BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012981
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 190/418 (45%), Gaps = 18/418 (4%)
Query: 23 NNNHQTCSEKKKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMAT 82
N+ H+ E +I+ L+ P++ S+ Q + + + G + + ++ S+A
Sbjct: 2 NSVHRYKKEASNLIK-------LATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAA 54
Query: 83 SFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTE 142
S + F VGL AL + Q GA + H + + +G+ + LL+SVP+ + T+
Sbjct: 55 SI-WLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQ 113
Query: 143 SLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLH 202
++ + ++ + Y +I ++ AY + Q L F ++ P ++ I LL+
Sbjct: 114 FIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLN 173
Query: 203 ILVCWILVF-KSG---LGSRGAALANSISYWINVLLLAIYVKFSSSCA--KTWTGFSKEA 256
I + WI V+ K G LG G +A +I YWI +LLL Y+ S A K + F K
Sbjct: 174 IPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQ 233
Query: 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPF 316
+ RL P A + E+ F ++ LL P + + ++LN +S V+M P
Sbjct: 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVA--PLGSTVVAAHQVALNFSSLVFMFPM 291
Query: 317 GLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIE 376
+ A S RV ++LG + A +A V L+ + + + +L R Y+
Sbjct: 292 SIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQV 351
Query: 377 VVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAF-VNLGSYYLVGIPSAILL 433
VV +L A +D +Q V +G RG M F SY+++G+P+ +L
Sbjct: 352 VVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYK-DMTAIFHRTFISYWVLGLPTGYIL 408
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 88/418 (21%), Positives = 176/418 (42%), Gaps = 22/418 (5%)
Query: 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATS-FATVTGFSFLV 94
++E++ L+ P++ + Q + + + G G+ L+ ++ +S FATV + +
Sbjct: 10 LKEIRLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATV--YITFM 67
Query: 95 GLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISV-PLALIWANTES----LLVAAH 149
G+ +AL + Q YGA + G ++G++ L++ + + L+WA L ++ +
Sbjct: 68 GIMAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLSDY 127
Query: 150 QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWIL 209
+ +++ L+ +P+ + L L ++ +L S +L++ + +I
Sbjct: 128 VEGTMAQYM-LFTSLAMPAAMVHRALHAYASSLNRPRLI---MLVSFAAFVLNVPLNYIF 183
Query: 210 VFKS----GLGSRGAALANSISYWINVLLLAIYV---KFSSSCAKTWTGFSKEALNNVFN 262
V+ LG G +A +W + L L IY+ KF T F K
Sbjct: 184 VYGKFGMPALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLT-AKFGKPDWAVFKQ 242
Query: 263 FVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAA 322
++ P + LE +F +V L + + ISL+ ++MIP + A
Sbjct: 243 IWKIGAPIGLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGISLS--GILYMIPQSVGSAG 300
Query: 323 STRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVA 382
+ R+ LG AR V LV ++ L+L R+ Y+++ V+ +
Sbjct: 301 TVRIGFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIAS 360
Query: 383 SMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFG 440
++L D QC+ S RG + F++ +++ G+ LLA+ G
Sbjct: 361 TVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMG 418
>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium
Tuberculosis
Length = 232
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 259 NVFNFVRLAIPSAVMVCLEMWSFEMMVL-LSGL-LP-NPALETSVLSISLNTASTVW--- 312
+V N+VR S + VC ++ V SG+ LP PA + + + + ++ A+T+
Sbjct: 103 DVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFA 162
Query: 313 ------------MIPFGLSGAASTRVSNELG 331
++P G+S AA T +S ELG
Sbjct: 163 LNCDCDLAAFTAIVPCGISDAAVTSLSAELG 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,748,847
Number of Sequences: 62578
Number of extensions: 428242
Number of successful extensions: 1300
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 3
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)