Query 012981
Match_columns 452
No_of_seqs 260 out of 1846
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 08:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1E-55 2.2E-60 426.1 47.2 413 35-450 12-429 (455)
2 PRK00187 multidrug efflux prot 100.0 2.1E-50 4.5E-55 393.0 48.6 410 36-448 6-428 (464)
3 PRK10189 MATE family multidrug 100.0 8.8E-50 1.9E-54 388.5 50.1 408 37-447 26-445 (478)
4 PRK09575 vmrA multidrug efflux 100.0 1.9E-49 4.1E-54 385.8 46.8 409 37-449 9-421 (453)
5 PRK01766 multidrug efflux prot 100.0 2E-48 4.3E-53 380.5 47.9 414 33-449 5-427 (456)
6 PRK10367 DNA-damage-inducible 100.0 9.8E-48 2.1E-52 370.8 48.5 405 36-448 5-415 (441)
7 TIGR00797 matE putative efflux 100.0 1.2E-37 2.6E-42 293.9 43.1 338 48-388 1-341 (342)
8 TIGR01695 mviN integral membra 100.0 1.1E-36 2.3E-41 302.4 44.9 398 42-449 2-413 (502)
9 TIGR02900 spore_V_B stage V sp 100.0 2.2E-36 4.8E-41 299.2 39.7 398 43-449 2-419 (488)
10 PRK15099 O-antigen translocase 100.0 2.4E-34 5.1E-39 278.0 39.0 392 42-450 3-398 (416)
11 KOG1347 Uncharacterized membra 100.0 2.5E-33 5.3E-38 268.1 32.8 412 34-447 22-435 (473)
12 PF03023 MVIN: MviN-like prote 100.0 6.2E-31 1.3E-35 254.3 42.1 372 70-450 5-389 (451)
13 COG0728 MviN Uncharacterized m 100.0 3.2E-29 6.9E-34 237.7 42.9 403 40-448 7-421 (518)
14 PRK10459 colanic acid exporter 100.0 1.8E-27 3.8E-32 235.4 38.6 383 40-449 5-390 (492)
15 COG2244 RfbX Membrane protein 100.0 3.1E-25 6.6E-30 219.0 36.7 388 39-446 5-394 (480)
16 PRK00187 multidrug efflux prot 99.9 4.7E-22 1E-26 194.1 26.2 206 35-241 231-443 (464)
17 COG0534 NorM Na+-driven multid 99.9 2E-21 4.4E-26 188.0 26.3 212 33-246 234-447 (455)
18 PRK01766 multidrug efflux prot 99.9 3.5E-21 7.5E-26 188.6 25.5 207 35-242 234-442 (456)
19 PRK10189 MATE family multidrug 99.9 8.5E-21 1.9E-25 185.3 27.6 211 35-246 254-466 (478)
20 PRK09575 vmrA multidrug efflux 99.9 2.2E-20 4.7E-25 182.1 25.5 204 35-241 229-435 (453)
21 TIGR01695 mviN integral membra 99.8 1.8E-18 3.9E-23 172.0 29.4 204 36-241 219-427 (502)
22 PRK10367 DNA-damage-inducible 99.8 6.6E-19 1.4E-23 170.5 20.5 191 257-449 5-197 (441)
23 PF01943 Polysacc_synt: Polysa 99.8 1.9E-16 4.2E-21 144.3 31.9 270 43-329 2-272 (273)
24 PF01554 MatE: MatE; InterPro 99.8 3.2E-19 6.9E-24 149.1 7.8 162 269-432 1-162 (162)
25 TIGR02900 spore_V_B stage V sp 99.8 4.9E-17 1.1E-21 161.1 24.6 202 35-241 220-433 (488)
26 PF03023 MVIN: MviN-like prote 99.8 8.5E-16 1.8E-20 149.0 31.3 205 36-242 194-403 (451)
27 PF01554 MatE: MatE; InterPro 99.7 1.1E-18 2.4E-23 145.9 5.8 160 48-208 1-162 (162)
28 PRK10459 colanic acid exporter 99.7 1.7E-14 3.6E-19 143.0 34.1 199 36-240 203-403 (492)
29 PRK15099 O-antigen translocase 99.7 2E-15 4.4E-20 146.1 25.1 199 35-240 210-410 (416)
30 COG0728 MviN Uncharacterized m 99.7 5E-14 1.1E-18 134.7 33.6 231 37-276 229-464 (518)
31 TIGR00797 matE putative efflux 99.7 1.3E-15 2.8E-20 143.8 17.5 175 269-446 1-179 (342)
32 COG2244 RfbX Membrane protein 99.7 5.7E-14 1.2E-18 138.8 26.2 187 35-227 208-396 (480)
33 PF13440 Polysacc_synt_3: Poly 99.6 8.8E-13 1.9E-17 118.6 30.9 246 59-328 3-250 (251)
34 PF04506 Rft-1: Rft protein; 99.2 2.6E-08 5.7E-13 97.7 27.5 398 44-443 5-449 (549)
35 KOG1347 Uncharacterized membra 99.1 8E-09 1.7E-13 99.9 17.9 185 257-445 24-211 (473)
36 KOG2864 Nuclear division RFT1 99.1 1.3E-06 2.8E-11 80.5 30.7 396 38-442 6-427 (530)
37 PF07260 ANKH: Progressive ank 99.1 1.2E-06 2.6E-11 77.2 29.1 316 37-361 8-343 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 1.5E-05 3.3E-10 64.9 17.1 79 162-242 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.4 9.3E-05 2E-09 73.1 21.6 202 39-241 252-469 (549)
40 KOG2864 Nuclear division RFT1 98.1 0.00034 7.5E-09 65.0 16.9 200 40-241 239-448 (530)
41 PF07260 ANKH: Progressive ank 97.6 0.011 2.4E-07 52.8 18.1 160 256-421 6-168 (345)
42 PF01943 Polysacc_synt: Polysa 97.4 0.031 6.7E-07 50.4 19.2 159 265-436 3-162 (273)
43 PF14667 Polysacc_synt_C: Poly 97.3 9.3E-05 2E-09 60.2 1.9 65 385-450 2-66 (146)
44 COG4267 Predicted membrane pro 97.1 0.22 4.7E-06 45.8 33.4 318 90-434 74-413 (467)
45 PF13440 Polysacc_synt_3: Poly 96.9 0.17 3.8E-06 44.9 19.0 124 284-422 7-131 (251)
46 PF04505 Dispanin: Interferon- 64.3 46 0.001 23.7 6.7 42 318-360 36-77 (82)
47 COG4267 Predicted membrane pro 64.1 1.3E+02 0.0029 28.4 13.2 115 115-236 321-436 (467)
48 KOG2468 Dolichol kinase [Lipid 59.3 94 0.002 30.0 9.4 74 267-349 379-452 (510)
49 PF10160 Tmemb_40: Predicted m 55.7 1.5E+02 0.0033 26.3 10.1 85 334-421 110-194 (261)
50 COG2211 MelB Na+/melibiose sym 54.9 2.2E+02 0.0048 28.1 23.1 50 39-88 11-63 (467)
51 PF14184 YrvL: Regulatory prot 40.7 1.8E+02 0.0039 22.9 13.3 110 121-232 5-115 (132)
52 PTZ00343 triose or hexose phos 37.2 1.6E+02 0.0035 27.7 7.8 36 48-83 53-89 (350)
53 PRK10739 putative antibiotic t 31.6 3.3E+02 0.0071 23.2 9.2 57 323-383 21-77 (197)
54 PF05975 EcsB: Bacterial ABC t 28.8 5.3E+02 0.011 24.7 16.4 40 112-151 89-130 (386)
55 COG4536 CorB Putative Mg2+ and 25.9 5.6E+02 0.012 24.4 8.7 96 45-151 59-156 (423)
56 PF03904 DUF334: Domain of unk 24.8 4.6E+02 0.01 22.8 7.4 38 112-149 142-179 (230)
57 PRK03612 spermidine synthase; 24.6 7.3E+02 0.016 25.0 22.6 37 201-239 161-197 (521)
58 PF06808 DctM: DctM-like trans 24.1 6.7E+02 0.014 24.3 14.2 79 256-357 205-283 (416)
59 PF01102 Glycophorin_A: Glycop 21.2 1.2E+02 0.0025 23.6 3.1 22 219-240 68-89 (122)
60 PRK10995 inner membrane protei 20.1 5.8E+02 0.013 22.1 9.1 54 323-380 25-78 (221)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1e-55 Score=426.07 Aligned_cols=413 Identities=28% Similarity=0.379 Sum_probs=391.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc
Q 012981 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (452)
Q Consensus 35 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 114 (452)
.++..|+++++++|++++++...+++.+|+.++||+|++++|+.++++++..+. ..+..|++.|..+.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 456789999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 012981 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (452)
++++..++++.+.++++++..++ +++.++++.+++.++|+.+.+.+|+++..++.|+..+...+.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999777777 88999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC-CccchhhHHHHHHHHHHHHHHHHHHHhccc-cccccCCccHHHHHhHHHHHHHHhhh
Q 012981 194 SSGITALLHILVCWILVFK-SG-LGSRGAALANSISYWINVLLLAIYVKFSSS-CAKTWTGFSKEALNNVFNFVRLAIPS 270 (452)
Q Consensus 194 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ 270 (452)
.++++.++|+++|++++++ ++ +|+.|+++||++++.+.+++.+++++++++ ......+..+.+++.+|++++.|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 46 999999999999999999999999987764 22222333344789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 012981 271 AVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAV 350 (452)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 350 (452)
++++......+...+.+++++| ++++|+|+++.++.++.++++.+++++..|.+++++|+||++++++..+.+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHHHH
Q 012981 351 TEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSA 430 (452)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 430 (452)
.+++..+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+.+|+.||+|.+++.++.+.|++.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hCCceeEEEeEeee
Q 012981 431 ILLAFL-LHFGGRVKGFSFFS 450 (452)
Q Consensus 431 ~~l~~~-~g~~g~~~a~~~~~ 450 (452)
|++.+. +|..|+|+++....
T Consensus 409 ~~l~~~~~g~~Gvw~~~~~~~ 429 (455)
T COG0534 409 YLLGFFFLGLAGVWIGFPLSL 429 (455)
T ss_pred HHHhhhcccchHHHHHHHHHH
Confidence 999999 99999999876543
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.1e-50 Score=393.01 Aligned_cols=410 Identities=25% Similarity=0.324 Sum_probs=374.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccch
Q 012981 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (452)
Q Consensus 36 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~ 115 (452)
++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++..+. ..+..|++++..+.++|++|++|+|+
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 46789999999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHH
Q 012981 116 LGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSS 195 (452)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 195 (452)
+++..+.++.+...++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+....++++|+.||++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999888877775577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----CCccchhhHHHHHHHHHHHHHHHHHHHhcccc-cccc-CCccHHHHHhHHHHHHHHhh
Q 012981 196 GITALLHILVCWILVFKS----GLGSRGAALANSISYWINVLLLAIYVKFSSSC-AKTW-TGFSKEALNNVFNFVRLAIP 269 (452)
Q Consensus 196 ~~~~~~~i~~~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~p 269 (452)
+++.++|++++++++++. ++|+.|+++|+.+++.+..+...++++++++. +.+. ++..+.+++..|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999763 58999999999999988887766666544322 1221 22223367889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 012981 270 SAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMA 349 (452)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 349 (452)
.++++..+.....+++.++++++ ++++|++++++++..+...+..+++++..+.+++++|+||.+++++..+.++.++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHhhhccC--cH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 012981 350 VTEGILVGSVLILIRNVWGYAYSN--EI---EVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYL 424 (452)
Q Consensus 350 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 424 (452)
..++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||+|.+++.++.+.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999974 44 6788899999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHH--hCCceeEEEeEe
Q 012981 425 VGIPSAILLAFL--LHFGGRVKGFSF 448 (452)
Q Consensus 425 ~~i~l~~~l~~~--~g~~g~~~a~~~ 448 (452)
+++|++|++.+. +|..|+|++..+
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i 428 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLAL 428 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHH
Confidence 999999999987 466777766554
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.8e-50 Score=388.54 Aligned_cols=408 Identities=16% Similarity=0.170 Sum_probs=374.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchH
Q 012981 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHML 116 (452)
Q Consensus 37 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~ 116 (452)
+..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..|++++.++.++|++|++|+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 4589999999999999999999999999999999999999999999999988 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 012981 117 GIHMQRGMFVLLLISVPLALI-WANTESLLVAAH--QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (452)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (452)
++..++++.+...++++.+++ +++.++++.++. .|+|+.+.+..|+++..++.|+..+...+.+++|+.||++.++.
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999888877 678889999884 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc----CCccchhhHHHHHHHHHHHHHHHHHHHhccc--cccccCC-ccHHHHHhHHHHHHH
Q 012981 194 SSGITALLHILVCWILVFKS----GLGSRGAALANSISYWINVLLLAIYVKFSSS--CAKTWTG-FSKEALNNVFNFVRL 266 (452)
Q Consensus 194 ~~~~~~~~~i~~~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 266 (452)
.+++..++|++++++++++. ++|+.|+++|+.+++.+..++..+++.++++ .+.++++ ++..+++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 99999999999999999753 7899999999999999998887666544322 2222222 222367889999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012981 267 AIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVL 346 (452)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 346 (452)
|+|.+++.........+.+.+++.++ ++++|+|+++.++.++..++..+++++..|.+++++|++|.+++|+..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999998888888889888 7799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHh
Q 012981 347 VMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVG 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 426 (452)
+++..+++.++++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+.+++.||++.+++.++.+.|++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--hCCceeEEEeE
Q 012981 427 IPSAILLAFL--LHFGGRVKGFS 447 (452)
Q Consensus 427 i~l~~~l~~~--~g~~g~~~a~~ 447 (452)
+|+.|++... +|..|+|++..
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~ 445 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMF 445 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999876 56677777654
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.9e-49 Score=385.77 Aligned_cols=409 Identities=17% Similarity=0.164 Sum_probs=377.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccch
Q 012981 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (452)
Q Consensus 37 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~ 115 (452)
+..|++++.++|.+++++...+++.+|+.++++ +|+++++++++++++..+. ..+..+++.+..+.++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 467999999999999999999999999999999 5999999999999999988 88889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHH
Q 012981 116 LGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (452)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (452)
+++..++++.+...++++..++ ..+.++++.+++.|++..+.+.+|+++..++.++..+.....+.+|+.||++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999888877 778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccc-cccccCCccHHHHHhHHHHHHHHhhhHHH
Q 012981 195 SGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSS-CAKTWTGFSKEALNNVFNFVRLAIPSAVM 273 (452)
Q Consensus 195 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (452)
++.+.++|+++++++++.+++|+.|+++|+.+++.+..++..+++++++. .+.+.+.+ +.+++..|++++.|.|.+++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHHH
Confidence 99999999999999998889999999999999999999987777654433 22222222 23678899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 012981 274 VCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEG 353 (452)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 353 (452)
.....+...+.+.+++++++ ++++|+|+++.++..+..++..+++++..|.+++++|+||+|++++..+.++++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999998899988873 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHhhhccC-cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHHHHHH
Q 012981 354 ILVGSVLILIRNVWGYAYSN-EIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAIL 432 (452)
Q Consensus 354 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~ 432 (452)
++.+++++.+++++.++|++ |+|+.+.+..++++.+++.++++++.+..+.+++.||++.++..++.. +++++|+.|+
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 789999999999999999999999999999999999999999999876 5889999999
Q ss_pred HHHHhCCceeEEEeEee
Q 012981 433 LAFLLHFGGRVKGFSFF 449 (452)
Q Consensus 433 l~~~~g~~g~~~a~~~~ 449 (452)
+.+.+|..|+|++...+
T Consensus 405 l~~~~G~~Gvw~a~~~~ 421 (453)
T PRK09575 405 LPKWLGVDGVWLAMPLS 421 (453)
T ss_pred HHHHHCcchHhhHHHHH
Confidence 99889999999987653
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2e-48 Score=380.54 Aligned_cols=414 Identities=24% Similarity=0.383 Sum_probs=378.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCc
Q 012981 33 KKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQ 112 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 112 (452)
+..++.+|++++.++|..++++...+.+.+|+.+++++|++++++++++.++.... ..+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 44567899999999999999999999999999999999999999999999988777 78889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHH
Q 012981 113 YHMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (452)
+|+.++..+.++.+.+..+++++++ +.+.+++..+++.|+++.+.+..|+++..++.++..+...+++++++.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999888777 667888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----cCCccchhhHHHHHHHHHHHHHHHHHHHhccccc-c-ccCCccHHHHHhHHHHHH
Q 012981 192 VLSSGITALLHILVCWILVFK----SGLGSRGAALANSISYWINVLLLAIYVKFSSSCA-K-TWTGFSKEALNNVFNFVR 265 (452)
Q Consensus 192 ~~~~~~~~~~~i~~~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 265 (452)
+..+.++.++|++++++++++ +++|+.|+++++.+++.+..++..++.+++++.+ . .++++.+.+++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999864 3689999999999999999998887776544321 1 112222336778999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHH
Q 012981 266 LAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVV 345 (452)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 345 (452)
.++|.+++...+...+.+++.++++++ ++++++++++.++.++..+++.+++.+..+.+++++|+||.+++++..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999987 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 012981 346 LVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLV 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 425 (452)
++++..++++.++++..+++++.++|++|+|+.+.+..++++..+..++++++....+.+++.||+|.+++.++.+.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred hHHHHHHHHHH--hCCceeEEEeEee
Q 012981 426 GIPSAILLAFL--LHFGGRVKGFSFF 449 (452)
Q Consensus 426 ~i~l~~~l~~~--~g~~g~~~a~~~~ 449 (452)
++|+.|++... +|..|+|++...+
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~~~ 427 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLIIG 427 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHHHH
Confidence 99999998876 5677888776543
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=9.8e-48 Score=370.77 Aligned_cols=405 Identities=16% Similarity=0.098 Sum_probs=356.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc
Q 012981 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHL-GELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (452)
Q Consensus 36 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 114 (452)
++..|+++++++|.+++++...+.+.+|+.+++++ |++++++++++.++..+. ..+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 34578999999999999999999999999999997 678999999999999998 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 012981 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (452)
++++..++++.+.+..+++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+...+.+++|+.||+|.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999888777 66888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccccc-cccCCccHHHHHhHHHHHHHHhhhHH
Q 012981 194 SSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCA-KTWTGFSKEALNNVFNFVRLAIPSAV 272 (452)
Q Consensus 194 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~ 272 (452)
.++++.++|+++++++++++++|+.|+++|+.+++.+.+++..++++++++.+ .+.+.++...++..|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988999999999999999999888777765432211 11111221113578999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 012981 273 MVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTE 352 (452)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (452)
++......+.+.+.++++++ ++++|+|+++.++.++.+++..+++++..|.+++++|+||.+++|+..+++.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCc---chhhHHHHHHHHHHHhHHH
Q 012981 353 GILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGW---QMIGAFVNLGSYYLVGIPS 429 (452)
Q Consensus 353 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~l 429 (452)
+..++++++.+++++.++|++|+|+.+.+..++++.++..+......+..+++++.+| +|.++..++.+.|+..+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-- 399 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999988764433344444555555555 99999999998764322
Q ss_pred HHHHHHHhCCceeEEEeEe
Q 012981 430 AILLAFLLHFGGRVKGFSF 448 (452)
Q Consensus 430 ~~~l~~~~g~~g~~~a~~~ 448 (452)
..+.+|..|+|++...
T Consensus 400 ---~~~~~g~~Gvw~a~~~ 415 (441)
T PRK10367 400 ---TLPWLGNHGLWLALTV 415 (441)
T ss_pred ---HHHHcCchHHHHHHHH
Confidence 3345788999887654
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.2e-37 Score=293.93 Aligned_cols=338 Identities=33% Similarity=0.518 Sum_probs=308.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchHHHHHHHHHHHH
Q 012981 48 PLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVL 127 (452)
Q Consensus 48 p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.+++++|++|+|+.++..+....+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998887 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q 012981 128 LLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVC 206 (452)
Q Consensus 128 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 206 (452)
...+++.+++ +.+.+++..+++.|++..+++..++++..++.++........+.+++.||++.....++.+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999988887 678889988888788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CccchhhHHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012981 207 WILVF-KSG-LGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMM 284 (452)
Q Consensus 207 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 284 (452)
++++. .++ +|+.|+++++.+++.+..++..++.+++++.+.++++..+.+++..|++++++.|.++++...++.+.++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98886 456 7899999999999999999887777654433333222222356889999999999999999999999999
Q ss_pred HHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012981 285 VLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIR 364 (452)
Q Consensus 285 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (452)
+.+++.++ ++++++|+++.++.++...++.+++++..|.++++++++|.++.++..++++++.+.++++...++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876 7799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCcHHHHHHHHHHHHHH
Q 012981 365 NVWGYAYSNEIEVVKYVASMLPIL 388 (452)
Q Consensus 365 ~~i~~l~~~~~~~~~~~~~~l~i~ 388 (452)
+++.++|++|+|+.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999988888764
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.1e-36 Score=302.39 Aligned_cols=398 Identities=14% Similarity=0.047 Sum_probs=336.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhCCCccchHHH
Q 012981 42 QLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPL-SGASMATSFATVTGFSFL-VGLSSALETLCGQSYGAKQYHMLGI 118 (452)
Q Consensus 42 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-a~~~~~~~i~~~~~~~~~-~gl~~~~~~~~~~~~~~~~~~~~~~ 118 (452)
+.|.+.-..++++.+.+.+++|..+++| +|++++ ++++.+.++......... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788899999999999999999999999 999999 899999999877623333 468888877776654322 57777
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHH
Q 012981 119 HMQRGMFVLLLISV-PLALI-WANTESLLVAA--HQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (452)
Q Consensus 119 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (452)
....+.......+. +..++ +++.+++..++ +.+++..+.+.+|++++.++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776665554444 34444 66778887777 4567777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhh--HHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhHH
Q 012981 195 SGITALLHILVCWILVFKSGLGSRGAA--LANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAV 272 (452)
Q Consensus 195 ~~~~~~~~i~~~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 272 (452)
+++..+++++...++. .++|..|++ +++.+++.+..++.+.+.++++. +.+ .+++. +++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLK-PRFNF-RDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccc-CcCCC-CChhHHHHHHHHHHHHH
Confidence 9998887776544443 588999988 99999999998888777655432 111 11211 45778999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHH-HHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 012981 273 MVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWM-IPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVT 351 (452)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 351 (452)
++....+...+++.+.+.++ ++++++|+.+.++.++... +..+++++..|.+++++|++|.++.++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998877665 6689999999999988764 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHhhhccC----cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhH
Q 012981 352 EGILVGSVLILIRNVWGYAYSN----EIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGI 427 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 427 (452)
+++|.++++..+++++.+++.+ |+|..+.+..++++++++.++.+++.+..+.+++.||+|.+++.++.+. ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999876 5677889999999999999999999999999999999999999999985 8899
Q ss_pred HHHHHHHHHhCCceeEEEeEee
Q 012981 428 PSAILLAFLLHFGGRVKGFSFF 449 (452)
Q Consensus 428 ~l~~~l~~~~g~~g~~~a~~~~ 449 (452)
|+++++.+.+|..|+|++...+
T Consensus 392 ~l~~~l~~~~G~~G~~~a~~i~ 413 (502)
T TIGR01695 392 LLSLLLIFPLGLVGIALATSAA 413 (502)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999887654
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.2e-36 Score=299.17 Aligned_cols=398 Identities=15% Similarity=0.136 Sum_probs=335.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchHHHHHH
Q 012981 43 LWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQ 121 (452)
Q Consensus 43 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (452)
.|.+.|..++++...+.+++|+.+++| +|++++|+++.+.++..+.......|++++..+.++|+.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999999887344456999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 012981 122 RGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITAL 200 (452)
Q Consensus 122 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 200 (452)
.++.+.+..+++.+++ ..+.+.+...+..+++. ..++++..+..++..+....++.+|+.+|.+.....+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888777 55777776666666543 246788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----cCCccchhhHHHHHHHHHHHHHHHHHHHhccccc--cccCCccHHHHHhHHHHHHHHhhhHHH
Q 012981 201 LHILVCWILVFK-----SGLGSRGAALANSISYWINVLLLAIYVKFSSSCA--KTWTGFSKEALNNVFNFVRLAIPSAVM 273 (452)
Q Consensus 201 ~~i~~~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (452)
+++.++..++.. .+.|+.|+++++.+++.+..++.+++.+++++.+ .++.+.++.+++..|++++++.|.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776555432 2467888889999999999888776665443322 111222233567899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCC--c---h---hhhHHH-HHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 012981 274 VCLEMWSFEMMVLLSGLLPN--P---A---LETSVL-SISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCV 344 (452)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~--~---~---~~~a~~-~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 344 (452)
++...+....|+.++++... + . ...+.| +++.++..+...+..+++++..|.++++.|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988865321 0 1 223333 4566778888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 012981 345 VLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYL 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 424 (452)
++++...++.|.++++..+++++.+++.++++ +..+++++++..++.+++.+..+.+++.||+|..++.++.+. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999886543 577899999999999999999999999999999999999986 8
Q ss_pred HhHHHHHHHH--HHhCCceeEEEeEee
Q 012981 425 VGIPSAILLA--FLLHFGGRVKGFSFF 449 (452)
Q Consensus 425 ~~i~l~~~l~--~~~g~~g~~~a~~~~ 449 (452)
+++++++++. +.+|..|++++..++
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~ 419 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIIT 419 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHH
Confidence 9999999988 889999999886544
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=2.4e-34 Score=277.99 Aligned_cols=392 Identities=13% Similarity=0.028 Sum_probs=332.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchHHHHH
Q 012981 42 QLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHM 120 (452)
Q Consensus 42 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 120 (452)
+.|.+.+...+++...+.+++...+++| +|++++|.++...++..+.......|++++..+.++|+ ++|+|+.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5788889999999999999999999999 99999999999999998874555888888888899987 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 012981 121 QRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITA 199 (452)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 199 (452)
++++.+....+++.+++ +.+.+++...+..+++ +. .++.+..+..+...+.....+.+|+.||++.++...+.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-YQ---GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877 6788888887776665 32 4455666666667788899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhHHHHHHHHH
Q 012981 200 LLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMW 279 (452)
Q Consensus 200 ~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 279 (452)
++|+.+ +++.+. ..|+.|+++|+++++.+..+...++.++++..+.+..+.+. +++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSW-DNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 444432 34999999999999999888777666554432222122222 578899999999999999999999
Q ss_pred HHHHHHHHhh-cCCCchhhhHHHHHHHHHhHH-HHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 012981 280 SFEMMVLLSG-LLPNPALETSVLSISLNTAST-VWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVG 357 (452)
Q Consensus 280 ~~~~~~~~~~-~~~~~~~~~a~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (452)
....++.+++ .++ ++++|.|+++.|+.+. ...+..+++++..|.++++ +|.++.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 665 7799999999999775 5889999999999999985 6788999999999999999999999
Q ss_pred HHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHHHHHHHHHHh
Q 012981 358 SVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLL 437 (452)
Q Consensus 358 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 437 (452)
+++++++|++++++.+|+ ++.+.+++++++++.++...+......+.+.++++.....++.. .++.+|+++++++.+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~~ 385 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPLH 385 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999999876 66688999999999999988888888888888998888888776 589999999999999
Q ss_pred CCceeEEEeEeee
Q 012981 438 HFGGRVKGFSFFS 450 (452)
Q Consensus 438 g~~g~~~a~~~~~ 450 (452)
|..|++++..++.
T Consensus 386 G~~G~a~a~~is~ 398 (416)
T PRK15099 386 GALGAAQAYMATY 398 (416)
T ss_pred hhHHHHHHHHHHH
Confidence 9999988876543
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=268.12 Aligned_cols=412 Identities=46% Similarity=0.762 Sum_probs=388.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCcc
Q 012981 34 KIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY 113 (452)
Q Consensus 34 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 113 (452)
..+++.|++++++.|..+..+.......++..++||+|+.++++.+++.+..+..+..+..|+..+..+.++|++|++++
T Consensus 22 ~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 22 QLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 33678899999999999999999999999999999999999999999999999877889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 012981 114 HMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (452)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (452)
+......+++........++...++.+.++++..++.|+++...+..|.++..+..+..........++|++++.....+
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~ 181 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLV 181 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhHHH
Q 012981 194 SSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVM 273 (452)
Q Consensus 194 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (452)
.......+++++++++++..++|..|++++..+++.........+..... ....|..+..+ ++.+++.++.+.|..++
T Consensus 182 ~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~m 259 (473)
T KOG1347|consen 182 IGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVM 259 (473)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchhe
Confidence 99999999999999999999999999999999999999999888886544 45566666665 88999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 012981 274 VCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEG 353 (452)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 353 (452)
...+++.+....++.|.+++...++++.++..+.....++++.+++.+...++++.+|++|.+.+|...+.....++..+
T Consensus 260 iclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g 339 (473)
T KOG1347|consen 260 ICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIG 339 (473)
T ss_pred eHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999997778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHHHHHHH
Q 012981 354 ILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILL 433 (452)
Q Consensus 354 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l 433 (452)
...+..++..++.+..+|++|+|+.+...+..++++...++++.+.+..+..++.|+.+...++++.+.+++++|...++
T Consensus 340 ~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l 419 (473)
T KOG1347|consen 340 ASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYL 419 (473)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH--hCCceeEEEeE
Q 012981 434 AFL--LHFGGRVKGFS 447 (452)
Q Consensus 434 ~~~--~g~~g~~~a~~ 447 (452)
... +|..|.|.+..
T Consensus 420 ~~~~~~g~~glw~G~~ 435 (473)
T KOG1347|consen 420 GFFTKFGVKGLWIGIL 435 (473)
T ss_pred EEEEecCceEEEeehH
Confidence 854 55666666643
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=6.2e-31 Score=254.26 Aligned_cols=372 Identities=18% Similarity=0.110 Sum_probs=324.7
Q ss_pred cC-hhhHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 012981 70 LG-ELPLSGASMATSFATVTGFSFL-VGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALI-WANTESLLV 146 (452)
Q Consensus 70 lg-~~~~a~~~~~~~i~~~~~~~~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 146 (452)
+| .++..+|..+.++..++...+. .+++++..|...+.. ++|+|+.++..+....+.....++++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 5677899999999999844444 468999999999998 8888999999999888888888887777 778899988
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCc---cchhh
Q 012981 147 AA--HQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLG---SRGAA 221 (452)
Q Consensus 147 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~~ 221 (452)
.+ +.+++..+.+.+++++..+..++..+..++.+++|+++|...+....+..++..++...++. ...| +++.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence 77 55788899999999999999999999999999999999999999988888877665444433 3566 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHH
Q 012981 222 LANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVL 301 (452)
Q Consensus 222 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 301 (452)
++..++.++..++.....+|.+.+.+...+. +.+..|++++...|..+.....++...+++.+.+.+++ .+++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~--G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDW---RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE--GSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cHHHHH
Confidence 9999999999999888877554331111111 23568999999999999999999999999999999884 489999
Q ss_pred HHHHHHhHHHH-HHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcc----CcHH
Q 012981 302 SISLNTASTVW-MIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYS----NEIE 376 (452)
Q Consensus 302 ~~~~~i~~~~~-~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~ 376 (452)
+.++++.+++. .+..+++++..|.+++...++|.++.++..++.++....+.+|+++++..++++++++.. -|+|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999965 678899999999999999999999999999999999999999999999999999999875 2677
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHHHHHHHHHHhCCceeEEEeEeee
Q 012981 377 VVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGFSFFS 450 (452)
Q Consensus 377 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~g~~g~~~a~~~~~ 450 (452)
+.+.+...+++++++.++.+++.++...+++.||+|.+++.+..+. ++++.+++++.+.+|..|.+++.++++
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~~g~~Glala~sl~~ 389 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPFFGVAGLALATSLSA 389 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999985 999999999999999999888776554
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=3.2e-29 Score=237.75 Aligned_cols=403 Identities=15% Similarity=0.049 Sum_probs=340.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCh-hhHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhhCCCccchH
Q 012981 40 KRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGE-LPLSGASMATSFATVTGFSFLV-GLSSALETLCGQSYGAKQYHML 116 (452)
Q Consensus 40 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~-~~~a~~~~~~~i~~~~~~~~~~-gl~~~~~~~~~~~~~~~~~~~~ 116 (452)
+.++|.++-....++++.+.+++...++++ +|. ....++.++.++.+++--.+.. .++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 557777888888888999999999999999 996 6677999999999988444444 4689999999999888877888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 012981 117 GIHMQRGMFVLLLISVPLALI-WANTESLLVAA-HQ--DSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (452)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (452)
++..+........+.+..+++ .++.+.+.... .. |++....+....++..+..++.++.....+.+++.+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 887777776666667777776 66777777343 33 234344688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhHH
Q 012981 193 LSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAV 272 (452)
Q Consensus 193 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 272 (452)
+..+..++.-+.....+....+....+.+++..++-+.+.++.+..++|.+...+....++ .+..|++.+.-.|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHHHHH
Confidence 9998888776644444443222236788999999999999999999987664333222222 2679999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHH-HHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 012981 273 MVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVW-MIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVT 351 (452)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 351 (452)
.....+++..+++.+.+.+.+| +++.++.++++.+++. .+..+++++..|.++++..++|.++.++..+.+++.+..
T Consensus 244 ~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999744 8999999999999955 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHhhhccC----cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhH
Q 012981 352 EGILVGSVLILIRNVWGYAYSN----EIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGI 427 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 427 (452)
.++|.+.++.++++|++++.+. ++++.+.+.+.++.++++.++..+..++...+++.+|+|.|+++++.+. ++++
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHH
Confidence 9999999999999999998752 5677889999999999999999999999999999999999999999985 9999
Q ss_pred HHHHHHHHHhCCceeEEEeEe
Q 012981 428 PSAILLAFLLHFGGRVKGFSF 448 (452)
Q Consensus 428 ~l~~~l~~~~g~~g~~~a~~~ 448 (452)
.+++.+.+.+|..|.+++.+.
T Consensus 401 ~l~~~l~~~~~~~giala~s~ 421 (518)
T COG0728 401 LLNLLLIPPLGHVGLALATSL 421 (518)
T ss_pred HHHHHHHhhccchHHHHHHHH
Confidence 999999999999886655443
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=1.8e-27 Score=235.43 Aligned_cols=383 Identities=11% Similarity=0.070 Sum_probs=307.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchHHH
Q 012981 40 KRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGI 118 (452)
Q Consensus 40 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~ 118 (452)
++..+.+.+..+++......+++...+++| +|++++|.++.+..+..+.......|++++.. |. +|.+ ++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--HL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--HH
Confidence 667888999999999999999999999999 99999999999999999874566677777643 21 1211 23
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 012981 119 HMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGI 197 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 197 (452)
......++....+++..++ +.+.+++...+. +++. ...+++..+..++..+.......++..+|.+........
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3455556666666666655 445555544443 4432 346777778888888888999999999999999988888
Q ss_pred HHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhHHHHHHH
Q 012981 198 TALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLE 277 (452)
Q Consensus 198 ~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 277 (452)
..+...++...+.. .++|..+..++..++..+..+..+...+ +++ +.+ .+ .+++..|++++++.|...++...
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~-~~~-~~~---~~-~~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGR-KIY-RPA---LH-FSLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhc-ccC-Ccc---ce-ecHHHHHHHHhhhHHHHHHHHHH
Confidence 88877766655554 4789999999999998887765543332 221 111 11 13567899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHH-HHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 012981 278 MWSFEMMVLLSGLLPNPALETSVLSISLNTASTVW-MIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILV 356 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (452)
.+....|+.+++.+. |++++|.|+.+.++.+... .+...++++..|.+++. ++|.++.++..++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876 3889999999999998754 45666888999999885 5788999999999999999999999
Q ss_pred HHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHHHHHHHHHH
Q 012981 357 GSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFL 436 (452)
Q Consensus 357 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 436 (452)
.+++.+++++++.++.+++ ++.+...++++++..++..+.......+++.||+|..++.++... ++.+|..+.+.+.
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~~ 377 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQL 377 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHhh
Confidence 9999999999999988765 788899999999999999999999999999999999999999875 8889999999999
Q ss_pred hCCceeEEEeEee
Q 012981 437 LHFGGRVKGFSFF 449 (452)
Q Consensus 437 ~g~~g~~~a~~~~ 449 (452)
+|..|++++...+
T Consensus 378 ~G~~g~a~a~~i~ 390 (492)
T PRK10459 378 AGLIGVALGFLLV 390 (492)
T ss_pred ccHHHHHHHHHHH
Confidence 9999888776543
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.95 E-value=3.1e-25 Score=218.99 Aligned_cols=388 Identities=16% Similarity=0.131 Sum_probs=308.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchHH
Q 012981 39 VKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLG 117 (452)
Q Consensus 39 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~ 117 (452)
.+++.|.+.....+++.+.+.+++....++| +|++++|.++.+.++..+.......|++.+..+.++++.++++++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~ 84 (480)
T COG2244 5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLI 84 (480)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHH
Confidence 4778899999999999999999999999999 999999999999999999856666899999999999886655554444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 012981 118 IH-MQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSG 196 (452)
Q Consensus 118 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 196 (452)
.. ...........+.+.........+. + +.....+++..+..+.........+.+|+.++.+......+
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (480)
T COG2244 85 LLSVLLLLLLALILLLLLLLIAYLLAPI------D----PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIV 154 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc------C----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence 44 4444444433333333332222221 1 22334577888999999999999999999999999998844
Q ss_pred HHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhHHHHHH
Q 012981 197 ITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCL 276 (452)
Q Consensus 197 ~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 276 (452)
.+ ..-+.....+. ........++..++..........+..++++. ..+...+. .++..|++++++.|....+..
T Consensus 155 ~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 155 SS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRG-LKRPILRF-SLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccCc-hhHHHHHHHHHhhHHHHHHHH
Confidence 44 11111211222 23455556666666666555555554322111 11111111 468899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 012981 277 EMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILV 356 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (452)
..+....|+.+++++. +++++|.|+.++++......+..+++.+..|.+++...++|.++.++..+++.++...++.|.
T Consensus 229 ~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 388999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHHHHHHHHHH
Q 012981 357 GSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFL 436 (452)
Q Consensus 357 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 436 (452)
.+++..+++++..++.+++ +..+...+.++++..++.+........+++.||++..++.+..+. +.++.+++++++.
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li~~ 384 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLIPR 384 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHHHh
Confidence 9999999999999988866 455899999999999999999999999999999999999999986 9999999999999
Q ss_pred hCCceeEEEe
Q 012981 437 LHFGGRVKGF 446 (452)
Q Consensus 437 ~g~~g~~~a~ 446 (452)
+|..|++.+.
T Consensus 385 ~g~~g~~~a~ 394 (480)
T COG2244 385 FGLIGAAIAT 394 (480)
T ss_pred hhhhhHHHHH
Confidence 9998887665
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.91 E-value=4.7e-22 Score=194.08 Aligned_cols=206 Identities=18% Similarity=0.184 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc
Q 012981 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (452)
Q Consensus 35 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 114 (452)
.++.+|++++.++|.++++++......+|+.+++++|++++++++++.++..+. ..+..|++.+.++.++|++|+||+|
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~~ 309 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRLL 309 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 456789999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--CH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCh
Q 012981 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQ--DS---EISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIV 188 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (452)
++++..+.++.++...+++.+++ +.+.+++.+.+.. ++ |+.+.+..|+++.+++.++.++..++.+.+|+.||+
T Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~ 389 (464)
T PRK00187 310 EARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDA 389 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCcc
Confidence 99999999999999999888877 7788999988853 33 788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 012981 189 FPMVLSSGITA-LLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (452)
Q Consensus 189 ~~~~~~~~~~~-~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 241 (452)
+.++..++.+. ++++++++++.+.+++|+.|+|+++.+++.+..+.....+++
T Consensus 390 ~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 390 RTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 699999999998778999999999999999998877666643
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=2e-21 Score=187.95 Aligned_cols=212 Identities=21% Similarity=0.199 Sum_probs=198.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCc
Q 012981 33 KKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQ 112 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~ 112 (452)
+..++..|++++.++|..++++.......+.+.+++++|++.+|+++++.++.++. ..+..|++++.++.+++++|+||
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga~~ 312 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGAGN 312 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCC
Confidence 44568899999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHH
Q 012981 113 YHMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (452)
+|++++..+.+..++..+++...++ +.+++++..+|.+|+|+.+.+..++++..+..++.+...+..+.+||.||+|.+
T Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~ 392 (455)
T COG0534 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP 392 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 9999999999999999999998888 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccccc
Q 012981 192 VLSSGITAL-LHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCA 246 (452)
Q Consensus 192 ~~~~~~~~~-~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 246 (452)
+..++.+.+ +.+++.+++.+.. +|..|.|++..+++.+..++..+++++++|.+
T Consensus 393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (455)
T COG0534 393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRR 447 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999887 6788888887643 99999999999999999999999887655543
No 18
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=3.5e-21 Score=188.56 Aligned_cols=207 Identities=19% Similarity=0.166 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc
Q 012981 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (452)
Q Consensus 35 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 114 (452)
.++.+|++++.++|..++++.......++..+++++|++++++++++.++.++. ..+..|++.+.++.++|++|+||++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~~ 312 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRTL 312 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 356789999999999999999999999999999999999999999999999998 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 012981 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (452)
++++..+.++.++..++++.+++ +.+.+++..++..|+|+.+.+..++++..+..++.++.....+.+|+.||++.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 392 (456)
T PRK01766 313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFF 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHH
Confidence 99999999999999999888777 67999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhc
Q 012981 194 SSGITA-LLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFS 242 (452)
Q Consensus 194 ~~~~~~-~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 242 (452)
.++.+. ++++++.+++.+.+++|+.|+++++.+++.+..++..+++++.
T Consensus 393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 5899999988876789999999999999999999887777543
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=8.5e-21 Score=185.33 Aligned_cols=211 Identities=15% Similarity=0.067 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc
Q 012981 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (452)
Q Consensus 35 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 114 (452)
.++.+|++++.++|..++.........+.+.+++++|++++|+++++.++.++. ..+..|++++.++.++|++|++|.|
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356789999999999999999999999989999999999999999999999998 8999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 012981 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (452)
++++..+.+..+....+++++++ +.+++++..+|..|+|+.+.+..++++.++..++.+...+..+.+||.||++.++.
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 99999999999999999888887 67999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccccc
Q 012981 194 SSGITAL-LHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCA 246 (452)
Q Consensus 194 ~~~~~~~-~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 246 (452)
.++...+ +.+++.+++....++|..|.|++..+++.+..++..+++++++|.+
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 9998875 7778888877666899999999999999999999888887766655
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=2.2e-20 Score=182.15 Aligned_cols=204 Identities=17% Similarity=0.157 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCcc
Q 012981 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGE-LPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY 113 (452)
Q Consensus 35 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~-~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 113 (452)
.++..|++++.+.|..++.....+...+.+.+++++|+ +++|+++++.++..+. ..+..|++++.++.++|++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCCh
Confidence 45678999999999999999999999999999999885 6899999999999998 999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC-CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHH
Q 012981 114 HMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQ-DSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (452)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (452)
|++++..+.++.+++..+++..++ +.+.+++..+|+. |+|+.+.+.+|+++..++.++.++..+..+++|+.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999998887 6799999999985 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 012981 192 VLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (452)
Q Consensus 192 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 241 (452)
+..+....++++++.+++.. .+|+.|+|+++.+++.+..++....+++
T Consensus 388 ~~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 388 LFISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888887763 4799999999999999988887766654
No 21
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.84 E-value=1.8e-18 Score=171.97 Aligned_cols=204 Identities=19% Similarity=0.167 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccch
Q 012981 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (452)
Q Consensus 36 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~ 115 (452)
++..|++++.+.|..++++...+...+|+.+.+++|++++++|+.+.++.++....+..+++++..|.++++++++|+|+
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45689999999999999999999999999885559999999999999999887344678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhH
Q 012981 116 LGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQ----DSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFP 190 (452)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 190 (452)
.++..+.+......++.+.+++ ..+++++..++.+ |+|..+.+.+++++.+++.++..+.....+.+++.||+|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999998887 7789999988765 5677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 012981 191 MVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (452)
Q Consensus 191 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 241 (452)
+++.+....+++++++++++. .+|..|+++++.+++.+..++..++.+|
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 427 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNR 427 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874 6899999999999999999888777754
No 22
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.82 E-value=6.6e-19 Score=170.47 Aligned_cols=191 Identities=15% Similarity=0.101 Sum_probs=177.2
Q ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChH
Q 012981 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPE 336 (452)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~ 336 (452)
+++.|++++.+.|.+++++.......+|+.++++++ +++++|+.+++.++..+...+..+++.+..+.+++++|+||.|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 456889999999999999999999999999999986 2778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHH
Q 012981 337 AARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAF 416 (452)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 416 (452)
++++..+.++..+..++++..+....+.+++.+++..|+|+.+.+.+++++..++.++..+.....+.+++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHH--hCCceeEEEeEee
Q 012981 417 VNLGSYYLVGIPSAILLAFL--LHFGGRVKGFSFF 449 (452)
Q Consensus 417 ~~~~~~~~~~i~l~~~l~~~--~g~~g~~~a~~~~ 449 (452)
.++++. +++++++|++++. +|..|+++|..++
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is 197 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIA 197 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 999985 9999999999885 4677777776543
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.81 E-value=1.9e-16 Score=144.33 Aligned_cols=270 Identities=19% Similarity=0.185 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchHHHHHH
Q 012981 43 LWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQ 121 (452)
Q Consensus 43 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (452)
.|.+.....+++...+.+++...+++| +|++++|.++...++..+.......|++++..+..+++..+ +++.++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577888999999999999999999999 99999999999999999884556889999998888876432 344444544
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 012981 122 RGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALL 201 (452)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (452)
.........+++..+..... ..+..++ ... .+........++.........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333332221 1333332 211 122222222257788888999999999999999999999988
Q ss_pred HHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhHHHHHHHHHHH
Q 012981 202 HILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSF 281 (452)
Q Consensus 202 ~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 281 (452)
..++..+++. ...+..+...+..++..+..++.+...+|+.+ ++.+..+++..|++++++.|.++.++...+..
T Consensus 152 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877666665 24458899999999999998888877765432 11222236889999999999999999999999
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHh
Q 012981 282 EMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNE 329 (452)
Q Consensus 282 ~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~ 329 (452)
..|..+++.+. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987 489999999999999999999999999999999875
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.78 E-value=3.2e-19 Score=149.13 Aligned_cols=162 Identities=28% Similarity=0.424 Sum_probs=157.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 012981 269 PSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVM 348 (452)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 348 (452)
|.+++++.....+.+++.++++++ ++++++++++.++..+...+..+++++..+.+++++|++|+++.++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999996 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHH
Q 012981 349 AVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIP 428 (452)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (452)
...++++.+++...+++++.++|++|+|+.+.+.+++++..+..++.++.....+++++.||+|..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHH
Q 012981 429 SAIL 432 (452)
Q Consensus 429 l~~~ 432 (452)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9985
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.78 E-value=4.9e-17 Score=161.12 Aligned_cols=202 Identities=18% Similarity=0.145 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh---------hHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 012981 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGEL---------PLSGA-SMATSFATVTGFSFLVGLSSALETL 103 (452)
Q Consensus 35 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~---------~~a~~-~~~~~i~~~~~~~~~~gl~~~~~~~ 103 (452)
.++.+|++++++.|..++++...+...+|+.++++ ++++ .++.+ +.+.++..+. ..+..+++.+..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999988 5322 22222 3556677777 67789999999999
Q ss_pred HHHhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012981 104 CGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFL 182 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 182 (452)
++++.+++|+|+.++..++...+....+.+.+++ ..+++++..++..++ ++.+++++.++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877 678888888876543 35678999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 012981 183 QTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (452)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 241 (452)
++.||+|..++.++...++|++++++++..+.+|+.|+++++.+++.+..++..+..+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988875458999999999999999999988887754
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.77 E-value=8.5e-16 Score=149.03 Aligned_cols=205 Identities=22% Similarity=0.208 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccch
Q 012981 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (452)
Q Consensus 36 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~ 115 (452)
.+..|++++...|..++.....+...+|+.+.+++++.++++++.+.++.++....+..++++...|..++...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45679999999999999999999999999999999999999999999999998567888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhH
Q 012981 116 LGIHMQRGMFVLLLISVPLALI-WANTESLLVAAH----QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFP 190 (452)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 190 (452)
.++..++++.....+.++.++. ..+++++...+. .++|..+.....+++.+++.++.++...+...+.+.+|+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999888 779999998663 36677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhc
Q 012981 191 MVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFS 242 (452)
Q Consensus 191 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 242 (452)
++..++++.++|++++.++.. .+|..|.++++.++..+..++.+..++|+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988874 89999999999999999999998888654
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=1.1e-18 Score=145.85 Aligned_cols=160 Identities=28% Similarity=0.392 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchHHHHHHHHHHHH
Q 012981 48 PLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVL 127 (452)
Q Consensus 48 p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
|..++++...+...+|+.+++++|++++++++++.++..+. ..+..|+++|..+.++|++|++|+|++++..+.+..+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH-HHHHHH
Q 012981 128 LLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITA-LLHILV 205 (452)
Q Consensus 128 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 205 (452)
..++++..++ ..+.+++..+++.|+|..+++.+|+++..++.++..+.....+++++.||++.++..++.+. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 77899999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHH
Q 012981 206 CWI 208 (452)
Q Consensus 206 ~~~ 208 (452)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 28
>PRK10459 colanic acid exporter; Provisional
Probab=99.73 E-value=1.7e-14 Score=143.03 Aligned_cols=199 Identities=16% Similarity=0.100 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccc
Q 012981 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (452)
Q Consensus 36 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 114 (452)
++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.++++.++....+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4668999999999999999999999999999999 99999999999999998763555556778888988885 67888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 012981 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (452)
+.++.+++.......+++++++. ..++++++..+.+++ +..+.+.++++++...+..........+++.||+|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999988889988887 678899988776554 677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHH
Q 012981 194 SSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVK 240 (452)
Q Consensus 194 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 240 (452)
.+++...++++..+.+.. .+|+.|+++++.+++.+......++..
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~ 403 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMI 403 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888877666653 689999999999999998888877663
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=99.72 E-value=2e-15 Score=146.10 Aligned_cols=199 Identities=8% Similarity=-0.092 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCcc
Q 012981 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY 113 (452)
Q Consensus 35 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 113 (452)
.++.+|++++++.|..+++....+...+|+.++++ +|++++|+|+.+.++.+.....+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 45678999999999999999999999999999986 99999999999999987433788999999999999995 577
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 012981 114 HMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (452)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (452)
|+.++..+.........+.+.+++ ++++++++.++.+++ ++++.+++++++++..+......+...+.+.++.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999998888888887777 679999999888765 45567889998888888888777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHH
Q 012981 193 LSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVK 240 (452)
Q Consensus 193 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 240 (452)
...+....++++++++++. .+|..|+++++.+++.+.+.+......
T Consensus 365 ~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999884 799999999999999999988776554
No 30
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.72 E-value=5e-14 Score=134.68 Aligned_cols=231 Identities=19% Similarity=0.181 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchH
Q 012981 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHML 116 (452)
Q Consensus 37 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~ 116 (452)
+..|++.+...|..++...+++...+|+.+.+.+.+...+.+..+.++.++....+..++++...|..+|+..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 67899999999999999999999999999999999999999999999999996788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHH
Q 012981 117 GIHMQRGMFVLLLISVPLALI-WANTESLLVAAH----QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (452)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (452)
++..+.++.+.++.+++.+.. ..+++|+...+. .+++....+.+.+....++.++..+..++...+.+++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999988 779999998662 345556778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhH
Q 012981 192 VLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSA 271 (452)
Q Consensus 192 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 271 (452)
++..+++.++|+++++.+. +.+|..|.++++.++..+++.+.++..+|+..... . ..|...+ ..|..+-..
T Consensus 389 ~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~-----~~~~~~~-~~k~~l~~~ 459 (518)
T COG0728 389 MKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-G-----RGWGLFL-ILKLLLASA 459 (518)
T ss_pred hHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-----chhhHHH-HHHHHHHHH
Confidence 9999999999999997666 47888999999999999999998888875543322 1 1344444 455544444
Q ss_pred HHHHH
Q 012981 272 VMVCL 276 (452)
Q Consensus 272 ~~~~~ 276 (452)
+....
T Consensus 460 i~~~~ 464 (518)
T COG0728 460 IMAAA 464 (518)
T ss_pred HHHHH
Confidence 44433
No 31
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.68 E-value=1.3e-15 Score=143.78 Aligned_cols=175 Identities=20% Similarity=0.177 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 012981 269 PSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVM 348 (452)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 348 (452)
|.++++....+...+++.++++++ ++++++++.+.++..+...+..+++++..|.++++.|++|.|+.++..++..+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 778889999999999999999987 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHH
Q 012981 349 AVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIP 428 (452)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (452)
...++++.+++++++++++.+++..|++..+.+..+++++++..++.+++....+.+++.||++...+.++.+. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888889999999999999999999999999999999999999999986 88999
Q ss_pred HHHHHHH-HhC---CceeEEEe
Q 012981 429 SAILLAF-LLH---FGGRVKGF 446 (452)
Q Consensus 429 l~~~l~~-~~g---~~g~~~a~ 446 (452)
+.+++.+ .+| ..|++++.
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~ 179 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALAT 179 (342)
T ss_pred HhHHHHhcCccccccHHHHHHH
Confidence 9998887 666 55555543
No 32
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.66 E-value=5.7e-14 Score=138.84 Aligned_cols=187 Identities=22% Similarity=0.269 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCcc
Q 012981 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY 113 (452)
Q Consensus 35 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 113 (452)
.++.+|+.++.+.|...+++...+.+.+|+.++++ +|++++|.|+.+.++.... ..+...++....|..++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46789999999999999999999999999999999 9999999999999999888 888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 012981 114 HMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (452)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (452)
++.++..++........+++..++ ..+.+++...+.+++ +..+...++++++..++..+.......+++.||.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999998888 778888988776654 33377889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHH
Q 012981 193 LSSGITALLHILVCWILVFKSGLGSRGAALANSIS 227 (452)
Q Consensus 193 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~ 227 (452)
..+.++.++|++++++++. .+|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 9999999999999999984 88999999999 44
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.65 E-value=8.8e-13 Score=118.63 Aligned_cols=246 Identities=17% Similarity=0.191 Sum_probs=178.1
Q ss_pred HHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 012981 59 LQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALI 137 (452)
Q Consensus 59 ~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (452)
.+++...+++| +|++++|.|+....+..+.......|+++.... ..++|+++.++..+.........+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888999 999999999999999998844446677666544 224555666666666665544444333332
Q ss_pred HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 012981 138 WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGS 217 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~ 217 (452)
...+...+ .+++. ..++....+..+.........+.+++++|.+...................+.. .+.+.
T Consensus 78 ---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNL 148 (251)
T ss_pred ---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
Confidence 11111233 33322 23455667778888999999999999999999999999998877544444443 24488
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhccccccccCCccHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 012981 218 RGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALE 297 (452)
Q Consensus 218 ~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (452)
.+..++..++..+..+..+...+++ .+. ++ +.+..| .++.+.|..+.+.........+.++++.+. ++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~ 218 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRK--LRL--SF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cCC--Cc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 8899999999888877766533311 111 11 223334 789999999999999999999999999844 3899
Q ss_pred hHHHHHHHHHhHHHH-HHHHhhhhHHHHHHHH
Q 012981 298 TSVLSISLNTASTVW-MIPFGLSGAASTRVSN 328 (452)
Q Consensus 298 ~a~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~ 328 (452)
+|.|+++.++...+. .+..++++...|.+++
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999887 9999999999999886
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.19 E-value=2.6e-08 Score=97.66 Aligned_cols=398 Identities=12% Similarity=-0.031 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHhhCCCccchHHHHHH
Q 012981 44 WLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFAT-VTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQ 121 (452)
Q Consensus 44 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~-~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (452)
+.+.-.++.+++..+.+++-+.++-| ++++.+|..++=..+.. .+.+.-=.++..+.++.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 44556778888888888888887777 99999998855444432 22244456777776654333211122223333322
Q ss_pred HHHHHHHHHHHHHHHH-H-Hhh--HHH--HHHcC-CCHH---HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHhhcCC
Q 012981 122 RGMFVLLLISVPLALI-W-ANT--ESL--LVAAH-QDSE---ISKEAGLYARYMIPSIFAYAILQCL----VRFLQTQNI 187 (452)
Q Consensus 122 ~~~~~~~~~~~~~~~~-~-~~~--~~~--~~~~~-~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~ 187 (452)
....+..+.+.+++.+ + +.. ... ..+.. ..++ ..+.....+.+...+.....+...+ +..+.-.-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 3233333333322222 1 111 101 11111 1111 1122222333444444444444444 444444445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCC--cc-----ch-hhHHHHHHHHHHHHHHHHHHHhc--cc---cccccCCccH
Q 012981 188 VFPMVLSSGITALLHILVCWILVFKSGL--GS-----RG-AALANSISYWINVLLLAIYVKFS--SS---CAKTWTGFSK 254 (452)
Q Consensus 188 ~~~~~~~~~~~~~~~i~~~~~li~~~~~--g~-----~g-~~~a~~i~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~ 254 (452)
.+.-........+.+..+...... .++ +. .+ +.++..++++...+......... .. .+...++...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~-~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAER-SGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHh-cccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 544444444444444444333321 111 11 11 23445555555443322222111 11 0111111111
Q ss_pred ---HHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhc--CCCchhhhHHHHHHHHHhHH-HHHHHHhhhhHHHHHHHH
Q 012981 255 ---EALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGL--LPNPALETSVLSISLNTAST-VWMIPFGLSGAASTRVSN 328 (452)
Q Consensus 255 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~ 328 (452)
.+...-+++++.....+..++.-.+.+.-+.+++.. +.+ .++-|.|++++++.++ .-++...+..+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 011134788888888999999999999999999988 664 7889999999999888 566888899999888888
Q ss_pred hhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012981 329 ELGAGHP---------EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQC 399 (452)
Q Consensus 329 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 399 (452)
...+++. ++..+.....++....+++.+.....-.++.+.+++.++.=........++.++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 8765433 3456667777777777777777777777777888776533222235889999999999999999
Q ss_pred HHHHHHHhcCcchhhHHHHHH--HHHHHhHHHHHHHHHH-hCCceeE
Q 012981 400 VLSGIARGCGWQMIGAFVNLG--SYYLVGIPSAILLAFL-LHFGGRV 443 (452)
Q Consensus 400 ~~~~~l~~~g~~~~~~~~~~~--~~~~~~i~l~~~l~~~-~g~~g~~ 443 (452)
+..++.++....+.....+-. ...++.+..+|++... +|..|..
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI 449 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLI 449 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHH
Confidence 999999999988776664432 2346778888999985 6665543
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.07 E-value=8e-09 Score=99.88 Aligned_cols=185 Identities=17% Similarity=0.152 Sum_probs=167.7
Q ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHH-HHHHHHhhhhHHHHHHHHhhcCCCh
Q 012981 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTAST-VWMIPFGLSGAASTRVSNELGAGHP 335 (452)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~g~~~~ 335 (452)
+.+.|++.+++.|..+....+.....++...+++++ +.++++.+.++...+. -+-+..++..+..|.+++++|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 678999999999999999999999999999999998 4499999999888777 5558889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhH
Q 012981 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (452)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (452)
+......+++........+|.... +.+.+++...+..|+++...+..+.++..+..+...........+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999988888888887766 4566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhCCc--eeEEE
Q 012981 416 FVNLGSYYLVGIPSAILLAFLLHFG--GRVKG 445 (452)
Q Consensus 416 ~~~~~~~~~~~i~l~~~l~~~~g~~--g~~~a 445 (452)
+++..+. ++++++++++.+..|.+ |+.++
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala 211 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALA 211 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHH
Confidence 9999985 99999999999998775 44443
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.3e-06 Score=80.50 Aligned_cols=396 Identities=13% Similarity=-0.013 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhCCCccch
Q 012981 38 EVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVT-GFSFLVGLSSALETLCGQSYGAKQYHM 115 (452)
Q Consensus 38 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~-~~~~~~gl~~~~~~~~~~~~~~~~~~~ 115 (452)
......+.+.-.+..+++..+..+.-+.++-| ++++.+|..++-..+.+-. .+.--.++.-|..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 34455666666777777777777776666666 9999999987766554432 1222334444433221111 112334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC-CCHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 012981 116 LGIHMQRGMFVLLLISVPLALIWANTESLLVAAH-QDSE-ISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (452)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (452)
..+..+.+--+..+..+...-+++ .+.. .|+. ..+.-...+.+...+.....+...+.-..|..-+.+.-.+
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl------~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i 157 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWL------GFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAI 157 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHH------HHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 455555555555444444333322 1111 1111 0111112233444455555555555556666666666666
Q ss_pred HHHHHHHHHHHHHH-HHHhhc-CCccchhhHHHHHHHHHHHHHHHHHHHhccccc----------cccCCccHH--HHHh
Q 012981 194 SSGITALLHILVCW-ILVFKS-GLGSRGAALANSISYWINVLLLAIYVKFSSSCA----------KTWTGFSKE--ALNN 259 (452)
Q Consensus 194 ~~~~~~~~~i~~~~-~li~~~-~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~ 259 (452)
...+..++.-+..+ .++.+. .+++..-|+|.........+...+++.+.++.+ ..+++.... ....
T Consensus 158 ~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ff 237 (530)
T KOG2864|consen 158 AEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFF 237 (530)
T ss_pred HhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccc
Confidence 66666665533222 223222 445666667766665555552233332222200 001111000 0011
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcCCC-chhhhHHHHHHHHHhHH-HHHHHHhhhhHHHHHHHHhhcCCChHH
Q 012981 260 VFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPN-PALETSVLSISLNTAST-VWMIPFGLSGAASTRVSNELGAGHPEA 337 (452)
Q Consensus 260 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~g~~~~~~ 337 (452)
-++..+.........+.-.+...-+.++++.... .-.+-|.|.++++..++ .-++...+....-...++...+++.|+
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 2344444444555556666666666666653221 13367899999998877 667888899999999999888777666
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhh
Q 012981 338 ARLAV---CVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIG 414 (452)
Q Consensus 338 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 414 (452)
.|+.. .+.++....+++.......-.++....++.++.=....+...+++++...++.+++.+..++..+.+..+..
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 66554 445555555555555555556667777776533222235689999999999999999999999999887766
Q ss_pred HHHH---HHHHHHHhHHHHHHHHHHhCCcee
Q 012981 415 AFVN---LGSYYLVGIPSAILLAFLLHFGGR 442 (452)
Q Consensus 415 ~~~~---~~~~~~~~i~l~~~l~~~~g~~g~ 442 (452)
-..+ ++. -++.+.++|+++..+|..|.
T Consensus 398 ~~~n~~mlaf-SviflilsylL~~~~~~~Gl 427 (530)
T KOG2864|consen 398 DKHNKFMLAF-SVIFLILSYLLIRWFGLVGL 427 (530)
T ss_pred HhcccchhHH-HHHHHHHHHHHHHHhchhHH
Confidence 5533 232 36678899999999998654
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.06 E-value=1.2e-06 Score=77.18 Aligned_cols=316 Identities=12% Similarity=0.017 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC-h-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCcc
Q 012981 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LG-E-LPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY 113 (452)
Q Consensus 37 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg-~-~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~ 113 (452)
..+.++.++-+|+.+++....+...+.+.-++| -. + +.+|+|+++..+.-++ ..+...+-+....++ ++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchh
Confidence 346789999999999999999999999999987 33 2 4589999999999888 777777766644443 3333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HH-hhHHHH-HHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhH
Q 012981 114 HMLGIHMQRGMFVLLLISVPLALI-WA-NTESLL-VAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFP 190 (452)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 190 (452)
++ ++..........+...+..++ +- +...++ ..++-++++.+.+...+.++....++.++...+++++.-++++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 32 222222222332222232333 22 333333 366889999999999999999999999999999999987777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcc-chhh---HHHHHHHHHHHHH-HHHHHHhccccccccCCccHHHHHhHHHHHH
Q 012981 191 MVLSSGITALLHILVCWILVFKSGLGS-RGAA---LANSISYWINVLL-LAIYVKFSSSCAKTWTGFSKEALNNVFNFVR 265 (452)
Q Consensus 191 ~~~~~~~~~~~~i~~~~~li~~~~~g~-~g~~---~a~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (452)
....++......+++...++.. +... .... ++...+..+.+-+ ..-++..............+.+...++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence 7777766666555555555532 1111 1111 2222222222221 1111111111111122222234467999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhcCCCc----hhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHH----
Q 012981 266 LAIPSAVMVCLEMWSFEMMVLLSGLLPNP----ALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEA---- 337 (452)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~---- 337 (452)
+..|.+.......++..+.+.++++..+| ++++++..+.+...-+.+...+-+- +..|..-++-.+++..+
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~r-~~~paf~~~~~~~~~~~~~~~ 318 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTELR-AVYPAFDKNNPQNKLRNCGNP 318 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhHH-hhCchhhccCcccccccccCc
Confidence 99999999999999999999999984333 3566666555555444443332221 23333322111111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Q 012981 338 -ARLAVCVVLVMAVTEGILVGSVLI 361 (452)
Q Consensus 338 -~~~~~~~~~~~~~~~~~~~~~~~~ 361 (452)
.+..+++....+..+++..+..++
T Consensus 319 v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 319 VTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123567777777777777666554
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.51 E-value=1.5e-05 Score=64.88 Aligned_cols=79 Identities=25% Similarity=0.298 Sum_probs=73.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 012981 162 ARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (452)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 241 (452)
+++++++.++..+....++.+++.||+|.....+..+.++|++++++++ +++|..|+++++.+++.+...+..+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999997 48999999999999999999998888865
Q ss_pred c
Q 012981 242 S 242 (452)
Q Consensus 242 ~ 242 (452)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.37 E-value=9.3e-05 Score=73.07 Aligned_cols=202 Identities=12% Similarity=0.063 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCcc--
Q 012981 39 VKRQLWLSGPLISVSLLQFCLQMISVMFVGH--L-GELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY-- 113 (452)
Q Consensus 39 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-- 113 (452)
-++.++.+.....+++...+.+--|+.++.. + +.++-|.|++++.+-+++.=.+..-+....-...++...++++
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3778889999999999999999999999998 4 5899999999999999886777888888888888888765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc
Q 012981 114 -------HMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQ 185 (452)
Q Consensus 114 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 185 (452)
++..+.+...+.+...+++++.++ -...+.++.+++++.=..+.+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 235556677777777777776666 557777777665433223345677889999999999999999999998
Q ss_pred CChhHHHHHH---HHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 012981 186 NIVFPMVLSS---GITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (452)
Q Consensus 186 ~~~~~~~~~~---~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 241 (452)
...+.....+ .+..++-+..+++++.. ++|..|..+|+++...+..+..+.+.++
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8875544443 34444556677888865 7899999999999999999998888754
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.00034 Score=64.95 Aligned_cols=200 Identities=12% Similarity=0.047 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchH
Q 012981 40 KRQLWLSGPLISVSLLQFCLQMISVMFVG--H-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHML 116 (452)
Q Consensus 40 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~--~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~ 116 (452)
++..+.......+.+...+.+=-|.+++. . ++-++-|.|..++..-++..-.+...+.-....+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 45555555666677777777777888887 3 55667888988888888776677778888888888888877777766
Q ss_pred HHHH---HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 012981 117 GIHM---QRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (452)
Q Consensus 117 ~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (452)
++.. ...+.+...++++++.. .-.++..+.+.+++.=....+...+++.+..+|+.++..+..++..+....+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 6544 44455555555554444 3355666666654432223345678999999999999999999999887765443
Q ss_pred H---HHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 012981 193 L---SSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (452)
Q Consensus 193 ~---~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 241 (452)
. ...+..+..++.+++++. .+|..|..+|.++...+..+..+.+.++
T Consensus 399 ~~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334455566778888886 6788999999999988888877777654
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.62 E-value=0.011 Score=52.84 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=112.5
Q ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhc-CCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCC
Q 012981 256 ALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGL-LPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGH 334 (452)
Q Consensus 256 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~ 334 (452)
+....+++.++-+|..+++.+..++-.+.+.-+++ .-+..+.+|+|+++..+.-++..+...+.++...++.. +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 34678899999999999999999998888888876 33334569999999999999988888877766665532 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHH-HhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcch
Q 012981 335 PEAARLAVCVVLVMAVTEGIL-VGSVLILIRNV-WGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQM 412 (452)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 412 (452)
.+ -++........++..... ..+..--+.+. +.+++.-|+++-+.+...+.++....+++++....++++.=.+++.
T Consensus 81 rs-rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RS-RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 22 223333322222222212 12222223333 3445666889999999999999999999999999999998667777
Q ss_pred hhHHHHHHH
Q 012981 413 IGAFVNLGS 421 (452)
Q Consensus 413 ~~~~~~~~~ 421 (452)
.....++..
T Consensus 160 iV~~aSI~~ 168 (345)
T PF07260_consen 160 IVGSASIAD 168 (345)
T ss_pred EeehHHHHH
Confidence 666666654
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.38 E-value=0.031 Score=50.43 Aligned_cols=159 Identities=18% Similarity=0.125 Sum_probs=91.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHH-HHhhhhHHHHHHHHhhcCCChHHHHHHHH
Q 012981 265 RLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMI-PFGLSGAASTRVSNELGAGHPEAARLAVC 343 (452)
Q Consensus 265 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 343 (452)
|-+......+....+...+...++.+.. |+++.|.|+....+.++...+ ..+++++..-..+++..+ .++.++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3444455555555555555555555554 388999999999998887765 677888887777765432 223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHH
Q 012981 344 VVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 423 (452)
.......... ..... ...+...+.. ++. + ...........++..........+++.++.+.....++...
T Consensus 80 ~~~~~~~~~~-~i~~~----~~~~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFS-LIFLL----ILLIASFFGN-PSL-S--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHH-HHHHH----HHHHHHHcCC-chH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3332222222 22222 2222223333 321 1 11222222222578888889999999999999999888875
Q ss_pred HHhHHHHHHHHHH
Q 012981 424 LVGIPSAILLAFL 436 (452)
Q Consensus 424 ~~~i~l~~~l~~~ 436 (452)
+..+.+...+...
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T PF01943_consen 150 LLSLLLILLLLFL 162 (273)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554444
No 43
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.35 E-value=9.3e-05 Score=60.19 Aligned_cols=65 Identities=22% Similarity=0.152 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHHHHHHHHHHhCCceeEEEeEeee
Q 012981 385 LPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRVKGFSFFS 450 (452)
Q Consensus 385 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~g~~g~~~a~~~~~ 450 (452)
+++++++.++.++....+..+++.||+|..++.++.+. ++++++++++++.+|..|++++...+.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~~~G~~Gaa~a~~i~~ 66 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIPRFGIYGAAIATAISE 66 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 67899999999999999999999999999999999985 999999999999999999988776543
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.12 E-value=0.22 Score=45.82 Aligned_cols=318 Identities=11% Similarity=0.061 Sum_probs=172.0
Q ss_pred HHHHHHHHHhHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhH
Q 012981 90 FSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSI 169 (452)
Q Consensus 90 ~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (452)
..+..|++...+++++.+.=++|.+++...+.-...+....+.++..+ .-...++... .|=...+...
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si-----~yk~l~~~~F 141 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSI-----VYKILACALF 141 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhH-----HHHHHHHHHH
Confidence 556788888888999988777776666554444444433333333321 1111222211 1112233344
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 012981 170 FAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTW 249 (452)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (452)
...+...+...++.+.+|.+...+.-..+..+.+.+..++- +.++.|..++..++..+.......+..+.-+-+.+
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~- 217 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR- 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc-
Confidence 55566677777889999999999999999999888887765 67999999999999999888776666543221111
Q ss_pred CCccHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcCCCchhhhHH------HHHHHHHhHHHHHHHH-----hh
Q 012981 250 TGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSV------LSISLNTASTVWMIPF-----GL 318 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~i~~~~~~~~~-----~i 318 (452)
..++.. +..+--...++..+..+++-.+++++.=..+++.+..+. |.+..-...+...+.. .+
T Consensus 218 i~FdFL------~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~l 291 (467)
T COG4267 218 IGFDFL------LYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISL 291 (467)
T ss_pred cceehh------hhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeee
Confidence 112111 111122234555666777777777665443332222222 3333222222222222 22
Q ss_pred hhHHHHHHHHhh----cC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHH
Q 012981 319 SGAASTRVSNEL----GA-------GHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPI 387 (452)
Q Consensus 319 ~~~~~~~~~~~~----g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i 387 (452)
.+...+.--+.+ +. ++.++.....+..+.-..-+-...++.++++++.+...+.-|+- ..+.+++
T Consensus 292 ET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~v 367 (467)
T COG4267 292 ETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYV 367 (467)
T ss_pred eehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHH
Confidence 233333222211 11 22333444555555666667778889999999999998865542 3444444
Q ss_pred HHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHHHHHhHHHHHHHH
Q 012981 388 LAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLA 434 (452)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~ 434 (452)
-.++.-+.......-.+..=..+-|..+-.+.. ..+.|-.+.++..
T Consensus 368 d~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~-fli~N~ilT~i~l 413 (467)
T COG4267 368 DVLGVSCQIVFMSLLNIFLYFDYRRIALELTAL-FLISNGILTFIFL 413 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH-HHHHhHHHHHHHH
Confidence 444444444444444444444444444444333 2244444444433
No 45
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.93 E-value=0.17 Score=44.93 Aligned_cols=124 Identities=15% Similarity=0.226 Sum_probs=79.8
Q ss_pred HHHHhhcCCCchhhhHHHHHHHHHhHHHHHH-HHhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012981 284 MVLLSGLLPNPALETSVLSISLNTASTVWMI-PFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLIL 362 (452)
Q Consensus 284 ~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (452)
...++++.. ++++.|.|+....+..+...+ ..++.+...- ..++|.++.++..+.........++...+.
T Consensus 7 ~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (251)
T PF13440_consen 7 FLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL--- 77 (251)
T ss_pred HHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344444444 288999999999988887775 3444433322 233556666666666554444444333333
Q ss_pred hhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchhhHHHHHHHH
Q 012981 363 IRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSY 422 (452)
Q Consensus 363 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 422 (452)
...+...+ ++++ ....+.+..+..++..........+++.+|.+..........
T Consensus 78 -~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 131 (251)
T PF13440_consen 78 -AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS 131 (251)
T ss_pred -HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 33333333 3332 344566777788888999999999999999999999888875
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=64.26 E-value=46 Score=23.66 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012981 318 LSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVL 360 (452)
Q Consensus 318 i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (452)
++-.....+.+.+.+||++++++..+++.+++.+ ++.+++++
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~i-a~~~g~~~ 77 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSII-AIIIGIVI 77 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHH-HHHHHHHH
Confidence 3344455677788899999999999998888744 44444443
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=64.07 E-value=1.3e+02 Score=28.43 Aligned_cols=115 Identities=9% Similarity=0.095 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 012981 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (452)
+.....++.+.-..-+-...++. ...++.+..+++.++.. .+.+++-..+...+......-...--.++-+....
T Consensus 321 kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~ 396 (467)
T COG4267 321 KMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALE 396 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33344455554433344444444 56788888888876533 23445555555444444444444444566677777
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHH
Q 012981 194 SSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLA 236 (452)
Q Consensus 194 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~ 236 (452)
.+..-...|.++++++.. .|-.-...+..++.++...+.+
T Consensus 397 ~t~~fli~N~ilT~i~l~---lgp~~~g~gff~a~fl~vlv~~ 436 (467)
T COG4267 397 LTALFLISNGILTFIFLE---LGPGYYGVGFFLASFLYVLVAF 436 (467)
T ss_pred hhhHHHHHhHHHHHHHHH---hCccceehHHHHHHHHHHHHHH
Confidence 777777788888888773 3433333344444444444443
No 48
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=59.30 E-value=94 Score=29.97 Aligned_cols=74 Identities=8% Similarity=0.053 Sum_probs=51.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012981 267 AIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVL 346 (452)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 346 (452)
+-|..++.+---++-....++.....++..+ +.-+......|+|..+...+++.+|+.+..+-+|...-++
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ra---------l~~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRA---------LALLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhh---------hhhhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 4566666665555555556666655543223 3345566788999999999999999999998888777655
Q ss_pred HHH
Q 012981 347 VMA 349 (452)
Q Consensus 347 ~~~ 349 (452)
...
T Consensus 450 Afi 452 (510)
T KOG2468|consen 450 AFI 452 (510)
T ss_pred HHH
Confidence 433
No 49
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=55.66 E-value=1.5e+02 Score=26.35 Aligned_cols=85 Identities=2% Similarity=-0.103 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcchh
Q 012981 334 HPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMI 413 (452)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 413 (452)
..+..++..-.+..++...++.=++.-+.+++ ..++.++.+...-+. ..-|+.-..++..+.......-....|.+.
T Consensus 110 s~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg-~~fW~~~s~~f~~vY~~I~~L~~~r~r~~L 186 (261)
T PF10160_consen 110 SRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGG-WGFWFISSLVFALVYGFILILTPLRWRDRL 186 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCC-eehHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 34555555555555555555555556666665 455555444333333 333333444444444444444666777777
Q ss_pred hHHHHHHH
Q 012981 414 GAFVNLGS 421 (452)
Q Consensus 414 ~~~~~~~~ 421 (452)
|.+-+.-.
T Consensus 187 Par~SFY~ 194 (261)
T PF10160_consen 187 PARPSFYR 194 (261)
T ss_pred CCCccHHH
Confidence 66655544
No 50
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=54.86 E-value=2.2e+02 Score=28.06 Aligned_cols=50 Identities=6% Similarity=0.012 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC--hhhHHHHHHHHHHHHHH
Q 012981 39 VKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LG--ELPLSGASMATSFATVT 88 (452)
Q Consensus 39 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg--~~~~a~~~~~~~i~~~~ 88 (452)
+||-+.++.+-+.+++.....+..-..+... .| +...|..=...++...+
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi 63 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI 63 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 4777889999998888888777777777666 55 34444444445555544
No 51
>PF14184 YrvL: Regulatory protein YrvL
Probab=40.66 E-value=1.8e+02 Score=22.93 Aligned_cols=110 Identities=8% Similarity=0.086 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 012981 121 QRGMFVLLLISVPLALIWANTESLLVAAHQDSEISK-EAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITA 199 (452)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 199 (452)
.......+...++.+...+....+++++|.+-|... ...-.+-....+.|+......+...+.-.+-++... .....
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHH
Confidence 334444444455555556677778888876643322 222333444567777777777766665553333332 23444
Q ss_pred HHHHHHHHHHHhhcCCccchhhHHHHHHHHHHH
Q 012981 200 LLHILVCWILVFKSGLGSRGAALANSISYWINV 232 (452)
Q Consensus 200 ~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~ 232 (452)
.+...+++..++.-+.=+.+..+.+..--++..
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is~~~e~i~al 115 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISISTLSEIIFAL 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeCcHHHHHHHH
Confidence 566777777766555555555555544433333
No 52
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=37.16 E-value=1.6e+02 Score=27.74 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC-hhhHHHHHHHHH
Q 012981 48 PLISVSLLQFCLQMISVMFVGHLG-ELPLSGASMATS 83 (452)
Q Consensus 48 p~~~~~~~~~~~~~i~~~~i~~lg-~~~~a~~~~~~~ 83 (452)
....--..+....+.++..+..++ |-.++.......
T Consensus 53 ~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~ 89 (350)
T PTZ00343 53 LFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVG 89 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence 333334444555666777776666 666665555443
No 53
>PRK10739 putative antibiotic transporter; Provisional
Probab=31.59 E-value=3.3e+02 Score=23.24 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHHHHH
Q 012981 323 STRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVAS 383 (452)
Q Consensus 323 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 383 (452)
.|..-..-++.+.++.|+..++.. .....+.+.+.++.+.+.++|.-+-+..+.+..
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~----~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGG 77 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIREL----LIALLVMLVFLFAGEKILAFLNLRTETVSISGG 77 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 344444455566667777777644 444455567778889999988765544544433
No 54
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=28.77 E-value=5.3e+02 Score=24.71 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=29.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH-HcCCC
Q 012981 112 QYHMLGIHMQRGMFVLLLISVPLALI-WANTESLLV-AAHQD 151 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~ 151 (452)
++++.+++++.+...+.....+...+ ....-|+.. ..+.+
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35778999999999999888877766 556666655 44433
No 55
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=25.92 E-value=5.6e+02 Score=24.43 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCccchHHHHHHHH
Q 012981 45 LSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRG 123 (452)
Q Consensus 45 ~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (452)
.|.-++.+++.+.+...+-+.+.-+ +|+..++.-+-+.++.-++ +. -...+.+++-.+|++.......
T Consensus 59 ig~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilv-Fa----------EVlPKt~Aa~~perva~~~s~~ 127 (423)
T COG4536 59 IGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILV-FA----------EVLPKTIAALYPERVALPSSFI 127 (423)
T ss_pred eeeeeecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HH----------HhcchHHhhhChhhhhhhhhHH
Confidence 4556677777777777777766666 8888766655555444333 11 3345555666778777666665
Q ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHcCCC
Q 012981 124 MFVLLLISVPLALI-WANTESLLVAAHQD 151 (452)
Q Consensus 124 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (452)
+.....+.-++..+ -.+..-++.+++.+
T Consensus 128 l~~l~~l~~Plv~lln~it~~llrl~gi~ 156 (423)
T COG4536 128 LAILVRLFGPLVWLLNAITRRLLRLLGIN 156 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 55555555555444 45667777777643
No 56
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.83 E-value=4.6e+02 Score=22.82 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=21.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC
Q 012981 112 QYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAH 149 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (452)
+++...+.+..++...+++-.++++++.+..++..+++
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 34444455555555555544455555666666666665
No 57
>PRK03612 spermidine synthase; Provisional
Probab=24.62 E-value=7.3e+02 Score=24.98 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 012981 201 LHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYV 239 (452)
Q Consensus 201 ~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~ 239 (452)
-.++..++++ +.+|..+..+....-++...++.++..
T Consensus 161 G~l~~~~vLl--p~lG~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 161 GGLAFPFLLL--PRLGLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred HHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444 467877766655555555554444333
No 58
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=24.14 E-value=6.7e+02 Score=24.35 Aligned_cols=79 Identities=9% Similarity=0.103 Sum_probs=39.1
Q ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHhhcCCCh
Q 012981 256 ALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHP 335 (452)
Q Consensus 256 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~ 335 (452)
++++.++.++.++|..+.-... +.....+... +.|.+++++..-+.--... +++-+.
T Consensus 205 ~~~~~~~~~~~~~~~l~~p~ii-----l~~i~~g~~t--~teaa~~~~~~~l~i~~~~----------------~~~~~~ 261 (416)
T PF06808_consen 205 SLKERWRAFKRAIPALLIPVII-----LGGIYLGIFT--PTEAAAVAVVYALVIGLFV----------------YRRLSW 261 (416)
T ss_pred hHHHHHHHHHhcchHHHHHHHH-----HHHhhhcccc--hhhhhhhhHHHHHHHHHhh----------------hcccCh
Confidence 4566667777777655443331 1222333333 5566665554332111000 444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012981 336 EAARLAVCVVLVMAVTEGILVG 357 (452)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~ 357 (452)
++..+..+++.+....+...++
T Consensus 262 ~~l~~~l~~~~~~~~~i~~iia 283 (416)
T PF06808_consen 262 KDLWRALVETARTTGMILFIIA 283 (416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 6666667666666655444433
No 59
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.20 E-value=1.2e+02 Score=23.57 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 012981 219 GAALANSISYWINVLLLAIYVK 240 (452)
Q Consensus 219 g~~~a~~i~~~~~~~~~~~~~~ 240 (452)
|..++.+.+-+...++..++++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333443
No 60
>PRK10995 inner membrane protein; Provisional
Probab=20.12 E-value=5.8e+02 Score=22.15 Aligned_cols=54 Identities=9% Similarity=-0.025 Sum_probs=31.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhccCcHHHHHH
Q 012981 323 STRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKY 380 (452)
Q Consensus 323 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 380 (452)
.|..-..-+..+.++.++..++.. +....+.++..+..+.+.+.|.-+.+..+.
T Consensus 25 ~pif~~lt~~~~~~~r~~ia~~~~----~~a~~ill~f~~~G~~il~~fgIs~~a~rI 78 (221)
T PRK10995 25 VALFLGLSGNMTPEERNRQALMAS----VYVFAIMMVAFYAGQLVMSTFGISIPGLRI 78 (221)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 344444444556666676777644 444445556667777777777654443443
Done!