Query 012986
Match_columns 452
No_of_seqs 142 out of 756
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:22:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 9.1E-24 2E-28 170.4 9.5 78 363-450 1-79 (79)
2 cd02861 E_set_proteins_like E 99.8 2.5E-18 5.4E-23 138.3 9.2 77 364-450 2-82 (82)
3 KOG1616 Protein involved in Sn 99.6 3E-15 6.5E-20 147.4 7.9 83 363-452 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.3 3E-11 6.5E-16 98.7 9.1 76 363-448 5-83 (85)
5 cd02688 E_set E or "early" set 98.9 9.1E-09 2E-13 79.0 8.1 70 364-442 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.5 4.1E-07 8.9E-12 77.2 7.7 68 364-440 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.4 2.4E-07 5.2E-12 73.6 4.4 58 364-429 11-73 (85)
8 cd02860 Pullulanase_N_term Pul 97.8 6.2E-05 1.3E-09 62.5 7.4 68 365-443 9-88 (100)
9 cd05808 CBM20_alpha_amylase Al 97.8 0.00011 2.3E-09 60.0 8.0 63 365-436 2-78 (95)
10 cd02855 Glycogen_branching_enz 97.7 0.00028 6.1E-09 57.8 8.8 77 365-449 22-105 (106)
11 PF00686 CBM_20: Starch bindin 97.5 0.00023 5E-09 58.9 6.5 58 364-426 2-68 (96)
12 COG0296 GlgB 1,4-alpha-glucan 97.5 0.00018 3.8E-09 78.7 6.5 68 362-437 34-108 (628)
13 PRK12313 glycogen branching en 97.4 0.0006 1.3E-08 73.7 8.7 67 364-439 38-111 (633)
14 PRK12568 glycogen branching en 97.3 0.00085 1.8E-08 74.6 8.9 69 362-440 136-212 (730)
15 cd05820 CBM20_novamyl Novamyl 97.3 0.0022 4.7E-08 54.4 9.5 70 363-441 2-90 (103)
16 cd05818 CBM20_water_dikinase P 97.3 0.0016 3.5E-08 54.2 8.3 67 364-440 2-80 (92)
17 cd02856 Glycogen_debranching_e 97.2 0.0013 2.9E-08 55.1 7.6 65 365-440 10-91 (103)
18 cd05811 CBM20_glucoamylase Glu 97.2 0.0032 6.9E-08 52.8 9.5 74 363-441 6-93 (106)
19 cd05809 CBM20_beta_amylase Bet 97.2 0.0028 6E-08 53.2 8.8 73 363-441 2-89 (99)
20 PLN02447 1,4-alpha-glucan-bran 97.1 0.00086 1.9E-08 74.8 7.1 104 306-438 75-192 (758)
21 cd05814 CBM20_Prei4 Prei4, N-t 97.1 0.0016 3.4E-08 56.5 7.0 55 365-426 2-66 (120)
22 PRK14706 glycogen branching en 97.1 0.0015 3.3E-08 71.4 8.2 67 364-440 38-112 (639)
23 cd02852 Isoamylase_N_term Isoa 97.1 0.0019 4.2E-08 55.2 7.0 59 364-430 7-72 (119)
24 PRK14705 glycogen branching en 97.0 0.0023 4.9E-08 74.7 8.9 67 362-437 636-710 (1224)
25 cd02853 MTHase_N_term Maltooli 96.9 0.0042 9E-08 50.4 7.7 73 364-449 8-82 (85)
26 PRK05402 glycogen branching en 96.9 0.003 6.4E-08 69.7 8.9 68 364-439 131-205 (726)
27 cd05816 CBM20_DPE2_repeat2 Dis 96.9 0.0086 1.9E-07 50.2 9.3 67 366-441 2-85 (99)
28 cd05813 CBM20_genethonin_1 Gen 96.8 0.0046 9.9E-08 51.2 7.1 53 365-426 2-62 (95)
29 cd05817 CBM20_DSP Dual-specifi 96.8 0.0043 9.4E-08 52.2 7.0 52 366-426 2-62 (100)
30 cd05467 CBM20 The family 20 ca 96.8 0.0046 1E-07 50.2 6.9 52 366-426 2-65 (96)
31 cd05807 CBM20_CGTase CGTase, C 96.8 0.011 2.4E-07 49.6 9.1 74 363-441 2-90 (101)
32 TIGR02402 trehalose_TreZ malto 96.8 0.0033 7.2E-08 67.2 7.3 62 366-441 1-65 (542)
33 PLN02316 synthase/transferase 96.5 0.031 6.7E-07 64.7 13.1 60 363-428 328-398 (1036)
34 TIGR01515 branching_enzym alph 96.4 0.0098 2.1E-07 64.5 8.3 68 364-440 28-103 (613)
35 cd05810 CBM20_alpha_MTH Glucan 96.2 0.025 5.4E-07 47.7 8.0 67 365-440 2-86 (97)
36 PRK05402 glycogen branching en 96.0 0.014 3E-07 64.5 6.7 63 365-437 29-96 (726)
37 cd05815 CBM20_DPE2_repeat1 Dis 95.5 0.035 7.6E-07 46.4 5.8 55 366-426 2-65 (101)
38 PF03423 CBM_25: Carbohydrate 95.1 0.068 1.5E-06 44.6 6.2 63 365-432 3-76 (87)
39 PLN02316 synthase/transferase 94.9 0.25 5.5E-06 57.5 12.2 56 363-426 490-557 (1036)
40 TIGR02104 pulA_typeI pullulana 94.4 0.19 4.1E-06 54.6 9.2 66 365-440 20-95 (605)
41 PRK10439 enterobactin/ferric e 93.8 0.27 5.9E-06 51.2 8.8 82 360-451 35-161 (411)
42 PLN02950 4-alpha-glucanotransf 93.5 0.44 9.5E-06 54.8 10.4 72 361-441 150-237 (909)
43 cd05806 CBM20_laforin Laforin 93.2 0.69 1.5E-05 40.9 9.0 54 371-426 12-74 (112)
44 PF11806 DUF3327: Domain of un 92.7 0.39 8.5E-06 42.6 6.8 79 364-450 2-111 (122)
45 TIGR02100 glgX_debranch glycog 92.2 0.39 8.5E-06 53.4 7.4 55 365-430 15-75 (688)
46 TIGR02102 pullulan_Gpos pullul 89.8 0.83 1.8E-05 53.7 7.4 66 365-439 328-408 (1111)
47 PLN02950 4-alpha-glucanotransf 89.4 1.9 4.1E-05 49.8 9.8 67 364-436 9-90 (909)
48 PLN02960 alpha-amylase 89.1 1.2 2.6E-05 51.4 7.9 59 365-427 129-198 (897)
49 PRK03705 glycogen debranching 89.0 0.89 1.9E-05 50.5 6.6 55 365-430 20-78 (658)
50 TIGR02103 pullul_strch alpha-1 87.8 2.1 4.6E-05 49.5 8.8 68 364-440 135-216 (898)
51 cd02857 CD_pullulan_degrading_ 86.4 3.6 7.8E-05 34.1 7.3 58 364-426 16-79 (116)
52 PRK14510 putative bifunctional 80.4 5.9 0.00013 47.2 8.4 56 364-430 23-84 (1221)
53 PF02903 Alpha-amylase_N: Alph 65.5 11 0.00025 32.4 4.6 67 365-436 22-100 (120)
54 PLN03244 alpha-amylase; Provis 65.0 12 0.00026 43.4 5.8 60 365-427 132-201 (872)
55 PLN02877 alpha-amylase/limit d 63.5 24 0.00052 41.6 8.0 64 365-440 223-303 (970)
56 KOG0470 1,4-alpha-glucan branc 56.9 13 0.00028 42.6 4.2 40 366-414 115-157 (757)
57 PF01357 Pollen_allerg_1: Poll 54.9 30 0.00064 28.7 5.1 59 363-433 13-77 (82)
58 PF03370 CBM_21: Putative phos 50.0 29 0.00063 30.1 4.5 70 366-435 23-107 (113)
59 COG3794 PetE Plastocyanin [Ene 44.0 65 0.0014 29.5 5.9 53 360-423 58-111 (128)
60 PF00392 GntR: Bacterial regul 43.8 25 0.00055 27.0 2.9 31 62-92 3-34 (64)
61 KOG2264 Exostosin EXT1L [Signa 43.6 28 0.00061 39.4 4.2 63 289-351 98-167 (907)
62 smart00345 HTH_GNTR helix_turn 39.2 40 0.00086 24.3 3.2 33 64-96 1-34 (60)
63 PF11896 DUF3416: Domain of un 38.9 48 0.001 31.9 4.5 32 384-425 55-87 (187)
64 TIGR03503 conserved hypothetic 37.5 69 0.0015 34.2 5.8 42 378-429 152-195 (374)
65 PF07862 Nif11: Nitrogen fixat 33.9 30 0.00065 25.7 1.8 38 67-108 5-44 (49)
66 COG1725 Predicted transcriptio 32.8 1.1E+02 0.0023 28.1 5.5 65 63-129 15-80 (125)
67 PF10281 Ish1: Putative stress 32.7 76 0.0016 22.8 3.7 30 66-102 7-36 (38)
68 PRK10785 maltodextrin glucosid 32.4 1.6E+02 0.0035 32.5 7.8 51 374-429 33-87 (598)
69 PF08022 FAD_binding_8: FAD-bi 32.2 15 0.00033 31.1 0.0 13 19-37 47-59 (105)
70 KOG1263 Multicopper oxidases [ 30.6 36 0.00078 37.8 2.5 32 405-436 96-131 (563)
71 cd01278 aprataxin_related apra 30.2 50 0.0011 27.3 2.8 34 77-111 42-75 (104)
72 KOG0045 Cytosolic Ca2+-depende 28.1 52 0.0011 37.0 3.2 27 415-441 114-143 (612)
73 PF07495 Y_Y_Y: Y_Y_Y domain; 28.1 52 0.0011 24.8 2.3 22 413-434 34-58 (66)
74 PRK00446 cyaY frataxin-like pr 27.2 1.3E+02 0.0028 26.5 4.9 28 405-436 56-83 (105)
75 KOG0272 U4/U6 small nuclear ri 27.0 1.1E+02 0.0025 33.4 5.3 52 334-385 141-197 (459)
76 PF14347 DUF4399: Domain of un 26.8 1E+02 0.0022 26.4 4.1 33 405-438 49-81 (87)
77 TIGR02375 pseudoazurin pseudoa 24.9 2.2E+02 0.0047 25.4 5.9 48 364-423 23-71 (116)
78 TIGR02325 C_P_lyase_phnF phosp 24.6 92 0.002 29.1 3.8 32 61-92 10-42 (238)
79 PF13473 Cupredoxin_1: Cupredo 23.2 1.6E+02 0.0035 24.5 4.6 16 407-422 74-90 (104)
80 TIGR02404 trehalos_R_Bsub treh 22.8 1E+02 0.0023 29.0 3.8 30 62-91 3-33 (233)
81 PF08308 PEGA: PEGA domain; I 22.5 2.8E+02 0.0061 21.4 5.6 42 366-428 4-45 (71)
82 PF02970 TBCA: Tubulin binding 22.2 1.4E+02 0.0031 25.4 4.1 54 297-350 24-79 (90)
83 PF00730 HhH-GPD: HhH-GPD supe 21.6 89 0.0019 25.8 2.7 34 68-106 18-51 (108)
84 smart00230 CysPc Calpain-like 21.6 97 0.0021 31.4 3.5 26 415-440 98-126 (318)
85 PRK10301 hypothetical protein; 21.5 2.5E+02 0.0054 25.1 5.7 77 340-426 24-107 (124)
86 PF11797 DUF3324: Protein of u 21.4 3.6E+02 0.0078 24.3 6.7 23 414-436 102-127 (140)
87 PF04985 Phage_tube: Phage tai 21.4 3.5E+02 0.0076 24.7 6.8 52 375-440 98-151 (167)
88 PF10648 Gmad2: Immunoglobulin 21.1 4.4E+02 0.0095 22.4 6.8 26 405-430 56-88 (88)
89 TIGR03337 phnR transcriptional 20.9 1.8E+02 0.0039 27.0 4.9 33 62-94 4-37 (231)
90 TIGR02018 his_ut_repres histid 20.5 1.3E+02 0.0027 28.4 3.8 30 62-91 4-34 (230)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.90 E-value=9.1e-24 Score=170.41 Aligned_cols=78 Identities=35% Similarity=0.700 Sum_probs=71.8
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEEcCEeeeCCCCCeecc-
Q 012986 363 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTK- 441 (452)
Q Consensus 363 L~~VTF~W~g~AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIVDGeW~~DPdnPtVtD- 441 (452)
+.+|+|+|.++|++|+|+|+|++|++.+||.+. ..+ |.+++.||||.|+|||+|||+|++||+.|++.+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~---------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~ 70 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS---------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDD 70 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC---------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCC
Confidence 368999999999999999999999988999985 334 999999999999999999999999999999887
Q ss_pred CCccceEEE
Q 012986 442 GGICNNILR 450 (452)
Q Consensus 442 ~GnvNNVL~ 450 (452)
.|+.||+|.
T Consensus 71 ~G~~NN~i~ 79 (79)
T cd02859 71 EGNVNNVID 79 (79)
T ss_pred CCcEeeeEC
Confidence 799999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.76 E-value=2.5e-18 Score=138.34 Aligned_cols=77 Identities=39% Similarity=0.689 Sum_probs=68.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEEcCEee-eCCCCCeec-
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRESVT- 440 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIVDGeW~-~DPdnPtVt- 440 (452)
.+|+|+|.++ +++|+|+|+|++|+ .++|.+. +.|.|++++.|+||.|+|||+|||.|. +||.++...
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~---------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~ 71 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE---------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVD 71 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC---------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceec
Confidence 4799999988 69999999999998 5799874 569999999999999999999999998 999999766
Q ss_pred c-CCccceEEE
Q 012986 441 K-GGICNNILR 450 (452)
Q Consensus 441 D-~GnvNNVL~ 450 (452)
+ .|+.|+||.
T Consensus 72 ~~~g~~n~v~~ 82 (82)
T cd02861 72 DGFGGKNAVFV 82 (82)
T ss_pred CCCCccceEcC
Confidence 4 588899873
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.58 E-value=3e-15 Score=147.38 Aligned_cols=83 Identities=39% Similarity=0.546 Sum_probs=75.9
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEEcCEeeeCCCCCeecc-
Q 012986 363 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTK- 441 (452)
Q Consensus 363 L~~VTF~W~g~AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIVDGeW~~DPdnPtVtD- 441 (452)
..+|+|+|.++++.|+|.|+|++|...++|.+.. .+.|.|.+++.|++|.|+|||+|||+|++|++.|++++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~-------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~ 151 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG-------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDS 151 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC-------CCcccceeeEecCCceEEEEEecCCceecCCCCcccccc
Confidence 4789999999999999999999999989998752 34456999999999999999999999999999999998
Q ss_pred CCccceEEEeC
Q 012986 442 GGICNNILRVI 452 (452)
Q Consensus 442 ~GnvNNVL~Ve 452 (452)
.|+.||+|.|+
T Consensus 152 ~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 152 LGNLNNILEVQ 162 (289)
T ss_pred cCCcccceEec
Confidence 79999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.25 E-value=3e-11 Score=98.67 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=63.9
Q ss_pred ceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEE-EeCCceEEEEEEEcCEeeeCCCCCeec
Q 012986 363 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRESVT 440 (452)
Q Consensus 363 L~~VTF~W~g~-AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL-~LPPG~YEYKFIVDGeW~~DPdnPtVt 440 (452)
...|+|+..+| |++|.|.|+|++|.. .+|+++ +.|+|++++ .|++|.|.|+|+|||.|+.||..+...
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~---------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~ 74 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD---------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTK 74 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC---------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCcee
Confidence 35789997776 999999999998874 799885 689999998 588999999999999999999999887
Q ss_pred c-CCccceE
Q 012986 441 K-GGICNNI 448 (452)
Q Consensus 441 D-~GnvNNV 448 (452)
. .+..-|+
T Consensus 75 ~~~~~~~~~ 83 (85)
T cd02858 75 PGRQVDTSG 83 (85)
T ss_pred eccccccee
Confidence 4 4554444
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.88 E-value=9.1e-09 Score=79.04 Aligned_cols=70 Identities=30% Similarity=0.474 Sum_probs=60.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEEeCC-ceEEEEEEEcCEeeeCCCCCeecc
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRESVTK 441 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LPP-G~YEYKFIVDGeW~~DPdnPtVtD 441 (452)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.+ |.|.|+|+|||.|.+++.++...+
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~---------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~ 74 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV---------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADE 74 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC---------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhc
Confidence 4689998876 8999999999997667899874 5699999999987 999999999999999998866665
Q ss_pred C
Q 012986 442 G 442 (452)
Q Consensus 442 ~ 442 (452)
.
T Consensus 75 ~ 75 (83)
T cd02688 75 G 75 (83)
T ss_pred C
Confidence 3
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.50 E-value=4.1e-07 Score=77.19 Aligned_cols=68 Identities=19% Similarity=0.375 Sum_probs=53.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCcccccCCCcEEEEEEe--------CCc-eEEEEEEE-cCEe-
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRLWSTVLWL--------YPG-TYEIKFIV-DGQW- 430 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq~~-IpMeKd~sss~~~~k~sGvFsttL~L--------PPG-~YEYKFIV-DGeW- 430 (452)
..++|+..+| |++|+|+|+||+|+.. .+|.+. ..|+|++.+.. +.| .|.|.+.. ||+|
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~---------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~ 75 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD---------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWI 75 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC---------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEE
Confidence 4688987766 9999999999999864 789874 68999999864 566 57776666 7886
Q ss_pred -eeCCCCCeec
Q 012986 431 -KVDPQRESVT 440 (452)
Q Consensus 431 -~~DPdnPtVt 440 (452)
+.||-...+.
T Consensus 76 ~~~DPyA~~~~ 86 (99)
T cd02854 76 DRIPAWIKYVT 86 (99)
T ss_pred EEcCcceeEEE
Confidence 5788877655
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.43 E-value=2.4e-07 Score=73.59 Aligned_cols=58 Identities=28% Similarity=0.448 Sum_probs=46.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCcccccCCCcEEEEEE--eCCceEEEEEEEcCE
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRLWSTVLW--LYPGTYEIKFIVDGQ 429 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNn-Wq~~-IpMeKd~sss~~~~k~sGvFsttL~--LPPG~YEYKFIVDGe 429 (452)
..|+|+..+| |++|.|.+.|++ |... ++|.+. ...|+|++++. +++|.+.|+|.|+|.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~--------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK--------DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE--------CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec--------CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 5799987765 999999999999 8754 889841 37899999998 888988888888754
No 8
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.84 E-value=6.2e-05 Score=62.51 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=53.1
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEcCE-----eee
Q 012986 365 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVDGQ-----WKV 432 (452)
Q Consensus 365 ~VTF~W~g~-AkeV~IaGSFNnWq-----~~IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVDGe-----W~~ 432 (452)
.++|+..++ |++|.|.. |++|. ..++|.+ ...|+|++.+. +.+|.+ |+|.|+|. ...
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~---------~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~ 77 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR---------GENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVV 77 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec---------CCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEc
Confidence 488987766 99999988 88886 3478886 37899999986 566764 88888875 688
Q ss_pred CCCCCeeccCC
Q 012986 433 DPQRESVTKGG 443 (452)
Q Consensus 433 DPdnPtVtD~G 443 (452)
||-...+...|
T Consensus 78 DPyA~~~~~~~ 88 (100)
T cd02860 78 DPYAKALSANG 88 (100)
T ss_pred CcccEeEeeCC
Confidence 99888777544
No 9
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.80 E-value=0.00011 Score=60.04 Aligned_cols=63 Identities=27% Similarity=0.555 Sum_probs=47.9
Q ss_pred EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE---cC--Ee
Q 012986 365 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV---DG--QW 430 (452)
Q Consensus 365 ~VTF~W~g---~AkeV~IaGS---FNnWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV---DG--eW 430 (452)
+|+|.... .|+.|+|+|+ +.+|++. ++|... ..+.|.+.+.||+| .++|||++ +| .|
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~---------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~~~W 72 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA---------TYPVWSGTVDLPAGTAIEYKYIKKDGSGTVTW 72 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC---------CCCCEEEEEEeCCCCeEEEEEEEECCCCcEEE
Confidence 56776653 4899999995 6799864 678753 56889999999987 79999997 24 47
Q ss_pred eeCCCC
Q 012986 431 KVDPQR 436 (452)
Q Consensus 431 ~~DPdn 436 (452)
-..++.
T Consensus 73 E~~~nr 78 (95)
T cd05808 73 ESGPNR 78 (95)
T ss_pred ecCCCE
Confidence 666643
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.68 E-value=0.00028 Score=57.77 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=51.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCcccccCCCcEEEEEE-eCCc-eEEEEEEEc-CEe--eeCCCCC
Q 012986 365 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDPQRE 437 (452)
Q Consensus 365 ~VTF~W~g~-AkeV~IaGSFNnWq~-~IpMeKd~sss~~~~k~sGvFsttL~-LPPG-~YEYKFIVD-GeW--~~DPdnP 437 (452)
.++|+...+ |+.|.|.|+|++|.. ..+|.+. ...|.|.+.+. +++| .|.|++..+ |.| +.||-..
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~--------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~ 93 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR--------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAF 93 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC--------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCce
Confidence 478886655 999999999999964 3688874 24899999885 6667 444444444 333 4577665
Q ss_pred eeccCCccceEE
Q 012986 438 SVTKGGICNNIL 449 (452)
Q Consensus 438 tVtD~GnvNNVL 449 (452)
-+......++|+
T Consensus 94 ~~~~~~~~~~~~ 105 (106)
T cd02855 94 YSELRPGTASIV 105 (106)
T ss_pred eeEeCCCCeEEe
Confidence 555444455553
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.54 E-value=0.00023 Score=58.85 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=46.2
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCcc--ccccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE
Q 012986 364 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV 426 (452)
Q Consensus 364 ~~VTF~W~g---~AkeV~IaGSFN---nWq~--~IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV 426 (452)
..|+|.... +++.|+|+|+.. +|++ .++|..... ......|.+++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~-----~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEG-----TENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESS-----SSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccC-----CCCCCeEEEEEECcCCCEEEEEEEE
Confidence 568888753 589999999997 7997 478876311 0246899999999998 69999999
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.00018 Score=78.72 Aligned_cols=68 Identities=24% Similarity=0.376 Sum_probs=52.7
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEcCE-----eeeCC
Q 012986 362 GLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVDGQ-----WKVDP 434 (452)
Q Consensus 362 gL~~VTF~W~g~-AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVDGe-----W~~DP 434 (452)
|-..|+|+..+| +..|.|.|+||+|.. .+|.... .++.|.|.+++. ++|| +.|||.|++. ++.||
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~-~~~~~~~------~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP 105 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDG-RRMPMRD------RKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADP 105 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccc-eeccccc------CCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCc
Confidence 566899986665 999999999999986 4444321 146799999998 9999 9999999754 36677
Q ss_pred CCC
Q 012986 435 QRE 437 (452)
Q Consensus 435 dnP 437 (452)
-.-
T Consensus 106 ~a~ 108 (628)
T COG0296 106 YAR 108 (628)
T ss_pred hhh
Confidence 553
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.36 E-value=0.0006 Score=73.68 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=50.5
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCcccccCCCcEEEEEE-eCCc-eEEEEEEE-cCEe--eeCCCC
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVDPQR 436 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq~~-IpMeKd~sss~~~~k~sGvFsttL~-LPPG-~YEYKFIV-DGeW--~~DPdn 436 (452)
..|+|+..+| |++|.|+|+|++|... .+|.+. ..|+|.+.+. +++| .|.|++.+ +|.| +.||-.
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~---------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya 108 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR---------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFA 108 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc---------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCce
Confidence 4799987776 9999999999999864 688873 6799999997 4555 67777654 5765 456665
Q ss_pred Cee
Q 012986 437 ESV 439 (452)
Q Consensus 437 PtV 439 (452)
..+
T Consensus 109 ~~~ 111 (633)
T PRK12313 109 FYF 111 (633)
T ss_pred EEE
Confidence 443
No 14
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.29 E-value=0.00085 Score=74.62 Aligned_cols=69 Identities=26% Similarity=0.429 Sum_probs=52.9
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEE---cCEee--eC
Q 012986 362 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIV---DGQWK--VD 433 (452)
Q Consensus 362 gL~~VTF~W~g~-AkeV~IaGSFNnWq~~-IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIV---DGeW~--~D 433 (452)
+-.-|+|+..+| |++|.|+|+||+|... .+|.+ ...|+|++.+. +.+| ..|||.| ||.+. .|
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~---------~~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~D 205 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQ---------RIGGFWELFLPRVEAG-ARYKYAITAADGRVLLKAD 205 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceeccc---------CCCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCC
Confidence 445689987776 9999999999999864 68876 37899999984 7777 3577777 78764 68
Q ss_pred CCCCeec
Q 012986 434 PQRESVT 440 (452)
Q Consensus 434 PdnPtVt 440 (452)
|-...+.
T Consensus 206 PYA~~~e 212 (730)
T PRK12568 206 PVARQTE 212 (730)
T ss_pred CcceEee
Confidence 8765543
No 15
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.29 E-value=0.0022 Score=54.44 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=52.5
Q ss_pred ceEEEEEEec-----CCceEEEEeeeC---CCcccc-----ccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE--
Q 012986 363 LEVVEIQYSG-----DGEIVEVAGSFN---GWHHRI-----KMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV-- 426 (452)
Q Consensus 363 L~~VTF~W~g-----~AkeV~IaGSFN---nWq~~I-----pMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV-- 426 (452)
.++|+|+... .++.|+|+|+-. +|.... +|.. .....|.+.+.||.| ..+|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~---------~~~~~W~~~~~lp~~~~veyK~v~~~ 72 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC---------PNWPDWFVVASVPAGTYIEFKFLKAP 72 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc---------CCCCCEEEEEEcCCCCcEEEEEEEEC
Confidence 3689999863 489999999876 898632 5653 245789999999999 69999999
Q ss_pred -cCE--eeeCCCCCeecc
Q 012986 427 -DGQ--WKVDPQRESVTK 441 (452)
Q Consensus 427 -DGe--W~~DPdnPtVtD 441 (452)
||. |-..++.-+..+
T Consensus 73 ~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 73 ADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred CCCCEEEEeCCCEeEECC
Confidence 453 877766555444
No 16
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.26 E-value=0.0016 Score=54.19 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=50.2
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCccccccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE---cC--Eee
Q 012986 364 EVVEIQYSG---DGEIVEVAGSFN---GWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV---DG--QWK 431 (452)
Q Consensus 364 ~~VTF~W~g---~AkeV~IaGSFN---nWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV---DG--eW~ 431 (452)
..|+|+.+. .|+.|+|+|+-. +|.+..+|.. ..+.|.+.+.||+| .++|||++ || .|-
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~----------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v~WE 71 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW----------TENGWVCDLELDGGELVEYKFVIVKRDGSVIWE 71 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc----------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCEEEE
Confidence 456777654 489999999884 8997777864 24579999999988 79999999 44 386
Q ss_pred eCCCCCeec
Q 012986 432 VDPQRESVT 440 (452)
Q Consensus 432 ~DPdnPtVt 440 (452)
..++.-+..
T Consensus 72 ~g~Nr~~~~ 80 (92)
T cd05818 72 GGNNRVLEL 80 (92)
T ss_pred eCCCEEEEc
Confidence 666654433
No 17
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.23 E-value=0.0013 Score=55.12 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=48.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCcccccCCCcEEEEE-EeCCceEEEEEEEcC------------
Q 012986 365 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRLWSTVL-WLYPGTYEIKFIVDG------------ 428 (452)
Q Consensus 365 ~VTF~W~g~-AkeV~IaGSFNnWq--~~IpMeKd~sss~~~~k~sGvFsttL-~LPPG~YEYKFIVDG------------ 428 (452)
.++|+..++ |+.|.|.. |++|. ..++|++. ..|+|.+.+ .+.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~---------~~GvW~~~v~~~~~g~-~Y~y~i~g~~~p~~~~~~~~ 78 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE---------YGGVWHGFLPGIKAGQ-RYGFRVHGPYDPERGLRFNP 78 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc---------cCCEEEEEECCCCCCC-EEEEEECCccCcccCcccCC
Confidence 478987766 99999998 66664 34789863 689999998 466775 79999999
Q ss_pred -EeeeCCCCCeec
Q 012986 429 -QWKVDPQRESVT 440 (452)
Q Consensus 429 -eW~~DPdnPtVt 440 (452)
....||-...+.
T Consensus 79 ~~~~~DPYA~~~~ 91 (103)
T cd02856 79 AKLLLDPYARALD 91 (103)
T ss_pred CeEEecCCcceEc
Confidence 455666665444
No 18
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.19 E-value=0.0032 Score=52.84 Aligned_cols=74 Identities=28% Similarity=0.542 Sum_probs=51.2
Q ss_pred ceEEEEEEec---CCceEEEEeeeC---CCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE---cC--
Q 012986 363 LEVVEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV---DG-- 428 (452)
Q Consensus 363 L~~VTF~W~g---~AkeV~IaGSFN---nWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV---DG-- 428 (452)
...|+|.... .|+.|+|+|+.. +|++. ++|..... ....+.|.+.+.||+| .++|||+| ||
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~-----t~~~~~W~~~v~lp~~~~veYKy~~~~~~~~~ 80 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQY-----TSSNPLWSVTIPLPAGTSFEYKFIRKESDGSV 80 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccC-----ccCCCcEEEEEEeCCCCcEEEEEEEEcCCCcE
Confidence 4678887653 489999999975 79863 67864210 0135789999999988 59999997 23
Q ss_pred EeeeCCCCCeecc
Q 012986 429 QWKVDPQRESVTK 441 (452)
Q Consensus 429 eW~~DPdnPtVtD 441 (452)
.|-..++.-+...
T Consensus 81 ~WE~~~nr~~~~~ 93 (106)
T cd05811 81 TWESDPNRSYTVP 93 (106)
T ss_pred EEecCCCeEEECC
Confidence 3866664433334
No 19
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.16 E-value=0.0028 Score=53.25 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=50.2
Q ss_pred ceEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE---cC--
Q 012986 363 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV---DG-- 428 (452)
Q Consensus 363 L~~VTF~W~g----~AkeV~IaG---SFNnWq~~I-pMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV---DG-- 428 (452)
.++|+|.... .++.|+|+| .+.+|.... +|.... ....+.|.+.+.||+| .++|||++ ||
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~------~~~~~~W~~~~~lp~~~~veyKyv~~~~~~~~ 75 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY------NSHSNDWRGTVHLPAGRNIEFKAIKKSKDGTN 75 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc------CCCCCCEEEEEEecCCCcEEEEEEEEcCCCCe
Confidence 4689998742 489999999 566998642 233210 0245789999999999 69999999 44
Q ss_pred -EeeeCCCCCeecc
Q 012986 429 -QWKVDPQRESVTK 441 (452)
Q Consensus 429 -eW~~DPdnPtVtD 441 (452)
.|-..++.-+...
T Consensus 76 ~~WE~g~nr~~~~p 89 (99)
T cd05809 76 KSWQGGQQSWYPVP 89 (99)
T ss_pred eEEecCCCeeEECC
Confidence 2766655433333
No 20
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.14 E-value=0.00086 Score=74.84 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=66.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhcccchHHHHHHHhhCCCceEEEEEEecC-CceEEEEeeeC
Q 012986 306 MLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGD-GEIVEVAGSFN 384 (452)
Q Consensus 306 m~~qkele~~r~k~q~e~~K~aLa~~~~k~~~ei~eA~kli~eK~~~LdaAe~aLsgL~~VTF~W~g~-AkeV~IaGSFN 384 (452)
-+..+...+.+.+++|++..-.|.-+ -.+|+..=|+.. . ..++|+..+| |+.|+|+|+||
T Consensus 75 ~~~~r~~~~~~~~~~i~~~~~~l~~f--~~~y~~lGa~~~----------------~-~g~~FrvWAP~A~~V~LvGdFN 135 (758)
T PLN02447 75 HLRYRYSRYRRRREEIEKNEGGLEAF--SRGYEKFGFNRS----------------E-GGITYREWAPGAKAAALIGDFN 135 (758)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHhceeEEe----------------c-CCEEEEEECCCCCEEEEEEecC
Confidence 34445555666667776554444332 223444434321 0 2578886665 99999999999
Q ss_pred CCccc-cccCCCCCCCcccccCCCcEEEEEE-------eCCceEEEEEEEc---CE--eeeCCCCCe
Q 012986 385 GWHHR-IKMDPLPSSSIIEPIRSRLWSTVLW-------LYPGTYEIKFIVD---GQ--WKVDPQRES 438 (452)
Q Consensus 385 nWq~~-IpMeKd~sss~~~~k~sGvFsttL~-------LPPG~YEYKFIVD---Ge--W~~DPdnPt 438 (452)
+|... .+|++. +.|+|++.+. +++|. .|||.|. |. .+.||-...
T Consensus 136 ~W~~~~~~M~~~---------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya~~ 192 (758)
T PLN02447 136 NWNPNAHWMTKN---------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWIKY 192 (758)
T ss_pred CCCCCccCceeC---------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchHhe
Confidence 99864 689874 6899999986 44553 6777774 54 456775543
No 21
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.11 E-value=0.0016 Score=56.52 Aligned_cols=55 Identities=24% Similarity=0.532 Sum_probs=43.8
Q ss_pred EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE
Q 012986 365 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV 426 (452)
Q Consensus 365 ~VTF~W~g----~AkeV~IaGS---FNnWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV 426 (452)
.|+|.... .++.|+|+|+ +.+|++. ++|.+.. ...+.|.+.+.||++ .++|||++
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~-------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED-------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC-------CcCCccEEEEEECCCCeEEEEEEE
Confidence 46676654 4899999999 8899854 6887631 145889999999998 89999999
No 22
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.08 E-value=0.0015 Score=71.37 Aligned_cols=67 Identities=31% Similarity=0.447 Sum_probs=50.7
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEcC---Ee--eeCCC
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVDG---QW--KVDPQ 435 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq~~-IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVDG---eW--~~DPd 435 (452)
..|+|+..+| |++|.|+|+||+|... .+|.+. ..|+|++.+. +.+| ..|||.|+| .+ +.||-
T Consensus 38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~---------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPY 107 (639)
T PRK14706 38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL---------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPY 107 (639)
T ss_pred ccEEEEEECCCCCEEEEEEecCCccccccccccc---------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcc
Confidence 4689987666 9999999999999864 689874 5699999986 4566 468888864 44 67777
Q ss_pred CCeec
Q 012986 436 RESVT 440 (452)
Q Consensus 436 nPtVt 440 (452)
...+.
T Consensus 108 a~~~~ 112 (639)
T PRK14706 108 GSFFE 112 (639)
T ss_pred eEEEe
Confidence 65444
No 23
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.06 E-value=0.0019 Score=55.21 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=43.9
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEcCEe
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVDGQW 430 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq---~--~IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVDGeW 430 (452)
..++|+..++ |++|.|.. |++|. + .++|.+... +..|+|++.+. +.+|. .|+|.|+|.|
T Consensus 7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~------~~~gvW~~~v~~~~~g~-~Y~y~v~g~~ 72 (119)
T cd02852 7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVN------RTGDVWHVFVEGLKPGQ-LYGYRVDGPF 72 (119)
T ss_pred CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCccc------ccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence 3488987666 99999998 88886 2 367765411 24699999985 67886 6999999854
No 24
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.99 E-value=0.0023 Score=74.73 Aligned_cols=67 Identities=33% Similarity=0.555 Sum_probs=50.6
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEc---CEe--eeC
Q 012986 362 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVD---GQW--KVD 433 (452)
Q Consensus 362 gL~~VTF~W~g~-AkeV~IaGSFNnWq~~-IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVD---GeW--~~D 433 (452)
+..-|.|...+| |+.|.|+|+||+|... .+|.+. ...|+|++.+. +.+|. .|||.|. |.| +.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~--------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~D 706 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL--------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKAD 706 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC--------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCC
Confidence 445788986665 9999999999999864 678763 36799999985 78885 5888884 555 456
Q ss_pred CCCC
Q 012986 434 PQRE 437 (452)
Q Consensus 434 PdnP 437 (452)
|-..
T Consensus 707 PyA~ 710 (1224)
T PRK14705 707 PLAF 710 (1224)
T ss_pred cccc
Confidence 6553
No 25
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.95 E-value=0.0042 Score=50.45 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=51.1
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEEc-CEeeeCCCCCeecc
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRESVTK 441 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIVD-GeW~~DPdnPtVtD 441 (452)
..++|+..++ |++|.|.... |. .++|.+. ..|+|++.+.--+|. .|+|.|+ |..+.||.......
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~---------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~~~ 74 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD---------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQPE 74 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC---------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccCCC
Confidence 4588987776 9999999643 53 4789874 689999998633775 4777776 56889999887543
Q ss_pred CCccceEE
Q 012986 442 GGICNNIL 449 (452)
Q Consensus 442 ~GnvNNVL 449 (452)
+.+-.++|
T Consensus 75 ~~~~~s~v 82 (85)
T cd02853 75 GVHGPSQV 82 (85)
T ss_pred CCCCCeEe
Confidence 32223443
No 26
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.93 E-value=0.003 Score=69.67 Aligned_cols=68 Identities=28% Similarity=0.438 Sum_probs=50.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCcccccCCCcEEEEEE-eCCc-eEEEEEEEc-CEe--eeCCCC
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDPQR 436 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq~~-IpMeKd~sss~~~~k~sGvFsttL~-LPPG-~YEYKFIVD-GeW--~~DPdn 436 (452)
..|+|+...| |++|.|+|+||+|... .+|.+. ...|+|.+.+. +++| .|.|++..+ |.| +.||-.
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~--------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa 202 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR--------GESGVWELFIPGLGEGELYKFEILTADGELLLKADPYA 202 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc--------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCce
Confidence 4589987776 9999999999999764 688874 26799999885 6777 677777665 454 455555
Q ss_pred Cee
Q 012986 437 ESV 439 (452)
Q Consensus 437 PtV 439 (452)
-.+
T Consensus 203 ~~~ 205 (726)
T PRK05402 203 FAA 205 (726)
T ss_pred EEE
Confidence 433
No 27
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.88 E-value=0.0086 Score=50.22 Aligned_cols=67 Identities=25% Similarity=0.546 Sum_probs=48.3
Q ss_pred EEEEEec----CCceEEEEeeeC---CCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc--eEEEEEEE--c--CE-
Q 012986 366 VEIQYSG----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG--TYEIKFIV--D--GQ- 429 (452)
Q Consensus 366 VTF~W~g----~AkeV~IaGSFN---nWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG--~YEYKFIV--D--Ge- 429 (452)
|+|+... .++.|+|+|+.. +|.+. ++|... ....|.+.+.+|++ .++|||++ + |.
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~---------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~~~~ 72 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV---------GFPIWEADIDISKDSFPFEYKYIIANKDSGVV 72 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC---------CCCcEEEEEEeCCCCccEEEEEEEEeCCCCcE
Confidence 5676553 489999999974 89864 678753 56789999999986 59999999 2 32
Q ss_pred -eeeCCCCCeecc
Q 012986 430 -WKVDPQRESVTK 441 (452)
Q Consensus 430 -W~~DPdnPtVtD 441 (452)
|-.-++.-....
T Consensus 73 ~WE~g~nr~~~~p 85 (99)
T cd05816 73 SWENGPNRELSAP 85 (99)
T ss_pred EEEcCCCeEEECC
Confidence 766555444333
No 28
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.83 E-value=0.0046 Score=51.18 Aligned_cols=53 Identities=26% Similarity=0.511 Sum_probs=42.2
Q ss_pred EEEEEEec----CCceEEEEeeeC---CCccccccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE
Q 012986 365 VVEIQYSG----DGEIVEVAGSFN---GWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV 426 (452)
Q Consensus 365 ~VTF~W~g----~AkeV~IaGSFN---nWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV 426 (452)
+|+|+... +++.|+|+|+-. +|+...+|... ..+.|.+.+.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~---------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV---------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC---------CCCCEEEEEEecCCCcEEEEEEE
Confidence 57777643 357788999875 79877888752 56789999999998 59999998
No 29
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.81 E-value=0.0043 Score=52.19 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=40.3
Q ss_pred EEEEEe--c-CCceEEEEeee---CCCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE
Q 012986 366 VEIQYS--G-DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV 426 (452)
Q Consensus 366 VTF~W~--g-~AkeV~IaGSF---NnWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV 426 (452)
|+|... . .|+.|+|+|+- -+|++. ++|... +...|++.+.||+| .++|||+|
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~---------~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWN---------EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCC---------CCCCEEEEEEECCCCcEEEEEEE
Confidence 445443 2 48999999995 589864 678652 56789999999988 69999999
No 30
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.81 E-value=0.0046 Score=50.18 Aligned_cols=52 Identities=27% Similarity=0.498 Sum_probs=41.1
Q ss_pred EEEEEe---cCCceEEEEeeeC---CCccc--cccCCCCCCCcccccC-CCcEEEEEEeCC--c-eEEEEEEE
Q 012986 366 VEIQYS---GDGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIR-SRLWSTVLWLYP--G-TYEIKFIV 426 (452)
Q Consensus 366 VTF~W~---g~AkeV~IaGSFN---nWq~~--IpMeKd~sss~~~~k~-sGvFsttL~LPP--G-~YEYKFIV 426 (452)
|+|... ..|+.|+|+|+.. +|++. ++|... + .+.|.+.+.+|+ | .++|||++
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTS---------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCC---------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 455544 2589999999986 89853 678753 4 689999999999 7 79999999
No 31
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.76 E-value=0.011 Score=49.59 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=50.6
Q ss_pred ceEEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE---cCE
Q 012986 363 LEVVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV---DGQ 429 (452)
Q Consensus 363 L~~VTF~W~-g---~AkeV~IaGSFN---nWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV---DGe 429 (452)
.++|+|... . .++.|+|+|+-. +|.+. +.|..... ......|.+.+.||.| .++|||++ ||.
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~-----~~~~~~W~~~~~lp~~~~~eyK~~~~~~~~~ 76 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQV-----VYQYPNWYYDVSVPAGTTIEFKFIKKNGDNT 76 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccC-----CCcCCcEEEEEEcCCCCcEEEEEEEECCCCC
Confidence 467888874 2 489999999886 89864 32321100 0245789999999999 69999999 353
Q ss_pred --eeeCCCCCeecc
Q 012986 430 --WKVDPQRESVTK 441 (452)
Q Consensus 430 --W~~DPdnPtVtD 441 (452)
|-..++.-+...
T Consensus 77 ~~WE~g~nr~~~~p 90 (101)
T cd05807 77 VTWESGSNHTYTAP 90 (101)
T ss_pred EEEEeCCCEEEeCC
Confidence 766655544433
No 32
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.75 E-value=0.0033 Score=67.24 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=49.8
Q ss_pred EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEcC-EeeeCCCCCeecc
Q 012986 366 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESVTK 441 (452)
Q Consensus 366 VTF~W~g~-AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVDG-eW~~DPdnPtVtD 441 (452)
|+|+..+| |++|.|.+. + ..++|.+. ..|+|++++. +.+| +.|+|.||| .-+.||.......
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~---------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~ 65 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL---------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPD 65 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC---------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccccc
Confidence 57887766 999999972 3 35799874 6799999996 7788 789999999 6788999887543
No 33
>PLN02316 synthase/transferase
Probab=96.49 E-value=0.031 Score=64.70 Aligned_cols=60 Identities=15% Similarity=0.359 Sum_probs=45.4
Q ss_pred ceEEEEEEec------CCceEEEEeeeCCCcccc--c--cCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEE-cC
Q 012986 363 LEVVEIQYSG------DGEIVEVAGSFNGWHHRI--K--MDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIV-DG 428 (452)
Q Consensus 363 L~~VTF~W~g------~AkeV~IaGSFNnWq~~I--p--MeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIV-DG 428 (452)
-.+|++-|+. +..+|+|.|.||+|.+.. . |.+. ....++.|.+++.+|+.-|-.-|+. ||
T Consensus 328 G~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~------~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 328 GDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKS------EEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecc------cCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 3578888872 379999999999999742 2 2221 1135668999999999999999998 66
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.43 E-value=0.0098 Score=64.48 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=50.7
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEc---CE--eeeCCC
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKVDPQ 435 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq~~-IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVD---Ge--W~~DPd 435 (452)
..++|+..+| |+.|.|.|+||+|... .+|.+. ...|+|++.+. +.+|. .|+|.|+ |. ++.||-
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~--------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPY 98 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR--------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPY 98 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe--------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCC
Confidence 4688986666 9999999999999764 578764 24799999886 46665 5888884 55 467887
Q ss_pred CCeec
Q 012986 436 RESVT 440 (452)
Q Consensus 436 nPtVt 440 (452)
.-.+.
T Consensus 99 A~~~~ 103 (613)
T TIGR01515 99 AFYAE 103 (613)
T ss_pred Eeeec
Confidence 75444
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.24 E-value=0.025 Score=47.73 Aligned_cols=67 Identities=25% Similarity=0.407 Sum_probs=48.1
Q ss_pred EEEEEEe----cCCceEEEEeeeC---CCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE---cC---
Q 012986 365 VVEIQYS----GDGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV---DG--- 428 (452)
Q Consensus 365 ~VTF~W~----g~AkeV~IaGSFN---nWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV---DG--- 428 (452)
+|+|... ..++.|+|+|+.. +|++. ++|... ....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~---------~~~~W~~~v~lp~~~~veyKyv~~~~~~~~~ 72 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT---------AYPTWSGSISLPASTNVEWKCLKRNETNPTA 72 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC---------CCCeEEEEEEcCCCCeEEEEEEEEcCCCCcc
Confidence 5667633 2489999999986 89864 567542 45789999999999 79999998 22
Q ss_pred --EeeeCCCCCeec
Q 012986 429 --QWKVDPQRESVT 440 (452)
Q Consensus 429 --eW~~DPdnPtVt 440 (452)
.|...++.-+..
T Consensus 73 ~v~WE~g~Nr~~~~ 86 (97)
T cd05810 73 GVQWQGGGNNQLTT 86 (97)
T ss_pred eEEEeeCCCEEEeC
Confidence 376666554433
No 36
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.97 E-value=0.014 Score=64.51 Aligned_cols=63 Identities=21% Similarity=0.057 Sum_probs=46.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEE--cCE--eeeCCCCC
Q 012986 365 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQRE 437 (452)
Q Consensus 365 ~VTF~W~g~-AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIV--DGe--W~~DPdnP 437 (452)
-|+|+..+| |.+|.|+|+||+ ....+|.+. ...|+|++.+.+..|.. |||.| ||+ .+.||-.-
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~--------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPyaf 96 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL--------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYRF 96 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc--------CCCceEEEEecCCCCCC-eEEEEEeCCceeEecccccc
Confidence 578875554 999999999996 334789864 36799999999778843 55555 886 45577663
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.49 E-value=0.035 Score=46.44 Aligned_cols=55 Identities=20% Similarity=0.410 Sum_probs=40.0
Q ss_pred EEEEEe--c-CCceEEEEeeeC---CCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE
Q 012986 366 VEIQYS--G-DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV 426 (452)
Q Consensus 366 VTF~W~--g-~AkeV~IaGSFN---nWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV 426 (452)
|+|... . .|+.|+|+|+-. +|.+. ++|.... ..+...|.+.+.+|++ .++|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~------~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSH------QGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecC------CCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 556554 3 489999999875 79754 6775310 0134589999999988 69999999
No 38
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.06 E-value=0.068 Score=44.63 Aligned_cols=63 Identities=25% Similarity=0.571 Sum_probs=39.1
Q ss_pred EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEE-cC--Eeee
Q 012986 365 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIV-DG--QWKV 432 (452)
Q Consensus 365 ~VTF~W~g------~AkeV~IaGSFNnWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIV-DG--eW~~ 432 (452)
+|++.|.. ++.+|.+.+.|++|+.. +.|.+... +...|.|.+++.+|..-|+..|+. || .|-.
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~-----~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN 76 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCV-----PDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN 76 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS--------TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeee-----eecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence 67777743 37899999999999875 56765310 123799999999999999999988 65 5644
No 39
>PLN02316 synthase/transferase
Probab=94.90 E-value=0.25 Score=57.48 Aligned_cols=56 Identities=27% Similarity=0.378 Sum_probs=44.3
Q ss_pred ceEEEEEEec------CCceEEEEeeeCCCccc------cccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEE
Q 012986 363 LEVVEIQYSG------DGEIVEVAGSFNGWHHR------IKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIV 426 (452)
Q Consensus 363 L~~VTF~W~g------~AkeV~IaGSFNnWq~~------IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIV 426 (452)
-.+|++-|+. +..+|++.|+||+|++. +.|.+. ...+.|.+++.+|...|-..|+-
T Consensus 490 G~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~--------~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 490 GTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA--------DNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec--------CCCceEEEEEEccccceEEEEEE
Confidence 3578998874 36899999999999975 235553 24456689999999999999988
No 40
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.39 E-value=0.19 Score=54.59 Aligned_cols=66 Identities=24% Similarity=0.314 Sum_probs=47.6
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCcccccCCCcEEEEEE-eCCc-eEEEEEEEcCE--eeeCC
Q 012986 365 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRLWSTVLW-LYPG-TYEIKFIVDGQ--WKVDP 434 (452)
Q Consensus 365 ~VTF~W~g~-AkeV~IaGSFNnWq~-----~IpMeKd~sss~~~~k~sGvFsttL~-LPPG-~YEYKFIVDGe--W~~DP 434 (452)
.|+|+..+| |++|.|.+ |++|.. .++|.+. ..|+|++.+. +.+| .|.|++..+|. ++.||
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~---------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DP 89 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG---------ENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDP 89 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC---------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCC
Confidence 489987776 99999997 888753 4688863 6799999996 5666 44444444565 48899
Q ss_pred CCCeec
Q 012986 435 QRESVT 440 (452)
Q Consensus 435 dnPtVt 440 (452)
-...+.
T Consensus 90 ya~~~~ 95 (605)
T TIGR02104 90 YAKAVT 95 (605)
T ss_pred Ccceec
Confidence 876544
No 41
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=93.85 E-value=0.27 Score=51.24 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=57.7
Q ss_pred CCCceEEEEEEecC-C-------ceEEEEeeeCCCc------cccccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEE
Q 012986 360 LSGLEVVEIQYSGD-G-------EIVEVAGSFNGWH------HRIKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKF 424 (452)
Q Consensus 360 LsgL~~VTF~W~g~-A-------keV~IaGSFNnWq------~~IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKF 424 (452)
..+.+.|||-|+++ + ..|+|. .|+.+ ....|.+- .+..+|..++.||.. +-.|+|
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~--~n~~tdh~~~~~~~~l~rl--------~~tDvW~~~~~~p~~~r~sY~~ 104 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIY--INGVTDHHQNSQPQSLQRI--------AGTDVWQWSTELSANWRGSYCF 104 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEe--CCCCCCcCccCCcchhhcc--------CCCceEEEEEEECcccEEEEEE
Confidence 45668999999975 3 258873 33333 33478886 478999999999999 899999
Q ss_pred EEc---C-------------------------EeeeCCCCCeeccC--CccceEEEe
Q 012986 425 IVD---G-------------------------QWKVDPQRESVTKG--GICNNILRV 451 (452)
Q Consensus 425 IVD---G-------------------------eW~~DPdnPtVtD~--GnvNNVL~V 451 (452)
+++ . .-+.||.||..... |...|+|.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 105 IPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 993 1 11479999976542 443477654
No 42
>PLN02950 4-alpha-glucanotransferase
Probab=93.51 E-value=0.44 Score=54.83 Aligned_cols=72 Identities=19% Similarity=0.365 Sum_probs=54.1
Q ss_pred CCceEEEEEEec----CCceEEEEeeeC---CCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc--eEEEEEEE---
Q 012986 361 SGLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG--TYEIKFIV--- 426 (452)
Q Consensus 361 sgL~~VTF~W~g----~AkeV~IaGSFN---nWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG--~YEYKFIV--- 426 (452)
...+.|+|+... .|..|+|+|+-. +|.+. ++|.. .....|.+.+.+|++ ..+|||++
T Consensus 150 ~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~---------~~~p~W~~~v~lp~~~~~~EYKyv~~~~ 220 (909)
T PLN02950 150 PDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY---------TGDSIWEADCLVPKSDFPIKYKYALQTA 220 (909)
T ss_pred CCceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc---------CCCCcEEEEEEecCCCceEEEEEEEEcC
Confidence 445788998654 489999999876 89864 55654 257889999999988 49999999
Q ss_pred cCE--eeeCCCCCeecc
Q 012986 427 DGQ--WKVDPQRESVTK 441 (452)
Q Consensus 427 DGe--W~~DPdnPtVtD 441 (452)
+|. |-..++.-+..+
T Consensus 221 ~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 221 EGLVSLELGVNRELSLD 237 (909)
T ss_pred CCceEEeeCCCceeecC
Confidence 443 877776655544
No 43
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.22 E-value=0.69 Score=40.93 Aligned_cols=54 Identities=24% Similarity=0.412 Sum_probs=37.3
Q ss_pred ecCCceEEEEeeeC---CCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc----eEEEEEEE
Q 012986 371 SGDGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG----TYEIKFIV 426 (452)
Q Consensus 371 ~g~AkeV~IaGSFN---nWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG----~YEYKFIV 426 (452)
-.++++|+|+|+-. +|.+. ++|....-. ........|.+.+.||+| .++|||+.
T Consensus 12 ~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt--~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 12 ADRDTELLVLGSRPELGSWDPQRAVPMRPARKA--LSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred cCCCCEEEEEECchhcCCCCccccccccccccc--ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 34689999999864 89864 566642000 000134579999999986 69999998
No 44
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=92.72 E-value=0.39 Score=42.56 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=53.9
Q ss_pred eEEEEEEe----cCCceEEEEeeeCCCccc-----cccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEEcCE----
Q 012986 364 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIVDGQ---- 429 (452)
Q Consensus 364 ~~VTF~W~----g~AkeV~IaGSFNnWq~~-----IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIVDGe---- 429 (452)
..|||-|. +....|.|-|..|+.+.+ ..|.+. .+..+|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl--------~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~ 73 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL--------PGTDVWYWTYRLPADWRGSYSFIPDVPDARG 73 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE---------TTSSEEEEEEEEETT-EEEEEEEEES-T-HH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC--------CCCceEEEEEEECcccEEEEEEEecCcccch
Confidence 46999999 346889999999999653 467776 367999999999999 89999997533
Q ss_pred ------------eeeCCCCCeec-c----CCccceEEE
Q 012986 430 ------------WKVDPQRESVT-K----GGICNNILR 450 (452)
Q Consensus 430 ------------W~~DPdnPtVt-D----~GnvNNVL~ 450 (452)
=+.||-||... . .|..-++++
T Consensus 74 ~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 74 AQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp HHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred hHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 25699999765 2 267777765
No 45
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.17 E-value=0.39 Score=53.44 Aligned_cols=55 Identities=22% Similarity=0.368 Sum_probs=41.9
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEcCEe
Q 012986 365 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVDGQW 430 (452)
Q Consensus 365 ~VTF~W~g~-AkeV~IaGSFNnWq~----~IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVDGeW 430 (452)
.|+|+..++ |..|.|. -|++|.. .++|.+ +..|+|++.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~---------~~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPE---------RTDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc---------CCCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 588987776 9999986 6766542 367876 36799999995 778875 999999854
No 46
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=89.77 E-value=0.83 Score=53.74 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=48.2
Q ss_pred EEEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCcccccCCCcEEEEEE-eCCc-----eEEEEEEEcC----E
Q 012986 365 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRLWSTVLW-LYPG-----TYEIKFIVDG----Q 429 (452)
Q Consensus 365 ~VTF~W~g~-AkeV~IaGS-FNnWq~---~IpMeKd~sss~~~~k~sGvFsttL~-LPPG-----~YEYKFIVDG----e 429 (452)
.++|+..+| |.+|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+| .
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~---------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~ 398 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG---------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKV 398 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC---------CCCEEEEEECCcccCcccCCCceEEEEEECCCceE
Confidence 378987766 999999984 455653 4789873 6899999986 4443 3788888876 4
Q ss_pred eeeCCCCCee
Q 012986 430 WKVDPQRESV 439 (452)
Q Consensus 430 W~~DPdnPtV 439 (452)
.+.||-...+
T Consensus 399 ~~~DPYA~al 408 (1111)
T TIGR02102 399 LALDPYAKSL 408 (1111)
T ss_pred EEeChhheEE
Confidence 5778876543
No 47
>PLN02950 4-alpha-glucanotransferase
Probab=89.41 E-value=1.9 Score=49.84 Aligned_cols=67 Identities=18% Similarity=0.402 Sum_probs=47.3
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCccc--cccCCCCCCCcccccCCCcEEEEEEeCCc-eEEEEEEE---cCE--
Q 012986 364 EVVEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRLWSTVLWLYPG-TYEIKFIV---DGQ-- 429 (452)
Q Consensus 364 ~~VTF~W~g---~AkeV~IaGSFN---nWq~~--IpMeKd~sss~~~~k~sGvFsttL~LPPG-~YEYKFIV---DGe-- 429 (452)
..|+|..+. .|++|+|+|+-. +|... ++|.... ..+...|++++.||+| ..+|||++ +|.
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~------~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi 82 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVH------QGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVL 82 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceeccccc------CCCCCeEEEEEEecCCCeEEEEEEEEeCCCcee
Confidence 567776553 489999999985 79854 6785421 0134589999999988 69999995 343
Q ss_pred -eeeCCCC
Q 012986 430 -WKVDPQR 436 (452)
Q Consensus 430 -W~~DPdn 436 (452)
|-..++.
T Consensus 83 ~WE~g~NR 90 (909)
T PLN02950 83 RWEAGKKR 90 (909)
T ss_pred eeecCCCe
Confidence 7666543
No 48
>PLN02960 alpha-amylase
Probab=89.09 E-value=1.2 Score=51.40 Aligned_cols=59 Identities=19% Similarity=0.369 Sum_probs=42.3
Q ss_pred EEEEE-EecCCceEEEEeeeCCCccc-cccCCCCCCCcccccCCCcEEEEE--EeCCc----e---EEEEEEEc
Q 012986 365 VVEIQ-YSGDGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRLWSTVL--WLYPG----T---YEIKFIVD 427 (452)
Q Consensus 365 ~VTF~-W~g~AkeV~IaGSFNnWq~~-IpMeKd~sss~~~~k~sGvFsttL--~LPPG----~---YEYKFIVD 427 (452)
-|.|. |..+|..+.|+|+||||.+. ..|.+ +..++.+-|+|.+++ .|.+| . -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE----GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc----ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 56674 66679999999999999986 34442 112335789999998 47776 2 36888776
No 49
>PRK03705 glycogen debranching enzyme; Provisional
Probab=88.98 E-value=0.89 Score=50.55 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=41.5
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEcCEe
Q 012986 365 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVDGQW 430 (452)
Q Consensus 365 ~VTF~W~g~-AkeV~IaGSFNnWq--~~IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVDGeW 430 (452)
.|+|+..++ |+.|.|.. |+++. ..++|.+ +..|+|++.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~---------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA---------RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee---------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 489987766 99999997 77653 2467875 36799999985 66775 4999999853
No 50
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=87.84 E-value=2.1 Score=49.47 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=48.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEc------CE----
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVD------GQ---- 429 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq--~~IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVD------Ge---- 429 (452)
..|+|+..+| |+.|.|.+.+++|. ..++|.++ ...|+|++.+. ..+|.| |+|.|+ |+
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~--------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v~~~ 205 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD--------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKVETY 205 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC--------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeECCe
Confidence 4689987776 99999997776663 23788864 25799999985 456653 777775 54
Q ss_pred eeeCCCCCeec
Q 012986 430 WKVDPQRESVT 440 (452)
Q Consensus 430 W~~DPdnPtVt 440 (452)
.+.||-...+.
T Consensus 206 ~v~DPYA~als 216 (898)
T TIGR02103 206 LVTDPYSVSLS 216 (898)
T ss_pred EEeCcCcceEc
Confidence 37788776554
No 51
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=86.39 E-value=3.6 Score=34.07 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=39.0
Q ss_pred eEEEEEEec---CCceEEEEeeeCC--Ccc-ccccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEE
Q 012986 364 EVVEIQYSG---DGEIVEVAGSFNG--WHH-RIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIV 426 (452)
Q Consensus 364 ~~VTF~W~g---~AkeV~IaGSFNn--Wq~-~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIV 426 (452)
.+|+|+.+. +...|.|.-.-+. |.. .++|.+.... .....|.+++.++.|.+.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~-----~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSD-----ELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeC-----CceeEEEEEEecCCcEEEEEEEE
Confidence 456666653 3688888765543 222 4789875311 12246999999888999999999
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=80.44 E-value=5.9 Score=47.25 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=43.0
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEcCEe
Q 012986 364 EVVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVDGQW 430 (452)
Q Consensus 364 ~~VTF~W~g~-AkeV~IaGSFNnWq~----~IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVDGeW 430 (452)
..|+|+...+ |+.|.|. .|+.|.. .++|.. +..|+|++.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~---------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG---------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC---------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3589987665 9999997 8998863 256643 36799998875 78887 5999999854
No 53
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=65.46 E-value=11 Score=32.39 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=42.5
Q ss_pred EEEEEEe---cCCceEEEE-eeeCCC----c-cccccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEE--cCE-eee
Q 012986 365 VVEIQYS---GDGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIV--DGQ-WKV 432 (452)
Q Consensus 365 ~VTF~W~---g~AkeV~Ia-GSFNnW----q-~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIV--DGe-W~~ 432 (452)
+|+|+++ ++.++|.|. |+-..| . ..++|.+..+ ...-..|.+++.++..+..|.|.| +|+ |..
T Consensus 22 ~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~-----~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y 96 (120)
T PF02903_consen 22 TLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIAS-----DELFDYYEATLKLPEKRLRYYFELEDGGETYYY 96 (120)
T ss_dssp EEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEE-----ESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEe-----CCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 4555554 357899986 666666 1 2377887521 134568899999999989999988 344 555
Q ss_pred CCCC
Q 012986 433 DPQR 436 (452)
Q Consensus 433 DPdn 436 (452)
+..-
T Consensus 97 ~~~G 100 (120)
T PF02903_consen 97 GERG 100 (120)
T ss_dssp ETTE
T ss_pred eCCc
Confidence 5443
No 54
>PLN03244 alpha-amylase; Provisional
Probab=65.02 E-value=12 Score=43.44 Aligned_cols=60 Identities=18% Similarity=0.372 Sum_probs=41.0
Q ss_pred EEEE-EEecCCceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEE--eCCc----eE---EEEEEEc
Q 012986 365 VVEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLW--LYPG----TY---EIKFIVD 427 (452)
Q Consensus 365 ~VTF-~W~g~AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~--LPPG----~Y---EYKFIVD 427 (452)
.++| .|..+|.--.|+|+||||.+.-..-|... .++.+-|+|.+.++ |.+| .| ||.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGH---FGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCcccccccccc---ccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 4555 57778999999999999998643333211 11247799999984 7766 33 6777654
No 55
>PLN02877 alpha-amylase/limit dextrinase
Probab=63.54 E-value=24 Score=41.61 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=42.5
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCcccccCCCcEEEEEE-eCCceEEEEEEEc------CE--
Q 012986 365 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRLWSTVLW-LYPGTYEIKFIVD------GQ-- 429 (452)
Q Consensus 365 ~VTF~W~g~-AkeV~IaGSFNnWq~-----~IpMeKd~sss~~~~k~sGvFsttL~-LPPG~YEYKFIVD------Ge-- 429 (452)
.++|+..+| |..|.|.- |++|.. .++|. ...|+|++.+. ...|. .|+|.|+ |.
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~----------~~~GVWsv~v~~~~~G~-~Y~Y~V~v~~p~~g~~~ 290 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK----------ESNGVWSVEGPKSWEGC-YYVYEVSVYHPSTGKVE 290 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc----------CCCCEEEEEeccCCCCC-eeEEEEeecccCCCccc
Confidence 688987766 99999984 665532 24565 26899999986 34563 4777775 33
Q ss_pred --eeeCCCCCeec
Q 012986 430 --WKVDPQRESVT 440 (452)
Q Consensus 430 --W~~DPdnPtVt 440 (452)
.+.||-...+.
T Consensus 291 ~~~v~DPYA~als 303 (970)
T PLN02877 291 TCYANDPYARGLS 303 (970)
T ss_pred ccccCCccceEEe
Confidence 25677765544
No 56
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=56.85 E-value=13 Score=42.60 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=30.3
Q ss_pred EEEEEec-CCceEEEEeeeCCCccc-cccC-CCCCCCcccccCCCcEEEEEE
Q 012986 366 VEIQYSG-DGEIVEVAGSFNGWHHR-IKMD-PLPSSSIIEPIRSRLWSTVLW 414 (452)
Q Consensus 366 VTF~W~g-~AkeV~IaGSFNnWq~~-IpMe-Kd~sss~~~~k~sGvFsttL~ 414 (452)
|.|+-.+ .+..|.++|+||+|... ..|. + ...|.|++.+.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k---------~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPK---------DDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCcc---------cccceeEEecC
Confidence 7887554 48999999999999874 2333 2 37899998876
No 57
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=54.88 E-value=30 Score=28.73 Aligned_cols=59 Identities=25% Similarity=0.276 Sum_probs=39.4
Q ss_pred ceEEEEEEecC---CceEEEEeeeC-CCccccccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEE-c-CEeeeC
Q 012986 363 LEVVEIQYSGD---GEIVEVAGSFN-GWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 433 (452)
Q Consensus 363 L~~VTF~W~g~---AkeV~IaGSFN-nWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIV-D-GeW~~D 433 (452)
--.|.+.+.++ -..|+|.+.-. .| .+|.+. -..+|.+.-.++.|-+.+|+-. | |+|..-
T Consensus 13 ~l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~---------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 13 YLAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS---------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE---------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC---------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 34577777765 36799995544 48 589874 4569998877777889999988 7 888764
No 58
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=49.98 E-value=29 Score=30.10 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=40.5
Q ss_pred EEEEEecC--CceEEEEeeeCCCccccccCCCCCC---CcccccCCCcEEEEEEeCCc--------eEEEEEEEcCE--e
Q 012986 366 VEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSS---SIIEPIRSRLWSTVLWLYPG--------TYEIKFIVDGQ--W 430 (452)
Q Consensus 366 VTF~W~g~--AkeV~IaGSFNnWq~~IpMeKd~ss---s~~~~k~sGvFsttL~LPPG--------~YEYKFIVDGe--W 430 (452)
.++....- .+.|.|.=+||+|.....+.-.... ..........|...+.||+. .+-.+|.|+|+ |
T Consensus 23 G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~eyW 102 (113)
T PF03370_consen 23 GTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEYW 102 (113)
T ss_dssp EEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEEE
T ss_pred EEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEEe
Confidence 34444432 5889999999999864332211000 00001344688888888743 57889999996 6
Q ss_pred eeCCC
Q 012986 431 KVDPQ 435 (452)
Q Consensus 431 ~~DPd 435 (452)
-.+..
T Consensus 103 DNN~g 107 (113)
T PF03370_consen 103 DNNNG 107 (113)
T ss_dssp ESTTT
T ss_pred cCCCc
Confidence 55433
No 59
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=44.01 E-value=65 Score=29.54 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=35.7
Q ss_pred CCCceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEEeCCceEEEE
Q 012986 360 LSGLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIK 423 (452)
Q Consensus 360 LsgL~~VTF~W~g~-AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYK 423 (452)
...--+|+|.|... +.+|...++..-|.. ..+.- ..+-.|..++.- ||.|.|+
T Consensus 58 v~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~-~~~~~---------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 58 VKPGDTVTWVNTDSVGHNVTAVGGMDPEGS-GTLKA---------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred ECCCCEEEEEECCCCCceEEEeCCCCcccc-ccccc---------CCCcceEEEecc-cceEEEE
Confidence 33345799999987 999999998855543 22221 234566666655 9999986
No 60
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=43.80 E-value=25 Score=27.05 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHhcCCCCC-CCCChHHHHHhc
Q 012986 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHG 92 (452)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~-~vps~kel~~hg 92 (452)
+.++..|++-+.+-.+|+| .+||..+|.++=
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~ 34 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERY 34 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHh
Confidence 4678899999999999998 789999999863
No 61
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=43.60 E-value=28 Score=39.42 Aligned_cols=63 Identities=30% Similarity=0.350 Sum_probs=47.8
Q ss_pred hhhhhccchhh-------hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhcccchH
Q 012986 289 SEARRRENQLE-------IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDE 351 (452)
Q Consensus 289 ~~~~~~~~~~e-------~~~~~~m~~qkele~~r~k~q~e~~K~aLa~~~~k~~~ei~eA~kli~eK~~ 351 (452)
+|+.|.+=+.| |+++|..+-|+++|+++||.+||.+.-++.-+....--++.-...|+-.+.+
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~p 167 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIP 167 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCc
Confidence 55555555555 4678899999999999999999999988877766666666666666666555
No 62
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=39.16 E-value=40 Score=24.29 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCCCC-CCCChHHHHHhchhhH
Q 012986 64 LYNDLREFLSTVGLSES-HVPSMKELSAHGRDDL 96 (452)
Q Consensus 64 l~~d~~ef~s~~~lp~~-~vps~kel~~hgr~dl 96 (452)
++..|+..+....++++ .+||.+||+++=-...
T Consensus 1 i~~~l~~~i~~~~~~~~~~l~s~~~la~~~~vs~ 34 (60)
T smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSR 34 (60)
T ss_pred CHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCH
Confidence 35667777777777655 6899999998754443
No 63
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=38.90 E-value=48 Score=31.87 Aligned_cols=32 Identities=28% Similarity=0.688 Sum_probs=20.1
Q ss_pred CCCccccccCCCCCCCcccccCCCcEEEEEEe-CCceEEEEEE
Q 012986 384 NGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWL-YPGTYEIKFI 425 (452)
Q Consensus 384 NnWq~~IpMeKd~sss~~~~k~sGvFsttL~L-PPG~YEYKFI 425 (452)
..|+. +||... ++..|.+.+.+ .+|.|+|+..
T Consensus 55 ~~w~~-vpM~~~---------gnDrW~a~f~~~~~G~~~f~Ve 87 (187)
T PF11896_consen 55 REWQE-VPMTPL---------GNDRWEASFTPDRPGRYEFRVE 87 (187)
T ss_dssp -B-----B-EES---------TS-EEEEEEE--SSEEEEEEEE
T ss_pred Cccee-eccccC---------CCCEEEEEEECCCceeEEEEEE
Confidence 45874 899973 78999999987 5899999875
No 64
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=37.49 E-value=69 Score=34.17 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=30.0
Q ss_pred EEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEE--eCCceEEEEEEEcCE
Q 012986 378 EVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLW--LYPGTYEIKFIVDGQ 429 (452)
Q Consensus 378 ~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~--LPPG~YEYKFIVDGe 429 (452)
.+.|+|.+= ...+.-. ...|+|+..+. .+||+|+.++.+||.
T Consensus 152 ~vvg~f~Dd--G~g~DE~--------p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFEDD--GEGLDER--------PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeeccC--CccCCCC--------CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 467887533 2344322 47899998764 589999999999985
No 65
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=33.85 E-value=30 Score=25.72 Aligned_cols=38 Identities=26% Similarity=0.570 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHh--chhhHHHHHHhhhHHHH
Q 012986 67 DLREFLSTVGLSESHVPSMKELSAH--GRDDLANIVRRRGYKFI 108 (452)
Q Consensus 67 d~~ef~s~~~lp~~~vps~kel~~h--gr~dlan~vrrrgyk~i 108 (452)
+++.|+..+. .=|..++-... -..+++.+.|..||.|=
T Consensus 5 ~l~~Fl~~~~----~d~~l~~~l~~~~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 5 SLKAFLEKVK----SDPELREQLKACQNPEEVVALAREAGYDFT 44 (49)
T ss_pred HHHHHHHHHh----cCHHHHHHHHhcCCHHHHHHHHHHcCCCCC
Confidence 3455555543 22333333222 55678889999999874
No 66
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=32.84 E-value=1.1e+02 Score=28.12 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCCC-CCCChHHHHHhchhhHHHHHHhhhHHHHHHHHhCCCCCCCCcccccccc
Q 012986 63 ELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSL 129 (452)
Q Consensus 63 ~l~~d~~ef~s~~~lp~~-~vps~kel~~hgr~dlan~vrrrgyk~i~~ll~~~~~~~~n~~~~e~~~ 129 (452)
-+++-|++=+..=-|+|| +|||++||-.+=.+-.. -| .|+|+-..+.===-+.-+..-|+.|...
T Consensus 15 QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpn-Tv-~raY~eLE~eG~i~t~rg~G~fV~~~~~ 80 (125)
T COG1725 15 QIANQIKEQIASGELKPGDKLPSVRELAKDLGVNPN-TV-QRAYQELEREGIVETKRGKGTFVTEDAK 80 (125)
T ss_pred HHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHH-HH-HHHHHHHHHCCCEEEecCeeEEEcCCch
Confidence 455666666666666666 69999999877666553 34 4578654432000113344446665533
No 67
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=32.66 E-value=76 Score=22.76 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHhchhhHHHHHHh
Q 012986 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (452)
Q Consensus 66 ~d~~ef~s~~~lp~~~vps~kel~~hgr~dlan~vrr 102 (452)
+||++|+...|+|...-. .-|++|-+.||.
T Consensus 7 ~~L~~wL~~~gi~~~~~~-------~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-------KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-------CCHHHHHHHHHH
Confidence 689999999999876654 456777777764
No 68
>PRK10785 maltodextrin glucosidase; Provisional
Probab=32.41 E-value=1.6e+02 Score=32.49 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=35.1
Q ss_pred CceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEEeC--CceEEEEEEE--cCE
Q 012986 374 GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLY--PGTYEIKFIV--DGQ 429 (452)
Q Consensus 374 AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LP--PG~YEYKFIV--DGe 429 (452)
...|.|.=.+++-...++|.+.... .....|.+++.++ ++++.|.|.+ +|+
T Consensus 33 ~~~v~l~~~~~~~~~~~~m~~~~~~-----~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 33 PQRVMLRCEPDNEEYLLPMEKQRSQ-----PQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred eEEEEEEEEcCCCEEEEEeEEeecC-----CCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 5788887666665445789876321 1234699999886 7889999988 554
No 69
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=32.18 E-value=15 Score=31.05 Aligned_cols=13 Identities=62% Similarity=1.595 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeEEEeec
Q 012986 19 LWQWHPPRKHLSFTICCAS 37 (452)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (452)
+||||| |||.++.
T Consensus 47 ~~q~HP------FTIas~~ 59 (105)
T PF08022_consen 47 FWQWHP------FTIASSP 59 (105)
T ss_dssp -------------------
T ss_pred cccccc------cEeeccC
Confidence 799998 7775443
No 70
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.56 E-value=36 Score=37.85 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=24.7
Q ss_pred CCCcEEEEEEeCCc-eEEEEEEEc---CEeeeCCCC
Q 012986 405 RSRLWSTVLWLYPG-TYEIKFIVD---GQWKVDPQR 436 (452)
Q Consensus 405 ~sGvFsttL~LPPG-~YEYKFIVD---GeW~~DPdn 436 (452)
..|.|.+.+.++|| .|.|+|.|+ |.+.+-+..
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~ 131 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHV 131 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCCcceeEEEeecc
Confidence 35688899999999 799999999 444444443
No 71
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=30.19 E-value=50 Score=27.27 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCCCCCCChHHHHHhchhhHHHHHHhhhHHHHHHH
Q 012986 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (452)
Q Consensus 77 lp~~~vps~kel~~hgr~dlan~vrrrgyk~i~~l 111 (452)
+|-.|+++..||.+..+.+|+.+++ ++.+.+++.
T Consensus 42 iPk~h~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 75 (104)
T cd01278 42 IPKEHIASLKALTKEDVPLLEHMET-VGREKLLRS 75 (104)
T ss_pred EecCCCCChHHCCHhHHHHHHHHHH-HHHHHHHHH
Confidence 5778999999999999999999988 777766554
No 72
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.07 E-value=52 Score=36.95 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=22.7
Q ss_pred eCCceEEEEEEEcCEeee---CCCCCeecc
Q 012986 415 LYPGTYEIKFIVDGQWKV---DPQRESVTK 441 (452)
Q Consensus 415 LPPG~YEYKFIVDGeW~~---DPdnPtVtD 441 (452)
-+.|.|+|||-++|+|+. |...|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 457999999999999954 888898764
No 73
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.05 E-value=52 Score=24.77 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=13.5
Q ss_pred EEeCCceEEEEEEE---cCEeeeCC
Q 012986 413 LWLYPGTYEIKFIV---DGQWKVDP 434 (452)
Q Consensus 413 L~LPPG~YEYKFIV---DGeW~~DP 434 (452)
..||||.|.++-.+ +|.|..++
T Consensus 34 ~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 34 TNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp ES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EeCCCEEEEEEEEEECCCCCcCccc
Confidence 47999999988777 47887765
No 74
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=27.21 E-value=1.3e+02 Score=26.50 Aligned_cols=28 Identities=25% Similarity=0.675 Sum_probs=20.6
Q ss_pred CCCcEEEEEEeCCceEEEEEEEcCEeeeCCCC
Q 012986 405 RSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQR 436 (452)
Q Consensus 405 ~sGvFsttL~LPPG~YEYKFIVDGeW~~DPdn 436 (452)
..-.|.+. |.|-|+|.|. +|.|+++-+.
T Consensus 56 ~~QIWlas---~sG~~hf~~~-~~~W~~~r~g 83 (105)
T PRK00446 56 LHELWLAA---KSGGFHFDYK-DGEWICDRSG 83 (105)
T ss_pred hhheeEec---CCCCccceec-CCeEEECCCC
Confidence 44677776 4687888885 9999987443
No 75
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=27.02 E-value=1.1e+02 Score=33.43 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=35.8
Q ss_pred HHhhhcchhhhhcccchH-----HHHHHHhhCCCceEEEEEEecCCceEEEEeeeCC
Q 012986 334 KAVTEINKAEKLISDKDE-----ELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNG 385 (452)
Q Consensus 334 k~~~ei~eA~kli~eK~~-----~LdaAe~aLsgL~~VTF~W~g~AkeV~IaGSFNn 385 (452)
....++...++.+..|-. .+.-...+..+.+|+.+.-...-.++.++|||.|
T Consensus 141 re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG 197 (459)
T KOG0272|consen 141 RERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSG 197 (459)
T ss_pred HHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCC
Confidence 333455555444433332 4445566678889999998888899999999997
No 76
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=26.85 E-value=1e+02 Score=26.36 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=25.0
Q ss_pred CCCcEEEEEEeCCceEEEEEEEcCEeeeCCCCCe
Q 012986 405 RSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 438 (452)
Q Consensus 405 ~sGvFsttL~LPPG~YEYKFIVDGeW~~DPdnPt 438 (452)
+.|.=++.+.|+||+|....+. |.+.+-|..|-
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 3456678899999999999887 66666666654
No 77
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=24.90 E-value=2.2e+02 Score=25.42 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=24.6
Q ss_pred eEEEEEEecCCceEEEE-eeeCCCccccccCCCCCCCcccccCCCcEEEEEEeCCceEEEE
Q 012986 364 EVVEIQYSGDGEIVEVA-GSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIK 423 (452)
Q Consensus 364 ~~VTF~W~g~AkeV~Ia-GSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYK 423 (452)
-+|+|+|...+..|... |... +.. -.+. ...+..|+.++. .||.|.|.
T Consensus 23 dTV~f~n~d~~Hnv~~~~~~~p-~g~-~~~~---------s~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 23 DTVTFVPTDKGHNVETIKGMIP-EGA-EAFK---------SKINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CEEEEEECCCCeeEEEccCCCc-CCc-cccc---------CCCCCEEEEEeC-CCEEEEEE
Confidence 36888887766665542 2111 111 0111 023455666665 57888875
No 78
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=24.63 E-value=92 Score=29.13 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHhcCCCCCC-CCChHHHHHhc
Q 012986 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (452)
Q Consensus 61 ~~~l~~d~~ef~s~~~lp~~~-vps~kel~~hg 92 (452)
=+.+.++|++-+..=.+|+|. +||.+||.++=
T Consensus 10 y~~i~~~l~~~I~~g~~~~G~~LPsE~eLa~~~ 42 (238)
T TIGR02325 10 WRQIADKIEQEIAAGHLRAGDYLPAEMQLAERF 42 (238)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH
Confidence 367889999999888888876 99999999863
No 79
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=23.16 E-value=1.6e+02 Score=24.54 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=9.2
Q ss_pred CcEEEEE-EeCCceEEE
Q 012986 407 RLWSTVL-WLYPGTYEI 422 (452)
Q Consensus 407 GvFsttL-~LPPG~YEY 422 (452)
..++.++ .++||.|+|
T Consensus 74 ~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEF 90 (104)
T ss_dssp -EEEEEEEE-S-EEEEE
T ss_pred CEEEEEEcCCCCEEEEE
Confidence 4455555 789999877
No 80
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=22.84 E-value=1e+02 Score=28.97 Aligned_cols=30 Identities=30% Similarity=0.508 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 012986 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (452)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (452)
..+.++|++-+..=.+++|. +||-+||.++
T Consensus 3 ~qi~~~l~~~I~~g~~~~G~~LPsE~eLa~~ 33 (233)
T TIGR02404 3 EQIYQDLEQKITHGQYKEGDYLPSEHELMDQ 33 (233)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 46788999999988999885 9999999986
No 81
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=22.51 E-value=2.8e+02 Score=21.40 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=26.1
Q ss_pred EEEEEecCCceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEEcC
Q 012986 366 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIVDG 428 (452)
Q Consensus 366 VTF~W~g~AkeV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIVDG 428 (452)
+.+.-.-.+-.|+|-|.+-|=. |+. ...|++|.|.+++.-+|
T Consensus 4 l~V~s~p~gA~V~vdg~~~G~t---p~~------------------~~~l~~G~~~v~v~~~G 45 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIGTT---PLT------------------LKDLPPGEHTVTVEKPG 45 (71)
T ss_pred EEEEEECCCCEEEECCEEeccC---cce------------------eeecCCccEEEEEEECC
Confidence 4455555588999999887722 221 11266777777777776
No 82
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=22.20 E-value=1.4e+02 Score=25.38 Aligned_cols=54 Identities=15% Similarity=0.315 Sum_probs=42.5
Q ss_pred hhhhHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhcccch
Q 012986 297 QLEIDHLKFMLHQ--KEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD 350 (452)
Q Consensus 297 ~~e~~~~~~m~~q--kele~~r~k~q~e~~K~aLa~~~~k~~~ei~eA~kli~eK~ 350 (452)
+-+-+++..|-.. .+-++.+..+-+++|+.++.-++.+..-++.+-+.+|.+..
T Consensus 24 ~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~ 79 (90)
T PF02970_consen 24 EEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEE 79 (90)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCc
Confidence 3345566666666 78888999999999999999999999888888887765433
No 83
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=21.60 E-value=89 Score=25.84 Aligned_cols=34 Identities=21% Similarity=0.556 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHhchhhHHHHHHhhhHH
Q 012986 68 LREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (452)
Q Consensus 68 ~~ef~s~~~lp~~~vps~kel~~hgr~dlan~vrrrgyk 106 (452)
++.|..++| .|+.+.|.+-+-.||..++|+.||.
T Consensus 18 ~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 18 YRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 567778888 8999999999999999999999976
No 84
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=21.59 E-value=97 Score=31.40 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=21.3
Q ss_pred eCCceEEEEEEEcCEeee---CCCCCeec
Q 012986 415 LYPGTYEIKFIVDGQWKV---DPQRESVT 440 (452)
Q Consensus 415 LPPG~YEYKFIVDGeW~~---DPdnPtVt 440 (452)
-+.|.|.++|.++|.|+. |+.-|+..
T Consensus 98 ~~~G~y~vrl~~~G~w~~V~VDd~lP~~~ 126 (318)
T smart00230 98 NYAGIFHFRFWRFGKWVDVVIDDRLPTYN 126 (318)
T ss_pred ccCCEEEEEEEECCEEEEEEecCCCeeeC
Confidence 457999999999999965 88888754
No 85
>PRK10301 hypothetical protein; Provisional
Probab=21.48 E-value=2.5e+02 Score=25.11 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=39.6
Q ss_pred chhhhhcccchHHHHHHHhhCCCceEEEEEEecC----CceEEEEeeeC-CCccccccCCCCCCCcccccCCCcEEEEE-
Q 012986 340 NKAEKLISDKDEELIAAEESLSGLEVVEIQYSGD----GEIVEVAGSFN-GWHHRIKMDPLPSSSIIEPIRSRLWSTVL- 413 (452)
Q Consensus 340 ~eA~kli~eK~~~LdaAe~aLsgL~~VTF~W~g~----AkeV~IaGSFN-nWq~~IpMeKd~sss~~~~k~sGvFsttL- 413 (452)
.-||.-+++-.|.-.+.-. .....|++.+..+ ...|.|.+.-- .|... +.... ..+...+.+.+
T Consensus 24 A~AHa~l~~s~Pa~ga~v~--~~P~~V~L~F~e~v~~~~s~i~v~~~~g~~v~~~-~~~~~-------~~~~~~~~v~l~ 93 (124)
T PRK10301 24 VWAHAHLTHQYPAANAQVT--AAPQALTLNFSEGIEPGFSGATITGPKQENIKTL-PAKRN-------EQDQKQLIVPLA 93 (124)
T ss_pred hhhcccccccCCCCCCccc--cCCCEEEEEcCCCccccccEEEEEcCCCCEeccC-Ccccc-------CCCCcEEEEECC
Confidence 3466666655553222111 1234566666654 45688875421 22211 11110 12344566666
Q ss_pred -EeCCceEEEEEEE
Q 012986 414 -WLYPGTYEIKFIV 426 (452)
Q Consensus 414 -~LPPG~YEYKFIV 426 (452)
.|++|.|.-.|.|
T Consensus 94 ~~L~~G~YtV~Wrv 107 (124)
T PRK10301 94 DSLKPGTYTVDWHV 107 (124)
T ss_pred CCCCCccEEEEEEE
Confidence 3889999999988
No 86
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=21.42 E-value=3.6e+02 Score=24.28 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=17.7
Q ss_pred EeCCceEEEEEEEc---CEeeeCCCC
Q 012986 414 WLYPGTYEIKFIVD---GQWKVDPQR 436 (452)
Q Consensus 414 ~LPPG~YEYKFIVD---GeW~~DPdn 436 (452)
.|+||.|.++-.+- +.|....+-
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F 127 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDF 127 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEE
Confidence 58899999998883 568876543
No 87
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=21.36 E-value=3.5e+02 Score=24.72 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=33.3
Q ss_pred ceEEEEeeeCCCccccccCCCCCCCcccccCCCcEEEEEEeCCceEEEEEEEcCE--eeeCCCCCeec
Q 012986 375 EIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRLWSTVLWLYPGTYEIKFIVDGQ--WKVDPQRESVT 440 (452)
Q Consensus 375 keV~IaGSFNnWq~~IpMeKd~sss~~~~k~sGvFsttL~LPPG~YEYKFIVDGe--W~~DPdnPtVt 440 (452)
-.+.+.|.+..|.. -.++.. +.......+ -.+.||+.|||+ +-.|..+.+..
T Consensus 98 ~~~~~~G~~~~~~~-g~~k~g---------~~~~~~~~~----~v~yyk~~idG~~~~eiD~~n~i~~ 151 (167)
T PF04985_consen 98 VVAVIRGRIKSVDP-GEWKPG---------EKTETSIEF----SVTYYKLEIDGKEIIEIDKLNNIYR 151 (167)
T ss_pred EEEEEEEEEEeeCC-cccCcC---------ccccceEEE----EEEEEEEEECCEEEEEEECccCEEE
Confidence 44677788887764 233321 222333333 267999999997 77788888655
No 88
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=21.10 E-value=4.4e+02 Score=22.36 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=18.8
Q ss_pred CCCcEEEEEEeC---CceEEEEEEE----cCEe
Q 012986 405 RSRLWSTVLWLY---PGTYEIKFIV----DGQW 430 (452)
Q Consensus 405 ~sGvFsttL~LP---PG~YEYKFIV----DGeW 430 (452)
.-|.|..++.++ ||.|...-+. ||.|
T Consensus 56 ~~g~F~~tv~~~~~~~~~g~l~v~~~s~~dGs~ 88 (88)
T PF10648_consen 56 SWGPFEGTVSFPPPPPGKGTLEVFEDSAKDGSW 88 (88)
T ss_pred cccceEEEEEeCCCCCCceEEEEEEeCCCCCCC
Confidence 569999999887 7776665443 5666
No 89
>TIGR03337 phnR transcriptional regulator protein. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii.
Probab=20.90 E-value=1.8e+02 Score=27.03 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHhchh
Q 012986 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRD 94 (452)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~hgr~ 94 (452)
+.+.++|++-+..-++++|. +||.+||.+.=.+
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~lPsE~eLa~~~~V 37 (231)
T TIGR03337 4 LYIKDHLSYQIRAGALLPGDKLPSERDLGERFNT 37 (231)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCC
Confidence 46788999999999998885 9999999987444
No 90
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=20.49 E-value=1.3e+02 Score=28.42 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 012986 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (452)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (452)
+++.++|++-+..=.+++|. +||-+||.+.
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~LPsE~eLa~~ 34 (230)
T TIGR02018 4 QRIKQDILERIRSGEWPPGHRIPSEHELVAQ 34 (230)
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHH
Confidence 46788999999988898886 9999999875
Done!