BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>012986
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKS
NEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGF
NGFVAEKSLAGQDEKVANEVEDVSLSVEVSSETESSNLNCQNKNVNNSVENISLSTDVSF
VKNPSKGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNG
DLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEI
DHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESL
SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTY
EIKFIVDGQWKVDPQRESVTKGGICNNILRVI

High Scoring Gene Products

Symbol, full name Information P value
AT5G03420 protein from Arabidopsis thaliana 7.6e-74
AT5G39790 protein from Arabidopsis thaliana 2.9e-09
PRKAB1
5'-AMP-activated protein kinase subunit beta-1
protein from Sus scrofa 8.3e-05
prkab1b
protein kinase, AMP-activated, beta 1 non-catalytic subunit, b
gene_product from Danio rerio 0.00020

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  012986
        (452 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2142669 - symbol:AT5G03420 "AT5G03420" species...   574  7.6e-74   2
TAIR|locus:2167067 - symbol:AT5G39790 "AT5G39790" species...   159  2.9e-09   1
UNIPROTKB|P80387 - symbol:PRKAB1 "5'-AMP-activated protei...   102  8.3e-05   1
ZFIN|ZDB-GENE-030131-7172 - symbol:prkab1b "protein kinas...   117  0.00020   1


>TAIR|locus:2142669 [details] [associations]
            symbol:AT5G03420 "AT5G03420" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 GO:GO:0016301 IPI:IPI00535342
            RefSeq:NP_195962.2 UniGene:At.4867 UniGene:At.54704
            ProteinModelPortal:F4KFB3 SMR:F4KFB3 PRIDE:F4KFB3
            EnsemblPlants:AT5G03420.1 GeneID:831846 KEGG:ath:AT5G03420
            OMA:SFNGWHH ArrayExpress:F4KFB3 Uniprot:F4KFB3
        Length = 598

 Score = 574 (207.1 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
 Identities = 143/300 (47%), Positives = 180/300 (60%)

Query:   159 NCQNKNVNNSVENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPP-TESLSDPSFVGEVS 217
             N QN+ +++   N S S D S V+  S+ +   + L S   S+   T       ++  V 
Sbjct:   302 NFQNQQIDDIAANRSGSADDSLVE--SEDNDWMSGLSSCTSSIEEKTTRFIQNGYLDTVG 359

Query:   218 PNLNGHYEKADMEEKVANFIQNGDL--DIIED-RAMI--LNGSALTSKQIASFATVNHPL 272
              + N    ++  EE  +   + G+   D +   R M   LNGSAL  K+I     VN   
Sbjct:   360 ADENDIPNESCPEES-SETTKGGEYIGDSLGGPRIMSTPLNGSALALKEIIHATEVNSSD 418

Query:   273 SEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVL 331
                    G  G D D   E R+RENQ+EID L+FML QKE+ELSRLKEQIEKEKL+LSVL
Sbjct:   419 RNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFMLDQKELELSRLKEQIEKEKLSLSVL 478

Query:   332 QTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIK 391
             Q +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y GDG  VEV GSFNGW HR+ 
Sbjct:   479 QRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEYCGDGNAVEVTGSFNGWQHRVG 538

Query:   392 MDXXXXXXXXXXXXXXXWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 451
             M+               WST+LWLYPGTYEIKFIVDGQW  DPQ++SVT+G I NNIL+V
Sbjct:   539 MELQASKSIGKQKC---WSTLLWLYPGTYEIKFIVDGQWITDPQKDSVTRGHISNNILKV 595

 Score = 190 (71.9 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
 Identities = 39/66 (59%), Positives = 51/66 (77%)

Query:    62 EELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSS-TKPGF 120
             EEL +++ +F++  GL E HVPSMKELSAHGR DLANIVRRRGYKFI++L+ +S  +   
Sbjct:    63 EELRSEIMQFVALAGLPEGHVPSMKELSAHGRVDLANIVRRRGYKFIKELVANSGMEEDC 122

Query:   121 NGFVAE 126
             N  VA+
Sbjct:   123 NELVAD 128

 Score = 37 (18.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query:   347 SDKDEELIAAEESLSGLEVVEIQYS--GD----GEIVE 378
             ++K   L   E SL+G+  +E  +S  GD    GEI E
Sbjct:   156 AEKQGSLSKDESSLAGVLSLENSFSNLGDSNHSGEITE 193


>TAIR|locus:2167067 [details] [associations]
            symbol:AT5G39790 "AT5G39790" species:3702 "Arabidopsis
            thaliana" [GO:0009507 "chloroplast" evidence=IDA] [GO:0030247
            "polysaccharide binding" evidence=IDA] EMBL:CP002688 GO:GO:0009507
            GO:GO:0030247 GO:GO:0016301 IPI:IPI00528927 RefSeq:NP_568573.2
            UniGene:At.26168 ProteinModelPortal:F4KFV1 SMR:F4KFV1 PRIDE:F4KFV1
            DNASU:833975 EnsemblPlants:AT5G39790.1 GeneID:833975
            KEGG:ath:AT5G39790 OMA:EAMSMEY Uniprot:F4KFV1
        Length = 273

 Score = 159 (61.0 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 50/166 (30%), Positives = 84/166 (50%)

Query:   292 RRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ-TKAVTEINKAEKLISDKD 350
             +R+E+  EI ++K  L   E+E+  L +  E E   L + Q ++ ++       L+S  D
Sbjct:   116 KRQEH--EITNIKTELALMELEVQALVKLAE-EIANLGIPQGSRKISGKYIQSHLLSRLD 172

Query:   351 EELIAAEESLSGLEV-----VEIQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXX 405
                   +E + G+E      V + + G  E V+V GSF+GW  R  +             
Sbjct:   173 AVQKKMKEQIKGVEAAQSKEVHVFWIGMAESVQVMGSFDGWSQREDLSPEYSALFTK--- 229

Query:   406 XXXWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 451
                +ST L+L PG YE+KF+VDG+W++ P+  +  +G + NN+L V
Sbjct:   230 ---FSTTLFLRPGRYEMKFLVDGEWQISPEFPTSGEGLMENNVLVV 272


>UNIPROTKB|P80387 [details] [associations]
            symbol:PRKAB1 "5'-AMP-activated protein kinase subunit
            beta-1" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006633 "fatty acid biosynthetic process"
            evidence=IEA] GO:GO:0005634 CAZy:CBM48 eggNOG:NOG238368
            HOGENOM:HOG000230597 HOVERGEN:HBG050430 OrthoDB:EOG4G1MH4
            GO:GO:0006633 ProteinModelPortal:P80387 SMR:P80387 STRING:P80387
            ArrayExpress:P80387 Uniprot:P80387
        Length = 122

 Score = 102 (41.0 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 34/122 (27%), Positives = 57/122 (46%)

Query:   338 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 390
             ++  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W    
Sbjct:    10 DLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNWS--- 66

Query:   391 KMDXXXXXXXXXXXXXXXWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICNNIL 449
             K+                +  +L L  G ++ KF+VDGQW  DP    VT   G  NNI+
Sbjct:    67 KLPLTRSHNN--------FVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNII 118

Query:   450 RV 451
             +V
Sbjct:   119 QV 120


>ZFIN|ZDB-GENE-030131-7172 [details] [associations]
            symbol:prkab1b "protein kinase, AMP-activated,
            beta 1 non-catalytic subunit, b" species:7955 "Danio rerio"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0016301 "kinase
            activity" evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
            InterPro:IPR006828 Pfam:PF04739 SMART:SM01010
            ZFIN:ZDB-GENE-030131-7172 CAZy:CBM48 eggNOG:NOG238368
            GeneTree:ENSGT00390000001416 HOGENOM:HOG000230597
            HOVERGEN:HBG050430 KO:K07199 GO:GO:0016301 EMBL:BX005328
            EMBL:BC066758 IPI:IPI00486377 RefSeq:NP_999878.1 UniGene:Dr.76993
            SMR:Q6NY31 STRING:Q6NY31 DNASU:335232 Ensembl:ENSDART00000040330
            Ensembl:ENSDART00000126301 GeneID:335232 KEGG:dre:335232 CTD:335232
            InParanoid:Q6NY31 OMA:GEWRYIP OrthoDB:EOG4B5P61 NextBio:20810735
            Uniprot:Q6NY31
        Length = 260

 Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
 Identities = 33/145 (22%), Positives = 72/145 (49%)

Query:   308 HQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVE 367
             H++E   SR  +   + K+ +   +   + + + A++ ++ + ++   ++  L     V 
Sbjct:    15 HRRE---SRSGKDGTRPKILMDSAEDGDLFQSDDAKEFLAWRQDQESDSKTPLEERPTV- 70

Query:   368 IQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXWSTVLWLYPGTYEIKFIVD 427
              ++ G G+ + ++GSFN W  +I ++               +  ++ L  G ++ KF VD
Sbjct:    71 FRWKGPGKEIYLSGSFNNWATKIPLNKSHNN----------FVAIIDLPEGEHQYKFYVD 120

Query:   428 GQWKVDPQRESVT-KGGICNNILRV 451
             G W +DP+   VT K G+ NN+++V
Sbjct:   121 GHWTLDPKEPVVTNKSGVVNNVIKV 145


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      452       381   0.00090  117 3  11 23  0.45    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  249 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.72u 0.12s 40.84t   Elapsed:  00:00:02
  Total cpu time:  40.72u 0.12s 40.84t   Elapsed:  00:00:02
  Start:  Mon May 20 15:49:07 2013   End:  Mon May 20 15:49:09 2013

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