BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012982
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 196/421 (46%), Gaps = 49/421 (11%)
Query: 36 SGYLPVNPATGSAIFYAYYEAQTPITSSLSQTPLLIWLQGGPGCSSMTGNFLELGPWRVT 95
+GYL V F+ + P ++ P+++WL GGPGCSS+TG F ELGP +
Sbjct: 18 TGYLDVEDEDKHFFFWTFESRNDP-----AKDPVILWLNGGPGCSSLTGLFFELGPSSIG 72
Query: 96 LSQRQNAEQLSLKP--NPGSWNRIFGLLFIDNPIGAGFSFAATNDEIPRDQISVAKHLFA 153
LKP NP SWN ++F+D P+ GFS++ ++ + ++ K ++
Sbjct: 73 ---------PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGV--SNTVAAGKDVYN 121
Query: 154 AITGFINLDPLFKNR--PIYITGESYAGKYVPAIGYFILKQNKQLPSSKRVNLQGVAIGN 211
+ F + P + N+ +I GESYAG Y+P IL + NL V IGN
Sbjct: 122 FLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSH-----KDRNFNLTSVLIGN 176
Query: 212 GLTDPATQVATHALNAYFSG----LINERQKDELEKAQGEAIRLVK-----MGNWS--EA 260
GLTDP TQ + A G ++ + +E + + L++ WS A
Sbjct: 177 GLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPA 236
Query: 261 TNARNELLDLLQDMTGLATLYDFSKKVP-----YPT-ELVTRLLRIDEVKKALGAKETIV 314
T N TG +YD K YPT + + L D VK+A+GA E
Sbjct: 237 TIYCNNAQLAPYQRTG-RNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGA-EVDH 294
Query: 315 FEDCS-DVVGEALHA-DEMKSVKFMV-EFLVRNTKVLLYQGHFDLRDGVVSTEAWVKTMK 371
+E C+ D+ L A D MK V + L ++ +L+Y G D + +AW +
Sbjct: 295 YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLP 354
Query: 372 WEGIESFLMAERKVW--KVKEELAGYVQKWGNLSHVVVLGAGHLVPTDQPLNSQIMIEDW 429
W+ E F + + W + +E+AG V+ + + +++ V GH+VP D P N+ M+ +W
Sbjct: 355 WKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEW 414
Query: 430 V 430
+
Sbjct: 415 I 415
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 195/421 (46%), Gaps = 49/421 (11%)
Query: 36 SGYLPVNPATGSAIFYAYYEAQTPITSSLSQTPLLIWLQGGPGCSSMTGNFLELGPWRVT 95
+GYL V F+ + P ++ P+++WL GGPGCSS+TG F LGP +
Sbjct: 18 TGYLDVEDEDKHFFFWTFESRNDP-----AKDPVILWLNGGPGCSSLTGLFFALGPSSIG 72
Query: 96 LSQRQNAEQLSLKP--NPGSWNRIFGLLFIDNPIGAGFSFAATNDEIPRDQISVAKHLFA 153
LKP NP SWN ++F+D P+ GFS++ ++ + ++ K ++
Sbjct: 73 ---------PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGV--SNTVAAGKDVYN 121
Query: 154 AITGFINLDPLFKNR--PIYITGESYAGKYVPAIGYFILKQNKQLPSSKRVNLQGVAIGN 211
+ F + P + N+ +I G SYAG Y+P IL + NL V IGN
Sbjct: 122 FLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSH-----KDRNFNLTSVLIGN 176
Query: 212 GLTDPATQVATHALNAYFSG----LINERQKDELEKAQGEAIRLVK-----MGNWS--EA 260
GLTDP TQ + A G ++ + +E + + L++ WS A
Sbjct: 177 GLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPA 236
Query: 261 TNARNELLDLLQDMTGLATLYDFSK-----KVPYPT-ELVTRLLRIDEVKKALGAKETIV 314
T N TG +YD K + YPT + + L D VK+A+GA E
Sbjct: 237 TIYCNNAQLAPYQRTG-RNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGA-EVDH 294
Query: 315 FEDCS-DVVGEALHA-DEMKSVKFMV-EFLVRNTKVLLYQGHFDLRDGVVSTEAWVKTMK 371
+E C+ D+ L A D MK V + L ++ +L+Y G D + +AW +
Sbjct: 295 YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLP 354
Query: 372 WEGIESFLMAERKVW--KVKEELAGYVQKWGNLSHVVVLGAGHLVPTDQPLNSQIMIEDW 429
W+ E F + + W + +E+AG V+ + + +++ V GH+VP D P N+ M+ +W
Sbjct: 355 WKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEW 414
Query: 430 V 430
+
Sbjct: 415 I 415
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 125/443 (28%), Positives = 194/443 (43%), Gaps = 61/443 (13%)
Query: 36 SGYLPV-----NPATGSAIFYAYYEAQTPITSSLSQTPLLIWLQGGPGCSSMTGNFLELG 90
+G++P+ + S + Y +++ ++ PL+IWL GGPGCSSM G +E G
Sbjct: 31 AGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVESG 90
Query: 91 PWRVTLSQRQNAEQLSLKPNPGSWNRIFGLLFIDNPIGAGFSFAATNDE-------IPRD 143
P+RV + L N GSW LLFID P G GFS DE D
Sbjct: 91 PFRVNSDGK-------LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDED 143
Query: 144 QISVAKHLFAAITGFINLDPLFKNRPIYITGESYAGKYVPAIGYFILKQNK-QLPSSKRV 202
V KH + + + P R I ++GESYAG+Y+P IL NK
Sbjct: 144 LEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTY 203
Query: 203 NLQGVAIGNGLTDPATQVATHALNAYFSGLINERQKD--ELEKAQGEAIRLVKMG----- 255
+L+ + IGNG DP TQ ++ A LI+E + L A L+
Sbjct: 204 DLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTDEA 263
Query: 256 ---NWSEATNARNELLDLLQDMTGLAT-----LYDFSKKVPYPT---------ELVTRLL 298
++ E N N LL ++ + T +Y+F+ K YP+ V++
Sbjct: 264 AHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWPKDISFVSKFF 323
Query: 299 RIDEVKKALGAKETIV--FEDCSDVVGEALHADEMK-SVKFMVEFLVRNTKVLLYQGHFD 355
V +L + +++C++ VG L K S+ + L +++L+ G D
Sbjct: 324 STPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLFNGDKD 383
Query: 356 L---RDGVVSTEAWVKTMKWEGIESF--------LMAERKVWKVKEELAGYVQKWGNLSH 404
L GV+ T + +KW GI+ F + + K EE +GYV+ NL+
Sbjct: 384 LICNNKGVLDT---IDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTF 440
Query: 405 VVVLGAGHLVPTDQPLNSQIMIE 427
V V A H+VP D+ L S+ +++
Sbjct: 441 VSVYNASHMVPFDKSLVSRGIVD 463
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 115/207 (55%), Gaps = 32/207 (15%)
Query: 36 SGYLPVNPATGSA-IFYAYYEAQTPITSSLSQTPLLIWLQGGPGCSSMTGNFLELGPWRV 94
SGYL ++GS + Y + E+Q +S P+++WL GGPGCSS+ G E GP+ V
Sbjct: 23 SGYLK---SSGSKHLHYWFVESQKDPENS----PVVLWLNGGPGCSSLDGLLTEHGPFLV 75
Query: 95 TLSQRQNAEQLSLKPNPGSWNRIFGLLFIDNPIGAGFS-----FAATNDEIPRDQISVAK 149
+ ++L+ NP SWN I +L++++P G GFS F ATND VA+
Sbjct: 76 ------QPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATND------TEVAQ 123
Query: 150 HLFAAITGFINLDPLFKNRPIYITGESYAGKYVPAIGYFILKQNKQLPSSKRVNLQGVAI 209
F A+ F L P +KN +++TGESYAG Y+P + ++ Q PS +NLQG+A+
Sbjct: 124 SNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM----QDPS---MNLQGLAV 176
Query: 210 GNGLTDPATQVATHALNAYFSGLINER 236
GNGL+ + AY+ GL+ R
Sbjct: 177 GNGLSSYEQNDNSLVYFAYYHGLLGNR 203
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 303 VKKALGAKETIVFEDCSDVVGEALHADEMKSVKFMVEFLVRNTK--VLLYQGHFDLRDGV 360
V+KAL E + D + + + +S+ L+ + K +LLY G D+
Sbjct: 318 VRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNF 377
Query: 361 VSTEAWVKTMKWEGIESFLMAERKVWKVK-----EELAGYVQKWGNLSHVVVLGAGHLVP 415
+ E +V ++ + + +R+ W VK E++AG+V+++ +++ + + GAGH+VP
Sbjct: 378 MGDEWFVDSLNQK-----MEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVP 432
Query: 416 TDQPLNSQIMIEDWV 430
TD+PL + M ++
Sbjct: 433 TDKPLAAFTMFSRFL 447
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 114/207 (55%), Gaps = 32/207 (15%)
Query: 36 SGYLPVNPATGSA-IFYAYYEAQTPITSSLSQTPLLIWLQGGPGCSSMTGNFLELGPWRV 94
SGYL +GS + Y + E+Q +S P+++WL GGPGCSS+ G E GP+ V
Sbjct: 25 SGYLK---GSGSKHLHYWFVESQKDPENS----PVVLWLNGGPGCSSLDGLLTEHGPFLV 77
Query: 95 TLSQRQNAEQLSLKPNPGSWNRIFGLLFIDNPIGAGFS-----FAATNDEIPRDQISVAK 149
+ ++L+ NP SWN I +L++++P G GFS F ATND VA+
Sbjct: 78 Q------PDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATND------TEVAQ 125
Query: 150 HLFAAITGFINLDPLFKNRPIYITGESYAGKYVPAIGYFILKQNKQLPSSKRVNLQGVAI 209
F A+ F L P +KN +++TGESYAG Y+P + ++ Q PS +NLQG+A+
Sbjct: 126 SNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM----QDPS---MNLQGLAV 178
Query: 210 GNGLTDPATQVATHALNAYFSGLINER 236
GNGL+ + AY+ GL+ R
Sbjct: 179 GNGLSSYEQNDNSLVYFAYYHGLLGNR 205
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 36 SGYLPVNPATGSAIFYAYYEAQTPITSSLSQTPLLIWLQGGPGCSSMT-GNFLELGPWRV 94
SGY+ V+ G ++FY EA PL++WL GGPGCSS+ G ELG +RV
Sbjct: 21 SGYITVDEGAGRSLFYLLQEA----PEDAQPAPLVLWLNGGPGCSSVAYGASEELGAFRV 76
Query: 95 TLSQRQNAEQLSLKPNPGSWNRIFGLLFIDNPIGAGFSFAATNDEIPRDQISVAKH-LFA 153
L N WN++ +LF+D+P G GFS+ T+ +I + H +A
Sbjct: 77 ------KPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYA 130
Query: 154 AITGFINLDPLFKNRPIYITGESYAGKYVPAIGYFILKQNKQLPSSKRVNLQGVAIGNGL 213
+ + P +K R YI GESYAG YVP + + + + +NL+G +GNGL
Sbjct: 131 FLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV-----INLKGFMVGNGL 185
Query: 214 TD 215
D
Sbjct: 186 ID 187
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 36 SGYLPVNPATGSAIFYAYYEAQTPITSSLSQTPLLIWLQGGPGCSSMT-GNFLELGPWRV 94
SGY+ V+ G ++FY EA PL++WL GGPGCSS+ G ELG +RV
Sbjct: 22 SGYITVDEGAGRSLFYLLQEA----PEDAQPAPLVLWLNGGPGCSSVAYGASEELGAFRV 77
Query: 95 TLSQRQNAEQLSLKPNPGSWNRIFGLLFIDNPIGAGFSFAATNDEIPRDQISVAKH-LFA 153
L N WN++ +LF+D+P G GFS+ T+ +I + H +A
Sbjct: 78 ------KPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYA 131
Query: 154 AITGFINLDPLFKNRPIYITGESYAGKYVPAIGYFILKQNKQLPSSKRVNLQGVAIGNGL 213
+ + P +K R YI GESYAG YVP + + + + +NL+G +GNGL
Sbjct: 132 FLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV-----INLKGFMVGNGL 186
Query: 214 TD 215
D
Sbjct: 187 ID 188
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 36 SGYLPVNPATGSAIFYAYYEAQTPITSSLSQTPLLIWLQGGPGCSSMT-GNFLELGPWRV 94
SGY+ V+ G ++FY EA PL++WL GGPGCSS+ G ELG +RV
Sbjct: 26 SGYITVDEGAGRSLFYLLQEA----PEDAQPAPLVLWLNGGPGCSSVAYGASEELGAFRV 81
Query: 95 TLSQRQNAEQLSLKPNPGSWNRIFGLLFIDNPIGAGFSFAATNDEIPRDQISVAKH-LFA 153
L N WN++ +LF+D+P G GFS+ T+ +I + H +A
Sbjct: 82 ------KPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYA 135
Query: 154 AITGFINLDPLFKNRPIYITGESYAGKYVPAIGYFILKQNKQLPSSKRVNLQGVAIGNGL 213
+ + P +K R YI GESYAG YVP + + + + +NL+G +GNGL
Sbjct: 136 FLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV-----INLKGFMVGNGL 190
Query: 214 TD 215
D
Sbjct: 191 ID 192
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 36 SGYLPVNPATGSAIFYAYYEAQTPITSSLSQTPLLIWLQGGPGCSSMT-GNFLELGPWRV 94
SGY+ V+ G ++FY EA PL++WL GGPGCSS+ G ELG +RV
Sbjct: 26 SGYITVDEGAGRSLFYLLQEA----PEDAQPAPLVLWLNGGPGCSSVAYGASEELGAFRV 81
Query: 95 TLSQRQNAEQLSLKPNPGSWNRIFGLLFIDNPIGAGFSFAATNDEIPRDQISVAKH-LFA 153
+ L N WN++ +LF+D+P G GFS+ T+ +I + H +A
Sbjct: 82 KPAG------AGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYA 135
Query: 154 AITGFINLDPLFKNRPIYITGESYAGKYVPAIGYFILKQNKQLPSSKRVNLQGVAIGNGL 213
+ + P +K R YI GESYAG YVP + + + + +NL+G +GNGL
Sbjct: 136 FLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV-----INLKGFMVGNGL 190
Query: 214 TD 215
D
Sbjct: 191 ID 192
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 15/210 (7%)
Query: 31 ALPTKSGYLPVNPATGSAIFYAYYEAQTPITSSLSQTPLLIWLQGGPGCSSMT-GNFLEL 89
A GY+ ++ G A++Y + Q T+ + PL++WL GGPGCSS+ G EL
Sbjct: 21 AFGMYGGYVTIDDNNGRALYYWF---QEADTADPAAAPLVLWLNGGPGCSSIGLGAMQEL 77
Query: 90 GPWRVTLSQRQNAEQLSLKPNPGSWNRIFGLLFIDNPIGAGFSFAATNDEIPRDQISVAK 149
G +RV N E L L N +WN+ +LF ++P G GFS++ T+ ++ +A+
Sbjct: 78 GAFRV----HTNGESLLL--NEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDDKMAQ 131
Query: 150 HLFAAITGFINLDPLFKNRPIYITGESYAGKYVPAIGYFILKQNKQLPSSKRVNLQGVAI 209
+ + + P + R YI GES G ++P + + + P +N QG+ +
Sbjct: 132 DTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSPF---INFQGLLV 186
Query: 210 GNGLTDPATQVATHALNAYFSGLINERQKD 239
+GLT+ + + + GLI++ +D
Sbjct: 187 SSGLTNDHEDMIGMFESWWHHGLISDETRD 216
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 303 VKKALGAKETIVFEDCSDVVGEALHADEMKSV--KFMVEFLVRNTKVLLYQGHFDLRDGV 360
V+KAL E + D + + + +S+ +++ + ++LLY G D+
Sbjct: 20 VRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNF 79
Query: 361 VSTEAWVKTMKWEGIESFLMAERKVWKVK-----EELAGYVQKWGNLSHVVVLGAGHLVP 415
+ E +V ++ + + +R+ W VK E++AG+V+++ +++ + + GAGH+VP
Sbjct: 80 MGDEWFVDSLNQK-----MEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVP 134
Query: 416 TDQPLNSQIMIEDWV 430
TD+PL + M ++
Sbjct: 135 TDKPLAAFTMFSRFL 149
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 26/144 (18%)
Query: 298 LRIDEVKKALGAKETIVFED----CSDVV----GEALHADEMKSVKFMVEFLVRNTKVLL 349
L + EV+ AL A + + E CS+ + G+A AD++ V E + +V +
Sbjct: 16 LNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQA--ADDLLPV--YRELIQAGLRVWV 71
Query: 350 YQGHFDLRDGVVSTEAWVKTMKWEGIESFLMAERKVW------KVKEELAGYVQKWGNLS 403
Y G D V ST + + + + W + E+ G+ ++ L+
Sbjct: 72 YSGDTDSVVPVSSTR--------RSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 404 HVVVLGAGHLVPTDQPLNSQIMIE 427
+V V GAGHLVP +P + ++ +
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFK 147
>pdb|1ECF|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECF|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECG|A Chain A, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECG|B Chain B, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECB|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECC|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECC|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECJ|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
Length = 504
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 287 VPYPTELVTRLLRIDEVKKALGAKETIVFEDCSDVVGEALHADEMKSVKFMVEFL--VRN 344
+P TEL+ +DE+++ +GA + ++F+D +D++ +A+ A+ +F V
Sbjct: 409 MPSATELIAHGREVDEIRQIIGA-DGLIFQDLNDLI-DAVRAENPDIQQFECSVFNGVYV 466
Query: 345 TKVLLYQGHFDLRDGVVSTEA 365
TK + QG+ D D + + +A
Sbjct: 467 TKD-VDQGYLDFLDTLRNDDA 486
>pdb|3LF6|A Chain A, Crystal Structure Of Hiv Epitope-Scaffold
4e10_1xiza_s0_001_n
pdb|3LF6|B Chain B, Crystal Structure Of Hiv Epitope-Scaffold
4e10_1xiza_s0_001_n
Length = 161
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 179 GKYVPAIGYFILKQNKQLPSSKRVNLQGVAIGNGLTDPATQVATHALNAYFSGLINERQK 238
G V ++ + + P+ V GVAI P T NA G++ E
Sbjct: 43 GMVVSDFADHVITREQNFPTGLPVEPVGVAI------PHTDSKYVRQNAISVGILAEPVN 96
Query: 239 DELEKAQGEA----IRLVKM---GNWSEATNARNELLDLLQD 273
E A GE +R+V M GNW + TN ++D++QD
Sbjct: 97 --FEDAGGEPDPVPVRVVFMLALGNWFDITNVLWWIMDVIQD 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,334,113
Number of Sequences: 62578
Number of extensions: 560329
Number of successful extensions: 1483
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1429
Number of HSP's gapped (non-prelim): 43
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)