Query 012984
Match_columns 452
No_of_seqs 208 out of 807
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:20:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1021 Acetylglucosaminyltran 100.0 6.9E-66 1.5E-70 542.1 24.9 369 39-447 70-459 (464)
2 PF03016 Exostosin: Exostosin 100.0 7.4E-54 1.6E-58 425.9 18.9 286 38-395 1-302 (302)
3 KOG2264 Exostosin EXT1L [Signa 99.9 1.9E-25 4.2E-30 228.4 15.3 333 42-444 159-527 (907)
4 KOG1022 Acetylglucosaminyltran 99.4 1.2E-12 2.6E-17 134.8 13.8 246 102-408 128-383 (691)
5 PF00852 Glyco_transf_10: Glyc 95.4 0.027 5.9E-07 57.9 5.8 151 215-396 141-296 (349)
6 cd03820 GT1_amsD_like This fam 95.0 0.027 5.9E-07 54.7 4.4 95 313-417 244-340 (348)
7 cd03814 GT1_like_2 This family 95.0 0.028 6E-07 55.6 4.4 94 312-416 257-352 (364)
8 cd03794 GT1_wbuB_like This fam 94.5 0.034 7.5E-07 54.9 3.9 94 312-417 285-387 (394)
9 PLN02871 UDP-sulfoquinovose:DA 94.5 0.23 4.9E-06 52.7 10.2 95 313-419 323-423 (465)
10 PF00534 Glycos_transf_1: Glyc 93.8 0.028 6E-07 50.5 1.3 86 312-408 83-170 (172)
11 cd03801 GT1_YqgM_like This fam 93.7 0.078 1.7E-06 51.5 4.5 95 312-417 266-363 (374)
12 cd03822 GT1_ecORF704_like This 93.6 0.084 1.8E-06 52.2 4.5 93 313-417 259-355 (366)
13 cd03809 GT1_mtfB_like This fam 93.2 0.091 2E-06 52.0 4.0 94 312-418 263-358 (365)
14 PRK09814 beta-1,6-galactofuran 93.1 0.077 1.7E-06 53.8 3.5 88 312-415 217-317 (333)
15 cd03807 GT1_WbnK_like This fam 93.0 0.088 1.9E-06 51.5 3.5 93 313-418 260-355 (365)
16 TIGR03088 stp2 sugar transfera 92.5 0.53 1.1E-05 47.8 8.6 93 313-418 264-361 (374)
17 cd03806 GT1_ALG11_like This fa 92.2 0.93 2E-05 47.6 10.2 99 312-417 315-414 (419)
18 cd03808 GT1_cap1E_like This fa 92.0 0.21 4.5E-06 48.7 4.7 94 312-416 254-350 (359)
19 TIGR03449 mycothiol_MshA UDP-N 91.8 0.2 4.3E-06 51.6 4.6 94 312-418 293-390 (405)
20 cd04962 GT1_like_5 This family 91.8 0.21 4.5E-06 50.3 4.6 92 313-417 262-358 (371)
21 PRK15427 colanic acid biosynth 91.8 1 2.3E-05 47.0 10.0 92 312-417 289-393 (406)
22 cd03819 GT1_WavL_like This fam 91.8 0.25 5.3E-06 49.2 5.1 93 312-416 254-352 (355)
23 cd03800 GT1_Sucrose_synthase T 91.4 0.17 3.8E-06 51.2 3.6 94 313-417 294-390 (398)
24 cd04951 GT1_WbdM_like This fam 90.6 0.27 5.9E-06 48.8 4.1 92 313-417 254-348 (360)
25 cd03821 GT1_Bme6_like This fam 90.4 0.28 6.1E-06 48.2 3.9 92 313-417 273-367 (375)
26 cd03823 GT1_ExpE7_like This fa 89.9 0.44 9.6E-06 46.7 4.8 88 312-410 253-343 (359)
27 TIGR02149 glgA_Coryne glycogen 89.6 0.43 9.2E-06 48.5 4.5 94 312-418 271-375 (388)
28 cd05844 GT1_like_7 Glycosyltra 89.5 0.45 9.7E-06 47.7 4.6 92 313-418 256-359 (367)
29 cd03818 GT1_ExpC_like This fam 89.4 0.43 9.4E-06 49.2 4.5 93 312-417 291-388 (396)
30 cd03811 GT1_WabH_like This fam 89.2 0.69 1.5E-05 44.7 5.5 79 314-405 256-341 (353)
31 cd03798 GT1_wlbH_like This fam 89.2 0.27 5.9E-06 48.0 2.7 94 313-417 270-364 (377)
32 cd03817 GT1_UGDG_like This fam 89.0 0.8 1.7E-05 45.0 5.9 93 312-414 269-361 (374)
33 cd03799 GT1_amsK_like This is 88.8 0.72 1.6E-05 45.6 5.4 93 312-417 246-349 (355)
34 cd03825 GT1_wcfI_like This fam 88.4 0.85 1.8E-05 45.3 5.7 93 313-416 256-351 (365)
35 PRK15484 lipopolysaccharide 1, 88.1 2.5 5.4E-05 43.6 9.1 94 312-418 267-366 (380)
36 PRK00654 glgA glycogen synthas 87.4 2.9 6.3E-05 44.4 9.3 92 315-418 350-451 (466)
37 PF13524 Glyco_trans_1_2: Glyc 87.1 0.93 2E-05 36.5 4.2 71 334-416 11-83 (92)
38 TIGR02095 glgA glycogen/starch 86.6 3.1 6.8E-05 44.1 9.0 90 314-418 358-461 (473)
39 cd04949 GT1_gtfA_like This fam 86.2 0.69 1.5E-05 46.8 3.6 92 313-416 270-365 (372)
40 cd03804 GT1_wbaZ_like This fam 85.4 0.51 1.1E-05 47.5 2.2 61 312-382 252-314 (351)
41 PRK14098 glycogen synthase; Pr 84.9 4.3 9.3E-05 43.7 9.1 97 313-418 373-474 (489)
42 TIGR03087 stp1 sugar transfera 84.8 1.1 2.4E-05 46.2 4.4 91 314-418 290-385 (397)
43 cd04955 GT1_like_6 This family 84.2 1.4 3E-05 43.8 4.7 91 313-417 259-352 (363)
44 cd03795 GT1_like_4 This family 83.8 1.8 3.9E-05 42.9 5.3 93 313-416 255-353 (357)
45 cd03802 GT1_AviGT4_like This f 83.5 1.7 3.7E-05 42.7 5.0 41 313-355 235-277 (335)
46 cd03805 GT1_ALG2_like This fam 83.4 1.6 3.4E-05 44.4 4.7 93 313-417 291-386 (392)
47 cd03816 GT1_ALG1_like This fam 83.3 5.2 0.00011 41.8 8.7 87 312-411 305-399 (415)
48 cd03792 GT1_Trehalose_phosphor 83.2 1.4 3E-05 44.9 4.3 93 312-418 264-360 (372)
49 KOG2619 Fucosyltransferase [Ca 82.1 6.1 0.00013 41.0 8.4 154 216-401 163-322 (372)
50 PHA01630 putative group 1 glyc 82.0 1.5 3.3E-05 44.6 4.0 41 313-354 201-241 (331)
51 PLN02949 transferase, transfer 79.1 6.5 0.00014 42.1 7.8 98 312-418 345-445 (463)
52 TIGR02472 sucr_P_syn_N sucrose 78.2 2.3 5E-05 44.8 4.0 92 314-418 329-429 (439)
53 cd03791 GT1_Glycogen_synthase_ 78.2 10 0.00022 40.0 8.9 82 314-408 363-457 (476)
54 cd03813 GT1_like_3 This family 77.1 2.4 5.2E-05 45.2 3.8 95 312-416 361-463 (475)
55 PRK10307 putative glycosyl tra 76.6 6 0.00013 40.9 6.5 96 312-418 294-396 (412)
56 cd03812 GT1_CapH_like This fam 74.0 3.7 8E-05 40.7 4.0 42 312-354 257-298 (358)
57 PRK14099 glycogen synthase; Pr 73.3 5.9 0.00013 42.6 5.6 90 314-418 361-467 (485)
58 TIGR02468 sucrsPsyn_pln sucros 72.6 3.4 7.5E-05 48.3 3.7 91 314-418 560-659 (1050)
59 PF06692 MNSV_P7B: Melon necro 70.6 4.3 9.2E-05 30.2 2.5 24 1-24 1-33 (61)
60 cd03796 GT1_PIG-A_like This fa 70.6 3.6 7.9E-05 42.4 3.1 96 312-419 260-357 (398)
61 PRK09922 UDP-D-galactose:(gluc 69.9 2.6 5.7E-05 42.8 1.9 71 314-395 250-321 (359)
62 PRK15490 Vi polysaccharide bio 69.5 19 0.00041 39.6 8.3 41 313-354 464-504 (578)
63 cd01635 Glycosyltransferase_GT 68.2 5 0.00011 36.4 3.2 42 312-354 172-213 (229)
64 cd03793 GT1_Glycogen_synthase_ 67.9 4.9 0.00011 44.1 3.5 117 313-436 466-588 (590)
65 PLN02939 transferase, transfer 66.6 18 0.00039 42.1 7.8 91 316-418 851-955 (977)
66 TIGR02918 accessory Sec system 66.5 47 0.001 35.9 10.7 91 314-416 385-486 (500)
67 KOG1387 Glycosyltransferase [C 64.3 63 0.0014 33.5 10.2 93 313-411 348-440 (465)
68 cd04946 GT1_AmsK_like This fam 63.4 12 0.00026 39.0 5.3 88 314-416 301-398 (407)
69 TIGR01133 murG undecaprenyldip 60.3 13 0.00029 37.0 4.8 85 314-409 243-334 (348)
70 PLN02605 monogalactosyldiacylg 58.4 9.8 0.00021 39.2 3.6 82 314-409 275-361 (382)
71 TIGR02470 sucr_synth sucrose s 58.0 13 0.00027 42.5 4.6 85 323-420 645-738 (784)
72 PHA01633 putative glycosyl tra 55.2 9.2 0.0002 39.2 2.7 41 313-354 215-255 (335)
73 cd03785 GT1_MurG MurG is an N- 54.5 24 0.00052 35.1 5.6 88 313-410 244-338 (350)
74 PRK05749 3-deoxy-D-manno-octul 53.1 22 0.00047 37.0 5.1 106 313-444 311-422 (425)
75 cd04950 GT1_like_1 Glycosyltra 45.1 18 0.00038 37.1 2.9 40 313-353 265-309 (373)
76 PLN02316 synthase/transferase 42.8 30 0.00064 40.8 4.5 38 317-354 915-952 (1036)
77 cd03788 GT1_TPS Trehalose-6-Ph 41.0 17 0.00038 38.7 2.2 88 312-413 351-445 (460)
78 PRK10125 putative glycosyl tra 39.0 54 0.0012 34.2 5.5 64 313-390 298-363 (405)
79 PF00919 UPF0004: Uncharacteri 38.5 23 0.0005 29.5 2.1 32 93-125 11-43 (98)
80 PRK13608 diacylglycerol glucos 38.4 39 0.00084 35.0 4.3 86 314-412 266-354 (391)
81 PF13692 Glyco_trans_1_4: Glyc 38.3 21 0.00046 30.1 1.9 41 313-354 62-103 (135)
82 TIGR02400 trehalose_OtsA alpha 38.2 43 0.00094 35.7 4.7 83 312-409 346-436 (456)
83 PRK00025 lpxB lipid-A-disaccha 38.1 25 0.00054 35.7 2.7 36 314-355 254-289 (380)
84 PLN00142 sucrose synthase 37.9 40 0.00086 38.8 4.5 91 317-420 661-761 (815)
85 PRK15179 Vi polysaccharide bio 37.4 1E+02 0.0022 34.9 7.6 40 314-354 584-623 (694)
86 smart00672 CAP10 Putative lipo 36.5 1.4E+02 0.0031 29.3 7.7 93 246-354 79-177 (256)
87 TIGR00236 wecB UDP-N-acetylglu 35.4 2.2E+02 0.0047 28.7 9.2 37 312-354 265-301 (365)
88 PLN02275 transferase, transfer 35.2 1.1E+02 0.0023 31.3 6.9 41 312-354 297-341 (371)
89 PRK13609 diacylglycerol glucos 32.8 70 0.0015 32.5 5.1 83 314-409 266-351 (380)
90 PRK00726 murG undecaprenyldiph 30.6 76 0.0016 31.9 4.8 87 313-408 244-336 (357)
91 PF15183 MRAP: Melanocortin-2 30.0 77 0.0017 25.8 3.6 37 14-50 51-87 (90)
92 PF06258 Mito_fiss_Elm1: Mitoc 26.0 2.6E+02 0.0057 28.3 7.7 39 312-354 219-257 (311)
93 PRK15006 thiosulfate reductase 24.0 64 0.0014 31.8 2.8 49 8-59 33-81 (261)
94 KOG3185 Translation initiation 21.8 56 0.0012 30.8 1.8 32 321-352 20-51 (245)
No 1
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=6.9e-66 Score=542.15 Aligned_cols=369 Identities=34% Similarity=0.551 Sum_probs=319.2
Q ss_pred CCCCeEEEeCCCccccHHHhhccCCCC-CCCC---CCcccccCCCCCCCCC--------CCccccccCCccchHHHHHhh
Q 012984 39 CTNRWIYVRWLPSRFNFDLLSNCSAYP-LFGD---FCSYLQNHGLGPKTHN--------DSHSWYRTDPLLLELIFHRRI 106 (452)
Q Consensus 39 c~g~~IyvYdLP~~fn~~~l~~c~~~~-~~~~---~C~~~~n~g~g~~~~~--------~~~~w~~t~~y~~E~~fhe~L 106 (452)
|.+..||||+||+.||.++++.|.... .|.. +|.+..|.++++.... +..+|+.|+||++|.+||++|
T Consensus 70 ~~~~~v~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~E~~~~~~~ 149 (464)
T KOG1021|consen 70 CAGASVYVYNLPSGFDVSLLLFHKQIPTSPNNKKFMCSYKLNEKRGKVYVYHEGNKPLFHTPSWCLTDQYASEGIFHNRM 149 (464)
T ss_pred ccCcceeeeccchhhhhhhhccCccccccCcchhhhhhhhhhcccCceEEecCCCCccccCCCcccccchhHHHHHHHHH
Confidence 899999999999999999999998764 4555 8998877777654422 235899999999999999999
Q ss_pred --hcCCccCCCCCCccEEEEcccccccccccccCCC----chhhhHHhHHHHHHHhhCCCcccccccCCCCeEEEecCCC
Q 012984 107 --LEYPCLTQDPASANAVYVPYYAALDGLKYLYGSE----TNFSRRHGLELYNFLRYDDQPEIWDRFAGHDHFLVMARPA 180 (452)
Q Consensus 107 --~~s~~rT~dP~eAd~FyVP~y~~l~~~~~~~~~~----~~~~~~l~~~l~~~L~~~p~~~~WnR~gGrDH~~v~~~~~ 180 (452)
..++|||.||+|||+||||||++++..++.+.++ ...++.++..++.|++++| ||||++|+|||||++|++
T Consensus 150 ~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p---~W~Rs~G~DH~~v~~~~~ 226 (464)
T KOG1021|consen 150 LRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDERVNAILRSILQDYIVALLSKQP---YWNRSSGRDHFFVACHDW 226 (464)
T ss_pred hcccCceecCChhhCcEEEEcceeeEehhhhcccCCcccchHHHHHHHHHHHHHHhcCc---hhhccCCCceEEEeCCcc
Confidence 4789999999999999999999999877755552 2356788899999999999 999999999999999999
Q ss_pred cccCCCCCCCCCCccccccccccccceeeeeecCCCCCCCccccCCCCccCCCCchhhhhhhcccCCCCCceEEEEecCC
Q 012984 181 WEFSQPLHVDPPVWGTSFLEVPEFYNVTALLPEGRTWPWQEQAVPYPTSYHPSSLNLFESWVKRVRNSRRSTLMLFAGGG 260 (452)
Q Consensus 181 w~~~~~~~~~~d~~g~~~~~~p~~~n~~~l~~e~~~w~~~Dv~iP~~~~~~P~~~~~i~~w~~~~~~~~R~~L~~F~G~~ 260 (452)
|++.+.. + |+++...++++.|.+.+..+..+|. +|++|||++.+||....+. .|+......+|++|++|+|+.
T Consensus 227 ~~~~~~~----~-~~~~~~~i~~~~n~a~ls~~~~~~~-~dv~iP~~~~~~~~~~~~~-~~~~~~~~~~R~~L~~F~G~~ 299 (464)
T KOG1021|consen 227 GDFRRRS----D-WGASISLIPEFCNGALLSLEFFPWN-KDVAIPYPTIPHPLSPPEN-SWQGGVPFSNRPILAFFAGAP 299 (464)
T ss_pred hheeecc----c-hhhHHHHHHhhCCcceeecccccCC-CcccCCCccCcCccCcccc-ccccCCCCCCCceEEEEeccc
Confidence 9988863 3 8998888999999888888887876 9999999999999988777 788888889999999999985
Q ss_pred CCCCCchHHHHHHHHHhhcCCCchhhhcCCCCcccceeEEeccCCCccc-CCcchhhcccccceEEecCCCCCCCCchHH
Q 012984 261 GVGANPNIRRSIRNECKSNHSSEVVAAAGGGGHFNKVCDIVDCSNGICE-HDPIRFMRPMLRATFCLQPPGDTPTRRSTF 339 (452)
Q Consensus 261 ~~~~~~~iR~~L~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~y~~~m~~S~FCL~P~Gd~~ssrrl~ 339 (452)
.++.||+.|+++|+ + .++ .|.+++|..+.+. .++..|.+.|++|+|||||+||+++++|+|
T Consensus 300 ---~~~~iR~~L~~~~~-~-~~~-------------~~~~~~~~~g~~~~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~f 361 (464)
T KOG1021|consen 300 ---AGGQIRSILLDLWK-K-DPD-------------TEVFVNCPRGKVSCDRPLNYMEGMQDSKFCLCPPGDTPTSPRLF 361 (464)
T ss_pred ---cCCcHHHHHHHHhh-c-CcC-------------ccccccCCCCccccCCcchHHHHhhcCeEEECCCCCCcccHhHH
Confidence 37799999999999 5 454 4677788666332 678999999999999999999999999999
Q ss_pred HHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccH-HHHHcCCCHHHHHHHHHHHHh-hcceeeEe
Q 012984 340 DGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKI-VDVLMSIPNAKVRRMRERVIE-LMPGVIYR 417 (452)
Q Consensus 340 DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l-~~iL~~I~~~~i~~Mq~~l~~-v~~~f~Y~ 417 (452)
|||++|||||||+|+. |++|+.|-| |++|||+|++++++ ++ .++|.+|+.+++.+||+++++ +.++|.+.
T Consensus 362 dai~~gCvPViisd~~---~lpf~~~~d-~~~fSV~v~~~~v~----~~~~~iL~~i~~~~~~~m~~~v~~~v~r~~~~~ 433 (464)
T KOG1021|consen 362 DAIVSGCVPVIISDGI---QLPFGDVLD-WTEFSVFVPEKDVP----ELIKNILLSIPEEEVLRMRENVIRLVPRHFLKK 433 (464)
T ss_pred HHHHhCCccEEEcCCc---ccCcCCCcc-ceEEEEEEEHHHhh----hHHHHHHHhcCHHHHHHHHHHHHHHHHhhEEeC
Confidence 9999999999999994 566666669 99999999999999 66 999999999999999999995 88888888
Q ss_pred cCCcccccCCcccHHHHHHHHHHHHhhhhh
Q 012984 418 RHESTLGLKAKKDAFDIAIEGTLERIRSKL 447 (452)
Q Consensus 418 ~p~~~~~~~~~~DAf~~~~~~l~~Ri~~~~ 447 (452)
.+ ++ ...+|||+++++++..|+...+
T Consensus 434 ~~-~~---~~~~da~~~~~~~v~~r~~~~~ 459 (464)
T KOG1021|consen 434 PP-GP---PKRGDAFHMILHSLWRRLHKLR 459 (464)
T ss_pred CC-CC---CCcchhHHHHHhhhhhcccccc
Confidence 74 21 2338999999999999888765
No 2
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=7.4e-54 Score=425.89 Aligned_cols=286 Identities=29% Similarity=0.523 Sum_probs=215.5
Q ss_pred CCCCCeEEEeCCCccccHHHhhccCCCCCCCCCCcccccCCCCCCCCCCCccccccCCccchHHHHHhhhcCCccCCCCC
Q 012984 38 DCTNRWIYVRWLPSRFNFDLLSNCSAYPLFGDFCSYLQNHGLGPKTHNDSHSWYRTDPLLLELIFHRRILEYPCLTQDPA 117 (452)
Q Consensus 38 ~c~g~~IyvYdLP~~fn~~~l~~c~~~~~~~~~C~~~~n~g~g~~~~~~~~~w~~t~~y~~E~~fhe~L~~s~~rT~dP~ 117 (452)
+|.+++|||||||++||.+++..... ....|..+++|++|.+||++|++|+++|.||+
T Consensus 1 ~~~~lkVYVY~lp~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~ 58 (302)
T PF03016_consen 1 SHRGLKVYVYPLPPKFNKDLLDPRED----------------------EQCSWYETSQYALEVILHEALLNSPFRTDDPE 58 (302)
T ss_pred CCCCCEEEEEeCCccccccceecccc----------------------ccCCCcccccchHHHHHHHHHHhCCcEeCCHH
Confidence 58999999999999999998822110 12456678899999999999999999999999
Q ss_pred CccEEEEcccccccccccccC-CCc-hhhhHHhHHHHHHHhhCCCcccccccCCCCeEEEecCCCcccCCCCCCCCCCcc
Q 012984 118 SANAVYVPYYAALDGLKYLYG-SET-NFSRRHGLELYNFLRYDDQPEIWDRFAGHDHFLVMARPAWEFSQPLHVDPPVWG 195 (452)
Q Consensus 118 eAd~FyVP~y~~l~~~~~~~~-~~~-~~~~~l~~~l~~~L~~~p~~~~WnR~gGrDH~~v~~~~~w~~~~~~~~~~d~~g 195 (452)
|||+||||++.++.. .+.++ .+. .....+...+..+++++| ||||++|+||||+++|+.|.+..
T Consensus 59 eAdlF~vP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~w~r~~G~dH~~~~~~~~g~~~~---------- 124 (302)
T PF03016_consen 59 EADLFFVPFYSSCYF-HHWWGSPNSGADRDSLSDALRHLLASYP---YWNRSGGRDHFFVNSHDRGGCSF---------- 124 (302)
T ss_pred HCeEEEEEccccccc-ccccCCccchhhHHHHHHHHHHHHhcCc---hhhccCCCCeEEEeccccccccc----------
Confidence 999999999999864 11122 211 234566677788889999 99999999999999987333221
Q ss_pred ccccccccccceeeeee-------cCCCCCCCccccCCCCccCCCCchhhhhhhcccCCCCCceEEEEecCCCCC---CC
Q 012984 196 TSFLEVPEFYNVTALLP-------EGRTWPWQEQAVPYPTSYHPSSLNLFESWVKRVRNSRRSTLMLFAGGGGVG---AN 265 (452)
Q Consensus 196 ~~~~~~p~~~n~~~l~~-------e~~~w~~~Dv~iP~~~~~~P~~~~~i~~w~~~~~~~~R~~L~~F~G~~~~~---~~ 265 (452)
...+.+.+.+..++ ...+++++||++|+... +........+ ....+.+|++|++|+|..... ++
T Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~P~~~~--~~~~~~~~~~-~~~~~~~R~~l~~f~g~~~~~~~~~~ 198 (302)
T PF03016_consen 125 ---DRNPRLMNNSIRAVVAFSSFSSSCFRPGFDIVIPPFVP--PSSLPDWRPW-PQRPPARRPYLLFFAGTIRPSSNDYS 198 (302)
T ss_pred ---cccHhhhccchhheeccCCCCcCcccCCCCeecccccc--ccccCCcccc-ccCCccCCceEEEEeeeccccccccc
Confidence 11122222222211 23456799999997542 2221111111 345678999999999998875 45
Q ss_pred chHHHHHHHHHhhcCCCchhhhcCCCCcccceeEEeccCCCcccCCcchhhcccccceEEecCCCCCCCCchHHHHHhhC
Q 012984 266 PNIRRSIRNECKSNHSSEVVAAAGGGGHFNKVCDIVDCSNGICEHDPIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAG 345 (452)
Q Consensus 266 ~~iR~~L~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~G 345 (452)
+.+|+.|++.|+ + .++. .|.. . ...+ .+..+|.+.|++|||||+|+|++++++||+|||++|
T Consensus 199 ~~~r~~l~~~~~-~-~~~~------------~~~~--~-~~~~-~~~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~G 260 (302)
T PF03016_consen 199 GGVRQRLLDECK-S-DPDF------------RCSD--G-SETC-PSPSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAG 260 (302)
T ss_pred hhhhhHHHHhcc-c-CCcc------------eeee--c-cccc-ccchHHHHhcccCeEEEECCCCCcccchHHHHhhhc
Confidence 799999999998 5 4541 1211 1 1122 456779999999999999999999999999999999
Q ss_pred ceeEEeecCcccccccccCCC----CCCCceEEEeecCccccccccHHHHHcCC
Q 012984 346 CIPVFFEEQSAKSQYVWHLPG----EMYDEFSVFIPKEDVVFKGLKIVDVLMSI 395 (452)
Q Consensus 346 CIPVii~d~~~~~qy~w~LPf----D~w~~fsV~I~e~dv~~~~~~l~~iL~~I 395 (452)
||||||+|+ ++||| | |++|||+|++++++ +|+++|++|
T Consensus 261 cIPVii~d~-------~~lPf~~~ld-w~~fsv~v~~~~~~----~l~~iL~~i 302 (302)
T PF03016_consen 261 CIPVIISDD-------YVLPFEDVLD-WSRFSVRVPEADLP----ELPEILRSI 302 (302)
T ss_pred eeeEEecCc-------ccCCcccccC-HHHEEEEECHHHHH----HHHHHHhcC
Confidence 999999998 48999 8 99999999999999 999999987
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-25 Score=228.44 Aligned_cols=333 Identities=17% Similarity=0.189 Sum_probs=220.4
Q ss_pred CeEEEeCCCccccH-HHhhccCCCCCCC-CCCcccccCCCCCCCCCCCccccccCCcc----chHHHHHhhhcCCccCCC
Q 012984 42 RWIYVRWLPSRFNF-DLLSNCSAYPLFG-DFCSYLQNHGLGPKTHNDSHSWYRTDPLL----LELIFHRRILEYPCLTQD 115 (452)
Q Consensus 42 ~~IyvYdLP~~fn~-~~l~~c~~~~~~~-~~C~~~~n~g~g~~~~~~~~~w~~t~~y~----~E~~fhe~L~~s~~rT~d 115 (452)
.....--+|.+.+. .+...|..+++++ ++|+.+ +||+.+.+.+..- +..+. +-..|.+-+....+.|+|
T Consensus 159 ~sllP~~~pr~l~pp~~~~~c~lhncfdySRCslt--SgfPVYvyd~D~~---~~G~~~d~~lk~~fq~t~~~n~~~ve~ 233 (907)
T KOG2264|consen 159 FSLLPLQIPRELEPPSQISPCQLHNCFDYSRCSLT--SGFPVYVYDSDII---TSGQSEDEWLKQVFQETIPNNVYLVET 233 (907)
T ss_pred cccCcccCcccCCCccccCcccchhcccccccccc--CCceeEEecccee---ecccchHHHHHHHHHHhcccceeEeeC
Confidence 33334445555443 2556788888877 899987 7999888554311 01112 234566677788999999
Q ss_pred CCCccEEEEcccccccccccccCCCchhhhHHhHHHHHHHhhCCCcccccccCCCCeEEEecCCCcccCCCCCCCCCCcc
Q 012984 116 PASANAVYVPYYAALDGLKYLYGSETNFSRRHGLELYNFLRYDDQPEIWDRFAGHDHFLVMARPAWEFSQPLHVDPPVWG 195 (452)
Q Consensus 116 P~eAd~FyVP~y~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~~p~~~~WnR~gGrDH~~v~~~~~w~~~~~~~~~~d~~g 195 (452)
|+.||++.+-+..- ..|-+.. ..++.+ |-+.| +| |++|+||++++.. ++. | -.
T Consensus 234 pd~ACiyi~lvge~-------q~P~~l~----p~elek-lyslp---~w-~~dg~Nhvl~Nl~------r~s----~-~~ 286 (907)
T KOG2264|consen 234 PDKACIYIHLVGEI-------QSPVVLT----PAELEK-LYSLP---HW-RTDGFNHVLFNLG------RPS----D-TQ 286 (907)
T ss_pred CCccEEEEEEeccc-------cCCCcCC----hHhhhh-hhcCc---cc-cCCCcceEEEEcc------Ccc----c-cc
Confidence 99999987755331 1221111 223333 78899 99 8999999999763 221 1 12
Q ss_pred ccccccccccceeeee--ec-CCCCCCCccccCCCCccCCCCchhhhhhh--cccCCCCCceEEEEecCCCCCCC--chH
Q 012984 196 TSFLEVPEFYNVTALL--PE-GRTWPWQEQAVPYPTSYHPSSLNLFESWV--KRVRNSRRSTLMLFAGGGGVGAN--PNI 268 (452)
Q Consensus 196 ~~~~~~p~~~n~~~l~--~e-~~~w~~~Dv~iP~~~~~~P~~~~~i~~w~--~~~~~~~R~~L~~F~G~~~~~~~--~~i 268 (452)
+-+.+....+ ++.+. .+ -+.++++|++||+. -|+.... .|+ ...-+.+|++|+.|+|.+.+..+ ...
T Consensus 287 n~lyn~~t~r-aivvQssf~~~q~RpgfDl~V~pv--~h~~~e~---~~~e~~p~vP~~RkyL~t~qgki~~~~ssLn~~ 360 (907)
T KOG2264|consen 287 NLLYNFQTGR-AIVVQSSFYTVQIRPGFDLPVDPV--NHIAVEK---NFVELTPLVPFQRKYLITLQGKIESDNSSLNEF 360 (907)
T ss_pred cceeEeccCc-eEEEeecceeeeeccCCCcccCcc--cccccCc---cceecCcccchhhheeEEEEeeecccccccchh
Confidence 3233322212 22111 11 15688999999864 3555432 343 34568899999999998887532 245
Q ss_pred HHHHHHHHhhcCCCchhhhcCCCCcccceeEEeccC-----CC--------cccCCcchhhcccccceEEec-CCCCCCC
Q 012984 269 RRSIRNECKSNHSSEVVAAAGGGGHFNKVCDIVDCS-----NG--------ICEHDPIRFMRPMLRATFCLQ-PPGDTPT 334 (452)
Q Consensus 269 R~~L~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~~--------~c~~~~~~y~~~m~~S~FCL~-P~Gd~~s 334 (452)
+.-..+... + +. .+ ..++.....+.|. .. .| ....+..+++..|||||+ |+||+--
T Consensus 361 ~aF~~e~~a-d--p~----~~--a~qds~i~qv~c~~t~k~Qe~~SLpewalc-g~~~~RrqLlk~STF~lilpp~d~rv 430 (907)
T KOG2264|consen 361 SAFSEELSA-D--PS----RR--AVQDSPIVQVKCSFTCKNQENCSLPEWALC-GERERRRQLLKSSTFCLILPPGDPRV 430 (907)
T ss_pred hhhHHHhcc-C--Cc----cc--ccccCceEEEEEeeccccCCCCCcchhhhc-cchHHHHHHhccceeEEEecCCCcch
Confidence 554444333 2 21 11 1111122333332 11 24 234567899999999996 8898743
Q ss_pred C-----chHHHHHhhCceeEEeecCcccccccccCCC----CCCCceEEEeecCccccccccHHHHHcCCCHHHHHHHHH
Q 012984 335 R-----RSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG----EMYDEFSVFIPKEDVVFKGLKIVDVLMSIPNAKVRRMRE 405 (452)
Q Consensus 335 s-----rrl~DAi~~GCIPVii~d~~~~~qy~w~LPf----D~w~~fsV~I~e~dv~~~~~~l~~iL~~I~~~~i~~Mq~ 405 (452)
. .|+++|+..||||||+++.. .||| | |++.++++|...+. +++.+|+++...++.+||+
T Consensus 431 ~S~~~~~r~~eaL~~GavPviLg~~~-------~LPyqd~id-Wrraal~lPkaR~t----E~HFllrs~~dsDll~mRR 498 (907)
T KOG2264|consen 431 ISEMFFQRFLEALQLGAVPVILGNSQ-------LLPYQDLID-WRRAALRLPKARLT----EAHFLLRSFEDSDLLEMRR 498 (907)
T ss_pred hhHHHHHHHHHHHhcCCeeEEecccc-------ccchHHHHH-HHHHhhhCCccccc----hHHHHHHhcchhhHHHHHh
Confidence 2 67999999999999999986 8999 8 99999999999999 9999999999999999999
Q ss_pred HHHhhcceeeEecCCcccccCCcccHHHHHHHHHHHHhh
Q 012984 406 RVIELMPGVIYRRHESTLGLKAKKDAFDIAIEGTLERIR 444 (452)
Q Consensus 406 ~l~~v~~~f~Y~~p~~~~~~~~~~DAf~~~~~~l~~Ri~ 444 (452)
+++ |.|....+. ..-.++++++.|+.|+.
T Consensus 499 qGR-----l~wEtYls~-----~~~~~~tvlA~lR~rlq 527 (907)
T KOG2264|consen 499 QGR-----LFWETYLSD-----RHLLARTVLAALRYRLQ 527 (907)
T ss_pred hhh-----hhHHHHhhH-----HHHHHHHHHHHHHHhhC
Confidence 995 888877543 24568899999988875
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.43 E-value=1.2e-12 Score=134.82 Aligned_cols=246 Identities=18% Similarity=0.138 Sum_probs=163.8
Q ss_pred HHHhhhcCCccCCCCCCccEEEEcccccccccccccCCCchhhhHHhHHHHHH-HhhCCCcccccccCCCCeEEEecCCC
Q 012984 102 FHRRILEYPCLTQDPASANAVYVPYYAALDGLKYLYGSETNFSRRHGLELYNF-LRYDDQPEIWDRFAGHDHFLVMARPA 180 (452)
Q Consensus 102 fhe~L~~s~~rT~dP~eAd~FyVP~y~~l~~~~~~~~~~~~~~~~l~~~l~~~-L~~~p~~~~WnR~gGrDH~~v~~~~~ 180 (452)
+-|....|.+.|.|+++||+| +|-..-+..+ .+..++.+- |.+.- .|. .|.+|..+..-|.
T Consensus 128 lleA~~~S~yyt~n~N~aclf-~Ps~d~lnQn------------~l~~kl~~~ala~l~---~wd--rg~nH~~fnmLpG 189 (691)
T KOG1022|consen 128 LLEAWHLSFYYTFNYNGACLF-MPSSDELNQN------------PLSWKLEKVALAKLL---VWD--RGVNHEGFNMLPG 189 (691)
T ss_pred HHHHHHhccceecCCCceEEE-ecchhhhccC------------cchHHHHHHHHhccc---chh--cccceeeEeeccC
Confidence 445667899999999999996 8876544332 122233222 44555 998 8999999987653
Q ss_pred cccCCCCCCCCCCccccccccccccceeeeeecCCC---CCCCccccCCCCccCCCCchhhhhhhcccCCCCCceEEEEe
Q 012984 181 WEFSQPLHVDPPVWGTSFLEVPEFYNVTALLPEGRT---WPWQEQAVPYPTSYHPSSLNLFESWVKRVRNSRRSTLMLFA 257 (452)
Q Consensus 181 w~~~~~~~~~~d~~g~~~~~~p~~~n~~~l~~e~~~---w~~~Dv~iP~~~~~~P~~~~~i~~w~~~~~~~~R~~L~~F~ 257 (452)
++ |+ +.+ .+.++.. ++.-..-...+ ++++||.||. +.|.... ++...+.+|.+++-=.
T Consensus 190 g~--------p~-ynt-aldv~~d-~a~~~gggf~tW~yr~g~dv~ipv---~Sp~~v~-----~~~~~~g~r~~~l~~~ 250 (691)
T KOG1022|consen 190 GD--------PT-YNT-ALDVGQD-EAWYSGGGFGTWKYRKGNDVYIPV---RSPGNVG-----RAFLYDGSRYRVLQDC 250 (691)
T ss_pred CC--------CC-ccc-cccCCcc-eeEEecCCcCcccccCCCcccccc---ccccccC-----ccccCCccceeeeecc
Confidence 22 22 222 2222221 11111112233 4589999994 4554211 2223355666554333
Q ss_pred cCCCCCCCchHHHHHHHHHhhcCCCchhhhcCCCCcccceeEEecc-CCCcccC-CcchhhcccccceEEecCCCCCCCC
Q 012984 258 GGGGVGANPNIRRSIRNECKSNHSSEVVAAAGGGGHFNKVCDIVDC-SNGICEH-DPIRFMRPMLRATFCLQPPGDTPTR 335 (452)
Q Consensus 258 G~~~~~~~~~iR~~L~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~c~~-~~~~y~~~m~~S~FCL~P~Gd~~ss 335 (452)
| .++...+|..|.++.. + ..+. ......|.-++- ..+.|++ -.-.|...+...+||+.-+|.+-+.
T Consensus 251 q---~n~~pr~r~~l~el~~-k-h~e~-------~l~l~~c~nlsl~~r~~~qhH~~~~yp~~l~~~~fc~~~R~~r~gq 318 (691)
T KOG1022|consen 251 Q---ENYGPRIRVSLIELLS-K-HEER-------ELELPFCLNLSLNSRGVRQHHFDVKYPSSLEFIGFCDGDRVTRGGQ 318 (691)
T ss_pred c---cccchHhHHhHHHHHh-h-ccce-------EEecchhccccccccchhhcccccccccccceeeeEeccccccCCc
Confidence 2 4567789999988876 4 3321 111223332221 1134432 2357999999999999999988888
Q ss_pred chHHHHHhhCceeEEeecCcccccccccCCC----CCCCceEEEeecCccccccccHHHHHcCCCHHHHHHHHHHHH
Q 012984 336 RSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG----EMYDEFSVFIPKEDVVFKGLKIVDVLMSIPNAKVRRMRERVI 408 (452)
Q Consensus 336 rrl~DAi~~GCIPVii~d~~~~~qy~w~LPf----D~w~~fsV~I~e~dv~~~~~~l~~iL~~I~~~~i~~Mq~~l~ 408 (452)
.-+.+-+.+||||||..|. +.||| | |...||.++|..+. ++.+.|++|+...+-+||.+..
T Consensus 319 ~~lv~~~~a~c~pvi~vd~-------y~lpf~~Vvd-w~~aSv~~~e~~~~----~v~~~l~~i~~~~i~sl~~r~~ 383 (691)
T KOG1022|consen 319 FHLVILGYASCAPVISVDI-------YLLPFLGVVD-WIVASVWCMEYYAG----KVMDALLNIETAGICSLQLRRI 383 (691)
T ss_pred cceehhhhcccceeeeeeh-------hhhhhhhhhh-ceeeeEEeehhhHH----HHHHHhhcchhcchhhhhhhhh
Confidence 8899999999999999998 48999 8 99999999999999 9999999999999999988754
No 5
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=95.35 E-value=0.027 Score=57.93 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=60.7
Q ss_pred CCCCCCccccCCCCccCCCCchhhhhhhcccCCCCCceEEEEecCCCCCCCchHHHHHHHHHhhcCCCchhhhcCCCCcc
Q 012984 215 RTWPWQEQAVPYPTSYHPSSLNLFESWVKRVRNSRRSTLMLFAGGGGVGANPNIRRSIRNECKSNHSSEVVAAAGGGGHF 294 (452)
Q Consensus 215 ~~w~~~Dv~iP~~~~~~P~~~~~i~~w~~~~~~~~R~~L~~F~G~~~~~~~~~iR~~L~~~~~~~~~~d~~~~~~~~~~~ 294 (452)
+++..-||.+||... .+........... ....+++-++.+.-+-+.. ..-|..+++.+. + .-.+
T Consensus 141 TYr~dSDi~~py~~~-~~~~~~~~~~~~~-~~~~~K~~~~~w~~Snc~~--~~~R~~~~~~L~-~-~~~v---------- 204 (349)
T PF00852_consen 141 TYRRDSDIPLPYGYF-SPRESPSEKDDLP-NILKKKTKLAAWIVSNCNP--HSGREEYVRELS-K-YIPV---------- 204 (349)
T ss_dssp ----------------------------------TSSEEEEE--S-S----H-HHHHHHHHHH-T-TS-E----------
T ss_pred ccccccccccccccc-ccccccccccccc-ccccCCCceEEEEeeCcCC--cccHHHHHHHHH-h-hcCe----------
Confidence 355568999998642 2211110000011 1123344444444333322 234999999998 5 2211
Q ss_pred cceeEEeccCCCcccCCcchhhcccccceEEecCC---CCCCCCchHHHHHhhCceeEEee--cCcccccccccCCCCCC
Q 012984 295 NKVCDIVDCSNGICEHDPIRFMRPMLRATFCLQPP---GDTPTRRSTFDGFLAGCIPVFFE--EQSAKSQYVWHLPGEMY 369 (452)
Q Consensus 295 ~~~~~~~~~~~~~c~~~~~~y~~~m~~S~FCL~P~---Gd~~ssrrl~DAi~~GCIPVii~--d~~~~~qy~w~LPfD~w 369 (452)
-.+-.|....+ .......+.+++-+|.|+.- -...-+--||+|+.+|||||+++ ... |.=.+|-+
T Consensus 205 ---d~yG~c~~~~~-~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~----~~~~~P~~-- 274 (349)
T PF00852_consen 205 ---DSYGKCGNNNP-CPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPN----YEEFAPPN-- 274 (349)
T ss_dssp ---EE-SSTT--SS-S--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TT----HHHHS-GG--
T ss_pred ---EccCCCCCCCC-cccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecc----cccCCCCC--
Confidence 11111211111 22345789999999999853 34455566999999999999999 432 11135543
Q ss_pred CceEEEeecCccccccccHHHHHcCCC
Q 012984 370 DEFSVFIPKEDVVFKGLKIVDVLMSIP 396 (452)
Q Consensus 370 ~~fsV~I~e~dv~~~~~~l~~iL~~I~ 396 (452)
+ +|..+|..+.. +|.+.|+.+.
T Consensus 275 -S---fI~~~df~s~~-~La~yl~~l~ 296 (349)
T PF00852_consen 275 -S---FIHVDDFKSPK-ELADYLKYLD 296 (349)
T ss_dssp -G---SEEGGGSSSHH-HHHHHHHHHH
T ss_pred -C---ccchhcCCCHH-HHHHHHHHHh
Confidence 2 45555554333 6777777663
No 6
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=95.01 E-value=0.027 Score=54.68 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=63.2
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
.+..+.|+++.+++.|.........++|||++|| |||.++.... ..++- + -....+.++..++. .+.+.|
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~-Pvi~~~~~~~---~~~~~-~-~~~~g~~~~~~~~~----~~~~~i 313 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGL-PVISFDCPTG---PSEII-E-DGVNGLLVPNGDVE----ALAEAL 313 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHHHcCC-CEEEecCCCc---hHhhh-c-cCcceEEeCCCCHH----HHHHHH
Confidence 5678899999999999765444456999999999 5566664210 00111 2 22456677777766 555555
Q ss_pred cCC--CHHHHHHHHHHHHhhcceeeEe
Q 012984 393 MSI--PNAKVRRMRERVIELMPGVIYR 417 (452)
Q Consensus 393 ~~I--~~~~i~~Mq~~l~~v~~~f~Y~ 417 (452)
..+ .++...+|.++..++...|-|.
T Consensus 314 ~~ll~~~~~~~~~~~~~~~~~~~~~~~ 340 (348)
T cd03820 314 LRLMEDEELRKRMGANARESAERFSIE 340 (348)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhCHH
Confidence 554 5788888998887777666553
No 7
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.97 E-value=0.028 Score=55.56 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=63.4
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDV 391 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~i 391 (452)
..+..+.|+.|.+++.|.+.......++|||++|| |||.++..... ++- . =....+.++..+.. .+.+.
T Consensus 257 ~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~~~----~~i-~-~~~~g~~~~~~~~~----~l~~~ 325 (364)
T cd03814 257 GEELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGGPA----DIV-T-DGENGLLVEPGDAE----AFAAA 325 (364)
T ss_pred HHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCCch----hhh-c-CCcceEEcCCCCHH----HHHHH
Confidence 35677899999999999877655667999999999 88888864210 110 1 12455666666664 34444
Q ss_pred HcCC--CHHHHHHHHHHHHhhcceeeE
Q 012984 392 LMSI--PNAKVRRMRERVIELMPGVIY 416 (452)
Q Consensus 392 L~~I--~~~~i~~Mq~~l~~v~~~f~Y 416 (452)
|..+ .++++.+|.++..+....+.|
T Consensus 326 i~~l~~~~~~~~~~~~~~~~~~~~~~~ 352 (364)
T cd03814 326 LAALLADPELRRRMAARARAEAERRSW 352 (364)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHhhcCH
Confidence 4433 477888999888876655555
No 8
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=94.54 E-value=0.034 Score=54.86 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=64.0
Q ss_pred cchhhcccccceEEecCCCCCCC-----CchHHHHHhhCceeEEeecCcccccccccCCC-CCCCceEEEeecCcccccc
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPT-----RRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG-EMYDEFSVFIPKEDVVFKG 385 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~s-----srrl~DAi~~GCIPVii~d~~~~~qy~w~LPf-D~w~~fsV~I~e~dv~~~~ 385 (452)
..++.+.|+.+.+++.|...+.. ...+.|||.+|| |||.++... ...+ . -....+.++..++.
T Consensus 285 ~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~------~~~~~~-~~~~g~~~~~~~~~--- 353 (394)
T cd03794 285 KEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGE------SAELVE-EAGAGLVVPPGDPE--- 353 (394)
T ss_pred hHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCC------chhhhc-cCCcceEeCCCCHH---
Confidence 35677899999999998775532 445899999997 888887642 1111 1 12456677776766
Q ss_pred ccHHHHHcCC--CHHHHHHHHHHHHhhcc-eeeEe
Q 012984 386 LKIVDVLMSI--PNAKVRRMRERVIELMP-GVIYR 417 (452)
Q Consensus 386 ~~l~~iL~~I--~~~~i~~Mq~~l~~v~~-~f~Y~ 417 (452)
.+.+.|..+ .+++..+|.++..+... +|.|.
T Consensus 354 -~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 354 -ALAAAILELLDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred -HHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHH
Confidence 666666555 67888888888776544 55553
No 9
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=94.50 E-value=0.23 Score=52.73 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=67.7
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CC--CCceEEEeecCccccccccH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EM--YDEFSVFIPKEDVVFKGLKI 388 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~--w~~fsV~I~e~dv~~~~~~l 388 (452)
.+..+.|+.+..++.|.........++|||++| +|||.++.. ..+- ++ ..+..+.++..|.. .+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~g-------g~~eiv~~~~~~~~G~lv~~~d~~----~l 390 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAG-------GIPDIIPPDQEGKTGFLYTPGDVD----DC 390 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCC-------CcHhhhhcCCCCCceEEeCCCCHH----HH
Confidence 567889999999999987655556699999999 899998753 1221 10 14567777777776 55
Q ss_pred HHHHcCC--CHHHHHHHHHHHHhhcceeeEecC
Q 012984 389 VDVLMSI--PNAKVRRMRERVIELMPGVIYRRH 419 (452)
Q Consensus 389 ~~iL~~I--~~~~i~~Mq~~l~~v~~~f~Y~~p 419 (452)
.+.|..+ .++...+|.++.++....|-|...
T Consensus 391 a~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~ 423 (465)
T PLN02871 391 VEKLETLLADPELRERMGAAAREEVEKWDWRAA 423 (465)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5554443 477888999998887777766543
No 10
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=93.80 E-value=0.028 Score=50.52 Aligned_cols=86 Identities=9% Similarity=0.184 Sum_probs=54.2
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDV 391 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~i 391 (452)
..++.+.++.|.+.++|.........+.|||.+|| |||.++..... ..+. + ..-.+.++..++. ++.+.
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~~~~~---e~~~-~--~~~g~~~~~~~~~----~l~~~ 151 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDIGGNN---EIIN-D--GVNGFLFDPNDIE----ELADA 151 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESSTHHH---HHSG-T--TTSEEEESTTSHH----HHHHH
T ss_pred ccccccccccceecccccccccccccccccccccc-ceeeccccCCc---eeec-c--ccceEEeCCCCHH----HHHHH
Confidence 45788999999999999887777778999999999 66777742110 0111 2 1124666666766 66666
Q ss_pred HcCCC--HHHHHHHHHHHH
Q 012984 392 LMSIP--NAKVRRMRERVI 408 (452)
Q Consensus 392 L~~I~--~~~i~~Mq~~l~ 408 (452)
+..+- ++....|.++.+
T Consensus 152 i~~~l~~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 152 IEKLLNDPELRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHhc
Confidence 66553 355666666654
No 11
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=93.74 E-value=0.078 Score=51.53 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=63.8
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDV 391 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~i 391 (452)
..++.+.|+.|.+.+.|.-.......++|||.+|| |||.++..... ++ .. -....+.++..+.. ++.+.
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~~~~~----~~-~~-~~~~g~~~~~~~~~----~l~~~ 334 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDVGGIP----EV-VE-DGETGLLVPPGDPE----ALAEA 334 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCCCChh----HH-hc-CCcceEEeCCCCHH----HHHHH
Confidence 36788999999999999765555556999999998 77777743110 11 12 24566777777666 66666
Q ss_pred HcCC--CHHHHHHHHHHHH-hhcceeeEe
Q 012984 392 LMSI--PNAKVRRMRERVI-ELMPGVIYR 417 (452)
Q Consensus 392 L~~I--~~~~i~~Mq~~l~-~v~~~f~Y~ 417 (452)
|..+ .++...+|.++.. .+...+.|+
T Consensus 335 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 335 ILRLLDDPELRRRLGEAARERVAERFSWD 363 (374)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHhcCHH
Confidence 6653 4567778888876 455555553
No 12
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=93.60 E-value=0.084 Score=52.24 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=63.7
Q ss_pred chhhcccccceEEecCCCCC--CCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDT--PTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVD 390 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~--~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~ 390 (452)
.+..+.|+.+.+++.|.... ..+..+.|||++|+ |||.+|.... +.-.+ ..-.+.++..++. .+.+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~~-----~~i~~--~~~g~~~~~~d~~----~~~~ 326 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGHA-----EEVLD--GGTGLLVPPGDPA----ALAE 326 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCCh-----heeee--CCCcEEEcCCCHH----HHHH
Confidence 46788999999999998766 55566999999999 9999886310 11112 2334566666655 5555
Q ss_pred HHcCC--CHHHHHHHHHHHHhhcceeeEe
Q 012984 391 VLMSI--PNAKVRRMRERVIELMPGVIYR 417 (452)
Q Consensus 391 iL~~I--~~~~i~~Mq~~l~~v~~~f~Y~ 417 (452)
.|..+ .+++..+|+++..+....+.|+
T Consensus 327 ~l~~l~~~~~~~~~~~~~~~~~~~~~s~~ 355 (366)
T cd03822 327 AIRRLLADPELAQALRARAREYARAMSWE 355 (366)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHhhCCHH
Confidence 55443 3567888999988777665554
No 13
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=93.18 E-value=0.091 Score=51.97 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=62.8
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDV 391 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~i 391 (452)
..+..+.|+.+.+++.|.-.......++|||++|+ |||.++.. ..+-- -.+..+.++..+.. .+.+.
T Consensus 263 ~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~-------~~~e~-~~~~~~~~~~~~~~----~~~~~ 329 (365)
T cd03809 263 DEELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS-------SLPEV-AGDAALYFDPLDPE----ALAAA 329 (365)
T ss_pred hhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC-------Cccce-ecCceeeeCCCCHH----HHHHH
Confidence 35677889999999998643333445999999997 78887753 12211 23445666666666 56666
Q ss_pred HcC-C-CHHHHHHHHHHHHhhcceeeEec
Q 012984 392 LMS-I-PNAKVRRMRERVIELMPGVIYRR 418 (452)
Q Consensus 392 L~~-I-~~~~i~~Mq~~l~~v~~~f~Y~~ 418 (452)
|.. + .++...+|.++.+++...+.|..
T Consensus 330 i~~l~~~~~~~~~~~~~~~~~~~~~sw~~ 358 (365)
T cd03809 330 IERLLEDPALREELRERGLARAKRFSWEK 358 (365)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhCCHHH
Confidence 555 2 46778888888877777776643
No 14
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=93.14 E-value=0.077 Score=53.82 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=61.6
Q ss_pred cchhhcccccceEEecCCCCC-----------CCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeec
Q 012984 312 PIRFMRPMLRATFCLQPPGDT-----------PTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPK 378 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~-----------~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e 378 (452)
+.+..+.|+. .|+|++.+++ ...-.++++|++|+ |||.++..+ ++- . =....+.++
T Consensus 217 ~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~-PVI~~~~~~-------~~~~V~-~~~~G~~v~- 285 (333)
T PRK09814 217 PEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGL-PVIVWSKAA-------IADFIV-ENGLGFVVD- 285 (333)
T ss_pred HHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCC-CEEECCCcc-------HHHHHH-hCCceEEeC-
Confidence 3455566665 8888887761 11233888888886 999988752 222 1 134555565
Q ss_pred CccccccccHHHHHcCCCHHHHHHHHHHHHhhcceee
Q 012984 379 EDVVFKGLKIVDVLMSIPNAKVRRMRERVIELMPGVI 415 (452)
Q Consensus 379 ~dv~~~~~~l~~iL~~I~~~~i~~Mq~~l~~v~~~f~ 415 (452)
++. ++.+.|..++++++.+|+++.+++.+.+.
T Consensus 286 -~~~----el~~~l~~~~~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 286 -SLE----ELPEIIDNITEEEYQEMVENVKKISKLLR 317 (333)
T ss_pred -CHH----HHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 455 78999999999999999999998876654
No 15
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=92.96 E-value=0.088 Score=51.53 Aligned_cols=93 Identities=9% Similarity=0.071 Sum_probs=59.6
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
.+..+.|+.+.+++.|.........+.|||.+|| |||.++... .+.- ..+..+.++..+.. .+.+.+
T Consensus 260 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~-------~~e~-~~~~g~~~~~~~~~----~l~~~i 326 (365)
T cd03807 260 SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD-------NAEL-VGDTGFLVPPGDPE----ALAEAI 326 (365)
T ss_pred ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC-------hHHH-hhcCCEEeCCCCHH----HHHHHH
Confidence 4567889999999999876555566999999996 888877531 2211 22345666666655 454444
Q ss_pred cCC--CHHHHHHHHHHHHh-hcceeeEec
Q 012984 393 MSI--PNAKVRRMRERVIE-LMPGVIYRR 418 (452)
Q Consensus 393 ~~I--~~~~i~~Mq~~l~~-v~~~f~Y~~ 418 (452)
..+ .+++..+|.++..+ +..+|.|..
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 355 (365)
T cd03807 327 EALLADPALRQALGEAARERIEENFSIEA 355 (365)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 433 24667777777665 345565543
No 16
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=92.52 E-value=0.53 Score=47.76 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=60.6
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKIVD 390 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l~~ 390 (452)
.+..+.|+.|.+++.|.-.......++|||++|+ |||.+|.. ..+- + -......++..|.. .+.+
T Consensus 264 ~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~-------g~~e~i~-~~~~g~~~~~~d~~----~la~ 330 (374)
T TIGR03088 264 DDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVG-------GNPELVQ-HGVTGALVPPGDAV----ALAR 330 (374)
T ss_pred CCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCC-------CcHHHhc-CCCceEEeCCCCHH----HHHH
Confidence 4567888899988888654444556999999996 99998863 2222 2 23456677777766 5555
Q ss_pred HHcCC--CHHHHHHHHHHHHhh-cceeeEec
Q 012984 391 VLMSI--PNAKVRRMRERVIEL-MPGVIYRR 418 (452)
Q Consensus 391 iL~~I--~~~~i~~Mq~~l~~v-~~~f~Y~~ 418 (452)
.|..+ .+++..+|.++.++. ..+|.|..
T Consensus 331 ~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 331 ALQPYVSDPAARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 55443 355666776666553 35666543
No 17
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=92.20 E-value=0.93 Score=47.59 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=54.6
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC-CCCCceEEEeecCccccccccHHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG-EMYDEFSVFIPKEDVVFKGLKIVD 390 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf-D~w~~fsV~I~e~dv~~~~~~l~~ 390 (452)
..+..+.|+.|..++.|.=+..-...++|||++||+|| .++...... ....|. + .+-.+.++ +..+-...|.+
T Consensus 315 ~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvI-a~~~ggp~~-~iv~~~~~--g~~G~l~~--d~~~la~ai~~ 388 (419)
T cd03806 315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPL-AHASGGPLL-DIVVPWDG--GPTGFLAS--TAEEYAEAIEK 388 (419)
T ss_pred HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEE-EEcCCCCch-heeeccCC--CCceEEeC--CHHHHHHHHHH
Confidence 46778999999999987654433456899999999665 454211000 001121 1 11222221 33311112333
Q ss_pred HHcCCCHHHHHHHHHHHHhhcceeeEe
Q 012984 391 VLMSIPNAKVRRMRERVIELMPGVIYR 417 (452)
Q Consensus 391 iL~~I~~~~i~~Mq~~l~~v~~~f~Y~ 417 (452)
+|+ .++++...|+++-+++..+|.+.
T Consensus 389 ll~-~~~~~~~~~~~~~~~~~~~fs~~ 414 (419)
T cd03806 389 ILS-LSEEERLRIRRAARSSVKRFSDE 414 (419)
T ss_pred HHh-CCHHHHHHHHHHHHHHHHhhCHH
Confidence 333 36666667777777777777654
No 18
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=92.02 E-value=0.21 Score=48.68 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=59.8
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDV 391 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~i 391 (452)
..+..+.|+.|.+++.|.........++|||.+|+ |||.+|..... ++--+ ....+.++.++.. .+.+.
T Consensus 254 ~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~~~----~~i~~--~~~g~~~~~~~~~----~~~~~ 322 (359)
T cd03808 254 RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPGCR----EAVID--GVNGFLVPPGDAE----ALADA 322 (359)
T ss_pred cccHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCCch----hhhhc--CcceEEECCCCHH----HHHHH
Confidence 34567889999999999765545566999999996 88888763210 11002 2445667776665 55555
Q ss_pred HcCC--CHHHHHHHHHHHHhh-cceeeE
Q 012984 392 LMSI--PNAKVRRMRERVIEL-MPGVIY 416 (452)
Q Consensus 392 L~~I--~~~~i~~Mq~~l~~v-~~~f~Y 416 (452)
+..+ .++...+|.++.++. ..+|.+
T Consensus 323 i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 350 (359)
T cd03808 323 IERLIEDPELRARMGQAARKRAEEEFDE 350 (359)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCH
Confidence 5443 466777777776654 444443
No 19
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=91.85 E-value=0.2 Score=51.58 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=62.0
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKIV 389 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l~ 389 (452)
..+..+.|+.+..++.|.=.......+.|||++|| |||.++.. -.+- . =....+.++..|.. .+.
T Consensus 293 ~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~-------~~~e~i~-~~~~g~~~~~~d~~----~la 359 (405)
T TIGR03449 293 PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVG-------GLPVAVA-DGETGLLVDGHDPA----DWA 359 (405)
T ss_pred HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCC-------CcHhhhc-cCCceEECCCCCHH----HHH
Confidence 35677889999988888643333445999999996 88888753 1221 1 12345667777766 444
Q ss_pred HHHcCC--CHHHHHHHHHHHHhhcceeeEec
Q 012984 390 DVLMSI--PNAKVRRMRERVIELMPGVIYRR 418 (452)
Q Consensus 390 ~iL~~I--~~~~i~~Mq~~l~~v~~~f~Y~~ 418 (452)
+.|..+ .++...+|.++..+....|.|..
T Consensus 360 ~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~~ 390 (405)
T TIGR03449 360 DALARLLDDPRTRIRMGAAAVEHAAGFSWAA 390 (405)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHhCCHHH
Confidence 444332 46778899888887777776654
No 20
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=91.81 E-value=0.21 Score=50.27 Aligned_cols=92 Identities=12% Similarity=0.162 Sum_probs=60.5
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKIVD 390 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l~~ 390 (452)
.+..+.|+.+..++.|.-.......+.|||.+| +|||.++.. ..+- . -..-...++..++. .+.+
T Consensus 262 ~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~-------~~~e~i~-~~~~G~~~~~~~~~----~l~~ 328 (371)
T cd04962 262 DHVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAG-------GIPEVVK-HGETGFLVDVGDVE----AMAE 328 (371)
T ss_pred ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCC-------Cchhhhc-CCCceEEcCCCCHH----HHHH
Confidence 357788999999999974433445699999999 689988763 2222 1 12334556666665 4444
Q ss_pred HHcCC--CHHHHHHHHHHHHhh-cceeeEe
Q 012984 391 VLMSI--PNAKVRRMRERVIEL-MPGVIYR 417 (452)
Q Consensus 391 iL~~I--~~~~i~~Mq~~l~~v-~~~f~Y~ 417 (452)
.+..+ .++.+.+|+++..+. ..+|.|.
T Consensus 329 ~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 329 YALSLLEDDELWQEFSRAARNRAAERFDSE 358 (371)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 44332 577888999988875 5555553
No 21
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=91.80 E-value=1 Score=47.01 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=63.1
Q ss_pred cchhhcccccceEEecCCC-------CCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccc
Q 012984 312 PIRFMRPMLRATFCLQPPG-------DTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVV 382 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~G-------d~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~ 382 (452)
..+..+.|+.+..++.|.= ++.. ..+.|||++|+ |||.++.. -.|- . =..-.+.+++.|..
T Consensus 289 ~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p-~~llEAma~G~-PVI~t~~~-------g~~E~v~-~~~~G~lv~~~d~~ 358 (406)
T PRK15427 289 SHEVKAMLDDADVFLLPSVTGADGDMEGIP-VALMEAMAVGI-PVVSTLHS-------GIPELVE-ADKSGWLVPENDAQ 358 (406)
T ss_pred HHHHHHHHHhCCEEEECCccCCCCCccCcc-HHHHHHHhCCC-CEEEeCCC-------Cchhhhc-CCCceEEeCCCCHH
Confidence 3567889999999998852 3333 34899999996 99998764 2332 2 13456778888877
Q ss_pred cccccHHHHHcCC---CHHHHHHHHHHHHh-hcceeeEe
Q 012984 383 FKGLKIVDVLMSI---PNAKVRRMRERVIE-LMPGVIYR 417 (452)
Q Consensus 383 ~~~~~l~~iL~~I---~~~~i~~Mq~~l~~-v~~~f~Y~ 417 (452)
.+.+.|..+ ++++..+|.++.++ +..+|-|.
T Consensus 359 ----~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 359 ----ALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred ----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHH
Confidence 666665544 67778888888775 45666553
No 22
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=91.80 E-value=0.25 Score=49.20 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=60.7
Q ss_pred cchhhcccccceEEecCC--CCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHH
Q 012984 312 PIRFMRPMLRATFCLQPP--GDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIV 389 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~--Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~ 389 (452)
..+..+.|+.|...+.|. ..+.+ ..++|||++|| |||.++.... .--.. -....+.++..+.. .+.
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~-~~l~EA~a~G~-PvI~~~~~~~-----~e~i~-~~~~g~~~~~~~~~----~l~ 321 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFG-RTAVEAQAMGR-PVIASDHGGA-----RETVR-PGETGLLVPPGDAE----ALA 321 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCc-hHHHHHHhcCC-CEEEcCCCCc-----HHHHh-CCCceEEeCCCCHH----HHH
Confidence 456788899999999986 23333 45899999999 8888875311 10012 12345667777777 666
Q ss_pred HHHc-C--CCHHHHHHHHHHHHhh-cceeeE
Q 012984 390 DVLM-S--IPNAKVRRMRERVIEL-MPGVIY 416 (452)
Q Consensus 390 ~iL~-~--I~~~~i~~Mq~~l~~v-~~~f~Y 416 (452)
+.|. . .++++..+|.++.++. ..+|.|
T Consensus 322 ~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~ 352 (355)
T cd03819 322 QALDQILSLLPEGRAKMFAKARMCVETLFSY 352 (355)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhh
Confidence 6652 2 3678888888887764 355544
No 23
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=91.41 E-value=0.17 Score=51.17 Aligned_cols=94 Identities=12% Similarity=0.150 Sum_probs=61.4
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
.+..+.++.|..++.|.-.......++|||++| +|||.++..... ++=-+ ....+.++..+.. .+.+.+
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G-~Pvi~s~~~~~~----e~i~~--~~~g~~~~~~~~~----~l~~~i 362 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACG-LPVVATAVGGPR----DIVVD--GVTGLLVDPRDPE----ALAAAL 362 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcC-CCEEECCCCCHH----HHccC--CCCeEEeCCCCHH----HHHHHH
Confidence 456778999999999976555455699999999 599998753100 11012 2356667766655 454444
Q ss_pred cCC--CHHHHHHHHHHHHhhc-ceeeEe
Q 012984 393 MSI--PNAKVRRMRERVIELM-PGVIYR 417 (452)
Q Consensus 393 ~~I--~~~~i~~Mq~~l~~v~-~~f~Y~ 417 (452)
..+ .++++.+|.++.++.. .+|.|.
T Consensus 363 ~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 390 (398)
T cd03800 363 RRLLTDPALRRRLSRAGLRRARARYTWE 390 (398)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 433 4778888888877654 666654
No 24
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=90.64 E-value=0.27 Score=48.83 Aligned_cols=92 Identities=7% Similarity=0.023 Sum_probs=55.9
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
.+..+.|+.+.+.+.|.........++|||.+|| |||.+|.. ..+-- -.+....++..+.. .+.+.+
T Consensus 254 ~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~-------~~~e~-i~~~g~~~~~~~~~----~~~~~i 320 (360)
T cd04951 254 DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAG-------GVREV-VGDSGLIVPISDPE----ALANKI 320 (360)
T ss_pred ccHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCC-------ChhhE-ecCCceEeCCCCHH----HHHHHH
Confidence 3556789999998888765444556999999999 88888753 11110 11233455556655 444444
Q ss_pred cC---CCHHHHHHHHHHHHhhcceeeEe
Q 012984 393 MS---IPNAKVRRMRERVIELMPGVIYR 417 (452)
Q Consensus 393 ~~---I~~~~i~~Mq~~l~~v~~~f~Y~ 417 (452)
.. .+++....|.++...+...|.|.
T Consensus 321 ~~ll~~~~~~~~~~~~~~~~~~~~~s~~ 348 (360)
T cd04951 321 DEILKMSGEERDIIGARRERIVKKFSIN 348 (360)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCHH
Confidence 33 35556666666533455555553
No 25
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=90.39 E-value=0.28 Score=48.15 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=55.5
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
.+..+.|+.+.+++.|.-.......++|||.+|| |||.++..... ++ .. - ...+.++.+ .. .+.+.+
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~~~~----~~-~~-~-~~~~~~~~~-~~----~~~~~i 339 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKVPWQ----EL-IE-Y-GCGWVVDDD-VD----ALAAAL 339 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCCCHH----HH-hh-c-CceEEeCCC-hH----HHHHHH
Confidence 4667889999999998765444456999999997 88888763110 00 01 1 233334333 23 333333
Q ss_pred cCC--CHHHHHHHHHHHHhh-cceeeEe
Q 012984 393 MSI--PNAKVRRMRERVIEL-MPGVIYR 417 (452)
Q Consensus 393 ~~I--~~~~i~~Mq~~l~~v-~~~f~Y~ 417 (452)
..+ .+++.++|.++.++. ..+|.|.
T Consensus 340 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 367 (375)
T cd03821 340 RRALELPQRLKAMGENGRALVEERFSWT 367 (375)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 322 246788888887765 5666553
No 26
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=89.88 E-value=0.44 Score=46.71 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=57.0
Q ss_pred cchhhcccccceEEecCCC-CCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHH
Q 012984 312 PIRFMRPMLRATFCLQPPG-DTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVD 390 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~G-d~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~ 390 (452)
..+..+.|+.+..++.|.- .......++|||++| +|||.++..... +. .+ -....+.++..|+. .+.+
T Consensus 253 ~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~~~~----e~-i~-~~~~g~~~~~~d~~----~l~~ 321 (359)
T cd03823 253 QEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIGGMA----EL-VR-DGVNGLLFPPGDAE----DLAA 321 (359)
T ss_pred HHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCCCHH----HH-hc-CCCcEEEECCCCHH----HHHH
Confidence 3567888999999999963 233344589999999 688887753110 11 12 23356777777766 5555
Q ss_pred HHcCC--CHHHHHHHHHHHHhh
Q 012984 391 VLMSI--PNAKVRRMRERVIEL 410 (452)
Q Consensus 391 iL~~I--~~~~i~~Mq~~l~~v 410 (452)
.+..+ .++...+|+++.++.
T Consensus 322 ~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03823 322 ALERLIDDPDLLERLRAGIEPP 343 (359)
T ss_pred HHHHHHhChHHHHHHHHhHHHh
Confidence 54433 467788888877543
No 27
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=89.57 E-value=0.43 Score=48.51 Aligned_cols=94 Identities=11% Similarity=0.170 Sum_probs=60.0
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCcc------cc
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDV------VF 383 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv------~~ 383 (452)
..+..+.|+.|..++.|.-.......++|||.+|| |||.+|.. ..+- . -....+.++..+. .
T Consensus 271 ~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~-------~~~e~i~-~~~~G~~~~~~~~~~~~~~~- 340 (388)
T TIGR02149 271 KEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATG-------GIPEVVV-DGETGFLVPPDNSDADGFQA- 340 (388)
T ss_pred HHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCC-------CHHHHhh-CCCceEEcCCCCCcccchHH-
Confidence 35577889999999998654444455889999999 89998753 2222 1 1233556665554 3
Q ss_pred ccccHHHHHcCC--CHHHHHHHHHHHHh-hcceeeEec
Q 012984 384 KGLKIVDVLMSI--PNAKVRRMRERVIE-LMPGVIYRR 418 (452)
Q Consensus 384 ~~~~l~~iL~~I--~~~~i~~Mq~~l~~-v~~~f~Y~~ 418 (452)
.+.+.|..+ .+++..+|.++.++ +...|.|..
T Consensus 341 ---~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~ 375 (388)
T TIGR02149 341 ---ELAKAINILLADPELAKKMGIAGRKRAEEEFSWGS 375 (388)
T ss_pred ---HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 344444332 47777888888765 445666643
No 28
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=89.55 E-value=0.45 Score=47.72 Aligned_cols=92 Identities=22% Similarity=0.244 Sum_probs=59.8
Q ss_pred chhhcccccceEEecCCCC-------CCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCcccc
Q 012984 313 IRFMRPMLRATFCLQPPGD-------TPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVF 383 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd-------~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~ 383 (452)
.+..+.|+.|...+.|.-. +. ...++|||.+|| |||.+|.. ..+- . =....+.++..+..
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~-~~~~~EA~a~G~-PvI~s~~~-------~~~e~i~-~~~~g~~~~~~d~~- 324 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGL-PVVLLEAQASGV-PVVATRHG-------GIPEAVE-DGETGLLVPEGDVA- 324 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCC-chHHHHHHHcCC-CEEEeCCC-------Cchhhee-cCCeeEEECCCCHH-
Confidence 4567888888888877531 22 345999999997 99998874 1221 2 13456777777766
Q ss_pred ccccHHHHHcCC--CHHHHHHHHHHHHh-hcceeeEec
Q 012984 384 KGLKIVDVLMSI--PNAKVRRMRERVIE-LMPGVIYRR 418 (452)
Q Consensus 384 ~~~~l~~iL~~I--~~~~i~~Mq~~l~~-v~~~f~Y~~ 418 (452)
.+.+.|..+ .++...+|.++..+ +..+|.|..
T Consensus 325 ---~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~ 359 (367)
T cd05844 325 ---ALAAALGRLLADPDLRARMGAAGRRRVEERFDLRR 359 (367)
T ss_pred ---HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 555555433 45667788877765 445666643
No 29
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=89.41 E-value=0.43 Score=49.19 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=58.6
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKIV 389 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l~ 389 (452)
..++.+.|+.|..++.|.-.......++|||++|| |||.+|.. ..+- . -..-.+.++..|.. .+.
T Consensus 291 ~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~~-------g~~e~i~-~~~~G~lv~~~d~~----~la 357 (396)
T cd03818 291 YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDTA-------PVREVIT-DGENGLLVDFFDPD----ALA 357 (396)
T ss_pred HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCCC-------Cchhhcc-cCCceEEcCCCCHH----HHH
Confidence 35677889899988887644333446899999999 88888753 1221 2 12345667766655 444
Q ss_pred HHHcCC--CHHHHHHHHHHHHhhc-ceeeEe
Q 012984 390 DVLMSI--PNAKVRRMRERVIELM-PGVIYR 417 (452)
Q Consensus 390 ~iL~~I--~~~~i~~Mq~~l~~v~-~~f~Y~ 417 (452)
+.|..+ .+++..+|.++.++.. .+|.|.
T Consensus 358 ~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~ 388 (396)
T cd03818 358 AAVIELLDDPARRARLRRAARRTALRYDLLS 388 (396)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHhccHH
Confidence 443332 3567788888877633 445553
No 30
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=89.21 E-value=0.69 Score=44.72 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=48.9
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccH---
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKI--- 388 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l--- 388 (452)
+..+.++.|.+++.|.-.......+.|||.+|| |||.+|.. ..+- . =....+.++.++.. .+
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~-PvI~~~~~-------~~~e~i~-~~~~g~~~~~~~~~----~~~~~ 322 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGT-PVVATDCP-------GPREILE-DGENGLLVPVGDEA----ALAAA 322 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCC-CEEEcCCC-------ChHHHhc-CCCceEEECCCCHH----HHHHH
Confidence 456789999999999754434455999999998 56777653 1111 2 13456677777766 43
Q ss_pred -HHHHcCCC-HHHHHHHHH
Q 012984 389 -VDVLMSIP-NAKVRRMRE 405 (452)
Q Consensus 389 -~~iL~~I~-~~~i~~Mq~ 405 (452)
..++.... ++...+|.+
T Consensus 323 ~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 323 ALALLDLLLDPELRERLAA 341 (353)
T ss_pred HHHHHhccCChHHHHHHHH
Confidence 33333222 445666666
No 31
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=89.17 E-value=0.27 Score=47.96 Aligned_cols=94 Identities=11% Similarity=0.116 Sum_probs=55.6
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
.+..+.+++|.+++.|.........++|||.+|| |||.++..+.. ++- . -....+.+...+.. ++.+.|
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~~~----~~~-~-~~~~g~~~~~~~~~----~l~~~i 338 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGGIP----EII-T-DGENGLLVPPGDPE----ALAEAI 338 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCChH----HHh-c-CCcceeEECCCCHH----HHHHHH
Confidence 4577899999999999865555556999999999 77877753210 111 2 12234566766666 555555
Q ss_pred cCCC-HHHHHHHHHHHHhhcceeeEe
Q 012984 393 MSIP-NAKVRRMRERVIELMPGVIYR 417 (452)
Q Consensus 393 ~~I~-~~~i~~Mq~~l~~v~~~f~Y~ 417 (452)
..+- ..+....+++...+...+.|.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 339 LRLLADPWLRLGRAARRRVAERFSWE 364 (377)
T ss_pred HHHhcCcHHHHhHHHHHHHHHHhhHH
Confidence 4332 112233344444455555553
No 32
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=89.02 E-value=0.8 Score=44.98 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=55.6
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDV 391 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~i 391 (452)
..+..+.|+.|.+.+.|.........++|||.+|+ |||..+..+. ..-.. -..-.+.++..+.. -...|.++
T Consensus 269 ~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~~~-----~~~i~-~~~~g~~~~~~~~~-~~~~i~~l 340 (374)
T cd03817 269 REELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAPGL-----PDLVA-DGENGFLFPPGDEA-LAEALLRL 340 (374)
T ss_pred hHHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCCCh-----hhhee-cCceeEEeCCCCHH-HHHHHHHH
Confidence 35677889999999999865445566999999987 6677665421 11111 12345555555421 00034444
Q ss_pred HcCCCHHHHHHHHHHHHhhccee
Q 012984 392 LMSIPNAKVRRMRERVIELMPGV 414 (452)
Q Consensus 392 L~~I~~~~i~~Mq~~l~~v~~~f 414 (452)
+. .++...+|+++.++...++
T Consensus 341 ~~--~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 341 LQ--DPELRRRLSKNAEESAEKF 361 (374)
T ss_pred Hh--ChHHHHHHHHHHHHHHHHH
Confidence 43 3555678888887665544
No 33
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=88.75 E-value=0.72 Score=45.65 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=57.2
Q ss_pred cchhhcccccceEEecCCCC------CCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCcccc
Q 012984 312 PIRFMRPMLRATFCLQPPGD------TPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVF 383 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd------~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~ 383 (452)
..+..+.|+++.+++.|... ......++|||.+|| |||.++.. ..+- . =..-...+++.+..
T Consensus 246 ~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~-Pvi~~~~~-------~~~~~i~-~~~~g~~~~~~~~~- 315 (355)
T cd03799 246 QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGL-PVISTDVS-------GIPELVE-DGETGLLVPPGDPE- 315 (355)
T ss_pred hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCC-CEEecCCC-------Ccchhhh-CCCceEEeCCCCHH-
Confidence 35678899999999998653 223455999999998 55556543 1221 1 12235566665655
Q ss_pred ccccHHHHHcCC--CHHHHHHHHHHHHh-hcceeeEe
Q 012984 384 KGLKIVDVLMSI--PNAKVRRMRERVIE-LMPGVIYR 417 (452)
Q Consensus 384 ~~~~l~~iL~~I--~~~~i~~Mq~~l~~-v~~~f~Y~ 417 (452)
.+.+.|..+ .+++..+|.++..+ +..+|.|.
T Consensus 316 ---~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 316 ---ALADAIERLLDDPELRREMGEAGRARVEEEFDIR 349 (355)
T ss_pred ---HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 555554433 35667888888765 34555553
No 34
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=88.36 E-value=0.85 Score=45.34 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=57.7
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
..+.+.|+.|.+.+.|.........++|||.+|| |||..+..... ++--+ .+..+.++..+.. .+.+.|
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~~~~~----e~~~~--~~~g~~~~~~~~~----~~~~~l 324 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPNTAIEALACGT-PVVAFDVGGIP----DIVDH--GVTGYLAKPGDPE----DLAEGI 324 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccHHHHHHHhcCC-CEEEecCCCCh----hheeC--CCceEEeCCCCHH----HHHHHH
Confidence 4566789999999999876555566999999998 67776643110 11112 2345566666655 444444
Q ss_pred cCC--CHHHHHHHHHHHHhhc-ceeeE
Q 012984 393 MSI--PNAKVRRMRERVIELM-PGVIY 416 (452)
Q Consensus 393 ~~I--~~~~i~~Mq~~l~~v~-~~f~Y 416 (452)
..+ .+++..+|.++..+.. ..|.|
T Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~~s~ 351 (365)
T cd03825 325 EWLLADPDEREELGEAARELAENEFDS 351 (365)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhcCH
Confidence 322 4566788888876533 34433
No 35
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=88.08 E-value=2.5 Score=43.60 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=56.0
Q ss_pred cchhhcccccceEEecCCCC-CCCCchHHHHHhhCceeEEeecCcccccccccCCC---CCCCceEEEeecCcccccccc
Q 012984 312 PIRFMRPMLRATFCLQPPGD-TPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG---EMYDEFSVFIPKEDVVFKGLK 387 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd-~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf---D~w~~fsV~I~e~dv~~~~~~ 387 (452)
..+..+.|+.|..++.|... ..-...++|||++| +|||.++.. -.|- | ...=-+.++..+.. .
T Consensus 267 ~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~g-------g~~Eiv~~-~~~G~~l~~~~d~~----~ 333 (380)
T PRK15484 267 PEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKG-------GITEFVLE-GITGYHLAEPMTSD----S 333 (380)
T ss_pred HHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCC-------CcHhhccc-CCceEEEeCCCCHH----H
Confidence 34677889999999999753 22234588999999 699998853 2221 3 11111234444554 4
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHh-hcceeeEec
Q 012984 388 IVDVLMS-IPNAKVRRMRERVIE-LMPGVIYRR 418 (452)
Q Consensus 388 l~~iL~~-I~~~~i~~Mq~~l~~-v~~~f~Y~~ 418 (452)
+.+.|.. +.+.+..+|.++.++ +..+|.|..
T Consensus 334 la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~ 366 (380)
T PRK15484 334 IISDINRTLADPELTQIAEQAKDFVFSKYSWEG 366 (380)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHH
Confidence 4444332 223345677777764 567777754
No 36
>PRK00654 glgA glycogen synthase; Provisional
Probab=87.36 E-value=2.9 Score=44.42 Aligned_cols=92 Identities=11% Similarity=0.140 Sum_probs=56.1
Q ss_pred hhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCC-----CceEEEeecCccccccccHH
Q 012984 315 FMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMY-----DEFSVFIPKEDVVFKGLKIV 389 (452)
Q Consensus 315 y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w-----~~fsV~I~e~dv~~~~~~l~ 389 (452)
....++.|.+++.|.=..+......|||++||+||+-.-+-. -+.-.| . +.-.+.++..|.. .|.
T Consensus 350 ~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~-----~e~v~~-~~~~~~~~~G~lv~~~d~~----~la 419 (466)
T PRK00654 350 AHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGL-----ADTVID-YNPEDGEATGFVFDDFNAE----DLL 419 (466)
T ss_pred HHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCc-----cceeec-CCCCCCCCceEEeCCCCHH----HHH
Confidence 456789999999997666655668899999998876432210 011112 1 1446777777766 555
Q ss_pred HHHcCC-----CHHHHHHHHHHHHhhcceeeEec
Q 012984 390 DVLMSI-----PNAKVRRMRERVIELMPGVIYRR 418 (452)
Q Consensus 390 ~iL~~I-----~~~~i~~Mq~~l~~v~~~f~Y~~ 418 (452)
+.|..+ .++...+|.++.. ...|.|..
T Consensus 420 ~~i~~~l~~~~~~~~~~~~~~~~~--~~~fsw~~ 451 (466)
T PRK00654 420 RALRRALELYRQPPLWRALQRQAM--AQDFSWDK 451 (466)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHh--ccCCChHH
Confidence 555432 3455667766653 24555533
No 37
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=87.08 E-value=0.93 Score=36.55 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=41.9
Q ss_pred CCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEee-cCccccccccHHHHHcCCCHHHHHHHHHHHHh-hc
Q 012984 334 TRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIP-KEDVVFKGLKIVDVLMSIPNAKVRRMRERVIE-LM 411 (452)
Q Consensus 334 ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~-e~dv~~~~~~l~~iL~~I~~~~i~~Mq~~l~~-v~ 411 (452)
...|+||+|++|++. |..+.... ..-|+ ..+-.+.++ .+++. ...+.|.+ .++++++|.++..+ +.
T Consensus 11 ~~~r~~E~~a~G~~v-i~~~~~~~-----~~~~~-~~~~~~~~~~~~el~----~~i~~ll~-~~~~~~~ia~~a~~~v~ 78 (92)
T PF13524_consen 11 PNMRIFEAMACGTPV-ISDDSPGL-----REIFE-DGEHIITYNDPEELA----EKIEYLLE-NPEERRRIAKNARERVL 78 (92)
T ss_pred CchHHHHHHHCCCeE-EECChHHH-----HHHcC-CCCeEEEECCHHHHH----HHHHHHHC-CHHHHHHHHHHHHHHHH
Confidence 344699999999954 44443211 22254 444455553 44554 44444444 68888999888865 44
Q ss_pred ceeeE
Q 012984 412 PGVIY 416 (452)
Q Consensus 412 ~~f~Y 416 (452)
.++.|
T Consensus 79 ~~~t~ 83 (92)
T PF13524_consen 79 KRHTW 83 (92)
T ss_pred HhCCH
Confidence 45555
No 38
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=86.63 E-value=3.1 Score=44.14 Aligned_cols=90 Identities=11% Similarity=0.137 Sum_probs=56.9
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC---CCC-----CceEEEeecCcccccc
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG---EMY-----DEFSVFIPKEDVVFKG 385 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf---D~w-----~~fsV~I~e~dv~~~~ 385 (452)
...+.++.+.+++.|.-..+..-...|||++||.|| +++.. -++- | . ....+.+++.+..
T Consensus 358 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI-~s~~g-------g~~e~v~~-~~~~~~~~~G~l~~~~d~~--- 425 (473)
T TIGR02095 358 LAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPI-VRRTG-------GLADTVVD-GDPEAESGTGFLFEEYDPG--- 425 (473)
T ss_pred HHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeE-EccCC-------CccceEec-CCCCCCCCceEEeCCCCHH---
Confidence 355789999999999876666666889999999665 44432 2222 2 1 1456677777766
Q ss_pred ccHHHHHcCC------CHHHHHHHHHHHHhhcceeeEec
Q 012984 386 LKIVDVLMSI------PNAKVRRMRERVIELMPGVIYRR 418 (452)
Q Consensus 386 ~~l~~iL~~I------~~~~i~~Mq~~l~~v~~~f~Y~~ 418 (452)
.|.+.|..+ .++.+.+|.++.. ...|.|..
T Consensus 426 -~la~~i~~~l~~~~~~~~~~~~~~~~~~--~~~fsw~~ 461 (473)
T TIGR02095 426 -ALLAALSRALRLYRQDPSLWEALQKNAM--SQDFSWDK 461 (473)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHh--ccCCCcHH
Confidence 555554432 4566777777653 34555543
No 39
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=86.24 E-value=0.69 Score=46.83 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=58.7
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKIVD 390 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l~~ 390 (452)
.+..+.|+++..++.|.-.......+.|||.+|| |||..+-. +..+- . =.+..+.++..+.. .+.+
T Consensus 270 ~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~------~g~~~~v~-~~~~G~lv~~~d~~----~la~ 337 (372)
T cd04949 270 RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVN------YGPSEIIE-DGENGYLVPKGDIE----ALAE 337 (372)
T ss_pred CCHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCC------CCcHHHcc-cCCCceEeCCCcHH----HHHH
Confidence 3466788999999988744333345889999999 88877632 01111 1 13455677766655 4444
Q ss_pred HHcCC--CHHHHHHHHHHHHhhcceeeE
Q 012984 391 VLMSI--PNAKVRRMRERVIELMPGVIY 416 (452)
Q Consensus 391 iL~~I--~~~~i~~Mq~~l~~v~~~f~Y 416 (452)
.|..+ .++.+.+|+++..+....|.|
T Consensus 338 ~i~~ll~~~~~~~~~~~~a~~~~~~~s~ 365 (372)
T cd04949 338 AIIELLNDPKLLQKFSEAAYENAERYSE 365 (372)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 44332 467889999888876666554
No 40
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=85.39 E-value=0.51 Score=47.45 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=41.4
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccc
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVV 382 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~ 382 (452)
..+..+.|+.+..++.|.-.+.+.. ++|||++|| |||.++.. ..+- . =.+..+.++..+..
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~-~~Eama~G~-Pvi~~~~~-------~~~e~i~-~~~~G~~~~~~~~~ 314 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIV-PVEAMASGT-PVIAYGKG-------GALETVI-DGVTGILFEEQTVE 314 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCch-HHHHHHcCC-CEEEeCCC-------CCcceee-CCCCEEEeCCCCHH
Confidence 3457889999999998865555444 789999998 99988753 1221 1 12346667766655
No 41
>PRK14098 glycogen synthase; Provisional
Probab=84.89 E-value=4.3 Score=43.69 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=57.1
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
....+.|+.|.+++.|.-..+......|||++||+||+..-+-... .....+.-..-.+.++..|.. .|.+.|
T Consensus 373 ~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d---~v~~~~~~~~~G~l~~~~d~~----~la~ai 445 (489)
T PRK14098 373 AFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVE---TIEEVSEDKGSGFIFHDYTPE----ALVAKL 445 (489)
T ss_pred HHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCce---eeecCCCCCCceeEeCCCCHH----HHHHHH
Confidence 3456789999999999866555556789999999998765431000 001110012335566776665 555554
Q ss_pred cCC-----CHHHHHHHHHHHHhhcceeeEec
Q 012984 393 MSI-----PNAKVRRMRERVIELMPGVIYRR 418 (452)
Q Consensus 393 ~~I-----~~~~i~~Mq~~l~~v~~~f~Y~~ 418 (452)
..+ .++++.+|+++. +...|.|..
T Consensus 446 ~~~l~~~~~~~~~~~~~~~~--~~~~fsw~~ 474 (489)
T PRK14098 446 GEALALYHDEERWEELVLEA--MERDFSWKN 474 (489)
T ss_pred HHHHHHHcCHHHHHHHHHHH--hcCCCChHH
Confidence 431 356666666544 335565544
No 42
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=84.79 E-value=1.1 Score=46.24 Aligned_cols=91 Identities=9% Similarity=0.152 Sum_probs=56.4
Q ss_pred hhhcccccceEEecCC--CCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHH
Q 012984 314 RFMRPMLRATFCLQPP--GDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDV 391 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~--Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~i 391 (452)
+....|+.+..++.|. |.|... .+.|||++|| |||.++... ..+.-. ..-.+.++ .+.. .+.+.
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG~~~-~~lEAma~G~-PVV~t~~~~-----~~i~~~--~~~g~lv~-~~~~----~la~a 355 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARGIQN-KVLEAMAMAK-PVVASPEAA-----EGIDAL--PGAELLVA-ADPA----DFAAA 355 (397)
T ss_pred CHHHHHHhCCEEEecccccCCccc-HHHHHHHcCC-CEEecCccc-----cccccc--CCcceEeC-CCHH----HHHHH
Confidence 4567788899998885 445443 4899999998 999987421 012211 12345555 4544 44444
Q ss_pred HcCC--CHHHHHHHHHHHHh-hcceeeEec
Q 012984 392 LMSI--PNAKVRRMRERVIE-LMPGVIYRR 418 (452)
Q Consensus 392 L~~I--~~~~i~~Mq~~l~~-v~~~f~Y~~ 418 (452)
+..+ .+++..+|.++.++ +..+|.|..
T Consensus 356 i~~ll~~~~~~~~~~~~ar~~v~~~fsw~~ 385 (397)
T TIGR03087 356 ILALLANPAEREELGQAARRRVLQHYHWPR 385 (397)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3322 46677888888776 446777754
No 43
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=84.23 E-value=1.4 Score=43.79 Aligned_cols=91 Identities=13% Similarity=0.210 Sum_probs=51.5
Q ss_pred chhhcccccceEEecCCCC-CCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCc-cccccccHHH
Q 012984 313 IRFMRPMLRATFCLQPPGD-TPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKED-VVFKGLKIVD 390 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd-~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~d-v~~~~~~l~~ 390 (452)
.+..+.+..+..++.|.-. ......++|||.+|| |||.++.. ..+-- -..-...++..+ +. +...
T Consensus 259 ~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~-------~~~e~-~~~~g~~~~~~~~l~----~~i~ 325 (363)
T cd04955 259 QELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP-------FNREV-LGDKAIYFKVGDDLA----SLLE 325 (363)
T ss_pred HHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC-------cccee-ecCCeeEecCchHHH----HHHH
Confidence 4566778888888777544 333445999999999 88887653 12220 111233334444 33 3333
Q ss_pred HHcCCCHHHHHHHHHHHHhhc-ceeeEe
Q 012984 391 VLMSIPNAKVRRMRERVIELM-PGVIYR 417 (452)
Q Consensus 391 iL~~I~~~~i~~Mq~~l~~v~-~~f~Y~ 417 (452)
.|.+- ++.+.+|.++..+.. .+|.|+
T Consensus 326 ~l~~~-~~~~~~~~~~~~~~~~~~fs~~ 352 (363)
T cd04955 326 ELEAD-PEEVSAMAKAARERIREKYTWE 352 (363)
T ss_pred HHHhC-HHHHHHHHHHHHHHHHHhCCHH
Confidence 33332 466777887776543 345553
No 44
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=83.78 E-value=1.8 Score=42.85 Aligned_cols=93 Identities=11% Similarity=0.079 Sum_probs=58.8
Q ss_pred chhhcccccceEEecCC---CCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHH
Q 012984 313 IRFMRPMLRATFCLQPP---GDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIV 389 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~---Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~ 389 (452)
....+.++.+..++.|. +.+.+. .+.|||.+|+ |||.++..... +.--+ .......++..|.. .+.
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~-~~~Ea~~~g~-Pvi~~~~~~~~----~~i~~-~~~~g~~~~~~d~~----~~~ 323 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGI-VLLEAMAFGK-PVISTEIGTGG----SYVNL-HGVTGLVVPPGDPA----ALA 323 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccch-HHHHHHHcCC-CEEecCCCCch----hHHhh-CCCceEEeCCCCHH----HHH
Confidence 45678888899999885 234443 4889999975 77887753110 00001 14566677777766 555
Q ss_pred HHHcCC--CHHHHHHHHHHHHhh-cceeeE
Q 012984 390 DVLMSI--PNAKVRRMRERVIEL-MPGVIY 416 (452)
Q Consensus 390 ~iL~~I--~~~~i~~Mq~~l~~v-~~~f~Y 416 (452)
+.+..+ .+++..+|+++.++. .++|.+
T Consensus 324 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 353 (357)
T cd03795 324 EAIRRLLEDPELRERLGEAARERAEEEFTA 353 (357)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHhcch
Confidence 555443 577888999988874 355544
No 45
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=83.54 E-value=1.7 Score=42.69 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=32.3
Q ss_pred chhhcccccceEEecCCC--CCCCCchHHHHHhhCceeEEeecCc
Q 012984 313 IRFMRPMLRATFCLQPPG--DTPTRRSTFDGFLAGCIPVFFEEQS 355 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~G--d~~ssrrl~DAi~~GCIPVii~d~~ 355 (452)
.+..+.|+.+.+++.|.- .+.+ ..++|||++|+ |||.+|..
T Consensus 235 ~~~~~~~~~~d~~v~ps~~~E~~~-~~~lEAma~G~-PvI~~~~~ 277 (335)
T cd03802 235 AEKAELLGNARALLFPILWEEPFG-LVMIEAMACGT-PVIAFRRG 277 (335)
T ss_pred HHHHHHHHhCcEEEeCCcccCCcc-hHHHHHHhcCC-CEEEeCCC
Confidence 345678999999999974 3433 45999999997 99998864
No 46
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=83.37 E-value=1.6 Score=44.42 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=54.5
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
....+.|+.|.+++.|.........++|||++| +|||.+|.... -++=-+ .. -.+.++. +.. .+.+.|
T Consensus 291 ~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G-~PvI~s~~~~~----~e~i~~-~~-~g~~~~~-~~~----~~a~~i 358 (392)
T cd03805 291 SQKELLLSSARALLYTPSNEHFGIVPLEAMYAG-KPVIACNSGGP----LETVVD-GE-TGFLCEP-TPE----EFAEAM 358 (392)
T ss_pred HHHHHHHhhCeEEEECCCcCCCCchHHHHHHcC-CCEEEECCCCc----HHHhcc-CC-ceEEeCC-CHH----HHHHHH
Confidence 445678999999998876544445589999999 58888875310 011113 22 2334444 443 333333
Q ss_pred cCC--CHHHHHHHHHHHHh-hcceeeEe
Q 012984 393 MSI--PNAKVRRMRERVIE-LMPGVIYR 417 (452)
Q Consensus 393 ~~I--~~~~i~~Mq~~l~~-v~~~f~Y~ 417 (452)
..+ .++...+|+++.++ +...|.|.
T Consensus 359 ~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 386 (392)
T cd03805 359 LKLANDPDLADRMGAAGRKRVKEKFSTE 386 (392)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhcCHH
Confidence 322 35678888887765 44566554
No 47
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=83.28 E-value=5.2 Score=41.81 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=51.1
Q ss_pred cchhhcccccceEEecCC----CCCCCCchHHHHHhhCceeEEeecCcccccccccCCC---CCCCceEEEeecCccccc
Q 012984 312 PIRFMRPMLRATFCLQPP----GDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG---EMYDEFSVFIPKEDVVFK 384 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~----Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf---D~w~~fsV~I~e~dv~~~ 384 (452)
..++.+.|+.|..++.|. |.+. ...++|||++|+ |||.++.. ..+- | ..-.+.++ +..+-
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~-p~~~~Eama~G~-PVI~s~~~-------~~~eiv~~--~~~G~lv~--d~~~l 371 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDL-PMKVVDMFGCGL-PVCALDFK-------CIDELVKH--GENGLVFG--DSEEL 371 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCC-cHHHHHHHHcCC-CEEEeCCC-------CHHHHhcC--CCCEEEEC--CHHHH
Confidence 467788888888887532 3333 345899999999 99998853 1221 2 12233332 44311
Q ss_pred cccHHHHHcC-CCHHHHHHHHHHHHhhc
Q 012984 385 GLKIVDVLMS-IPNAKVRRMRERVIELM 411 (452)
Q Consensus 385 ~~~l~~iL~~-I~~~~i~~Mq~~l~~v~ 411 (452)
...|..+|.. .++++..+|.++.++..
T Consensus 372 a~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 372 AEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 1123333342 12788899988887544
No 48
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=83.20 E-value=1.4 Score=44.86 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=57.1
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC---CCCCceEEEeecCccccccccH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG---EMYDEFSVFIPKEDVVFKGLKI 388 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf---D~w~~fsV~I~e~dv~~~~~~l 388 (452)
.....+.++.+..++.|.........+.|||++| +|||.++.. .++- | ....+.++..+.. ...|
T Consensus 264 ~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~-------~~~~~i~~--~~~g~~~~~~~~~--a~~i 331 (372)
T cd03792 264 DLEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVG-------GIPLQIED--GETGFLVDTVEEA--AVRI 331 (372)
T ss_pred HHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCC-------Cchhhccc--CCceEEeCCcHHH--HHHH
Confidence 3556788899999998875443344588999999 599998863 2221 2 2223333322211 1134
Q ss_pred HHHHcCCCHHHHHHHHHHHHhh-cceeeEec
Q 012984 389 VDVLMSIPNAKVRRMRERVIEL-MPGVIYRR 418 (452)
Q Consensus 389 ~~iL~~I~~~~i~~Mq~~l~~v-~~~f~Y~~ 418 (452)
.++|. .++...+|.++.++. ...|.|..
T Consensus 332 ~~ll~--~~~~~~~~~~~a~~~~~~~~s~~~ 360 (372)
T cd03792 332 LYLLR--DPELRRKMGANAREHVRENFLITR 360 (372)
T ss_pred HHHHc--CHHHHHHHHHHHHHHHHHHcCHHH
Confidence 55554 467788998888774 45676643
No 49
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=82.09 E-value=6.1 Score=40.98 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=85.5
Q ss_pred CCCCCccccCCCCccCCCCchhhhhhhcccCCCCCceEEEEecCCCCCCCchHHHHHHHHHhhcCCCchhhhcCCCCccc
Q 012984 216 TWPWQEQAVPYPTSYHPSSLNLFESWVKRVRNSRRSTLMLFAGGGGVGANPNIRRSIRNECKSNHSSEVVAAAGGGGHFN 295 (452)
Q Consensus 216 ~w~~~Dv~iP~~~~~~P~~~~~i~~w~~~~~~~~R~~L~~F~G~~~~~~~~~iR~~L~~~~~~~~~~d~~~~~~~~~~~~ 295 (452)
++.+-|+.+||-. +.+.....+..+....-..+++.++.+.-... ...-|.++++.+. + .-.+
T Consensus 163 yr~dSd~~~pygy-~~~~~~~~~~~p~~~~~~~k~~~~aw~vSnc~---~~~~R~~~~~~L~-k-~l~i----------- 225 (372)
T KOG2619|consen 163 YRRDSDLFVPYGY-LEKPEANPVLVPVNSILSAKTKLAAWLVSNCI---PRSARLDYYKELM-K-HLEI----------- 225 (372)
T ss_pred EeccCCCCCccce-EeecccCceecccccccccccceeeeeccccC---cchHHHHHHHHHH-h-hCce-----------
Confidence 4556788888742 22211122211111222455666666665443 3467888887777 4 1110
Q ss_pred ceeEEeccCC--CcccCCcchhhcccccceEEecCC----CCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCC
Q 012984 296 KVCDIVDCSN--GICEHDPIRFMRPMLRATFCLQPP----GDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMY 369 (452)
Q Consensus 296 ~~~~~~~~~~--~~c~~~~~~y~~~m~~S~FCL~P~----Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w 369 (452)
-..-.|.. ..+ .......+.+.+=||=|.-- -|=.|-+ |+-|+.+|.|||+++... + .--+| +
T Consensus 226 --D~YG~c~~~~~~~-~~~~~~~~~~s~YKFyLAfENS~c~DYVTEK-fw~al~~gsVPVvlg~~n-~---e~fvP-~-- 294 (372)
T KOG2619|consen 226 --DSYGECLRKNANR-DPSDCLLETLSHYKFYLAFENSNCEDYVTEK-FWNALDAGSVPVVLGPPN-Y---ENFVP-P-- 294 (372)
T ss_pred --eeccccccccccC-CCCCcceeecccceEEEEecccCCcccccHH-HHhhhhcCcccEEECCcc-c---cccCC-C--
Confidence 01222211 111 22345678888999999732 3444444 999999999999999854 1 11244 3
Q ss_pred CceEEEeecCccccccccHHHHHcCCCHHHHH
Q 012984 370 DEFSVFIPKEDVVFKGLKIVDVLMSIPNAKVR 401 (452)
Q Consensus 370 ~~fsV~I~e~dv~~~~~~l~~iL~~I~~~~i~ 401 (452)
.=+|..+|..+.. +|...|+.+..++.+
T Consensus 295 ---~SfI~vdDF~s~~-ela~ylk~L~~n~~~ 322 (372)
T KOG2619|consen 295 ---DSFIHVDDFQSPQ-ELAAYLKKLDKNPAA 322 (372)
T ss_pred ---cceEehhhcCCHH-HHHHHHHHhhcCHHH
Confidence 1267777777555 777778777544433
No 50
>PHA01630 putative group 1 glycosyl transferase
Probab=82.03 E-value=1.5 Score=44.61 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=31.0
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecC
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
.+..+.|+.+..++.|.-......-+.|||++|| |||.+|.
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~~ 241 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTEK 241 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeCC
Confidence 5667789999999988644333444889999998 7777765
No 51
>PLN02949 transferase, transferring glycosyl groups
Probab=79.14 E-value=6.5 Score=42.06 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=52.4
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDV 391 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~i 391 (452)
..+..+.|+++.+++.|+-+..--..+.|||++||+||.-..+-... ....+.+ -..-. ++. .++. .+.+.
T Consensus 345 ~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~--eIV~~~~-~g~tG-~l~-~~~~----~la~a 415 (463)
T PLN02949 345 YRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM--DIVLDED-GQQTG-FLA-TTVE----EYADA 415 (463)
T ss_pred HHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc--eeeecCC-CCccc-ccC-CCHH----HHHHH
Confidence 35677788999988877643333344889999998766543321000 0011211 01111 111 1333 33333
Q ss_pred HcC---CCHHHHHHHHHHHHhhcceeeEec
Q 012984 392 LMS---IPNAKVRRMRERVIELMPGVIYRR 418 (452)
Q Consensus 392 L~~---I~~~~i~~Mq~~l~~v~~~f~Y~~ 418 (452)
|.. .++++..+|+++.++...+|.++.
T Consensus 416 i~~ll~~~~~~r~~m~~~ar~~~~~FS~e~ 445 (463)
T PLN02949 416 ILEVLRMRETERLEIAAAARKRANRFSEQR 445 (463)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 332 256778889988887666665543
No 52
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=78.24 E-value=2.3 Score=44.77 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=53.8
Q ss_pred hhhcccccc----eEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCcccccccc
Q 012984 314 RFMRPMLRA----TFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLK 387 (452)
Q Consensus 314 ~y~~~m~~S----~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~ 387 (452)
+..+.|+.+ ...+.|.-...-...+.|||++|| |||.++.- ..+- + =.+-.+.++..|.. .
T Consensus 329 ~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~g-------g~~eiv~-~~~~G~lv~~~d~~----~ 395 (439)
T TIGR02472 329 DVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL-PIVATDDG-------GPRDIIA-NCRNGLLVDVLDLE----A 395 (439)
T ss_pred HHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC-CEEEeCCC-------CcHHHhc-CCCcEEEeCCCCHH----H
Confidence 344555544 333445433222345899999999 99999853 2221 2 13446677777766 4
Q ss_pred HHHHHcCC--CHHHHHHHHHHHHh-hcceeeEec
Q 012984 388 IVDVLMSI--PNAKVRRMRERVIE-LMPGVIYRR 418 (452)
Q Consensus 388 l~~iL~~I--~~~~i~~Mq~~l~~-v~~~f~Y~~ 418 (452)
|.+.+..+ .+++..+|.++.++ +..+|.|..
T Consensus 396 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~ 429 (439)
T TIGR02472 396 IASALEDALSDSSQWQLWSRNGIEGVRRHYSWDA 429 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 54444332 46667778777764 556676643
No 53
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=78.16 E-value=10 Score=39.99 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=52.3
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC---CCCC-----ceEEEeecCcccccc
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG---EMYD-----EFSVFIPKEDVVFKG 385 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf---D~w~-----~fsV~I~e~dv~~~~ 385 (452)
...+.++.+.+.+.|.-..+......|||++||.||.-.-+ -++- | .. .-.+.++..+..
T Consensus 363 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g--------g~~e~v~~-~~~~~~~~~G~~~~~~~~~--- 430 (476)
T cd03791 363 LAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG--------GLADTVID-YNEDTGEGTGFVFEGYNAD--- 430 (476)
T ss_pred HHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC--------CccceEeC-CcCCCCCCCeEEeCCCCHH---
Confidence 34567889999999987666666789999999988654332 2222 3 22 145666766655
Q ss_pred ccHHHHHcCC-----CHHHHHHHHHHHH
Q 012984 386 LKIVDVLMSI-----PNAKVRRMRERVI 408 (452)
Q Consensus 386 ~~l~~iL~~I-----~~~~i~~Mq~~l~ 408 (452)
.|.+.|..+ .+++..+|.++..
T Consensus 431 -~l~~~i~~~l~~~~~~~~~~~~~~~~~ 457 (476)
T cd03791 431 -ALLAALRRALALYRDPEAWRKLQRNAM 457 (476)
T ss_pred -HHHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence 555544432 2566777777654
No 54
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=77.14 E-value=2.4 Score=45.22 Aligned_cols=95 Identities=11% Similarity=0.046 Sum_probs=58.7
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCC-----CceEEEeecCccccccc
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMY-----DEFSVFIPKEDVVFKGL 386 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w-----~~fsV~I~e~dv~~~~~ 386 (452)
..+..+.|+.+...+.|.-.......++|||++|| |||.+|...-. ++--+ . ....+.++..|..
T Consensus 361 ~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g~~~----elv~~-~~~~~~g~~G~lv~~~d~~---- 430 (475)
T cd03813 361 FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVGSCR----ELIEG-ADDEALGPAGEVVPPADPE---- 430 (475)
T ss_pred CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCCChH----HHhcC-CcccccCCceEEECCCCHH----
Confidence 34566788888888888643223345899999999 88888753110 11112 1 1366777877766
Q ss_pred cHHHHHcCC--CHHHHHHHHHHHHh-hcceeeE
Q 012984 387 KIVDVLMSI--PNAKVRRMRERVIE-LMPGVIY 416 (452)
Q Consensus 387 ~l~~iL~~I--~~~~i~~Mq~~l~~-v~~~f~Y 416 (452)
.+.+.|..+ .++...+|.++.++ +...|.|
T Consensus 431 ~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~ 463 (475)
T cd03813 431 ALARAILRLLKDPELRRAMGEAGRKRVERYYTL 463 (475)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCH
Confidence 454444433 47778888888775 3344444
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=76.63 E-value=6 Score=40.87 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=60.8
Q ss_pred cchhhcccccceEEecCCCCCC----CCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCcccccccc
Q 012984 312 PIRFMRPMLRATFCLQPPGDTP----TRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLK 387 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~----ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~ 387 (452)
..+..+.|+.|..++.|.=... ....++|||++| +|||.++.... .++-- -..-.+.++..|+. .
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G-~PVi~s~~~g~-----~~~~~-i~~~G~~~~~~d~~----~ 362 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASG-RNVVATAEPGT-----ELGQL-VEGIGVCVEPESVE----A 362 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcC-CCEEEEeCCCc-----hHHHH-HhCCcEEeCCCCHH----H
Confidence 3567788999998888743221 123488999999 59988864200 11110 11346667777776 6
Q ss_pred HHHHHcCC--CHHHHHHHHHHHHh-hcceeeEec
Q 012984 388 IVDVLMSI--PNAKVRRMRERVIE-LMPGVIYRR 418 (452)
Q Consensus 388 l~~iL~~I--~~~~i~~Mq~~l~~-v~~~f~Y~~ 418 (452)
+.+.|..+ .++...+|+++.++ +..+|.|..
T Consensus 363 la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 396 (412)
T PRK10307 363 LVAAIAALARQALLRPKLGTVAREYAERTLDKEN 396 (412)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 66666554 46678889888876 445677754
No 56
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=74.01 E-value=3.7 Score=40.74 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=33.1
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecC
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
..+..+.++++.++++|.-.......+.|||++|| |||.++.
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~-PvI~s~~ 298 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGL-PCILSDT 298 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCC-CEEEEcC
Confidence 34567889999999999866555667999999999 6666664
No 57
>PRK14099 glycogen synthase; Provisional
Probab=73.28 E-value=5.9 Score=42.57 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=56.8
Q ss_pred hhhccc-ccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC---CCCC--------ceEEEeecCcc
Q 012984 314 RFMRPM-LRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG---EMYD--------EFSVFIPKEDV 381 (452)
Q Consensus 314 ~y~~~m-~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf---D~w~--------~fsV~I~e~dv 381 (452)
+....+ +.|.+.+.|.=..+-.....|||++||+||+ ++-- -++- | .. .-.+.++..|.
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~G-------Gl~d~V~~-~~~~~~~~~~~~G~l~~~~d~ 431 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVG-------GLADTVVD-ANEMAIATGVATGVQFSPVTA 431 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCC-------Cccceeec-ccccccccCCCceEEeCCCCH
Confidence 444555 5688888887666555667899999999988 4321 1221 2 21 35677787776
Q ss_pred ccccccHHHHHcC----C-CHHHHHHHHHHHHhhcceeeEec
Q 012984 382 VFKGLKIVDVLMS----I-PNAKVRRMRERVIELMPGVIYRR 418 (452)
Q Consensus 382 ~~~~~~l~~iL~~----I-~~~~i~~Mq~~l~~v~~~f~Y~~ 418 (452)
. .|.+.|.. + .++...+|+++.. ...|.|..
T Consensus 432 ~----~La~ai~~a~~l~~d~~~~~~l~~~~~--~~~fSw~~ 467 (485)
T PRK14099 432 D----ALAAALRKTAALFADPVAWRRLQRNGM--TTDVSWRN 467 (485)
T ss_pred H----HHHHHHHHHHHHhcCHHHHHHHHHHhh--hhcCChHH
Confidence 6 56655543 1 4667788888764 35566644
No 58
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=72.55 E-value=3.4 Score=48.29 Aligned_cols=91 Identities=10% Similarity=0.040 Sum_probs=57.1
Q ss_pred hhhcccccc-----eEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccc
Q 012984 314 RFMRPMLRA-----TFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGL 386 (452)
Q Consensus 314 ~y~~~m~~S-----~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~ 386 (452)
+..+.|+.+ .|++-..-.+++ .-+.|||++|+ |||.++.- -++- . -..-.+.|+..|..
T Consensus 560 dvp~lYr~Ad~s~DVFV~PS~~EgFG-LvlLEAMAcGl-PVVASdvG-------G~~EII~-~g~nGlLVdP~D~e---- 625 (1050)
T TIGR02468 560 DVPDIYRLAAKTKGVFINPAFIEPFG-LTLIEAAAHGL-PMVATKNG-------GPVDIHR-VLDNGLLVDPHDQQ---- 625 (1050)
T ss_pred HHHHHHHHhhhcCCeeeCCcccCCCC-HHHHHHHHhCC-CEEEeCCC-------CcHHHhc-cCCcEEEECCCCHH----
Confidence 344555544 455533333344 34889999996 99999853 2221 1 13456778887776
Q ss_pred cHHHHHcCC--CHHHHHHHHHHHHhhcceeeEec
Q 012984 387 KIVDVLMSI--PNAKVRRMRERVIELMPGVIYRR 418 (452)
Q Consensus 387 ~l~~iL~~I--~~~~i~~Mq~~l~~v~~~f~Y~~ 418 (452)
.|-+.|..+ .++...+|.++..+..+.|.|..
T Consensus 626 aLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ 659 (1050)
T TIGR02468 626 AIADALLKLVADKQLWAECRQNGLKNIHLFSWPE 659 (1050)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHH
Confidence 555555433 46778899999887667777754
No 59
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=70.63 E-value=4.3 Score=30.23 Aligned_cols=24 Identities=46% Similarity=0.982 Sum_probs=13.9
Q ss_pred CCcccccch---------hHHHHHHHHHHHHhh
Q 012984 1 MACCKSSAA---------FHIITFFFFFVIFLK 24 (452)
Q Consensus 1 ~~~~~~~~~---------~~~~~~~~~~~~~~~ 24 (452)
|+||.|+.| .-|+.+.||+..+|.
T Consensus 1 m~c~rc~~~p~d~~~~lLiliis~~f~lI~~l~ 33 (61)
T PF06692_consen 1 MACCRCDSAPGDYSGPLLILIISFVFFLITSLG 33 (61)
T ss_pred CcccccCCCCccchhHHHHHHHHHHHHHHhhhc
Confidence 899887654 234455555544443
No 60
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=70.63 E-value=3.6 Score=42.40 Aligned_cols=96 Identities=8% Similarity=-0.017 Sum_probs=53.3
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccHH
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKIV 389 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l~ 389 (452)
..+..+.|+.+..++.|.-.......+.|||++|| |||.++.. ..+- + +...+.++. +..+-...|.
T Consensus 260 ~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~g-------g~~e~i~--~~~~~~~~~-~~~~l~~~l~ 328 (398)
T cd03796 260 HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVG-------GIPEVLP--PDMILLAEP-DVESIVRKLE 328 (398)
T ss_pred HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCC-------Cchhhee--CCceeecCC-CHHHHHHHHH
Confidence 35678889999999888644333346999999998 77777653 2222 1 112334433 4330011344
Q ss_pred HHHcCCCHHHHHHHHHHHHhhcceeeEecC
Q 012984 390 DVLMSIPNAKVRRMRERVIELMPGVIYRRH 419 (452)
Q Consensus 390 ~iL~~I~~~~i~~Mq~~l~~v~~~f~Y~~p 419 (452)
++|.. +.++...+++...++..+|.|...
T Consensus 329 ~~l~~-~~~~~~~~~~~~~~~~~~fs~~~~ 357 (398)
T cd03796 329 EAISI-LRTGKHDPWSFHNRVKKMYSWEDV 357 (398)
T ss_pred HHHhC-hhhhhhHHHHHHHHHHhhCCHHHH
Confidence 44443 222323334444557777777654
No 61
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=69.94 E-value=2.6 Score=42.76 Aligned_cols=71 Identities=10% Similarity=0.058 Sum_probs=42.5
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeec-CcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEE-QSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d-~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
.+.+.++.+..++.|.....-...++|||++| +|||.++ .... -++=-+ ..-.+.++..|+. .+.+.|
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g~----~eiv~~--~~~G~lv~~~d~~----~la~~i 318 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSGP----RDIIKP--GLNGELYTPGNID----EFVGKL 318 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCCh----HHHccC--CCceEEECCCCHH----HHHHHH
Confidence 34566777888888876533345699999999 5888888 3210 011112 2334566777776 555554
Q ss_pred cCC
Q 012984 393 MSI 395 (452)
Q Consensus 393 ~~I 395 (452)
..+
T Consensus 319 ~~l 321 (359)
T PRK09922 319 NKV 321 (359)
T ss_pred HHH
Confidence 443
No 62
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=69.50 E-value=19 Score=39.62 Aligned_cols=41 Identities=7% Similarity=-0.016 Sum_probs=31.8
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecC
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
.+..+.|+.+..++.|.-.......+.|||++|| |||.++.
T Consensus 464 ~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdv 504 (578)
T PRK15490 464 RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPA 504 (578)
T ss_pred hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCC
Confidence 3556678888888888655555566999999999 9999885
No 63
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=68.19 E-value=5 Score=36.38 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=32.0
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecC
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
...+...++.|..++.|.........++|||.+|| |||.++.
T Consensus 172 ~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~-pvi~s~~ 213 (229)
T cd01635 172 EELLALLLAAADVFVLPSLREGFGLVVLEAMACGL-PVIATDV 213 (229)
T ss_pred HHHHHHHhhcCCEEEecccccCcChHHHHHHhCCC-CEEEcCC
Confidence 34455666669999999887666777999999987 6666665
No 64
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=67.93 E-value=4.9 Score=44.12 Aligned_cols=117 Identities=10% Similarity=0.105 Sum_probs=65.4
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccc---cccHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFK---GLKIV 389 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~---~~~l~ 389 (452)
..|.+.++.+..++.|.-..+...-..|||++|+ |||.++......+.-+.--+ -.+..|.|...+..+- -..|.
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~-PvI~t~~~gf~~~v~E~v~~-~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGI-PSITTNLSGFGCFMEEHIED-PESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcCC-CEEEccCcchhhhhHHHhcc-CCCceEEEecCCccchHHHHHHHH
Confidence 4688999999999999866554445789999995 99999875211010011113 3356788873222100 00333
Q ss_pred HHHcC---CCHHHHHHHHHHHHhhcceeeEecCCcccccCCcccHHHHHH
Q 012984 390 DVLMS---IPNAKVRRMRERVIELMPGVIYRRHESTLGLKAKKDAFDIAI 436 (452)
Q Consensus 390 ~iL~~---I~~~~i~~Mq~~l~~v~~~f~Y~~p~~~~~~~~~~DAf~~~~ 436 (452)
+.|.. -+..+....|....+....|.|..-..- ...|.+.++
T Consensus 544 ~~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~-----Y~~A~~~Al 588 (590)
T cd03793 544 QYMYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRY-----YRKARQLAL 588 (590)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHh
Confidence 33333 2334444444444478888888764221 135665554
No 65
>PLN02939 transferase, transferring glycosyl groups
Probab=66.64 E-value=18 Score=42.07 Aligned_cols=91 Identities=8% Similarity=0.045 Sum_probs=56.0
Q ss_pred hcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCC--------ceEEEeecCcccccccc
Q 012984 316 MRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYD--------EFSVFIPKEDVVFKGLK 387 (452)
Q Consensus 316 ~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~--------~fsV~I~e~dv~~~~~~ 387 (452)
...++.|.+++.|.=..+..-...|||++||+||+..-+-. -+.-.| ++ .-.+.++..+.. .
T Consensus 851 h~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL-----~DtV~d-~d~e~i~~eg~NGfLf~~~D~e----a 920 (977)
T PLN02939 851 HSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGL-----NDSVFD-FDDETIPVELRNGFTFLTPDEQ----G 920 (977)
T ss_pred HHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCC-----cceeec-CCccccccCCCceEEecCCCHH----H
Confidence 35789999999998666666668899999999987643310 011112 21 234556666655 4
Q ss_pred HHHHHcC----C--CHHHHHHHHHHHHhhcceeeEec
Q 012984 388 IVDVLMS----I--PNAKVRRMRERVIELMPGVIYRR 418 (452)
Q Consensus 388 l~~iL~~----I--~~~~i~~Mq~~l~~v~~~f~Y~~ 418 (452)
|.+.|.. + .++.+.+|+++. +...|.|..
T Consensus 921 La~AL~rAL~~~~~dpe~~~~L~~~a--m~~dFSWe~ 955 (977)
T PLN02939 921 LNSALERAFNYYKRKPEVWKQLVQKD--MNIDFSWDS 955 (977)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHH--HHhcCCHHH
Confidence 4444332 2 477788887754 335666644
No 66
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=66.48 E-value=47 Score=35.88 Aligned_cols=91 Identities=12% Similarity=0.177 Sum_probs=50.8
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC---CCCCceEEEeec----Cc----cc
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG---EMYDEFSVFIPK----ED----VV 382 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf---D~w~~fsV~I~e----~d----v~ 382 (452)
+..+.++.+.-++.|.=...-...+.|||++|| |||.+|-. +-.|- | ..-.+.++. .+ +.
T Consensus 385 ~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~------~G~~eiI~~--g~nG~lv~~~~~~~d~~~~~~ 455 (500)
T TIGR02918 385 NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVN------YGNPTFIED--NKNGYLIPIDEEEDDEDQIIT 455 (500)
T ss_pred CHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCC------CCCHHHccC--CCCEEEEeCCccccchhHHHH
Confidence 345667777766666533233345899999998 88887731 01221 2 222344441 22 22
Q ss_pred cccccHHHHHcCCCHHHHHHHHHHHHhhcceeeE
Q 012984 383 FKGLKIVDVLMSIPNAKVRRMRERVIELMPGVIY 416 (452)
Q Consensus 383 ~~~~~l~~iL~~I~~~~i~~Mq~~l~~v~~~f~Y 416 (452)
.-...|..+| .++++.+|.++..+....|.|
T Consensus 456 ~la~~I~~ll---~~~~~~~~~~~a~~~a~~fs~ 486 (500)
T TIGR02918 456 ALAEKIVEYF---NSNDIDAFHEYSYQIAEGFLT 486 (500)
T ss_pred HHHHHHHHHh---ChHHHHHHHHHHHHHHHhcCH
Confidence 0000234444 366788999999887776655
No 67
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=64.31 E-value=63 Score=33.50 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=51.7
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCCCCCCceEEEeecCccccccccHHHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
.+..+.+.++++-+.-+=+..---++.|+|++|-|||.=..+-. -.--..|.| - +-.=+..+++.. =...+.+|+
T Consensus 348 ~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP--~lDIV~~~~-G-~~tGFla~t~~E-YaE~iLkIv 422 (465)
T KOG1387|consen 348 EKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGP--LLDIVTPWD-G-ETTGFLAPTDEE-YAEAILKIV 422 (465)
T ss_pred HHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCC--ceeeeeccC-C-ccceeecCChHH-HHHHHHHHH
Confidence 34567888999988876555444569999999999976543310 011134443 1 112233333332 001344444
Q ss_pred cCCCHHHHHHHHHHHHhhc
Q 012984 393 MSIPNAKVRRMRERVIELM 411 (452)
Q Consensus 393 ~~I~~~~i~~Mq~~l~~v~ 411 (452)
.. ..++...||++.+.-.
T Consensus 423 ~~-~~~~r~~~r~~AR~s~ 440 (465)
T KOG1387|consen 423 KL-NYDERNMMRRNARKSL 440 (465)
T ss_pred Hc-CHHHHHHHHHHHHHHH
Confidence 43 4566788888876433
No 68
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=63.41 E-value=12 Score=39.00 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=49.4
Q ss_pred hhhcccccc--eEEecCC-CCCCCCchHHHHHhhCceeEEeecCcccccccccCCC---CCCCceEEEeec-Cccccccc
Q 012984 314 RFMRPMLRA--TFCLQPP-GDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG---EMYDEFSVFIPK-EDVVFKGL 386 (452)
Q Consensus 314 ~y~~~m~~S--~FCL~P~-Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf---D~w~~fsV~I~e-~dv~~~~~ 386 (452)
+..+.++.+ .....|. ..+. .-.+.|||++|+ |||.++-. -.|- | ..-.+.++. .+..
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~-p~~llEAma~G~-PVIas~vg-------g~~e~i~~--~~~G~l~~~~~~~~---- 365 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGL-PVSIMEAMSFGI-PVIATNVG-------GTPEIVDN--GGNGLLLSKDPTPN---- 365 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccc-cHHHHHHHHcCC-CEEeCCCC-------CcHHHhcC--CCcEEEeCCCCCHH----
Confidence 445566543 2222333 3333 345899999995 99988753 2222 3 223445554 3444
Q ss_pred cHHHHHcCC--CHHHHHHHHHHHHhhc-ceeeE
Q 012984 387 KIVDVLMSI--PNAKVRRMRERVIELM-PGVIY 416 (452)
Q Consensus 387 ~l~~iL~~I--~~~~i~~Mq~~l~~v~-~~f~Y 416 (452)
.+.+.|..+ .+++..+|+++.++.+ .+|-+
T Consensus 366 ~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~ 398 (407)
T cd04946 366 ELVSSLSKFIDNEEEYQTMREKAREKWEENFNA 398 (407)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH
Confidence 344444333 5788899998887643 45544
No 69
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=60.34 E-value=13 Score=37.02 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=48.7
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcc--cccccccCCC-CCCCceEEEeecCc--cccccccH
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSA--KSQYVWHLPG-EMYDEFSVFIPKED--VVFKGLKI 388 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~--~~qy~w~LPf-D~w~~fsV~I~e~d--v~~~~~~l 388 (452)
++.+.|..+..++.+.| ...++|||++|+ |||+.+... ..|.. .-.+ . -....+.++..+ .. .|
T Consensus 243 ~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~-~~~~i~-~~~~G~~~~~~~~~~~----~l 311 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG----ASTVAELAAAGV-PAILIPYPYAADDQYY-NAKFLE-DLGAGLVIRQKELLPE----KL 311 (348)
T ss_pred CHHHHHHhCCEEEECCC----hhHHHHHHHcCC-CEEEeeCCCCccchhh-HHHHHH-HCCCEEEEecccCCHH----HH
Confidence 67889999999998876 234889999997 888764310 00000 0001 1 123445565544 33 33
Q ss_pred HHHHcCC--CHHHHHHHHHHHHh
Q 012984 389 VDVLMSI--PNAKVRRMRERVIE 409 (452)
Q Consensus 389 ~~iL~~I--~~~~i~~Mq~~l~~ 409 (452)
.+.|+.+ .++...+|.++.++
T Consensus 312 ~~~i~~ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 312 LEALLKLLLDPANLEAMAEAARK 334 (348)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHh
Confidence 3333221 46777888887753
No 70
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=58.42 E-value=9.8 Score=39.17 Aligned_cols=82 Identities=15% Similarity=0.259 Sum_probs=47.5
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccHHHH
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKIVDV 391 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l~~i 391 (452)
+..+.|+.|...+.++|. . .+.|||.+|+ |||+.+.+. -|-.-..++ + ....+.+ .+.. .|.+.
T Consensus 275 ~~~~l~~aaDv~V~~~g~--~--ti~EAma~g~-PvI~~~~~p-gqe~gn~~~i~~--~g~g~~~--~~~~----~la~~ 340 (382)
T PLN02605 275 NMEEWMGACDCIITKAGP--G--TIAEALIRGL-PIILNGYIP-GQEEGNVPYVVD--NGFGAFS--ESPK----EIARI 340 (382)
T ss_pred cHHHHHHhCCEEEECCCc--c--hHHHHHHcCC-CEEEecCCC-ccchhhHHHHHh--CCceeec--CCHH----HHHHH
Confidence 567889999988887762 2 3789999998 888877320 000011222 2 2334443 2333 34443
Q ss_pred HcCC---CHHHHHHHHHHHHh
Q 012984 392 LMSI---PNAKVRRMRERVIE 409 (452)
Q Consensus 392 L~~I---~~~~i~~Mq~~l~~ 409 (452)
+..+ .++...+|+++.++
T Consensus 341 i~~ll~~~~~~~~~m~~~~~~ 361 (382)
T PLN02605 341 VAEWFGDKSDELEAMSENALK 361 (382)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 3322 36778888888753
No 71
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=58.03 E-value=13 Score=42.53 Aligned_cols=85 Identities=7% Similarity=0.051 Sum_probs=53.8
Q ss_pred eEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccHHHHHcC------
Q 012984 323 TFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKIVDVLMS------ 394 (452)
Q Consensus 323 ~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l~~iL~~------ 394 (452)
..+++|.=..+--..+.|||++|+ |||.++.- -++. . -..-.+.|+..|.. .+-+.|..
T Consensus 645 dVfV~PS~~EpFGLvvLEAMAcGl-PVVAT~~G-------G~~EiV~-dg~tGfLVdp~D~e----aLA~aL~~ll~kll 711 (784)
T TIGR02470 645 GIFVQPALYEAFGLTVLEAMTCGL-PTFATRFG-------GPLEIIQ-DGVSGFHIDPYHGE----EAAEKIVDFFEKCD 711 (784)
T ss_pred cEEEECCcccCCCHHHHHHHHcCC-CEEEcCCC-------CHHHHhc-CCCcEEEeCCCCHH----HHHHHHHHHHHHhc
Confidence 345556555544555889999998 66666542 1222 1 13456677877766 55554443
Q ss_pred CCHHHHHHHHHHHH-hhcceeeEecCC
Q 012984 395 IPNAKVRRMRERVI-ELMPGVIYRRHE 420 (452)
Q Consensus 395 I~~~~i~~Mq~~l~-~v~~~f~Y~~p~ 420 (452)
-.++.+.+|.++.+ ++..+|.|....
T Consensus 712 ~dp~~~~~ms~~a~~rV~~~FSW~~~A 738 (784)
T TIGR02470 712 EDPSYWQKISQGGLQRIYEKYTWKIYS 738 (784)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 25778888888865 477899987643
No 72
>PHA01633 putative glycosyl transferase group 1
Probab=55.20 E-value=9.2 Score=39.23 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=32.4
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecC
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
.+..+.++.|.+-+.|.-...-..-+.|||++|| |||.++-
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~ 255 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLM 255 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccC
Confidence 4567889999988888755444455889999999 9998865
No 73
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=54.46 E-value=24 Score=35.13 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=49.5
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcc---cccccccCCCCCCCceEEEeecC--cccccccc
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSA---KSQYVWHLPGEMYDEFSVFIPKE--DVVFKGLK 387 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~---~~qy~w~LPfD~w~~fsV~I~e~--dv~~~~~~ 387 (452)
.++.+.|+.+.+.+.+.|. ..+.|||.+|+ |||+.+... ..|........ -....+.++.. +.. .
T Consensus 244 ~~~~~~l~~ad~~v~~sg~----~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~~~l~-~~g~g~~v~~~~~~~~----~ 313 (350)
T cd03785 244 DDMAAAYAAADLVISRAGA----STVAELAALGL-PAILIPLPYAADDHQTANARALV-KAGAAVLIPQEELTPE----R 313 (350)
T ss_pred hhHHHHHHhcCEEEECCCH----hHHHHHHHhCC-CEEEeecCCCCCCcHHHhHHHHH-hCCCEEEEecCCCCHH----H
Confidence 4677888999998887762 34889999997 666654210 00000000011 12345666654 444 4
Q ss_pred HHHHHcCC--CHHHHHHHHHHHHhh
Q 012984 388 IVDVLMSI--PNAKVRRMRERVIEL 410 (452)
Q Consensus 388 l~~iL~~I--~~~~i~~Mq~~l~~v 410 (452)
|.+.|+.+ .++...+|+++.++.
T Consensus 314 l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 314 LAAALLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 44444332 467778888877543
No 74
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=53.11 E-value=22 Score=37.02 Aligned_cols=106 Identities=8% Similarity=0.002 Sum_probs=57.4
Q ss_pred chhhcccccceEEecCCCC--CCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccH
Q 012984 313 IRFMRPMLRATFCLQPPGD--TPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKI 388 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd--~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l 388 (452)
.+..+.++.+..++++... +. ...+.|||++|| |||.++...-.. ++.- . -..+.+ +..|.. .|
T Consensus 311 ~el~~~y~~aDi~~v~~S~~e~~-g~~~lEAma~G~-PVI~g~~~~~~~---e~~~~~~-~~g~~~--~~~d~~----~L 378 (425)
T PRK05749 311 GELGLLYAIADIAFVGGSLVKRG-GHNPLEPAAFGV-PVISGPHTFNFK---EIFERLL-QAGAAI--QVEDAE----DL 378 (425)
T ss_pred HHHHHHHHhCCEEEECCCcCCCC-CCCHHHHHHhCC-CEEECCCccCHH---HHHHHHH-HCCCeE--EECCHH----HH
Confidence 3567888889876664321 22 223889999997 999887531000 0110 1 122333 333433 34
Q ss_pred HHHHcCC--CHHHHHHHHHHHHhhcceeeEecCCcccccCCcccHHHHHHHHHHHHhh
Q 012984 389 VDVLMSI--PNAKVRRMRERVIELMPGVIYRRHESTLGLKAKKDAFDIAIEGTLERIR 444 (452)
Q Consensus 389 ~~iL~~I--~~~~i~~Mq~~l~~v~~~f~Y~~p~~~~~~~~~~DAf~~~~~~l~~Ri~ 444 (452)
.+.|..+ .++...+|.++.++..... .+|.+.+++.+.+-+.
T Consensus 379 a~~l~~ll~~~~~~~~m~~~a~~~~~~~--------------~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 379 AKAVTYLLTDPDARQAYGEAGVAFLKQN--------------QGALQRTLQLLEPYLP 422 (425)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHhcc
Confidence 4433322 4677788888876544221 2466677766655443
No 75
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=45.13 E-value=18 Score=37.11 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=30.0
Q ss_pred chhhcccccceEEecCCCCC-----CCCchHHHHHhhCceeEEeec
Q 012984 313 IRFMRPMLRATFCLQPPGDT-----PTRRSTFDGFLAGCIPVFFEE 353 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~-----~ssrrl~DAi~~GCIPVii~d 353 (452)
.+..+.|+.+..|+.|--.. -....++|+|++|+ |||.++
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~ 309 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP 309 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC
Confidence 56778899999999986432 22334999999997 888665
No 76
>PLN02316 synthase/transferase
Probab=42.75 E-value=30 Score=40.82 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=32.1
Q ss_pred cccccceEEecCCCCCCCCchHHHHHhhCceeEEeecC
Q 012984 317 RPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 317 ~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
..++.+.+.|.|.=..+-.....+||++||+||+-.-+
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG 952 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG 952 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC
Confidence 57999999999987777777788999999999986543
No 77
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=40.97 E-value=17 Score=38.67 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=55.2
Q ss_pred cchhhcccccceEEecCC-CCCCCCchHHHHHhhCce---eEEeecCcccccccccCCCCCCCceEEEeecCcccccccc
Q 012984 312 PIRFMRPMLRATFCLQPP-GDTPTRRSTFDGFLAGCI---PVFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGLK 387 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~-Gd~~ssrrl~DAi~~GCI---PVii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~~ 387 (452)
..+..+.|+.+.-++.|. -++.+-- ..|||++||= |||+++... .+- -..-.+.|+..|+. .
T Consensus 351 ~~el~~~y~~aDv~v~pS~~Eg~~lv-~lEAma~g~p~~g~vV~S~~~G-------~~~--~~~~g~lv~p~d~~----~ 416 (460)
T cd03788 351 REELAALYRAADVALVTPLRDGMNLV-AKEYVACQDDDPGVLILSEFAG-------AAE--ELSGALLVNPYDID----E 416 (460)
T ss_pred HHHHHHHHHhccEEEeCccccccCcc-cceeEEEecCCCceEEEecccc-------chh--hcCCCEEECCCCHH----H
Confidence 456778888888888765 3454443 6699999995 599997531 111 11235677777766 4
Q ss_pred HHHHHc---CCCHHHHHHHHHHHHhhcce
Q 012984 388 IVDVLM---SIPNAKVRRMRERVIELMPG 413 (452)
Q Consensus 388 l~~iL~---~I~~~~i~~Mq~~l~~v~~~ 413 (452)
+.+.|. ..++++..+|.++.++....
T Consensus 417 la~ai~~~l~~~~~e~~~~~~~~~~~v~~ 445 (460)
T cd03788 417 VADAIHRALTMPLEERRERHRKLREYVRT 445 (460)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 544443 23667777777766655433
No 78
>PRK10125 putative glycosyl transferase; Provisional
Probab=39.04 E-value=54 Score=34.24 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=42.9
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccHHH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKIVD 390 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l~~ 390 (452)
.+..+.|+.+...+.|.-.......+.|||++|| |||.+|-- -.|- + - .-.+.++..|+. .|.+
T Consensus 298 ~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~-PVVat~~g-------G~~Eiv~-~-~~G~lv~~~d~~----~La~ 363 (405)
T PRK10125 298 RKLMSALNQMDALVFSSRVDNYPLILCEALSIGV-PVIATHSD-------AAREVLQ-K-SGGKTVSEEEVL----QLAQ 363 (405)
T ss_pred HHHHHHHHhCCEEEECCccccCcCHHHHHHHcCC-CEEEeCCC-------ChHHhEe-C-CcEEEECCCCHH----HHHh
Confidence 4566777778777777654444455889999996 99998753 2332 3 1 246778888877 5655
No 79
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=38.54 E-value=23 Score=29.54 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=22.4
Q ss_pred cCCccchHHHHHhhhcCCc-cCCCCCCccEEEEc
Q 012984 93 TDPLLLELIFHRRILEYPC-LTQDPASANAVYVP 125 (452)
Q Consensus 93 t~~y~~E~~fhe~L~~s~~-rT~dP~eAd~FyVP 125 (452)
.+++..|.+ -..|.+.++ .|.+|++||+++|=
T Consensus 11 ~N~~Dse~i-~~~l~~~G~~~~~~~e~AD~iiiN 43 (98)
T PF00919_consen 11 MNQYDSERI-ASILQAAGYEIVDDPEEADVIIIN 43 (98)
T ss_pred ccHHHHHHH-HHHHHhcCCeeecccccCCEEEEE
Confidence 456777753 345555554 89999999998773
No 80
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=38.42 E-value=39 Score=34.96 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=48.8
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC-CCCCceEEEeecCccccccccHHHHH
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG-EMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf-D~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
+..+.|+.|.+++..+|. ..+.|||.+|+ |||+.+... .|-...--+ . =..+++.+. +.. .+.+.|
T Consensus 266 ~~~~~~~~aDl~I~k~gg----~tl~EA~a~G~-PvI~~~~~p-gqe~~N~~~~~-~~G~g~~~~--~~~----~l~~~i 332 (391)
T PRK13608 266 HMNEWMASSQLMITKPGG----ITISEGLARCI-PMIFLNPAP-GQELENALYFE-EKGFGKIAD--TPE----EAIKIV 332 (391)
T ss_pred hHHHHHHhhhEEEeCCch----HHHHHHHHhCC-CEEECCCCC-CcchhHHHHHH-hCCcEEEeC--CHH----HHHHHH
Confidence 466789999999875542 24889999997 998876421 000000000 0 123444332 222 333333
Q ss_pred cCC--CHHHHHHHHHHHHhhcc
Q 012984 393 MSI--PNAKVRRMRERVIELMP 412 (452)
Q Consensus 393 ~~I--~~~~i~~Mq~~l~~v~~ 412 (452)
..+ .++++.+|+++..+..+
T Consensus 333 ~~ll~~~~~~~~m~~~~~~~~~ 354 (391)
T PRK13608 333 ASLTNGNEQLTNMISTMEQDKI 354 (391)
T ss_pred HHHhcCHHHHHHHHHHHHHhcC
Confidence 322 47888999999976544
No 81
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=38.27 E-value=21 Score=30.14 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=27.7
Q ss_pred chhhcccccceEEecCCC-CCCCCchHHHHHhhCceeEEeecC
Q 012984 313 IRFMRPMLRATFCLQPPG-DTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~G-d~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
.++.+.|+++.+++.|.- +.-.+..++|+|.+|| |||.++.
T Consensus 62 ~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~ 103 (135)
T PF13692_consen 62 EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN 103 (135)
T ss_dssp HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH
T ss_pred HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc
Confidence 478999999999999863 2234456999999998 6666665
No 82
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=38.22 E-value=43 Score=35.75 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=53.0
Q ss_pred cchhhcccccceEEecCC-CCCCCCchHHHHHhhCcee----EEeecCcccccccccCCCCCCCceEEEeecCccccccc
Q 012984 312 PIRFMRPMLRATFCLQPP-GDTPTRRSTFDGFLAGCIP----VFFEEQSAKSQYVWHLPGEMYDEFSVFIPKEDVVFKGL 386 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~-Gd~~ssrrl~DAi~~GCIP----Vii~d~~~~~qy~w~LPfD~w~~fsV~I~e~dv~~~~~ 386 (452)
..+..+.++.+.-|+.|+ .+|.+-- ..|||++|+ | ||+++... .+-. -. -++.|+..|..
T Consensus 346 ~~el~aly~aaDv~vv~S~~EG~~Lv-~lEamA~g~-P~~g~vVlS~~~G-------~~~~-l~-~gllVnP~d~~---- 410 (456)
T TIGR02400 346 REELMALYRAADVGLVTPLRDGMNLV-AKEYVAAQD-PKDGVLILSEFAG-------AAQE-LN-GALLVNPYDID---- 410 (456)
T ss_pred HHHHHHHHHhCcEEEECccccccCcc-HHHHHHhcC-CCCceEEEeCCCC-------ChHH-hC-CcEEECCCCHH----
Confidence 467788899998888865 4555544 679999996 8 89998531 1111 11 26777887776
Q ss_pred cHHHHHc---CCCHHHHHHHHHHHHh
Q 012984 387 KIVDVLM---SIPNAKVRRMRERVIE 409 (452)
Q Consensus 387 ~l~~iL~---~I~~~~i~~Mq~~l~~ 409 (452)
.+-+.|. ..++++..++.+++++
T Consensus 411 ~lA~aI~~aL~~~~~er~~r~~~~~~ 436 (456)
T TIGR02400 411 GMADAIARALTMPLEEREERHRAMMD 436 (456)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4554443 2366666555555544
No 83
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=38.06 E-value=25 Score=35.70 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=27.5
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCc
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQS 355 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~ 355 (452)
+..+.|+.|...+.+.|. ...||+.+|| |||+...+
T Consensus 254 ~~~~~~~~aDl~v~~sG~-----~~lEa~a~G~-PvI~~~~~ 289 (380)
T PRK00025 254 QKREAMAAADAALAASGT-----VTLELALLKV-PMVVGYKV 289 (380)
T ss_pred cHHHHHHhCCEEEECccH-----HHHHHHHhCC-CEEEEEcc
Confidence 457788899999988652 3459999997 88888664
No 84
>PLN00142 sucrose synthase
Probab=37.89 E-value=40 Score=38.76 Aligned_cols=91 Identities=9% Similarity=0.017 Sum_probs=53.9
Q ss_pred ccccc-ceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC--CCCCceEEEeecCccccccccHHHHH-
Q 012984 317 RPMLR-ATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG--EMYDEFSVFIPKEDVVFKGLKIVDVL- 392 (452)
Q Consensus 317 ~~m~~-S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf--D~w~~fsV~I~e~dv~~~~~~l~~iL- 392 (452)
..++. +...++|.=...-...+.|||++|+ |||.++.- -++. . -..-.+.|+..|.. .+-+.|
T Consensus 661 r~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvG-------G~~EIV~-dG~tG~LV~P~D~e----aLA~aI~ 727 (815)
T PLN00142 661 RYIADTKGAFVQPALYEAFGLTVVEAMTCGL-PTFATCQG-------GPAEIIV-DGVSGFHIDPYHGD----EAANKIA 727 (815)
T ss_pred HHHHhhCCEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCC-------CHHHHhc-CCCcEEEeCCCCHH----HHHHHHH
Confidence 33443 3344556544444445889999997 88887753 2222 1 13456677777765 443333
Q ss_pred ---cC--CCHHHHHHHHHHHH-hhcceeeEecCC
Q 012984 393 ---MS--IPNAKVRRMRERVI-ELMPGVIYRRHE 420 (452)
Q Consensus 393 ---~~--I~~~~i~~Mq~~l~-~v~~~f~Y~~p~ 420 (452)
.. -.++...+|.++.+ ++..+|.|....
T Consensus 728 ~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A 761 (815)
T PLN00142 728 DFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYA 761 (815)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 22 25778888888864 466888887643
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.39 E-value=1e+02 Score=34.94 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=29.4
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecC
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
+....|+.+...+.|.-.......+.|||.+|+ |||.++.
T Consensus 584 dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~ 623 (694)
T PRK15179 584 RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLA 623 (694)
T ss_pred hHHHHHHhcCEEEeccccccchHHHHHHHHcCC-eEEEECC
Confidence 456677777777777544444566999999996 8888875
No 86
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=36.47 E-value=1.4e+02 Score=29.27 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=55.3
Q ss_pred CCCCCceEEEEecCCCCCCCchHHHHHHHHHhhcCCCchhhhcCCCCcccceeEEeccCCCcccC------Ccchhhccc
Q 012984 246 RNSRRSTLMLFAGGGGVGANPNIRRSIRNECKSNHSSEVVAAAGGGGHFNKVCDIVDCSNGICEH------DPIRFMRPM 319 (452)
Q Consensus 246 ~~~~R~~L~~F~G~~~~~~~~~iR~~L~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~c~~------~~~~y~~~m 319 (452)
+=..|.-.++|+|+...+ ..|+.|++... + .++. + +-.+.. .+..+.|.. ....-.+..
T Consensus 79 pW~~K~~~a~WRG~~~~~---~~R~~Lv~~~~-~-~p~~--------~-da~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 143 (256)
T smart00672 79 KWSDKNAYAYWRGNPTVA---SERLDLIKCNQ-S-SPEL--------V-NARITI-QDWPGKCDGEEDAPGFKKSPLEEQ 143 (256)
T ss_pred CccccCcCccccCCCCCC---cchHHHHHHhc-C-Cccc--------c-eeEEEE-ecCCCCChHHhcccCcCCCCHHHH
Confidence 445677789999987432 28999998765 4 3331 1 000111 122222310 011123444
Q ss_pred ccceEEecCCCCCCCCchHHHHHhhCceeEEeecC
Q 012984 320 LRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 320 ~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
.+-||=+..-|.+++.+ |.=-|.+++|++.....
T Consensus 144 ~~yKyli~~dG~~~S~r-l~~~l~~~Svvl~~~~~ 177 (256)
T smart00672 144 CKHKYKINIEGVAWSVR-LKYILACDSVVLKVKPE 177 (256)
T ss_pred hhcceEEecCCccchhh-HHHHHhcCceEEEeCCc
Confidence 57788899999988876 77788999998777643
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=35.41 E-value=2.2e+02 Score=28.73 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=28.2
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecC
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
..++...|+.+.+.+.+.|. -+.||+.+|+ |||....
T Consensus 265 ~~~~~~~l~~ad~vv~~Sg~-----~~~EA~a~g~-PvI~~~~ 301 (365)
T TIGR00236 265 YLDFLNLAANSHLILTDSGG-----VQEEAPSLGK-PVLVLRD 301 (365)
T ss_pred hHHHHHHHHhCCEEEECChh-----HHHHHHHcCC-CEEECCC
Confidence 45677889999998877653 2679999987 8888643
No 88
>PLN02275 transferase, transferring glycosyl groups
Probab=35.23 E-value=1.1e+02 Score=31.34 Aligned_cols=41 Identities=17% Similarity=0.055 Sum_probs=30.2
Q ss_pred cchhhcccccceEEecCC----CCCCCCchHHHHHhhCceeEEeecC
Q 012984 312 PIRFMRPMLRATFCLQPP----GDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~----Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
..++.+.|+.+..++.|. |.+. ...++|||++|+ |||.++.
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~-p~~llEAmA~G~-PVVa~~~ 341 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDL-PMKVVDMFGCGL-PVCAVSY 341 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccc-cHHHHHHHHCCC-CEEEecC
Confidence 467788899999887653 2222 345899999997 9988874
No 89
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=32.84 E-value=70 Score=32.54 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=44.3
Q ss_pred hhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCcccccccccCCC-CCCCceEEEeecCccccccccHHHHH
Q 012984 314 RFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQSAKSQYVWHLPG-EMYDEFSVFIPKEDVVFKGLKIVDVL 392 (452)
Q Consensus 314 ~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~~~~qy~w~LPf-D~w~~fsV~I~e~dv~~~~~~l~~iL 392 (452)
+..+.|+.|...+..+| ...+.|||++|+ |||+.+...-.+. ...-+ . -..+.+.+ .+.. .|.+.|
T Consensus 266 ~~~~l~~~aD~~v~~~g----g~t~~EA~a~g~-PvI~~~~~~g~~~-~n~~~~~-~~G~~~~~--~~~~----~l~~~i 332 (380)
T PRK13609 266 NIDELFRVTSCMITKPG----GITLSEAAALGV-PVILYKPVPGQEK-ENAMYFE-RKGAAVVI--RDDE----EVFAKT 332 (380)
T ss_pred hHHHHHHhccEEEeCCC----chHHHHHHHhCC-CEEECCCCCCcch-HHHHHHH-hCCcEEEE--CCHH----HHHHHH
Confidence 45678888886655444 234789999997 6888653210000 00000 1 12334433 3333 344433
Q ss_pred cCC--CHHHHHHHHHHHHh
Q 012984 393 MSI--PNAKVRRMRERVIE 409 (452)
Q Consensus 393 ~~I--~~~~i~~Mq~~l~~ 409 (452)
..+ .++.+.+|+++..+
T Consensus 333 ~~ll~~~~~~~~m~~~~~~ 351 (380)
T PRK13609 333 EALLQDDMKLLQMKEAMKS 351 (380)
T ss_pred HHHHCCHHHHHHHHHHHHH
Confidence 322 46788899888865
No 90
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=30.57 E-value=76 Score=31.86 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=48.6
Q ss_pred chhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecCc---ccccccccCCC-CCCCceEEEeecCccccccccH
Q 012984 313 IRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQS---AKSQYVWHLPG-EMYDEFSVFIPKEDVVFKGLKI 388 (452)
Q Consensus 313 ~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~~---~~~qy~w~LPf-D~w~~fsV~I~e~dv~~~~~~l 388 (452)
.++.+.|..+..++...| ...++|||++|+ |||+.+.. ...|...-.-. + ....+.++.+++. .. .|
T Consensus 244 ~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~~i~~--~~~g~~~~~~~~~-~~-~l 314 (357)
T PRK00726 244 DDMAAAYAAADLVICRAG----ASTVAELAAAGL-PAILVPLPHAADDHQTANARALVD--AGAALLIPQSDLT-PE-KL 314 (357)
T ss_pred hhHHHHHHhCCEEEECCC----HHHHHHHHHhCC-CEEEecCCCCCcCcHHHHHHHHHH--CCCEEEEEcccCC-HH-HH
Confidence 367789999999998776 234889999997 66654321 00000000001 2 2346677766631 11 44
Q ss_pred HHHHcCC--CHHHHHHHHHHHH
Q 012984 389 VDVLMSI--PNAKVRRMRERVI 408 (452)
Q Consensus 389 ~~iL~~I--~~~~i~~Mq~~l~ 408 (452)
.+.++.+ .++...+|+++.+
T Consensus 315 ~~~i~~ll~~~~~~~~~~~~~~ 336 (357)
T PRK00726 315 AEKLLELLSDPERLEAMAEAAR 336 (357)
T ss_pred HHHHHHHHcCHHHHHHHHHHHH
Confidence 4443332 3667788888764
No 91
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=30.02 E-value=77 Score=25.83 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhccccccccccCCCCCCCCeEEEeCCC
Q 012984 14 TFFFFFVIFLKLDLSYQISTVESEDCTNRWIYVRWLP 50 (452)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~IyvYdLP 50 (452)
-|+||..+++.-.|+.|....+...+.++++.-..||
T Consensus 51 ~~lF~iL~~ms~sgspq~~~~~k~~~~~p~~~~~~lp 87 (90)
T PF15183_consen 51 VFLFLILLYMSWSGSPQMRNSEKHHPMCPWSHSLGLP 87 (90)
T ss_pred HHHHHHHHHHhccCCCCcCCccccCCCCCcccccCCC
Confidence 3556677888888988886666666777766655555
No 92
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=25.99 E-value=2.6e+02 Score=28.28 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=29.8
Q ss_pred cchhhcccccceEEecCCCCCCCCchHHHHHhhCceeEEeecC
Q 012984 312 PIRFMRPMLRATFCLQPPGDTPTRRSTFDGFLAGCIPVFFEEQ 354 (452)
Q Consensus 312 ~~~y~~~m~~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~d~ 354 (452)
...|...|+.+....+ .+||.+. +.||+.+| -||.+-+-
T Consensus 219 ~nPy~~~La~ad~i~V-T~DSvSM--vsEA~~tG-~pV~v~~l 257 (311)
T PF06258_consen 219 ENPYLGFLAAADAIVV-TEDSVSM--VSEAAATG-KPVYVLPL 257 (311)
T ss_pred CCcHHHHHHhCCEEEE-cCccHHH--HHHHHHcC-CCEEEecC
Confidence 4458888888886666 5788775 78999999 68887543
No 93
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=24.01 E-value=64 Score=31.83 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHHHhhccccccccccCCCCCCCCeEEEeCCCccccHHHhh
Q 012984 8 AAFHIITFFFFFVIFLKLDLSYQISTVESEDCTNRWIYVRWLPSRFNFDLLS 59 (452)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~IyvYdLP~~fn~~~l~ 59 (452)
+|++++..+--+.+|+.+-+..+.+..+ -.|.+||+||+|.++..-+..
T Consensus 33 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~---~~g~~v~r~~~~~Rl~HW~~A 81 (261)
T PRK15006 33 AGVLLVGMWLVLGLHALLRRRLAPKSAT---GHGERLYLYSKAVRLWHWSNA 81 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCC---CCCceEEEecHHHHHHHHHHH
Confidence 4666777666677777777666544332 249999999999999765543
No 94
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=21.84 E-value=56 Score=30.80 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=27.6
Q ss_pred cceEEecCCCCCCCCchHHHHHhhCceeEEee
Q 012984 321 RATFCLQPPGDTPTRRSTFDGFLAGCIPVFFE 352 (452)
Q Consensus 321 ~S~FCL~P~Gd~~ssrrl~DAi~~GCIPVii~ 352 (452)
.-++||+..|.+-.=.+.|||=+.+-|||+=.
T Consensus 20 TNtYclva~ggS~nfys~~e~el~d~IPiV~t 51 (245)
T KOG3185|consen 20 TNTYCLVAIGGSENFYSAFEAELGDVIPIVHT 51 (245)
T ss_pred ccceEEEEecCchhHHHHHHHHhcCccceEEe
Confidence 46799999999888888999999999998643
Done!