------TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TSCCCEEEEEEEBC------BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred cCCccEEEccCCcc------cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 45677777763211 11122211 3456677777765322 211 12222 6667776666555432211
Q ss_pred HHhccCCcCCeEEEecc
Q 012979 197 KVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 197 ~ll~~cP~Le~L~L~~~ 213 (452)
.+..+++|++|+|.++
T Consensus 168 -~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 168 -QVRVFPALSTLDLSDN 183 (312)
T ss_dssp -TCCCCSSCCEEECCSC
T ss_pred -HhccCCCCCEEECCCC
Confidence 1345666777766544
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.33 E-value=0.0001 Score=73.41 Aligned_cols=206 Identities=15% Similarity=0.094 Sum_probs=100.6
Q ss_pred CceEEEeeecccccccccccccceeccc-CCCCcEEEeeceeecCCC-------CCCC-CCCceeeeeeEeecchhH---
Q 012979 128 ELKFLSISDCWFQSCWRKSEVLAFISSC-CKSLVELEVKNAWLSVDN-------LNQM-PMLTKLTLEFIRLEDEDL--- 195 (452)
Q Consensus 128 ~L~eL~l~~~~~~~~~~~~~~L~~~~~~-c~~L~~L~L~~~~~d~~~-------l~~f-p~Lr~L~L~~v~i~~~~L--- 195 (452)
.|++|+|++..-... ....+...... +++|++|+|++..+...+ +..+ ++|++|+|.+-.+.+...
T Consensus 52 ~L~~L~Ls~N~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 52 SVTSLNLSGNSLGFK--NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp TCCEEECCSSCGGGS--CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceeEEECcCCCCCHH--HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence 799999974321100 01111111122 378999999875443211 3345 789999998888875444
Q ss_pred HHHhcc-CCcCCeEEEecccccccCc---c-----cc-ccccEEEeeecC---Cc-ceE---EecC-CceeEEEeeeecC
Q 012979 196 DKVNDC-FPCLQVLNLVGVGGFRQPK---I-----HL-LHLKSCLWTVSN---AP-LSL---AIYA-PNLVKLELRCVKP 257 (452)
Q Consensus 196 ~~ll~~-cP~Le~L~L~~~~g~~~~~---l-----~~-~sLr~l~l~~s~---~~-~~l---~~~a-P~Le~L~l~~~~~ 257 (452)
...+.. ++.|++|+|.++. ..... + .. ++|+.+.+.-.. .. ..+ .... ++|+.|++.....
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 344555 4699999997653 21111 1 12 256666433211 00 000 0122 3677777643211
Q ss_pred CceeeeCCccceEEEeecccccccccc-cCcccEEEEeecccc-----ccccccccCCceeEEEEEeccCC-CCcccccc
Q 012979 258 KSLVLQTPLLHDFCLSLEVANEIRFQE-FRNLMNLQLESSSLS-----SLINTFPFGKTIKKLKVELLKPG-EPIGMKNL 330 (452)
Q Consensus 258 ~~l~i~~p~L~~~~l~i~~~~~~~l~~-~~~L~~L~l~~~~~~-----~~~~l~~~~p~lkkL~L~~~~~~-~~~~~l~~ 330 (452)
. ..... ..+. .+.. ..+|++|+++...+. .+..++..+++++.|.+.-.... .....+ .
T Consensus 209 ~-----~~~~~-------~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-~ 274 (362)
T 3goz_A 209 G-----LKSYA-------ELAY-IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-K 274 (362)
T ss_dssp G-----GSCHH-------HHHH-HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-H
T ss_pred C-----hhHHH-------HHHH-HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH-H
Confidence 0 00000 0011 1222 358899999864432 22344567889999987543211 000000 0
Q ss_pred ChhHHhhcCCCccEEEEccC
Q 012979 331 NLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 331 dl~~lL~~~PnL~~L~I~~~ 350 (452)
.+...+..+++|+.|++.+.
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHhccCCceEEEecCCC
Confidence 11233445556667777554
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.29 E-value=0.00037 Score=64.88 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979 157 KSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 157 ~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
++|++|+|.+..+ . +..+..+++|++|+|.+-.+..-. ...+..+|+|++|+|.+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCC
Confidence 5677777775322 1 233566677777777665543211 12234466666666644
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.28 E-value=4.9e-05 Score=72.57 Aligned_cols=160 Identities=11% Similarity=0.074 Sum_probs=88.8
Q ss_pred CCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCcc-ccccccEEEeeec
Q 012979 157 KSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKI-HLLHLKSCLWTVS 234 (452)
Q Consensus 157 ~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l-~~~sLr~l~l~~s 234 (452)
+.++.|+|++..+ +.+.+..+++|++|+|.+..+..- .. ++.+++|++|+|.++.-...+.+ .+++|+.+.+.-.
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~~-l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--AG-MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--TT-GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--hH-HhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 3455566664222 333566889999999988777642 22 56799999999976531111112 2456666644322
Q ss_pred CCcc--eEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccccccccccccCCcee
Q 012979 235 NAPL--SLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIK 312 (452)
Q Consensus 235 ~~~~--~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lk 312 (452)
.... .+. . ++|+.|++...... ..+ .+.++++|++|+++...+..+ ..+..+++++
T Consensus 96 ~l~~l~~~~-~-~~L~~L~L~~N~l~-----------------~~~--~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~ 153 (263)
T 1xeu_A 96 RLKNLNGIP-S-ACLSRLFLDNNELR-----------------DTD--SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLE 153 (263)
T ss_dssp CCSCCTTCC-C-SSCCEEECCSSCCS-----------------BSG--GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCC
T ss_pred ccCCcCccc-c-CcccEEEccCCccC-----------------CCh--hhcCcccccEEECCCCcCCCC-hHHccCCCCC
Confidence 1100 111 1 56666665432111 111 355677888888876554432 3455677888
Q ss_pred EEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 313 KLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 313 kL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
.|.+.-.. ..+ + ..+..+|+|+.|++.+.
T Consensus 154 ~L~L~~N~-i~~-------~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 154 VLDLHGNE-ITN-------T-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp EEECTTSC-CCB-------C-TTSTTCCCCCEEEEEEE
T ss_pred EEECCCCc-Ccc-------h-HHhccCCCCCEEeCCCC
Confidence 87752211 111 1 34567788888888654
No 104
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.27 E-value=6.5e-05 Score=72.97 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=33.8
Q ss_pred CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc
Q 012979 2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE 39 (452)
Q Consensus 2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~ 39 (452)
++.||+||+.+|+|+|+ ++|+++++.|||+||.+..+
T Consensus 5 l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTC
T ss_pred hHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcc
Confidence 46899999999999995 99999999999999998654
No 105
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.26 E-value=0.00026 Score=67.31 Aligned_cols=97 Identities=15% Similarity=0.022 Sum_probs=58.7
Q ss_pred CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccC--c-cccccccEEE
Q 012979 157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQP--K-IHLLHLKSCL 230 (452)
Q Consensus 157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~--~-l~~~sLr~l~ 230 (452)
++|++|+|.+..+ .+..+..+++|++|+|.+-.+..-.- ..++.++.|++|+|.++.-...+ . -.+++|+.+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 4799999997433 23367899999999998876653221 22466999999999765311111 1 2356777764
Q ss_pred eeec---CCcceEEecCCceeEEEeee
Q 012979 231 WTVS---NAPLSLAIYAPNLVKLELRC 254 (452)
Q Consensus 231 l~~s---~~~~~l~~~aP~Le~L~l~~ 254 (452)
+.-. .......-..++|+.|++..
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAH 133 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcC
Confidence 4321 11111122567777777743
No 106
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.24 E-value=7.4e-05 Score=67.52 Aligned_cols=85 Identities=12% Similarity=0.210 Sum_probs=63.6
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeece-eecCCC---CCCC----CCCceeeeeeE-eecchhHHH
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNA-WLSVDN---LNQM----PMLTKLTLEFI-RLEDEDLDK 197 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~-~~d~~~---l~~f----p~Lr~L~L~~v-~i~~~~L~~ 197 (452)
-.|++|+++++.- .+..+..+. +|++|++|+|++| .+...+ +..+ ++|++|+|++. .|+|..+..
T Consensus 61 ~~L~~LDLs~~~I-----td~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCI-----MSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCC-----CGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCc-----cHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 4689999986531 234555554 7999999999996 353233 3343 58999999874 699999988
Q ss_pred HhccCCcCCeEEEeccccccc
Q 012979 198 VNDCFPCLQVLNLVGVGGFRQ 218 (452)
Q Consensus 198 ll~~cP~Le~L~L~~~~g~~~ 218 (452)
+ +.||+|++|+|.+|.++.+
T Consensus 135 L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 L-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp G-GGCTTCCEEEEESCTTCCC
T ss_pred H-hcCCCCCEEECCCCCCCCc
Confidence 5 7899999999998866544
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.18 E-value=6.6e-05 Score=64.67 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=32.7
Q ss_pred CCCcEEEeeceeec---CC-CCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 157 KSLVELEVKNAWLS---VD-NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 157 ~~L~~L~L~~~~~d---~~-~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
++|++|+|.++.+. .+ .+..+++|++|+|.+-.+.+- ..+..+|.|++|+|.++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC
Confidence 56777887764332 22 246677777777766555543 33456677777777543
No 108
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.15 E-value=0.00044 Score=69.52 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=58.3
Q ss_pred cCCceEEEeeecccc--c-ccccccccceecccCCCCcEEEeecee-ecCCCCCCCCCCceeeeeeEeecchhHHHHh-c
Q 012979 126 CEELKFLSISDCWFQ--S-CWRKSEVLAFISSCCKSLVELEVKNAW-LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVN-D 200 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~--~-~~~~~~~L~~~~~~c~~L~~L~L~~~~-~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll-~ 200 (452)
.+.|++|.|.+.... . .|-....+......++.|++|+|++.. +..+.+ ..++|++|+|....+.++.+..+. +
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence 479999998643110 0 011112344555678999999998742 333333 489999999998888888887764 3
Q ss_pred cCCcCCeEEEe
Q 012979 201 CFPCLQVLNLV 211 (452)
Q Consensus 201 ~cP~Le~L~L~ 211 (452)
.+|+|++|.|.
T Consensus 217 ~lp~L~~L~L~ 227 (362)
T 2ra8_A 217 DLPNLEKLVLY 227 (362)
T ss_dssp BCTTCCEEEEE
T ss_pred cCCCCcEEEEe
Confidence 79999999995
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.15 E-value=0.00048 Score=63.73 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=25.3
Q ss_pred CCcEEEeeceee-c--C-CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979 158 SLVELEVKNAWL-S--V-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 158 ~L~~L~L~~~~~-d--~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
.+++|+|.+..+ . + ..+..+++|++|+|.+-.++.-.- ..+..++.|++|+|.+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTS 90 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCC
Confidence 456666665221 1 1 124556666666665544432110 1123356666666643
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.14 E-value=0.0016 Score=69.48 Aligned_cols=177 Identities=15% Similarity=0.036 Sum_probs=91.4
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
...++.|++++..-. .+|... +++|+.|+|.+..+ ..+ ..+++|++|+|.+-.++. +.. + ..+
T Consensus 58 ~~~L~~L~Ls~n~L~-------~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l--~~~ 121 (571)
T 3cvr_A 58 INQFSELQLNRLNLS-------SLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-L--PAS 121 (571)
T ss_dssp HTTCSEEECCSSCCS-------CCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-C--CTT
T ss_pred cCCccEEEeCCCCCC-------ccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-h--hcC
Confidence 357889988743211 133322 36799999987433 334 567899999998776654 222 2 228
Q ss_pred CCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccc
Q 012979 205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQE 284 (452)
Q Consensus 205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~ 284 (452)
|++|+|.++.-...+. .+++|+.+.+.-.... .+....++|+.|++..... ...|. +.
T Consensus 122 L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~L-----------------~~lp~--l~- 179 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPE-LPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQL-----------------TFLPE--LP- 179 (571)
T ss_dssp CCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCC-----------------SCCCC--CC-
T ss_pred CCEEECCCCcCCCCCC-cCccccEEeCCCCccC-cCCCcCCCcCEEECCCCCC-----------------CCcch--hh-
Confidence 9999997653222222 4556666644321110 0111345666666643211 11122 11
Q ss_pred cCcccEEEEeeccccccccccccCCce-------eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCch
Q 012979 285 FRNLMNLQLESSSLSSLINTFPFGKTI-------KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAW 352 (452)
Q Consensus 285 ~~~L~~L~l~~~~~~~~~~l~~~~p~l-------kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~ 352 (452)
.+|+.|+++...+..+.. + .+++ +.|.+.- +.... ++.-+..+|+|+.|++..+..
T Consensus 180 -~~L~~L~Ls~N~L~~lp~-~--~~~L~~~~~~L~~L~Ls~----N~l~~----lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 180 -ESLEALDVSTNLLESLPA-V--PVRNHHSEETEIFFRCRE----NRITH----IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -TTCCEEECCSSCCSSCCC-C--C--------CCEEEECCS----SCCCC----CCGGGGGSCTTEEEECCSSSC
T ss_pred -CCCCEEECcCCCCCchhh-H--HHhhhcccccceEEecCC----Cccee----cCHHHhcCCCCCEEEeeCCcC
Confidence 677777777544433222 1 1144 6666421 11111 233333488888888876544
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.13 E-value=0.00014 Score=72.47 Aligned_cols=207 Identities=18% Similarity=0.088 Sum_probs=108.0
Q ss_pred cCCceEEEeeecccccccccccccceecccCC-CCcEEEeeceeecCC---CCCC-----CCCCceeeeeeEeecc---h
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCK-SLVELEVKNAWLSVD---NLNQ-----MPMLTKLTLEFIRLED---E 193 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~-~L~~L~L~~~~~d~~---~l~~-----fp~Lr~L~L~~v~i~~---~ 193 (452)
.++|++|+|++..-... ....+......++ +|++|+|.+..+... .+.. +++|++|+|.+..+++ .
T Consensus 21 ~~~L~~L~Ls~n~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSI--STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGS--CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEccCCCCChH--HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 45699999974321100 0001112223566 899999997544322 2222 3999999999888864 4
Q ss_pred hHHHHhccC-CcCCeEEEecccccccCc------cc--cccccEEEeeecCCc----ceE---EecCC-ceeEEEeeeec
Q 012979 194 DLDKVNDCF-PCLQVLNLVGVGGFRQPK------IH--LLHLKSCLWTVSNAP----LSL---AIYAP-NLVKLELRCVK 256 (452)
Q Consensus 194 ~L~~ll~~c-P~Le~L~L~~~~g~~~~~------l~--~~sLr~l~l~~s~~~----~~l---~~~aP-~Le~L~l~~~~ 256 (452)
.+...+..+ +.|++|+|.++.-...+. +. .++|+.+.+.-.... ..+ ....| +|++|++....
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 455556666 899999997653111111 11 136666644321100 000 01223 67777664321
Q ss_pred CCceeeeCCccceEEEeeccccccccccc-CcccEEEEeeccccc-----ccccccc-CCceeEEEEEeccCCCCccccc
Q 012979 257 PKSLVLQTPLLHDFCLSLEVANEIRFQEF-RNLMNLQLESSSLSS-----LINTFPF-GKTIKKLKVELLKPGEPIGMKN 329 (452)
Q Consensus 257 ~~~l~i~~p~L~~~~l~i~~~~~~~l~~~-~~L~~L~l~~~~~~~-----~~~l~~~-~p~lkkL~L~~~~~~~~~~~l~ 329 (452)
.. ......+. -.+..+ .+|++|+++...+.. +...+.. .++++.|.+.-.. ..+...
T Consensus 179 l~-----~~~~~~l~--------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~-- 242 (362)
T 3goz_A 179 LA-----SKNCAELA--------KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSL-- 242 (362)
T ss_dssp GG-----GSCHHHHH--------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCH--
T ss_pred Cc-----hhhHHHHH--------HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHH--
Confidence 10 00000000 022334 489999998644433 3333443 4689998864321 111111
Q ss_pred cChhHHhhcCCCccEEEEccC
Q 012979 330 LNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 330 ~dl~~lL~~~PnL~~L~I~~~ 350 (452)
..+..+++.+++|++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHhcCCCccEEEeccC
Confidence 112466788899999999765
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.12 E-value=0.0007 Score=61.53 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=34.6
Q ss_pred CCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 156 CKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 156 c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
.++|++|+|.+..+ .. ..+..+++|++|+|.+-.+..-. ...++.++.|++|+|.++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCC
Confidence 35788888886333 22 22567788888888766554211 123455778888877553
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.11 E-value=0.0013 Score=67.82 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=5.9
Q ss_pred CCceEEEEe
Q 012979 82 RHLESVSIG 90 (452)
Q Consensus 82 ~~l~~L~L~ 90 (452)
..++.|+++
T Consensus 71 ~~l~~L~l~ 79 (454)
T 1jl5_A 71 RQAHELELN 79 (454)
T ss_dssp HTCSEEECT
T ss_pred cCCCEEEec
Confidence 456777666
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.05 E-value=0.00014 Score=64.65 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=27.1
Q ss_pred cCCCCcEEEeeceee-cCCCCCCC-CCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979 155 CCKSLVELEVKNAWL-SVDNLNQM-PMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~-d~~~l~~f-p~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
.|.+|++|+|.+..+ ..+.+..+ |+|++|+|.+-.+.+- .-+..+|.|++|+|.+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCS
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCC
Confidence 455666777665322 22333333 3566666655444431 1234455555555543
No 115
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.03 E-value=0.0006 Score=66.20 Aligned_cols=183 Identities=19% Similarity=0.180 Sum_probs=100.0
Q ss_pred hcCCceEEEeeecccccccccccccc-eecccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecc-hhHH--H
Q 012979 125 VCEELKFLSISDCWFQSCWRKSEVLA-FISSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLED-EDLD--K 197 (452)
Q Consensus 125 ~~~~L~eL~l~~~~~~~~~~~~~~L~-~~~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~-~~L~--~ 197 (452)
....|++|++++..... ....++ .....+++|++|+|.+..+ . +..+..+++|++|+|.+-.+.. ..+. .
T Consensus 115 ~~~~L~~L~Ls~n~i~~---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 115 TGLALSSLRLRNVSWAT---GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CCBCCSSCEEESCCCSS---TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred cCCCCCEEEeecccccc---hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence 35678999997432110 001111 1123688999999997433 2 2356789999999999876543 2232 2
Q ss_pred HhccCCcCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccc
Q 012979 198 VNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVA 277 (452)
Q Consensus 198 ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~ 277 (452)
.+..+|+|++|+|.++. .... ......+.-..++|+.|++........ .| ..
T Consensus 192 ~~~~l~~L~~L~Ls~N~-l~~l--------------~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~p--~~-------- 243 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTG-METP--------------TGVCAALAAAGVQPHSLDLSHNSLRAT---VN--PS-------- 243 (310)
T ss_dssp CTTSSCCCCSCBCCSSC-CCCH--------------HHHHHHHHHHTCCCSSEECTTSCCCCC---CC--SC--------
T ss_pred hhhcCCCCCEEECCCCC-CCch--------------HHHHHHHHhcCCCCCEEECCCCCCCcc---ch--hh--------
Confidence 23578999999997653 1110 000001112557888888753321100 00 00
Q ss_pred ccccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 278 NEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 278 ~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
...+.++++|+.|+++...+..+...+ .++++.|.+.-.. ..-+ ..+..+|+|++|++.++
T Consensus 244 -~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~----l~~~-----~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 244 -APRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNR----LNRA-----PQPDELPEVDNLTLDGN 304 (310)
T ss_dssp -CSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCC----CCSC-----CCTTSCCCCSCEECSST
T ss_pred -HHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCc----CCCC-----chhhhCCCccEEECcCC
Confidence 012223367888888765544332222 3688887753221 1111 12467899999999765
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.96 E-value=0.00083 Score=62.09 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=28.8
Q ss_pred CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979 157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
++|++|+|.+..+ .+..+..+++|++|+|.+-.+..-.- ..+..+++|++|+|.+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCS
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCC
Confidence 4566777765222 22345666777777776554432111 1123466666666654
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.93 E-value=5.3e-05 Score=68.82 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=36.1
Q ss_pred ecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 152 ISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 152 ~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
....+++|++|+|.+..+ +.+.+..+++|++|+|.+-.+. ++......+|.|++|+|.++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYN 103 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCC
Confidence 344567777777776433 3345556677777777776665 23334444677777777543
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.91 E-value=0.00063 Score=67.72 Aligned_cols=154 Identities=15% Similarity=0.072 Sum_probs=77.0
Q ss_pred CCCcEEEeeceee---cCCCCC-CCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEee
Q 012979 157 KSLVELEVKNAWL---SVDNLN-QMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWT 232 (452)
Q Consensus 157 ~~L~~L~L~~~~~---d~~~l~-~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~ 232 (452)
+.++.|+|.+..+ ....+. .+++|++|+|.+-.+..-.- ..+..++.|++|+|.++. ... +
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~----------~--- 103 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNH-LHT----------L--- 103 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC-CCE----------E---
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCc-CCc----------C---
Confidence 3567777775322 122344 67777777777655542111 123457777777775532 100 0
Q ss_pred ecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccccccc-ccc---ccC
Q 012979 233 VSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLI-NTF---PFG 308 (452)
Q Consensus 233 ~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~l~---~~~ 308 (452)
.. ..+ ...++|+.|++...... . .+.-.+.++.+|+.|+++...+..+. .++ ..+
T Consensus 104 -~~--~~~-~~l~~L~~L~L~~N~i~----------~-------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 104 -DE--FLF-SDLQALEVLLLYNNHIV----------V-------VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162 (361)
T ss_dssp -CT--TTT-TTCTTCCEEECCSSCCC----------E-------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----C
T ss_pred -CH--HHh-CCCcCCCEEECCCCccc----------E-------ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccC
Confidence 00 001 14567777776432111 0 01123456677777777754433221 112 346
Q ss_pred CceeEEEEEeccCCCCccccccChhHHhhcCCC--ccEEEEccCchh
Q 012979 309 KTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPN--LSSLTLGPRAWS 353 (452)
Q Consensus 309 p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~Pn--L~~L~I~~~~~~ 353 (452)
++|+.|.|.-.. ...+ +...+..+|+ |+.|++.++.|.
T Consensus 163 ~~L~~L~L~~N~----l~~l---~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 163 PKLMLLDLSSNK----LKKL---PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCCEEECCSSC----CCCC---CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcCCEEECCCCC----CCcc---CHHHhhhccHhhcceEEecCCCcc
Confidence 778887753221 1111 1245666776 478888887664
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.89 E-value=0.0008 Score=61.14 Aligned_cols=81 Identities=21% Similarity=0.163 Sum_probs=48.4
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCC--CCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVD--NLNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~--~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
.+.+++|++.+..- ....+.....+++|++|+|.+..+ ..+ .+..+++|++|+|.+-.+..-. ...+..+
T Consensus 27 ~~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETNSL------KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKL 99 (208)
T ss_dssp CTTCSEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred CCCCcEEEcCCCcc------CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCc
Confidence 35788888864321 111122234678888888886332 222 2567888888888876665211 1224568
Q ss_pred CcCCeEEEecc
Q 012979 203 PCLQVLNLVGV 213 (452)
Q Consensus 203 P~Le~L~L~~~ 213 (452)
+.|++|+|.++
T Consensus 100 ~~L~~L~L~~N 110 (208)
T 2o6s_A 100 TQLKELALNTN 110 (208)
T ss_dssp TTCCEEECCSS
T ss_pred cCCCEEEcCCC
Confidence 88888888653
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.83 E-value=0.0048 Score=63.49 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=24.8
Q ss_pred cccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 287 NLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 287 ~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
+|++|+++...+.. +-..+++++.|.+.-. .... ++. .+++|++|++...
T Consensus 318 ~L~~L~Ls~N~l~~---lp~~~~~L~~L~L~~N----~l~~----lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 318 SLEELNVSNNKLIE---LPALPPRLERLIASFN----HLAE----VPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp TCCEEECCSSCCSC---CCCCCTTCCEEECCSS----CCSC----CCC---CCTTCCEEECCSS
T ss_pred cCCEEECCCCcccc---ccccCCcCCEEECCCC----cccc----ccc---hhhhccEEECCCC
Confidence 66666666433322 1122466777664211 1111 122 3578888888654
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.81 E-value=0.022 Score=56.05 Aligned_cols=204 Identities=18% Similarity=0.128 Sum_probs=103.4
Q ss_pred CCceEEEeeecccccccccccccce-ecccCCCCcEEEeecee----ecCCCCCCCCCCceeee-eeE---eecchhHHH
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNAW----LSVDNLNQMPMLTKLTL-EFI---RLEDEDLDK 197 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~~----~d~~~l~~fp~Lr~L~L-~~v---~i~~~~L~~ 197 (452)
+++++|+|++..- ..+|. ...++++|++|+|.+.. ++...+..+++|+++.. .+- .+.+..
T Consensus 30 ~~l~~L~Ls~N~i-------~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~--- 99 (350)
T 4ay9_X 30 RNAIELRFVLTKL-------RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA--- 99 (350)
T ss_dssp TTCSEEEEESCCC-------SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS---
T ss_pred CCCCEEEccCCcC-------CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh---
Confidence 5789999974311 12333 23468899999998632 33334667787776444 322 223343
Q ss_pred HhccCCcCCeEEEecccccccCc---cccccccEEEeeecCCcc--eE-----EecCCceeEEEeeeecCCceee---eC
Q 012979 198 VNDCFPCLQVLNLVGVGGFRQPK---IHLLHLKSCLWTVSNAPL--SL-----AIYAPNLVKLELRCVKPKSLVL---QT 264 (452)
Q Consensus 198 ll~~cP~Le~L~L~~~~g~~~~~---l~~~sLr~l~l~~s~~~~--~l-----~~~aP~Le~L~l~~~~~~~l~i---~~ 264 (452)
+..+|+|++|.+.++.-...+. ..+.++..+ .+.+... .+ .-....|+.|.+.........- ..
T Consensus 100 -f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l--~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~ 176 (350)
T 4ay9_X 100 -FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL--DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176 (350)
T ss_dssp -BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE--EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT
T ss_pred -hhhccccccccccccccccCCchhhcccchhhhh--hhccccccccccccchhhcchhhhhhccccccccCCChhhccc
Confidence 4569999999997653222222 233344444 2222111 11 1112457777775432221100 11
Q ss_pred CccceEEEe----ecccccccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCC
Q 012979 265 PLLHDFCLS----LEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFP 340 (452)
Q Consensus 265 p~L~~~~l~----i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~P 340 (452)
..+..+.+. ++..+.-.+.++.+|++|+++...+..+-. ....++++|.+. .. ..-+. ++ -+..++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l-~~--~~l~~----lP-~l~~l~ 246 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRAR-ST--YNLKK----LP-TLEKLV 246 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECT-TC--TTCCC----CC-CTTTCC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhc-cC--CCcCc----CC-CchhCc
Confidence 122222211 112233345678899999998654433211 234566665531 11 11111 22 367899
Q ss_pred CccEEEEccCchhh
Q 012979 341 NLSSLTLGPRAWSA 354 (452)
Q Consensus 341 nL~~L~I~~~~~~~ 354 (452)
+|+.+++. ..|++
T Consensus 247 ~L~~l~l~-~~~~c 259 (350)
T 4ay9_X 247 ALMEASLT-YPSHC 259 (350)
T ss_dssp SCCEEECS-CHHHH
T ss_pred ChhhCcCC-CCccc
Confidence 99999995 44443
No 122
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.81 E-value=0.0017 Score=68.34 Aligned_cols=57 Identities=16% Similarity=-0.032 Sum_probs=32.4
Q ss_pred cCCCCcEEEeecee---ecC--CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 155 CCKSLVELEVKNAW---LSV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 155 ~c~~L~~L~L~~~~---~d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
.+++|+.|++.+.. ... .....+++|++|++....+.... .-...++.|+.+.+.++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~--~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC--SCCTTCTTCCEEECTTS
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhcccccccccc--ccccccccccchhhhhc
Confidence 46778888887521 111 12345677888877655443211 12345788888887543
No 123
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.71 E-value=0.0013 Score=69.41 Aligned_cols=130 Identities=18% Similarity=0.093 Sum_probs=75.1
Q ss_pred CCceEEEeeecccccccccccccc-eecccCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLA-FISSCCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~-~~~~~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
.++++|+|++..- ..++ ....++++|++|+|++.. +++..+..+++|++|+|.+-.+..-.- ..+.++
T Consensus 52 ~~~~~LdLs~N~i-------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNPL-------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGL 123 (635)
T ss_dssp TTCCEEECTTSCC-------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG-GGGTTC
T ss_pred cCCCEEEeeCCCC-------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH-HHhcCC
Confidence 4688888863211 1122 223467888999988643 334457788889998888765542111 224568
Q ss_pred CcCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccc
Q 012979 203 PCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRF 282 (452)
Q Consensus 203 P~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l 282 (452)
++|++|+|.++. .. .......-..++|+.|++...... .+. .+ -.+
T Consensus 124 ~~L~~L~Ls~N~-l~-----------------~l~~~~~~~L~~L~~L~Ls~N~l~----------~~~-----~~-~~~ 169 (635)
T 4g8a_A 124 SSLQKLVAVETN-LA-----------------SLENFPIGHLKTLKELNVAHNLIQ----------SFK-----LP-EYF 169 (635)
T ss_dssp TTCCEEECTTSC-CC-----------------CSTTCCCTTCTTCCEEECCSSCCC----------CCC-----CC-GGG
T ss_pred CCCCEEECCCCc-CC-----------------CCChhhhhcCcccCeeccccCccc----------cCC-----Cc-hhh
Confidence 888888886542 11 111111126788999998533211 100 01 134
Q ss_pred cccCcccEEEEeeccc
Q 012979 283 QEFRNLMNLQLESSSL 298 (452)
Q Consensus 283 ~~~~~L~~L~l~~~~~ 298 (452)
.++.+|++|+++...+
T Consensus 170 ~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 170 SNLTNLEHLDLSSNKI 185 (635)
T ss_dssp GGCTTCCEEECCSSCC
T ss_pred ccchhhhhhcccCccc
Confidence 5678999999986443
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.63 E-value=0.0021 Score=59.69 Aligned_cols=81 Identities=19% Similarity=0.116 Sum_probs=53.3
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
...++.|+|++... ....+.....+++|++|+|.+..+ .. ..+..+++|++|+|.+-.+..-. ...+..+
T Consensus 39 ~~~L~~L~Ls~n~i------~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l 111 (229)
T 3e6j_A 39 PTNAQILYLHDNQI------TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRL 111 (229)
T ss_dssp CTTCSEEECCSSCC------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred CCCCCEEEcCCCcc------CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC-hhHhCcc
Confidence 37788999974321 112233344678999999997433 22 23678899999999887665311 1234568
Q ss_pred CcCCeEEEecc
Q 012979 203 PCLQVLNLVGV 213 (452)
Q Consensus 203 P~Le~L~L~~~ 213 (452)
++|++|+|.++
T Consensus 112 ~~L~~L~Ls~N 122 (229)
T 3e6j_A 112 VHLKELFMCCN 122 (229)
T ss_dssp TTCCEEECCSS
T ss_pred hhhCeEeccCC
Confidence 99999999764
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.56 E-value=0.0026 Score=58.73 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=53.3
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
+.+++|.+.+..- ....+.....+++|+.|+|++.. +.+..+..+++|++|+|.+-.+..-. ..++..++
T Consensus 32 ~~l~~L~l~~n~i------~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNTI------KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-KSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSCC------CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCT
T ss_pred cCCCEEECCCCcC------CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC-HhHccCCC
Confidence 6788998864321 11112123467899999999743 33456888999999999887665211 12346689
Q ss_pred cCCeEEEecc
Q 012979 204 CLQVLNLVGV 213 (452)
Q Consensus 204 ~Le~L~L~~~ 213 (452)
+|++|+|.++
T Consensus 105 ~L~~L~L~~N 114 (220)
T 2v9t_B 105 SLQLLLLNAN 114 (220)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 9999999764
No 126
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.53 E-value=0.0011 Score=66.93 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=33.8
Q ss_pred CCCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979 1 MEEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCK 38 (452)
Q Consensus 1 ~~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~ 38 (452)
+++.||+|++.+|+++|+ ++|+++++.+||+|+.+..
T Consensus 18 ~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp TTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHT
T ss_pred hhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcC
Confidence 467899999999999995 9999999999999999754
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.52 E-value=0.0021 Score=59.36 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=24.3
Q ss_pred cCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEe
Q 012979 155 CCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLV 211 (452)
Q Consensus 155 ~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~ 211 (452)
.+++|+.|+|.+.. +.+..+..+++|++|+|.+-.+..-.- ..+..++.|++|+|.
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH-KMFKGLESLKTLMLR 113 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECT
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH-hHhcCCcCCCEEECC
Confidence 34555555555421 112234455555555555444432111 112335555555553
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.48 E-value=0.0076 Score=64.11 Aligned_cols=108 Identities=18% Similarity=0.092 Sum_probs=70.4
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
.+.|+.|+|++..- ..+| ..+++|+.|+|.+..+ ..+.+. .+|++|+|.+-.++. +.. .+++
T Consensus 79 ~~~L~~L~Ls~N~l-------~~ip---~~l~~L~~L~Ls~N~l~~ip~l~--~~L~~L~Ls~N~l~~--lp~---~l~~ 141 (571)
T 3cvr_A 79 PPQITVLEITQNAL-------ISLP---ELPASLEYLDACDNRLSTLPELP--ASLKHLDVDNNQLTM--LPE---LPAL 141 (571)
T ss_dssp CTTCSEEECCSSCC-------SCCC---CCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSC--CCC---CCTT
T ss_pred cCCCCEEECcCCCC-------cccc---cccCCCCEEEccCCCCCCcchhh--cCCCEEECCCCcCCC--CCC---cCcc
Confidence 47899999974321 1344 3478999999997433 233322 299999999877764 222 5899
Q ss_pred CCeEEEecccccccCccccccccEEEeeec---CCcceEEecCCceeEEEeeee
Q 012979 205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVS---NAPLSLAIYAPNLVKLELRCV 255 (452)
Q Consensus 205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~~ 255 (452)
|++|+|.++.-...+. .+++|+.+.+.-. ..+. +. ++|+.|++...
T Consensus 142 L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~lp~---l~-~~L~~L~Ls~N 190 (571)
T 3cvr_A 142 LEYINADNNQLTMLPE-LPTSLEVLSVRNNQLTFLPE---LP-ESLEALDVSTN 190 (571)
T ss_dssp CCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC---CC-TTCCEEECCSS
T ss_pred ccEEeCCCCccCcCCC-cCCCcCEEECCCCCCCCcch---hh-CCCCEEECcCC
Confidence 9999997764222333 5678999865432 2222 22 89999998543
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.46 E-value=0.0073 Score=59.57 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=35.6
Q ss_pred CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979 157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
+++++|+|.+..+ ....+..+++|++|+|.+-.+.+.-=......++.|+++.+.+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 5799999997433 2335788999999999875442110011234578887766544
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.45 E-value=0.0014 Score=58.05 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=48.3
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
...+++|.+.+..- . .++.+...+++|+.|+|++..+ +.+.+..+++|++|+|.+-.+..-. ..+...+|.
T Consensus 18 ~~~L~~L~l~~n~l----~---~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 89 (176)
T 1a9n_A 18 AVRDRELDLRGYKI----P---VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPD 89 (176)
T ss_dssp TTSCEEEECTTSCC----C---SCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred cCCceEEEeeCCCC----c---hhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCC
Confidence 45677887764321 1 1233333344788888886433 3356777888888888877665311 122345888
Q ss_pred CCeEEEecc
Q 012979 205 LQVLNLVGV 213 (452)
Q Consensus 205 Le~L~L~~~ 213 (452)
|++|+|.++
T Consensus 90 L~~L~L~~N 98 (176)
T 1a9n_A 90 LTELILTNN 98 (176)
T ss_dssp CCEEECCSC
T ss_pred CCEEECCCC
Confidence 888888654
No 131
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.42 E-value=0.0014 Score=66.11 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc
Q 012979 3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE 39 (452)
Q Consensus 3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~ 39 (452)
+.||+||+.+|+|+|+ ++|+++|+.|||+|+.+...
T Consensus 16 ~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp HHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred HHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 4699999999999995 99999999999999998644
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.39 E-value=0.004 Score=66.21 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=75.2
Q ss_pred CCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecC
Q 012979 178 PMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKP 257 (452)
Q Consensus 178 p~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~ 257 (452)
.+|++|+|.+-.++. +.. +..+++|++|+|.++. .. ..+..+. ..++|++|++.....
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~-l~-----------------~lp~~~~-~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-LR-----------------ALPPALA-ALRCLEVLQASDNAL 498 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-CC-----------------CCCGGGG-GCTTCCEEECCSSCC
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCccc-cc-----------------ccchhhh-cCCCCCEEECCCCCC
Confidence 358888888776654 333 5678999999997642 11 1111222 567888888743221
Q ss_pred CceeeeCCccceEEEeecccccccccccCcccEEEEeecccccc--ccccccCCceeEEEEEeccCCCCccccccChhHH
Q 012979 258 KSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL--INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVL 335 (452)
Q Consensus 258 ~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~l 335 (452)
...| .+.++++|+.|+++...+..+ ...+..+++|+.|.+.-.. ..........+
T Consensus 499 -----------------~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~----l~~~~~~~~~l 555 (567)
T 1dce_A 499 -----------------ENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS----LCQEEGIQERL 555 (567)
T ss_dssp -----------------CCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG----GGGSSSCTTHH
T ss_pred -----------------CCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc----CCCCccHHHHH
Confidence 1122 456788888898886555544 3455678888887763221 11110112356
Q ss_pred hhcCCCccEEEE
Q 012979 336 FDVFPNLSSLTL 347 (452)
Q Consensus 336 L~~~PnL~~L~I 347 (452)
+..+|+|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 777899998863
No 133
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.30 E-value=0.0012 Score=66.49 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=31.9
Q ss_pred CCCcHH----HHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979 3 EHLPQP----LILEILSRLTDSADLARCRVVSKTLNSLCK 38 (452)
Q Consensus 3 s~LPd~----lL~~ILS~L~~~kD~arts~lSkrWr~l~~ 38 (452)
+.||+| |+.+||++| |++|++++++|||+|+.+..
T Consensus 12 ~~lp~e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 12 TALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred HHCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence 569999 999999999 59999999999999997753
No 134
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.27 E-value=0.0014 Score=58.93 Aligned_cols=130 Identities=16% Similarity=0.100 Sum_probs=82.5
Q ss_pred CCCcHHHHHHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeeccccccccc
Q 012979 66 RVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRK 145 (452)
Q Consensus 66 ~~~~~~~~v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~ 145 (452)
....+.+++..++...+.+++|+|..+..+++. ....+..-+ .....|++|+|++..-.. ..
T Consensus 20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~---------------g~~~l~~~L-~~~~~L~~L~Ls~n~i~~--~g 81 (185)
T 1io0_A 20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVP---------------TLKACAEAL-KTNTYVKKFSIVGTRSND--PV 81 (185)
T ss_dssp CCCCHHHHHHHHHTTCTTCCEEECTTCTTCCHH---------------HHHHHHHHH-TTCCSCCEEECTTSCCCH--HH
T ss_pred CccHHHHHHHHHHhcCCCCCEEEecCCCCCCHH---------------HHHHHHHHH-HhCCCcCEEECcCCCCCh--HH
Confidence 346677888889999999999999732111100 011121111 125789999997431100 00
Q ss_pred ccccceecccCCCCcEEEeeceeecCC-------CCCCCCCCceeee--eeEeecchh---HHHHhccCCcCCeEEEecc
Q 012979 146 SEVLAFISSCCKSLVELEVKNAWLSVD-------NLNQMPMLTKLTL--EFIRLEDED---LDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 146 ~~~L~~~~~~c~~L~~L~L~~~~~d~~-------~l~~fp~Lr~L~L--~~v~i~~~~---L~~ll~~cP~Le~L~L~~~ 213 (452)
...+.-....+++|++|+|++..+... .+...++|++|+| .+-.|.++. +...+..++.|++|+|.++
T Consensus 82 ~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 82 AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 112233334567899999998655322 2456789999999 777887654 6777888999999999754
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.19 E-value=0.0048 Score=61.24 Aligned_cols=147 Identities=21% Similarity=0.189 Sum_probs=85.7
Q ss_pred cEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhc-cCCcCCeEEEecccccccCccccccccEEEeeecCCc
Q 012979 160 VELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVND-CFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAP 237 (452)
Q Consensus 160 ~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~-~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~ 237 (452)
+.+++.+.-+ ..|. .-.++|++|+|.+-.++.-.-.. +. .+++|++|+|.++. ... +..
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~-~~~~l~~L~~L~L~~N~-i~~--------------i~~-- 81 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEW-TPTRLTNLHSLLLSHNH-LNF--------------ISS-- 81 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTS-SSSCCTTCCEEECCSSC-CCE--------------ECT--
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhh-hhhcccccCEEECCCCc-CCc--------------cCh--
Confidence 5667665322 2222 23467999999887776432222 23 79999999996542 110 000
Q ss_pred ceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccc-ccccccCCceeEEEE
Q 012979 238 LSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKV 316 (452)
Q Consensus 238 ~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L 316 (452)
..+. ..++|++|++..... .. .+.-.+.++.+|++|+++...+..+ ...+..+++|+.|.|
T Consensus 82 ~~~~-~l~~L~~L~Ls~N~l----------~~-------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 82 EAFV-PVPNLRYLDLSSNHL----------HT-------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTTT-TCTTCCEEECCSSCC----------CE-------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred hhcc-CCCCCCEEECCCCcC----------Cc-------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 0122 568899999854321 11 1122456788999999987555433 234667899999886
Q ss_pred EeccCCCCccccccChhHHh---hcCCCccEEEEccC
Q 012979 317 ELLKPGEPIGMKNLNLGVLF---DVFPNLSSLTLGPR 350 (452)
Q Consensus 317 ~~~~~~~~~~~l~~dl~~lL---~~~PnL~~L~I~~~ 350 (452)
.-.. ...+ +..++ ..+|+|+.|++...
T Consensus 144 ~~N~----l~~l---~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 144 SQNQ----ISRF---PVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CSSC----CCSC---CGGGTC----CTTCCEEECCSS
T ss_pred CCCc----CCee---CHHHhcCcccCCcCCEEECCCC
Confidence 4221 1111 12333 67999999999765
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.13 E-value=0.0067 Score=59.25 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=38.4
Q ss_pred ccccccCccc-EEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEE
Q 012979 280 IRFQEFRNLM-NLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL 347 (452)
Q Consensus 280 ~~l~~~~~L~-~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I 347 (452)
-.+.+|.+|+ ++.+.. ....+ ...+..|++|+.|.+. +..... + ....+..+++|++++.
T Consensus 267 ~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~-~n~i~~---I---~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 267 RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT-GDKITT---L---GDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC-SSCCCE---E---CTTTTCTTCCCCEEEC
T ss_pred HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC-CCccCc---c---chhhhcCCcchhhhcc
Confidence 4677888998 999974 33322 3557789999998752 111111 1 0245678899998874
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.08 E-value=0.029 Score=54.61 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=42.8
Q ss_pred ccccccccCcccEEEEeecccccc-ccccccCCcee-EEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 278 NEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIK-KLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 278 ~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lk-kL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
+.-.+.+|.+|+++++... +..+ ...+..|++|+ .|.+ +....... ..-+..|++|++|++.+.
T Consensus 242 ~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l--~~~l~~I~------~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL--PASVTAIE------FGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE--CTTCCEEC------TTTTTTCTTEEEEEECSS
T ss_pred cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE--cccceEEc------hhhhhCCccCCEEEeCCC
Confidence 4446778999999999843 2222 34567899999 9775 32222111 255678999999999654
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.62 E-value=0.00047 Score=69.43 Aligned_cols=58 Identities=19% Similarity=0.116 Sum_probs=33.3
Q ss_pred CCCCcEEEeeceeecCCC---C-CCCCCCceeeeeeEeecchhHHHH---h-ccCCcCCeEEEecc
Q 012979 156 CKSLVELEVKNAWLSVDN---L-NQMPMLTKLTLEFIRLEDEDLDKV---N-DCFPCLQVLNLVGV 213 (452)
Q Consensus 156 c~~L~~L~L~~~~~d~~~---l-~~fp~Lr~L~L~~v~i~~~~L~~l---l-~~cP~Le~L~L~~~ 213 (452)
+++|++|+|.++.+...+ + ..+++|++|+|.+-.+++.....+ + ..++.|++|+|.+|
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n 165 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN 165 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence 457777777764332211 1 245677777777766665444332 2 24667777777554
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.38 E-value=0.01 Score=53.27 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=28.1
Q ss_pred CCcEEEeeceee-cCC---CCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979 158 SLVELEVKNAWL-SVD---NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 158 ~L~~L~L~~~~~-d~~---~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
+|++|+|.+..+ ..+ .+..+++|++|+|.+-.++.-. ...+..++.|++|+|.+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGE 87 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCC
Confidence 667777765322 111 1456666777776665554211 11234466666666644
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.28 E-value=0.017 Score=52.12 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=13.8
Q ss_pred CCCceeeeeeEeecchhHHHHhccCCcCCeEEEe
Q 012979 178 PMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLV 211 (452)
Q Consensus 178 p~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~ 211 (452)
++|++|+|.+-.+.. +...+..+++|++|+|.
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls 62 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLS 62 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECC
Confidence 445555554443331 11223445555555554
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.03 E-value=0.022 Score=60.46 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=66.5
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC-CCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC 204 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~ 204 (452)
..|+.|++++..- ..+|. ...+++|+.|+|++..+ .. ..++.+++|++|+|.+-.++. +. -+..+|+
T Consensus 441 ~~L~~L~Ls~n~l-------~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~ 509 (567)
T 1dce_A 441 ADVRVLHLAHKDL-------TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPR 509 (567)
T ss_dssp TTCSEEECTTSCC-------SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSS
T ss_pred cCceEEEecCCCC-------CCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCC
Confidence 4577787763311 12344 44677888888886333 22 346778888888888766664 33 3567888
Q ss_pred CCeEEEeccccccc--Cc--cccccccEEEeee---cCCcc---eEEecCCceeEEEe
Q 012979 205 LQVLNLVGVGGFRQ--PK--IHLLHLKSCLWTV---SNAPL---SLAIYAPNLVKLEL 252 (452)
Q Consensus 205 Le~L~L~~~~g~~~--~~--l~~~sLr~l~l~~---s~~~~---~l~~~aP~Le~L~l 252 (452)
|++|+|.++.-... |. -.+++|+.+.+.- ++... .+.-..|+|+.|++
T Consensus 510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888866531111 22 2367777774431 11111 12224788888853
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=94.95 E-value=0.037 Score=49.73 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=52.5
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
+.+++|.+.+..- ..+|.....+++|+.|+|.+..+ . +..+..+++|++|+|.+-.+..-.- ..+..+|
T Consensus 31 ~~l~~L~L~~n~i-------~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQF-------TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLK 102 (193)
T ss_dssp TTCCEEECCSSCC-------CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCT
T ss_pred CCCCEEECCCCcC-------chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCC
Confidence 5788998864321 12333345688999999997433 2 3347788999999998876653221 1235689
Q ss_pred cCCeEEEecc
Q 012979 204 CLQVLNLVGV 213 (452)
Q Consensus 204 ~Le~L~L~~~ 213 (452)
+|++|+|.++
T Consensus 103 ~L~~L~L~~N 112 (193)
T 2wfh_A 103 SLRLLSLHGN 112 (193)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 9999999764
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.87 E-value=0.023 Score=49.88 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=14.9
Q ss_pred CCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEee
Q 012979 157 KSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRL 190 (452)
Q Consensus 157 ~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i 190 (452)
++|++|+|.+..+ .. ..+..+++|++|+|.+-.+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 64 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI 64 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc
Confidence 3455555554211 11 1234455555555544333
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=94.72 E-value=0.0084 Score=53.96 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=25.0
Q ss_pred CCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEec
Q 012979 156 CKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 156 c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~ 212 (452)
+++|++|+|.+..+ +.+++..+++|++|+|.+-.+.+ ..+. .+..+|+|++|.+.+
T Consensus 92 ~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~-~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEID-KLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHH-HHTTTTTCSEEEECS
T ss_pred CCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHH-HHhcCCCCCEEEecC
Confidence 34555555554322 12233444555555555554443 1121 234455555555543
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.60 E-value=0.042 Score=48.19 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=53.6
Q ss_pred cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979 126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF 202 (452)
Q Consensus 126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c 202 (452)
.+.+++|++.+.... ...+.....+++|++|+|.+..+ .. ..+..+++|++|+|.+-.+..-. ...+..+
T Consensus 27 ~~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP-NGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred CCCCcEEEeCCCccc------EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC-HHHhhCC
Confidence 367899999743211 11122234678999999997433 22 23678999999999887665321 1234669
Q ss_pred CcCCeEEEecc
Q 012979 203 PCLQVLNLVGV 213 (452)
Q Consensus 203 P~Le~L~L~~~ 213 (452)
+.|++|+|.++
T Consensus 100 ~~L~~L~l~~N 110 (177)
T 2o6r_A 100 TQLKELALDTN 110 (177)
T ss_dssp TTCCEEECCSS
T ss_pred cccCEEECcCC
Confidence 99999999764
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.12 E-value=0.19 Score=50.76 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=7.3
Q ss_pred cCCcCCeEEEe
Q 012979 201 CFPCLQVLNLV 211 (452)
Q Consensus 201 ~cP~Le~L~L~ 211 (452)
.|++|+++.|.
T Consensus 224 ~~~~L~~l~l~ 234 (401)
T 4fdw_A 224 KTSQLKTIEIP 234 (401)
T ss_dssp TCTTCCCEECC
T ss_pred CCCCCCEEecC
Confidence 37777777763
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.08 E-value=0.017 Score=63.21 Aligned_cols=96 Identities=21% Similarity=0.170 Sum_probs=43.0
Q ss_pred cCCCCcEEEeeceee-cC-CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc--cccccccEEE
Q 012979 155 CCKSLVELEVKNAWL-SV-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK--IHLLHLKSCL 230 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~-d~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~--l~~~sLr~l~ 230 (452)
.++.|+.|+|.+..+ .. +.+..+++|++|+|.+-.+. .+..-+..+++|++|+|.++.-...|. -.+++|+++.
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 445566666654222 22 23445566666666554444 121223445666666664432111111 1244555553
Q ss_pred eee---cCCcceEEecCCceeEEEee
Q 012979 231 WTV---SNAPLSLAIYAPNLVKLELR 253 (452)
Q Consensus 231 l~~---s~~~~~l~~~aP~Le~L~l~ 253 (452)
+.- +..+..+. ..++|+.|++.
T Consensus 300 L~~N~l~~lp~~~~-~l~~L~~L~L~ 324 (727)
T 4b8c_D 300 FFDNMVTTLPWEFG-NLCNLQFLGVE 324 (727)
T ss_dssp CCSSCCCCCCSSTT-SCTTCCCEECT
T ss_pred CCCCCCCccChhhh-cCCCccEEeCC
Confidence 321 11222222 55677777764
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=93.81 E-value=0.043 Score=48.48 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=41.1
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCC--CCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVD--NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~--~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
..+++|+|++..- ....|.....+++|+.|+|.+..+ ..+ .+..+++|++|+|.+-.+..-. ...+..++
T Consensus 33 ~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNNQI------TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLK 105 (174)
T ss_dssp TTCSEEECCSSCC------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCT
T ss_pred CCCcEEEeCCCCc------cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhcccc
Confidence 5667777753211 111122233566777777775322 222 2456777777777665554211 12234477
Q ss_pred cCCeEEEec
Q 012979 204 CLQVLNLVG 212 (452)
Q Consensus 204 ~Le~L~L~~ 212 (452)
+|++|.|.+
T Consensus 106 ~L~~L~L~~ 114 (174)
T 2r9u_A 106 SLTHIYLYN 114 (174)
T ss_dssp TCSEEECCS
T ss_pred CCCEEEeCC
Confidence 777777754
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.77 E-value=0.18 Score=50.88 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=36.7
Q ss_pred cccccccCcccEEEEeecccc------ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979 279 EIRFQEFRNLMNLQLESSSLS------SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP 349 (452)
Q Consensus 279 ~~~l~~~~~L~~L~l~~~~~~------~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~ 349 (452)
.-.+.+|.+|+++.+...... -....+..|++|+.+.+ +....... ...+..|++|++++|..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l--~~~i~~I~------~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI--PESIRILG------QGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC--CTTCCEEC------TTTTTTCCSCCEEEECT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe--CCceEEEh------hhhhcCCCCccEEEECc
Confidence 345667888888888643221 11344667888888664 32221111 14456778888888843
No 150
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=93.71 E-value=0.052 Score=48.54 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=25.8
Q ss_pred cCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979 155 CCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 155 ~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
.+++|++|+|.+..+ .+..+..+++|++|+|.+-.+..-.- ..+..+|.|++|+|.+
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYD 111 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCS
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCC
Confidence 345555555554221 12234555555555555544432111 1123355555555543
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.47 E-value=0.061 Score=47.18 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=41.3
Q ss_pred CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979 127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP 203 (452)
Q Consensus 127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP 203 (452)
+.+++|+|++..- ....+....++++|++|+|.+..+ .. ..+..+++|++|+|.+-.+..-. ...+..++
T Consensus 30 ~~l~~L~L~~N~i------~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYDNQI------TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLK 102 (170)
T ss_dssp TTCSEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCT
T ss_pred CCCcEEEcCCCcC------CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCC
Confidence 5667777753211 111122233566777777775322 21 22456777777777665554211 11234467
Q ss_pred cCCeEEEec
Q 012979 204 CLQVLNLVG 212 (452)
Q Consensus 204 ~Le~L~L~~ 212 (452)
+|++|.|.+
T Consensus 103 ~L~~L~L~~ 111 (170)
T 3g39_A 103 SLTHIWLLN 111 (170)
T ss_dssp TCCEEECCS
T ss_pred CCCEEEeCC
Confidence 777777754
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=92.83 E-value=0.026 Score=61.61 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=28.5
Q ss_pred ccCCCCcEEEeeceee-cC-CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 154 SCCKSLVELEVKNAWL-SV-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~-d~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
+.+++|+.|+|.+..+ .. +.+..+++|++|+|.+-.+. .+..-+..+++|++|+|.++
T Consensus 244 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSS
T ss_pred cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCC
Confidence 3455666666664322 11 23455566666666555444 12112344566666666443
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=92.64 E-value=0.019 Score=57.45 Aligned_cols=137 Identities=18% Similarity=0.091 Sum_probs=77.0
Q ss_pred HHHHHHhcC-CCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccce
Q 012979 73 ILENLVRNS-RHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAF 151 (452)
Q Consensus 73 ~v~~~l~~~-~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~ 151 (452)
.+..++... +.++.|+|+.+ .+ ....+ .-+..+.+.+++|+|++..-.. .....+.-
T Consensus 91 ~l~~~L~~~~~~L~~L~Ls~n------~l-------------~~~~~-~~l~~~L~~L~~L~Ls~n~l~~--~~~~~L~~ 148 (372)
T 3un9_A 91 VVAAVLGSGRHALDEVNLASC------QL-------------DPAGL-RTLLPVFLRARKLGLQLNSLGP--EACKDLRD 148 (372)
T ss_dssp HHHHHHSSCSSCEEEEECTTC------CC-------------CHHHH-HHTHHHHHTEEEEECCSSCCCH--HHHHHHHH
T ss_pred HHHHHHhhCCCCceEEEecCC------CC-------------CHHHH-HHHHHHHHhccHhhcCCCCCCH--HHHHHHHH
Confidence 455566654 69999988832 11 11112 1123334578889887432110 00011111
Q ss_pred ec-ccCCCCcEEEeeceeecCC-------CCCCCCCCceeeeeeEeecchh---HHHHhccCCcCCeEEEecccccccC-
Q 012979 152 IS-SCCKSLVELEVKNAWLSVD-------NLNQMPMLTKLTLEFIRLEDED---LDKVNDCFPCLQVLNLVGVGGFRQP- 219 (452)
Q Consensus 152 ~~-~~c~~L~~L~L~~~~~d~~-------~l~~fp~Lr~L~L~~v~i~~~~---L~~ll~~cP~Le~L~L~~~~g~~~~- 219 (452)
.. ..+.+|++|+|+++.+... .+...++|++|+|.+-.+.+.. |...+..++.|++|+|.+|. ....
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence 11 2466899999987544211 1356788999999888787654 44556778889999997653 2111
Q ss_pred --cc-----ccccccEEEee
Q 012979 220 --KI-----HLLHLKSCLWT 232 (452)
Q Consensus 220 --~l-----~~~sLr~l~l~ 232 (452)
.+ ..++|+.+.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLY 247 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECT
T ss_pred HHHHHHHHHhCCCCCEEecc
Confidence 11 24678887443
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.32 E-value=0.34 Score=48.23 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=30.2
Q ss_pred ccCCCCcEEEeec--eeecCCCCCCCCCCceeeeee--EeecchhHHHHhccCCcCCeEEEe
Q 012979 154 SCCKSLVELEVKN--AWLSVDNLNQMPMLTKLTLEF--IRLEDEDLDKVNDCFPCLQVLNLV 211 (452)
Q Consensus 154 ~~c~~L~~L~L~~--~~~d~~~l~~fp~Lr~L~L~~--v~i~~~~L~~ll~~cP~Le~L~L~ 211 (452)
.+|++|+.+.|.+ ..++...+..+++|+++.|.. ..+.+.++ +.|+.|+.+.+.
T Consensus 159 ~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F----~~~~~L~~i~~~ 216 (394)
T 4fs7_A 159 ATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCF----AECILLENMEFP 216 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTT----TTCTTCCBCCCC
T ss_pred cccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchhh----ccccccceeecC
Confidence 3577777777764 234344455667777776632 12233333 347777777663
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=90.36 E-value=0.21 Score=43.64 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=41.1
Q ss_pred CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
++|+.|+|.+..+ .+..+..+++|++|+|.+-.+..-. ...+..+|.|++|+|.++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCC
Confidence 6899999997433 2344788999999999987776321 123466999999999764
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=90.04 E-value=0.1 Score=49.92 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=25.5
Q ss_pred ccCCCCcEEEeeceee-cCCCCCCCC--CCceeeeeeEeecc------hhHHHHhccCCcCCeEE
Q 012979 154 SCCKSLVELEVKNAWL-SVDNLNQMP--MLTKLTLEFIRLED------EDLDKVNDCFPCLQVLN 209 (452)
Q Consensus 154 ~~c~~L~~L~L~~~~~-d~~~l~~fp--~Lr~L~L~~v~i~~------~~L~~ll~~cP~Le~L~ 209 (452)
..+++|+.|+|++..+ +...+..+. +|++|.|.+-.+.+ .....+++.+|.|+.|+
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3456666666654222 222222222 55555555443332 12234555566666554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=89.86 E-value=0.052 Score=48.51 Aligned_cols=83 Identities=11% Similarity=0.014 Sum_probs=54.9
Q ss_pred cCCceEEEeeec-ccccccccccccceecccCCCCcEEEeeceeecCCC-------CCCCCCCceeeeeeEeecchh---
Q 012979 126 CEELKFLSISDC-WFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDN-------LNQMPMLTKLTLEFIRLEDED--- 194 (452)
Q Consensus 126 ~~~L~eL~l~~~-~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~~~-------l~~fp~Lr~L~L~~v~i~~~~--- 194 (452)
...|++|+|.+. .-.. .....+.-....+++|++|+|++..+...+ +...++|++|+|.+-.|.++.
T Consensus 35 ~~~L~~L~L~~n~~i~~--~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPV--PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCH--HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCH--HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 578999999743 2210 001122233345788999999975553222 235588999999998888754
Q ss_pred HHHHhccCCcCCeEEE
Q 012979 195 LDKVNDCFPCLQVLNL 210 (452)
Q Consensus 195 L~~ll~~cP~Le~L~L 210 (452)
|...+..++.|++|+|
T Consensus 113 l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 113 LVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHGGGGCSSCCEEEC
T ss_pred HHHHHHhCCCceEEEe
Confidence 5555777889999999
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=89.70 E-value=0.26 Score=43.32 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=41.1
Q ss_pred CCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979 157 KSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 157 ~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~ 213 (452)
++|++|+|.+..+ . +..+..+++|++|+|.+-.+..-. ..++..+++|++|+|.++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCC
Confidence 6899999997433 2 335789999999999887775311 123466899999999764
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.18 E-value=1.5 Score=43.37 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=22.3
Q ss_pred cccccCcccEEEEeecccccc-ccccccCCceeEEEE
Q 012979 281 RFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKV 316 (452)
Q Consensus 281 ~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L 316 (452)
.+.+|.+|+++.|... ...+ ..++..|++|+.+.+
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 5667888888887632 2221 345677888888664
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=87.01 E-value=0.57 Score=45.39 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=16.9
Q ss_pred cCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEee
Q 012979 155 CCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRL 190 (452)
Q Consensus 155 ~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i 190 (452)
++++|+.|+|.+.. +.+..+..+++|++|+|.+-.+
T Consensus 54 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 54 GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 34555555555421 1122344555555555554444
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=86.52 E-value=0.44 Score=46.25 Aligned_cols=81 Identities=22% Similarity=0.140 Sum_probs=50.4
Q ss_pred cceecccCCCCcEEEeec-eee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc--cc
Q 012979 149 LAFISSCCKSLVELEVKN-AWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK--IH 222 (452)
Q Consensus 149 L~~~~~~c~~L~~L~L~~-~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~--l~ 222 (452)
+|. ...+.+|++|+|.+ ..+ .+..+..+++|++|+|.+-.+..-. ...+..+++|+.|+|.++.-...+. ..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 444 44567899999974 333 2335788999999999887665311 1234569999999997653222221 22
Q ss_pred cccccEEEe
Q 012979 223 LLHLKSCLW 231 (452)
Q Consensus 223 ~~sLr~l~l 231 (452)
..+|+.+.+
T Consensus 102 ~~~L~~l~l 110 (347)
T 2ifg_A 102 GLSLQELVL 110 (347)
T ss_dssp SCCCCEEEC
T ss_pred cCCceEEEe
Confidence 233777644
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=83.91 E-value=0.63 Score=42.31 Aligned_cols=129 Identities=13% Similarity=0.093 Sum_probs=79.3
Q ss_pred CCCcHHHHHHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeeccccccccc
Q 012979 66 RVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRK 145 (452)
Q Consensus 66 ~~~~~~~~v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~ 145 (452)
..+++.+++.+++...+.+++|.|.....++ | .....++.=|. ...+|++|.|.+..-.. ..
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~ig------------d---~ga~~la~aL~-~N~~L~~L~L~~n~igd--~g 86 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRVS------------K---ERIRSLIEAAC-NSKHIEKFSLANTAISD--SE 86 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSSC------------H---HHHHHHHHHHT-TCSCCCEEECTTSCCBH--HH
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCCC------------H---HHHHHHHHHHh-hCCCcCEEEccCCCCCh--HH
Confidence 4577888899999989999999887211111 0 00111111111 35889999997432110 01
Q ss_pred ccccceecccCCCCcEEEeeceeecCCC-------CCCCCCCceeeeeeE---eecc---hhHHHHhccCCcCCeEEEec
Q 012979 146 SEVLAFISSCCKSLVELEVKNAWLSVDN-------LNQMPMLTKLTLEFI---RLED---EDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 146 ~~~L~~~~~~c~~L~~L~L~~~~~d~~~-------l~~fp~Lr~L~L~~v---~i~~---~~L~~ll~~cP~Le~L~L~~ 212 (452)
...+.-.+..-++|++|+|++..+...+ +..=..|++|.|.+- .+.+ ..+...|...+.|+.|.+..
T Consensus 87 a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 87 ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 1233333445678999999976664333 334467999999642 4454 36788889999999999953
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=79.14 E-value=0.49 Score=45.09 Aligned_cols=63 Identities=30% Similarity=0.402 Sum_probs=43.3
Q ss_pred cceecccCCCCcEEEeeceee-cCCC----CCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEecc
Q 012979 149 LAFISSCCKSLVELEVKNAWL-SVDN----LNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVGV 213 (452)
Q Consensus 149 L~~~~~~c~~L~~L~L~~~~~-d~~~----l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~~ 213 (452)
++.+...++.|+.|+|++..+ +.++ +..||+|++|+|.+-.+.+ +.+..+ ..+ .|++|.|.++
T Consensus 162 l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~N 230 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGN 230 (267)
T ss_dssp HHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTS
T ss_pred HHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCC
Confidence 344445688899999996333 2222 2478999999998887775 356553 444 8999999764
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=72.44 E-value=2.9 Score=41.35 Aligned_cols=143 Identities=10% Similarity=0.185 Sum_probs=71.5
Q ss_pred CCCCcEEEeec--eeecCCCCCCCCCCceeeeee--EeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEe
Q 012979 156 CKSLVELEVKN--AWLSVDNLNQMPMLTKLTLEF--IRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLW 231 (452)
Q Consensus 156 c~~L~~L~L~~--~~~d~~~l~~fp~Lr~L~L~~--v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l 231 (452)
+..+....+.. ..++..++..+.+|+++.+-. +.+...++. .|+.|+++.+... +. .+
T Consensus 241 ~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~----~c~~L~~i~l~~~--i~----------~I-- 302 (394)
T 4gt6_A 241 QREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFM----NCPALQDIEFSSR--IT----------EL-- 302 (394)
T ss_dssp TCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTT----TCTTCCEEECCTT--CC----------EE--
T ss_pred ccccceEEcCCcceEcccceeeecccccEEecccccceecCcccc----cccccccccCCCc--cc----------cc--
Confidence 34455555543 234444566778888888742 234444544 4999999888321 11 11
Q ss_pred eecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccc-ccccccCCc
Q 012979 232 TVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKT 310 (452)
Q Consensus 232 ~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~ 310 (452)
.. ... ..+++|+.+.+. . .++.+ +.-.+.+|.+|+++.|..+ ...+ ...+..|++
T Consensus 303 --~~--~aF-~~c~~L~~i~lp----~-------~v~~I-------~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 303 --PE--SVF-AGCISLKSIDIP----E-------GITQI-------LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp --CT--TTT-TTCTTCCEEECC----T-------TCCEE-------CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred --Cc--eee-cCCCCcCEEEeC----C-------cccEe-------hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 00 011 156777777762 1 11221 1235678888998888632 2222 455778889
Q ss_pred eeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979 311 IKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR 350 (452)
Q Consensus 311 lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~ 350 (452)
|+.+.+. ..... ... +..+.+|+.+.|.++
T Consensus 359 L~~i~~~--~~~~~-------~~~-~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 359 LNNIEYS--GSRSQ-------WNA-ISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEEEES--SCHHH-------HHT-CBCCCCC--------
T ss_pred CCEEEEC--Cceee-------hhh-hhccCCCCEEEeCCC
Confidence 9987642 21110 112 234567888887554
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=44.48 E-value=20 Score=35.12 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=37.8
Q ss_pred ccCCCCcEEEeec--eeecCCCCCCCCCCceeeeee--EeecchhHHHHhccCCcCCeEEEe
Q 012979 154 SCCKSLVELEVKN--AWLSVDNLNQMPMLTKLTLEF--IRLEDEDLDKVNDCFPCLQVLNLV 211 (452)
Q Consensus 154 ~~c~~L~~L~L~~--~~~d~~~l~~fp~Lr~L~L~~--v~i~~~~L~~ll~~cP~Le~L~L~ 211 (452)
.+|..|+.+.+.. ..+....+..+.+|+++.|-. ..|.+.++.. |.+|+.+.|-
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~----C~~L~~i~ip 342 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAG----CEQLERIAIP 342 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTT----CTTCCEEEEC
T ss_pred ccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhC----CCCCCEEEEC
Confidence 4688899888875 245445667788899888842 2345555544 9999999883
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=35.14 E-value=11 Score=33.92 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=33.6
Q ss_pred CCCCcEEEeeceeecCCC---C----CCCCCCceeeeeeEeecchh---HHHHhccCCcCCeEEEe
Q 012979 156 CKSLVELEVKNAWLSVDN---L----NQMPMLTKLTLEFIRLEDED---LDKVNDCFPCLQVLNLV 211 (452)
Q Consensus 156 c~~L~~L~L~~~~~d~~~---l----~~fp~Lr~L~L~~v~i~~~~---L~~ll~~cP~Le~L~L~ 211 (452)
-.+|++|+|++..+...+ + ..=..|++|+|..-.|.++. |...|.....|++|.|.
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECC
Confidence 347888888775553222 1 12366777777777776543 33445556667777774
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=28.94 E-value=33 Score=33.05 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=39.2
Q ss_pred ccCCCCcEEEeec--eeecCCCCCCCCCCceeeeee--E-eecchhHHHHhccCCcCCeEEEe
Q 012979 154 SCCKSLVELEVKN--AWLSVDNLNQMPMLTKLTLEF--I-RLEDEDLDKVNDCFPCLQVLNLV 211 (452)
Q Consensus 154 ~~c~~L~~L~L~~--~~~d~~~l~~fp~Lr~L~L~~--v-~i~~~~L~~ll~~cP~Le~L~L~ 211 (452)
.+|.+|+.+.+.. ..+....+..+++|+++.+.. + .|.+.++.. |++|+.+.|-
T Consensus 260 ~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~----c~~L~~i~lp 318 (379)
T 4h09_A 260 QNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD----CVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT----CTTCCEEECC
T ss_pred ceeehhccccccccceeccccccccccccccccccccccceehhhhhcC----CCCCCEEEcC
Confidence 4688999999875 234445567889999999854 2 355666654 9999999983
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=22.29 E-value=82 Score=30.17 Aligned_cols=55 Identities=13% Similarity=-0.008 Sum_probs=38.7
Q ss_pred ccCCCCcEEEeec--eeecCCCCCCCCCCceeeeeeE--eecchhHHHHhccCCcCCeEEEec
Q 012979 154 SCCKSLVELEVKN--AWLSVDNLNQMPMLTKLTLEFI--RLEDEDLDKVNDCFPCLQVLNLVG 212 (452)
Q Consensus 154 ~~c~~L~~L~L~~--~~~d~~~l~~fp~Lr~L~L~~v--~i~~~~L~~ll~~cP~Le~L~L~~ 212 (452)
.+|..|+.+.+.. ..+....+..+.+|+++.+..- .+...++ ..|++|+.+.+.+
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF----~~c~~L~~i~l~~ 295 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLC----SGCSNLTKVVMDN 295 (379)
T ss_dssp TTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTT----TTCTTCCEEEECC
T ss_pred cCCccceEEEcCCCccEeCccccceeehhccccccccceecccccc----ccccccccccccc
Confidence 4789999999864 3455556677889999988431 2233343 5699999999953
Done!