Query 012981
Match_columns 452
No_of_seqs 260 out of 1846
Neff 10.6
Searched_HMMs 13730
Date Mon Mar 25 19:58:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012981.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012981hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 41.6 86 0.0063 25.5 16.3 22 214-235 375-396 (417)
2 d1nkzb_ f.3.1.1 (B:) Light-har 12.7 1E+02 0.0075 16.1 4.1 34 334-367 7-40 (41)
3 d1m56d_ f.23.8.1 (D:) Bacteria 7.4 1.8E+02 0.013 15.3 5.1 33 330-362 4-36 (42)
4 d1qled_ f.23.8.1 (D:) Bacteria 6.2 2.2E+02 0.016 15.1 5.1 33 330-362 5-37 (43)
5 d1ijdb_ f.3.1.1 (B:) Light-har 5.9 2.2E+02 0.016 14.7 4.0 32 334-365 8-39 (40)
6 d2a65a1 f.54.1.1 (A:5-513) Na( 4.2 9.5E+02 0.069 20.1 11.0 19 258-276 442-460 (509)
7 d1su0b_ d.224.1.2 (B:) IscU ho 3.6 6.1E+02 0.044 16.9 4.8 29 317-345 61-89 (136)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 3.2 5.8E+02 0.042 15.9 8.3 18 260-277 70-87 (100)
9 d1xjsa_ d.224.1.2 (A:) NifU {B 2.7 7.9E+02 0.058 16.5 4.5 30 317-346 67-96 (147)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 2.5 9.6E+02 0.07 17.0 6.9 13 264-276 137-149 (199)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=41.57 E-value=86 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=8.7
Q ss_pred CCccchhhHHHHHHHHHHHHHH
Q 012981 214 GLGSRGAALANSISYWINVLLL 235 (452)
Q Consensus 214 ~~g~~g~~~a~~i~~~~~~~~~ 235 (452)
..|.....+...+...+..++.
T Consensus 375 ~~g~~~~~~~~~~~~~~~~~~~ 396 (417)
T d1pv7a_ 375 SIGFQGAYLVLGLVALGFTLIS 396 (417)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHHHH
Confidence 3455444433333333333333
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=12.72 E-value=1e+02 Score=16.09 Aligned_cols=34 Identities=6% Similarity=-0.138 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012981 334 HPEAARLAVCVVLVMAVTEGILVGSVLILIRNVW 367 (452)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (452)
+.++..+.+..+.+....+.+..=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4578888889999988888887777776666553
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.38 E-value=1.8e+02 Score=15.33 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=20.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012981 330 LGAGHPEAARLAVCVVLVMAVTEGILVGSVLIL 362 (452)
Q Consensus 330 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (452)
.|+-|.+...+...-.+++.....+.+...+++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777666655555444443
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=6.24 E-value=2.2e+02 Score=15.12 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=20.2
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012981 330 LGAGHPEAARLAVCVVLVMAVTEGILVGSVLIL 362 (452)
Q Consensus 330 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (452)
.|+-|.+...+...-.+++....++.+...+++
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~lif 37 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVLVF 37 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776666666555555444443
No 5
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=5.93 E-value=2.2e+02 Score=14.72 Aligned_cols=32 Identities=6% Similarity=-0.068 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012981 334 HPEAARLAVCVVLVMAVTEGILVGSVLILIRN 365 (452)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (452)
+.++..+.+..+.+....+.+..=++.+...+
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45778888888888888777766665554443
No 6
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=4.24 E-value=9.5e+02 Score=20.14 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=13.6
Q ss_pred HhHHHHHHHHhhhHHHHHH
Q 012981 258 NNVFNFVRLAIPSAVMVCL 276 (452)
Q Consensus 258 ~~~~~~~~~~~p~~~~~~~ 276 (452)
+.++-..|+-.|..+....
T Consensus 442 ~~~~~~~~~i~Pi~l~~il 460 (509)
T d2a65a1 442 RIYYYVMRYITPAFLAVLL 460 (509)
T ss_dssp THHHHHHHTHHHHHHHHHH
T ss_pred HHHHHheeeeeHhhhhhee
Confidence 4567778888898876544
No 7
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=3.63 E-value=6.1e+02 Score=16.88 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHhhcCCChHHHHHHHHHH
Q 012981 317 GLSGAASTRVSNELGAGHPEAARLAVCVV 345 (452)
Q Consensus 317 ~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 345 (452)
++++|....+++....++.+++.+.....
T Consensus 61 ai~~ASasil~e~i~gk~~~e~~~l~~~~ 89 (136)
T d1su0b_ 61 TISTASSSMMTDAVIGKSKEEALALADIF 89 (136)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 57888888999988888888888776553
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.19 E-value=5.8e+02 Score=15.89 Aligned_cols=18 Identities=11% Similarity=0.359 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 012981 260 VFNFVRLAIPSAVMVCLE 277 (452)
Q Consensus 260 ~~~~~~~~~p~~~~~~~~ 277 (452)
.-|+.-.-+|..+-....
T Consensus 70 ~LEiiWTviP~lILi~l~ 87 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAIG 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456666666766544443
No 9
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Probab=2.72 E-value=7.9e+02 Score=16.50 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012981 317 GLSGAASTRVSNELGAGHPEAARLAVCVVL 346 (452)
Q Consensus 317 ~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 346 (452)
++++|....+++....++.+++.+......
T Consensus 67 ai~~ASasil~e~~~gk~~~~a~~l~~~~~ 96 (147)
T d1xjsa_ 67 SISMASASMMTQAIKGKDIETALSMSKIFS 96 (147)
T ss_dssp HHHHHHHHHHHHHHTTSBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 577888888888888888888887766543
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.50 E-value=9.6e+02 Score=16.96 Aligned_cols=13 Identities=0% Similarity=-0.130 Sum_probs=5.7
Q ss_pred HHHHhhhHHHHHH
Q 012981 264 VRLAIPSAVMVCL 276 (452)
Q Consensus 264 ~~~~~p~~~~~~~ 276 (452)
-+.+.|...+.+.
T Consensus 137 ~~~g~~i~~s~lT 149 (199)
T d1iwga7 137 GQIQGALVGIAMV 149 (199)
T ss_dssp GTHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHH
Confidence 3344454444433
Done!