BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012984
         (452 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
           Tomentosa 4- Coumarate--Coa Ligase
 pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
           Tomentosa 4- Coumarate--Coa Ligase
 pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
           Tomentosa 4- Coumarate:coa Ligase
          Length = 536

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 344 AGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVLMSIPNAKVRR- 402
           AG +PV F  +S KSQ          DE   +I K+ + +K +K V  + +IP A   + 
Sbjct: 472 AGEVPVAFVVKSEKSQATE-------DEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKI 524

Query: 403 MRERVIELMPGV 414
           +R+ + E + G+
Sbjct: 525 LRKNLKEKLAGI 536


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,732,396
Number of Sequences: 62578
Number of extensions: 585653
Number of successful extensions: 981
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 2
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)