Query 012987
Match_columns 452
No_of_seqs 272 out of 2064
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0613 Predicted metal-depend 100.0 3.9E-39 8.4E-44 317.2 22.0 249 72-347 1-251 (258)
2 PRK09248 putative hydrolase; V 99.8 1.7E-18 3.6E-23 169.0 16.2 181 72-355 2-202 (246)
3 PRK00448 polC DNA polymerase I 99.8 8.8E-20 1.9E-24 212.7 6.0 209 71-338 331-562 (1437)
4 TIGR00375 conserved hypothetic 99.7 1.7E-16 3.6E-21 163.5 14.7 178 75-355 2-198 (374)
5 PF02811 PHP: PHP domain; Int 99.7 9.6E-16 2.1E-20 139.3 15.7 78 75-158 1-80 (175)
6 smart00481 POLIIIAc DNA polyme 99.7 2.3E-16 4.9E-21 124.2 8.5 64 76-139 1-66 (67)
7 PRK05672 dnaE2 error-prone DNA 99.6 1.1E-14 2.4E-19 167.0 19.5 118 73-207 4-123 (1046)
8 PRK08392 hypothetical protein; 99.6 1.9E-14 4E-19 138.2 15.4 65 75-139 1-72 (215)
9 PRK09532 DNA polymerase III su 99.6 5.1E-14 1.1E-18 159.1 19.5 99 73-173 2-103 (874)
10 PRK07328 histidinol-phosphatas 99.5 3E-13 6.6E-18 133.9 15.8 68 72-139 1-90 (269)
11 PRK07135 dnaE DNA polymerase I 99.5 6.6E-14 1.4E-18 158.8 9.9 90 74-175 3-94 (973)
12 PRK05673 dnaE DNA polymerase I 99.5 9.8E-13 2.1E-17 152.2 18.5 99 74-174 2-104 (1135)
13 TIGR00594 polc DNA-directed DN 99.4 4.4E-12 9.5E-17 145.8 20.1 100 74-175 1-107 (1022)
14 PRK06361 hypothetical protein; 99.4 4E-12 8.6E-17 121.3 16.1 60 79-138 1-68 (212)
15 PRK00912 ribonuclease P protei 99.4 2.4E-12 5.1E-17 125.3 14.0 64 72-138 1-65 (237)
16 PRK06826 dnaE DNA polymerase I 99.4 6.7E-12 1.5E-16 145.2 19.3 101 72-174 3-109 (1151)
17 TIGR01856 hisJ_fam histidinol 99.4 4.7E-12 1E-16 124.4 15.6 65 75-139 1-87 (253)
18 PRK07279 dnaE DNA polymerase I 99.4 1.6E-12 3.4E-17 148.4 12.3 95 73-175 1-97 (1034)
19 PRK06920 dnaE DNA polymerase I 99.4 5.5E-12 1.2E-16 145.2 16.5 96 73-174 2-99 (1107)
20 PRK07945 hypothetical protein; 99.4 2.7E-12 5.7E-17 131.4 12.3 70 70-139 93-176 (335)
21 PRK08123 histidinol-phosphatas 99.4 2.5E-11 5.4E-16 120.5 17.5 68 72-139 1-93 (270)
22 PRK05898 dnaE DNA polymerase I 99.3 2.9E-12 6.4E-17 144.9 11.0 94 73-176 1-96 (971)
23 COG1387 HIS2 Histidinol phosph 99.3 2.6E-11 5.7E-16 118.5 15.3 68 73-140 1-79 (237)
24 PRK07374 dnaE DNA polymerase I 99.3 4.5E-12 9.7E-17 146.7 11.3 101 73-175 2-107 (1170)
25 COG0587 DnaE DNA polymerase II 99.3 4.9E-12 1.1E-16 145.1 11.4 102 72-176 2-105 (1139)
26 PRK08609 hypothetical protein; 99.3 3.5E-11 7.6E-16 131.1 16.8 105 30-139 293-414 (570)
27 TIGR01405 polC_Gram_pos DNA po 99.3 4.6E-12 1E-16 147.0 9.6 72 70-141 100-173 (1213)
28 COG1379 PHP family phosphoeste 99.3 3.7E-11 8.1E-16 119.8 12.7 200 72-368 2-221 (403)
29 PRK05588 histidinol-phosphatas 99.2 4.6E-11 9.9E-16 117.3 11.9 64 74-138 1-75 (255)
30 PRK07329 hypothetical protein; 99.0 1.3E-09 2.9E-14 106.8 11.0 62 74-139 1-78 (246)
31 COG2176 PolC DNA polymerase II 99.0 8.1E-10 1.8E-14 124.6 8.0 72 70-141 332-405 (1444)
32 PRK06740 histidinol-phosphatas 98.8 1.6E-07 3.5E-12 96.2 16.2 27 85-111 58-84 (331)
33 COG4464 CapC Capsular polysacc 98.1 4.5E-05 9.8E-10 73.2 12.0 66 74-139 1-84 (254)
34 PF13263 PHP_C: PHP-associated 96.9 0.00069 1.5E-08 51.8 2.6 29 324-357 6-34 (56)
35 PF12228 DUF3604: Protein of u 90.4 0.23 5E-06 54.6 3.5 49 70-118 4-72 (592)
36 cd01292 metallo-dependent_hydr 86.9 18 0.00039 33.9 13.5 74 252-345 162-238 (275)
37 TIGR00010 hydrolase, TatD fami 86.4 1.3 2.9E-05 42.3 5.5 62 74-137 1-62 (252)
38 PF10566 Glyco_hydro_97: Glyco 82.5 4.2 9.1E-05 41.0 7.2 82 249-348 71-161 (273)
39 COG0084 TatD Mg-dependent DNas 81.0 3.7 8.1E-05 41.0 6.2 61 72-134 1-61 (256)
40 PF01026 TatD_DNase: TatD rela 76.9 4.6 0.0001 39.6 5.4 63 75-138 1-63 (255)
41 PRK13125 trpA tryptophan synth 75.1 6.5 0.00014 38.6 5.9 62 75-138 75-138 (244)
42 PRK10812 putative DNAse; Provi 72.9 7.8 0.00017 38.6 5.9 54 73-127 2-58 (265)
43 COG5016 Pyruvate/oxaloacetate 72.1 14 0.0003 39.5 7.6 51 89-139 99-150 (472)
44 PRK10425 DNase TatD; Provision 70.9 8.6 0.00019 38.2 5.7 53 74-127 1-53 (258)
45 PRK11449 putative deoxyribonuc 70.4 9.3 0.0002 37.9 5.8 55 72-127 3-57 (258)
46 cd01310 TatD_DNAse TatD like p 68.7 12 0.00026 35.6 6.1 59 74-134 1-59 (251)
47 PRK12581 oxaloacetate decarbox 67.2 17 0.00036 39.6 7.3 48 90-137 107-155 (468)
48 COG0613 Predicted metal-depend 65.1 3 6.5E-05 41.5 1.1 78 250-345 97-178 (258)
49 COG1902 NemA NADH:flavin oxido 62.9 17 0.00036 38.2 6.2 25 250-274 82-108 (363)
50 PF06375 BLVR: Bovine leukaemi 60.8 2.8 6E-05 38.8 0.0 20 9-28 83-102 (154)
51 PRK09856 fructoselysine 3-epim 60.0 28 0.00062 33.9 7.0 47 278-341 15-68 (275)
52 PRK09358 adenosine deaminase; 59.7 7.4 0.00016 39.7 2.9 32 70-104 8-39 (340)
53 COG0826 Collagenase and relate 59.7 21 0.00045 37.3 6.2 66 251-341 49-121 (347)
54 cd03309 CmuC_like CmuC_like. P 59.0 65 0.0014 33.1 9.6 46 251-298 198-243 (321)
55 cd01295 AdeC Adenine deaminase 58.0 20 0.00043 37.9 5.9 61 72-134 9-74 (422)
56 cd02930 DCR_FMN 2,4-dienoyl-Co 56.6 26 0.00056 36.3 6.3 25 251-275 77-103 (353)
57 PTZ00124 adenosine deaminase; 56.1 9.8 0.00021 39.9 3.1 32 70-104 33-64 (362)
58 PRK09997 hydroxypyruvate isome 55.6 27 0.00059 34.0 6.0 42 278-338 17-58 (258)
59 PF00962 A_deaminase: Adenosin 54.5 11 0.00024 38.1 3.1 29 72-103 2-30 (331)
60 TIGR03234 OH-pyruv-isom hydrox 54.2 26 0.00057 33.9 5.6 44 278-340 16-59 (254)
61 PRK07228 N-ethylammeline chlor 52.6 38 0.00083 35.7 6.9 64 72-137 56-148 (445)
62 TIGR01501 MthylAspMutase methy 50.5 48 0.001 30.0 6.2 41 88-128 39-81 (134)
63 TIGR00640 acid_CoA_mut_C methy 50.4 32 0.0007 30.7 5.1 43 85-127 37-81 (132)
64 COG2355 Zn-dependent dipeptida 49.8 73 0.0016 32.9 8.1 18 183-200 151-168 (313)
65 PRK13523 NADPH dehydrogenase N 48.4 39 0.00085 35.0 6.0 24 251-274 81-106 (337)
66 PRK10605 N-ethylmaleimide redu 46.1 43 0.00094 35.0 6.0 12 286-297 169-180 (362)
67 PF02679 ComA: (2R)-phospho-3- 45.5 46 0.001 33.1 5.7 67 253-337 56-130 (244)
68 cd02072 Glm_B12_BD B12 binding 44.8 70 0.0015 28.7 6.3 41 88-128 37-79 (128)
69 cd01320 ADA Adenosine deaminas 44.3 21 0.00045 36.0 3.2 30 72-104 2-31 (325)
70 TIGR01430 aden_deam adenosine 44.2 20 0.00044 36.2 3.1 29 73-104 2-30 (324)
71 PRK14042 pyruvate carboxylase 44.1 59 0.0013 36.5 6.9 49 90-138 98-147 (596)
72 cd04747 OYE_like_5_FMN Old yel 43.9 52 0.0011 34.5 6.2 23 252-274 79-103 (361)
73 PRK08508 biotin synthase; Prov 43.6 1.1E+02 0.0023 30.7 8.2 39 254-294 78-117 (279)
74 PRK06256 biotin synthase; Vali 42.3 89 0.0019 31.8 7.5 41 253-295 128-168 (336)
75 cd04735 OYE_like_4_FMN Old yel 41.8 50 0.0011 34.2 5.6 24 251-274 78-103 (353)
76 PRK09989 hypothetical protein; 41.7 58 0.0013 31.7 5.8 40 279-338 18-58 (258)
77 PRK15108 biotin synthase; Prov 41.4 1.3E+02 0.0029 31.1 8.7 40 253-295 113-152 (345)
78 COG0800 Eda 2-keto-3-deoxy-6-p 41.1 1.1E+02 0.0024 29.9 7.4 49 254-303 4-52 (211)
79 cd04734 OYE_like_3_FMN Old yel 40.9 58 0.0013 33.7 5.9 23 252-274 78-102 (343)
80 cd00952 CHBPH_aldolase Trans-o 40.7 1.8E+02 0.0039 29.5 9.4 83 263-368 75-161 (309)
81 PTZ00170 D-ribulose-5-phosphat 39.3 1E+02 0.0022 30.0 7.1 57 72-138 65-123 (228)
82 PLN02905 beta-amylase 39.1 95 0.0021 35.1 7.4 111 280-420 290-412 (702)
83 TIGR00506 ribB 3,4-dihydroxy-2 38.2 81 0.0018 30.5 6.0 58 267-341 129-194 (199)
84 PRK10027 cryptic adenine deami 37.7 50 0.0011 37.0 5.1 61 73-135 85-150 (588)
85 PF02836 Glyco_hydro_2_C: Glyc 37.4 1.1E+02 0.0024 30.4 7.2 42 280-342 40-81 (298)
86 PRK06552 keto-hydroxyglutarate 37.3 46 0.001 32.2 4.3 46 85-135 72-117 (213)
87 COG0399 WecE Predicted pyridox 37.1 1.8E+02 0.004 30.7 8.9 72 249-337 80-153 (374)
88 PRK00014 ribB 3,4-dihydroxy-2- 36.5 93 0.002 30.8 6.2 59 267-342 144-210 (230)
89 PF00724 Oxidored_FMN: NADH:fl 36.3 67 0.0015 33.1 5.6 23 252-274 81-105 (341)
90 cd02931 ER_like_FMN Enoate red 36.0 72 0.0016 33.5 5.8 21 252-272 84-106 (382)
91 cd00954 NAL N-Acetylneuraminic 35.7 2.9E+02 0.0063 27.6 9.9 82 264-368 69-154 (288)
92 PLN02705 beta-amylase 35.5 1.4E+02 0.003 33.7 7.9 56 280-347 272-332 (681)
93 cd02803 OYE_like_FMN_family Ol 35.5 48 0.001 33.5 4.3 13 285-297 150-162 (327)
94 cd02933 OYE_like_FMN Old yello 35.4 78 0.0017 32.7 5.9 22 252-273 78-101 (338)
95 PRK13210 putative L-xylulose 5 35.2 1E+02 0.0022 30.1 6.4 52 279-338 19-70 (284)
96 cd04733 OYE_like_2_FMN Old yel 35.2 82 0.0018 32.3 6.0 44 253-296 84-169 (338)
97 TIGR03849 arch_ComA phosphosul 34.9 1.3E+02 0.0028 29.9 6.9 67 253-337 43-117 (237)
98 PRK01792 ribB 3,4-dihydroxy-2- 34.7 1E+02 0.0022 30.2 6.0 58 267-341 139-204 (214)
99 cd05017 SIS_PGI_PMI_1 The memb 34.6 86 0.0019 26.8 5.2 39 88-132 57-95 (119)
100 TIGR00676 fadh2 5,10-methylene 34.5 4.8E+02 0.01 26.0 16.2 41 92-132 19-63 (272)
101 PF01081 Aldolase: KDPG and KH 34.1 61 0.0013 31.1 4.5 45 85-134 64-108 (196)
102 PRK00910 ribB 3,4-dihydroxy-2- 34.0 1.1E+02 0.0024 30.0 6.2 58 267-341 140-205 (218)
103 TIGR01182 eda Entner-Doudoroff 33.9 52 0.0011 31.8 4.0 45 85-134 64-108 (204)
104 PRK13111 trpA tryptophan synth 33.6 2.6E+02 0.0056 27.9 9.0 53 250-303 103-156 (258)
105 TIGR03128 RuMP_HxlA 3-hexulose 32.9 1.2E+02 0.0025 28.4 6.2 52 72-133 54-108 (206)
106 cd02932 OYE_YqiM_FMN Old yello 32.5 90 0.002 32.0 5.8 23 252-274 78-102 (336)
107 COG3473 Maleate cis-trans isom 32.1 2.1E+02 0.0045 28.3 7.6 77 254-357 88-164 (238)
108 PRK07094 biotin synthase; Prov 32.0 2.2E+02 0.0049 28.6 8.5 41 252-294 104-144 (323)
109 cd02929 TMADH_HD_FMN Trimethyl 31.5 1E+02 0.0022 32.3 6.0 13 286-298 160-172 (370)
110 PRK13209 L-xylulose 5-phosphat 31.1 1.5E+02 0.0032 29.0 6.9 44 278-338 23-75 (283)
111 PLN02161 beta-amylase 31.1 1.6E+02 0.0034 32.6 7.3 57 279-347 120-181 (531)
112 PF01208 URO-D: Uroporphyrinog 31.0 91 0.002 31.6 5.5 46 251-298 220-265 (343)
113 cd04726 KGPDC_HPS 3-Keto-L-gul 30.9 1.7E+02 0.0038 27.0 7.0 43 255-297 42-85 (202)
114 cd00443 ADA_AMPD Adenosine/AMP 30.7 40 0.00087 34.1 2.8 24 73-99 2-25 (305)
115 PLN00197 beta-amylase; Provisi 30.5 1.2E+02 0.0026 33.7 6.4 56 280-347 131-191 (573)
116 PF01261 AP_endonuc_2: Xylose 30.2 44 0.00095 30.4 2.7 44 283-338 2-45 (213)
117 PF13704 Glyco_tranf_2_4: Glyc 29.9 90 0.002 25.3 4.3 33 90-122 7-39 (97)
118 PLN02801 beta-amylase 29.9 2.1E+02 0.0046 31.5 8.1 57 279-347 40-101 (517)
119 PRK01060 endonuclease IV; Prov 29.6 1.7E+02 0.0037 28.6 7.0 20 278-297 14-33 (281)
120 PRK10657 isoaspartyl dipeptida 29.5 1.5E+02 0.0032 30.6 6.8 60 72-133 56-127 (388)
121 TIGR01212 radical SAM protein, 29.4 1.5E+02 0.0032 30.1 6.6 58 236-295 81-143 (302)
122 COG0159 TrpA Tryptophan syntha 29.2 2E+02 0.0044 29.0 7.4 37 279-334 112-148 (265)
123 PF01120 Alpha_L_fucos: Alpha- 28.9 81 0.0018 32.6 4.7 53 84-138 87-160 (346)
124 PRK05904 coproporphyrinogen II 28.9 2.3E+02 0.0049 29.5 8.0 55 237-295 61-119 (353)
125 cd06556 ICL_KPHMT Members of t 28.9 3.1E+02 0.0068 27.1 8.6 71 252-345 113-206 (240)
126 PRK04147 N-acetylneuraminate l 28.8 2.4E+02 0.0052 28.2 8.0 82 264-368 72-156 (293)
127 cd00951 KDGDH 5-dehydro-4-deox 28.5 3.8E+02 0.0083 26.8 9.4 91 250-368 49-148 (289)
128 PRK05628 coproporphyrinogen II 28.2 2.2E+02 0.0049 29.5 7.9 55 237-295 64-124 (375)
129 cd00717 URO-D Uroporphyrinogen 28.2 2.2E+02 0.0047 28.9 7.7 45 251-298 215-260 (335)
130 PTZ00170 D-ribulose-5-phosphat 28.0 2.7E+02 0.0059 27.0 8.0 37 253-289 77-114 (228)
131 TIGR00262 trpA tryptophan synt 27.9 2.7E+02 0.0059 27.6 8.1 53 251-303 102-154 (256)
132 PRK05718 keto-hydroxyglutarate 27.8 2.5E+02 0.0055 27.2 7.6 47 253-300 5-51 (212)
133 PRK08883 ribulose-phosphate 3- 27.6 3.6E+02 0.0079 26.1 8.7 71 252-342 69-139 (220)
134 TIGR02967 guan_deamin guanine 27.6 1.6E+02 0.0036 30.4 6.8 40 95-136 97-138 (401)
135 cd01306 PhnM PhnM is believed 27.4 7E+02 0.015 25.7 16.5 166 71-302 78-257 (325)
136 PRK02261 methylaspartate mutas 27.4 1.9E+02 0.0042 25.8 6.3 47 87-133 40-91 (137)
137 PRK03620 5-dehydro-4-deoxygluc 27.3 4.5E+02 0.0098 26.5 9.7 90 250-367 56-154 (303)
138 cd02071 MM_CoA_mut_B12_BD meth 27.0 1.3E+02 0.0028 26.1 5.0 42 85-126 34-77 (122)
139 PRK08309 short chain dehydroge 26.9 37 0.00079 31.7 1.6 26 424-449 146-171 (177)
140 TIGR02631 xylA_Arthro xylose i 26.6 1.3E+02 0.0028 31.8 5.7 48 278-338 34-86 (382)
141 KOG2422 Uncharacterized conser 26.3 29 0.00063 38.6 0.9 26 98-123 239-264 (665)
142 PRK06294 coproporphyrinogen II 26.3 2.3E+02 0.0051 29.4 7.6 55 237-295 63-119 (370)
143 PF09692 Arb1: Argonaute siRNA 26.1 29 0.00062 37.0 0.8 15 408-422 360-374 (396)
144 TIGR00433 bioB biotin syntheta 26.1 3E+02 0.0065 27.1 8.1 37 254-293 101-137 (296)
145 PRK13125 trpA tryptophan synth 25.9 3.3E+02 0.0071 26.6 8.2 53 251-303 88-143 (244)
146 TIGR00542 hxl6Piso_put hexulos 25.8 1.5E+02 0.0032 29.1 5.8 52 279-338 19-70 (279)
147 PRK13813 orotidine 5'-phosphat 25.6 1.3E+02 0.0029 28.4 5.2 59 72-137 55-116 (215)
148 PF07643 DUF1598: Protein of u 25.5 87 0.0019 26.2 3.3 16 212-227 51-66 (84)
149 PLN02803 beta-amylase 25.1 1.7E+02 0.0038 32.4 6.4 113 280-421 111-234 (548)
150 COG1082 IolE Sugar phosphate i 25.1 2E+02 0.0043 27.7 6.5 47 85-131 12-62 (274)
151 PF14871 GHL6: Hypothetical gl 25.0 1.1E+02 0.0024 27.4 4.2 49 89-137 1-67 (132)
152 PRK00115 hemE uroporphyrinogen 24.9 2.6E+02 0.0057 28.7 7.6 45 251-298 224-269 (346)
153 PF06135 DUF965: Bacterial pro 24.9 96 0.0021 25.7 3.4 40 217-262 24-63 (79)
154 TIGR00683 nanA N-acetylneurami 24.8 3E+02 0.0065 27.6 7.9 95 251-368 51-154 (290)
155 cd01312 Met_dep_hydrolase_D Me 24.8 8E+02 0.017 25.5 13.0 70 257-345 220-292 (381)
156 TIGR01464 hemE uroporphyrinoge 24.6 2.6E+02 0.0057 28.4 7.5 45 251-298 218-263 (338)
157 PLN03059 beta-galactosidase; P 24.4 1.1E+02 0.0023 35.8 4.9 61 270-338 51-116 (840)
158 PF13380 CoA_binding_2: CoA bi 24.3 1.3E+02 0.0028 26.0 4.5 41 91-134 69-110 (116)
159 PRK05473 hypothetical protein; 24.3 1E+02 0.0022 25.9 3.6 41 216-262 26-66 (86)
160 PRK09228 guanine deaminase; Pr 24.2 2E+02 0.0043 30.5 6.7 39 97-137 124-164 (433)
161 PRK10340 ebgA cryptic beta-D-g 24.1 2E+02 0.0043 34.5 7.3 45 280-345 359-405 (1021)
162 PRK02083 imidazole glycerol ph 24.0 3.1E+02 0.0067 26.7 7.6 28 85-112 150-177 (253)
163 TIGR03551 F420_cofH 7,8-dideme 23.7 1.6E+02 0.0034 30.3 5.7 70 253-339 105-198 (343)
164 cd03465 URO-D_like The URO-D _ 23.7 2.7E+02 0.0057 27.9 7.3 67 250-343 207-275 (330)
165 TIGR00262 trpA tryptophan synt 23.7 1.8E+02 0.0038 28.9 5.8 19 279-297 105-123 (256)
166 COG2185 Sbm Methylmalonyl-CoA 23.5 1.8E+02 0.0039 26.7 5.3 44 87-130 49-94 (143)
167 PRK07379 coproporphyrinogen II 23.4 3.2E+02 0.007 28.8 8.1 55 237-295 71-131 (400)
168 TIGR00539 hemN_rel putative ox 23.2 3E+02 0.0066 28.3 7.7 28 266-295 89-116 (360)
169 TIGR02313 HpaI-NOT-DapA 2,4-di 23.1 3.3E+02 0.0072 27.4 7.8 50 251-300 50-106 (294)
170 TIGR03234 OH-pyruv-isom hydrox 23.1 2.1E+02 0.0046 27.5 6.2 44 87-131 13-56 (254)
171 PF08288 PIGA: PIGA (GPI ancho 23.0 79 0.0017 26.8 2.7 31 77-111 54-84 (90)
172 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.9 4.6E+02 0.01 26.1 8.7 43 279-338 94-136 (275)
173 PRK09314 bifunctional 3,4-dihy 22.7 1.9E+02 0.0041 30.3 6.0 58 267-341 128-193 (339)
174 TIGR02336 1,3-beta-galactosyl- 22.5 2.3E+02 0.005 32.4 6.9 43 252-294 291-333 (719)
175 PRK06380 metal-dependent hydro 22.3 2.4E+02 0.0051 29.5 6.8 61 72-136 54-142 (418)
176 PLN02522 ATP citrate (pro-S)-l 22.2 2.1E+02 0.0045 32.3 6.6 69 251-338 67-135 (608)
177 PRK03353 ribB 3,4-dihydroxy-2- 22.2 2E+02 0.0043 28.1 5.7 18 324-341 187-204 (217)
178 PF07894 DUF1669: Protein of u 22.1 1.8E+02 0.0038 29.8 5.5 35 72-107 118-152 (284)
179 PRK15447 putative protease; Pr 22.0 3.2E+02 0.0069 27.7 7.5 48 251-298 48-97 (301)
180 cd05014 SIS_Kpsf KpsF-like pro 22.0 1E+02 0.0022 26.2 3.4 26 87-112 60-85 (128)
181 PRK08599 coproporphyrinogen II 22.0 3.9E+02 0.0084 27.7 8.3 43 252-296 69-117 (377)
182 PRK07114 keto-hydroxyglutarate 21.7 1E+02 0.0023 30.1 3.7 44 86-134 76-119 (222)
183 PRK03892 ribonuclease P protei 21.6 3.9E+02 0.0084 26.2 7.4 88 242-345 83-178 (216)
184 cd03174 DRE_TIM_metallolyase D 21.6 3.7E+02 0.008 25.8 7.6 49 91-139 77-140 (265)
185 PRK06552 keto-hydroxyglutarate 21.5 3.5E+02 0.0076 26.2 7.3 45 255-300 5-49 (213)
186 PRK04302 triosephosphate isome 21.3 4.8E+02 0.01 25.0 8.2 39 260-298 51-94 (223)
187 PRK00748 1-(5-phosphoribosyl)- 21.2 4.3E+02 0.0093 25.1 7.9 51 88-138 30-85 (233)
188 PF13594 Amidohydro_5: Amidohy 21.1 74 0.0016 24.5 2.1 31 74-104 36-67 (68)
189 PRK07259 dihydroorotate dehydr 21.1 7.2E+02 0.016 24.8 9.8 47 252-298 144-191 (301)
190 PRK06015 keto-hydroxyglutarate 21.0 1.1E+02 0.0024 29.5 3.6 45 85-134 60-104 (201)
191 COG0329 DapA Dihydrodipicolina 21.0 2.9E+02 0.0062 28.1 6.9 42 260-301 67-111 (299)
192 COG4130 Predicted sugar epimer 21.0 8.4E+02 0.018 24.3 12.8 138 87-268 16-168 (272)
193 PRK13111 trpA tryptophan synth 20.8 1.8E+02 0.004 29.0 5.3 50 87-137 103-152 (258)
194 PRK09057 coproporphyrinogen II 20.7 3.8E+02 0.0081 28.0 7.9 55 237-295 60-120 (380)
195 PF03659 Glyco_hydro_71: Glyco 20.3 1.4E+02 0.003 31.7 4.5 48 91-138 20-71 (386)
No 1
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=100.00 E-value=3.9e-39 Score=317.23 Aligned_cols=249 Identities=37% Similarity=0.507 Sum_probs=227.4
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH-HHHHhCCCeEEEEEEEEeEecCCCCCCCCc
Q 012987 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~-~~a~~~gi~vI~GiEis~~~~~~~~~~g~~ 150 (452)
||++||||||++|||.++|.+++++|++.|++++|||||||+.|+.++. .+....|+.+|||+|+++.|. +..
T Consensus 1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~~------~~~ 74 (258)
T COG0613 1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTWG------GHI 74 (258)
T ss_pred CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEEEECCcccccccHHHHHHhhcCCCceeeccEEeecccC------CeE
Confidence 6899999999999999999999999999999999999999999999987 555567999999999999986 788
Q ss_pred EEEEEEecCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccccH
Q 012987 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL 230 (452)
Q Consensus 151 vHILgy~~d~~~~~~~~L~~~L~~ir~~R~~R~~~~v~~L~~~Gi~i~~e~v~~~a~~~~~~gr~hia~aLv~~G~v~~~ 230 (452)
+|+++++++. ....+.+++.+.+..|.+|.+++.+++...+++..++.+...++.+ .+.|+|++..+++.+++.+.
T Consensus 75 ih~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~ 150 (258)
T COG0613 75 IHILGLGIDI---TDEPLVEGLARQQLYREERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTR 150 (258)
T ss_pred EEEEeecccc---cchhhhhhhhhccccHHHHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccch
Confidence 9999999863 2355888899999999999999999999999999999988877654 46799999999999999999
Q ss_pred HHHHHHHhhcCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCc-HHHHHHHHHcCCcEEEEeCCCCChhhhhhhh
Q 012987 231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLE 309 (452)
Q Consensus 231 ~~af~~yL~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~~~~-~~li~~l~~~GldGIEV~~~~~~~~~~~~l~ 309 (452)
.+.|++|+..++++|++..+.+.++.|..++.+||++|+|||.++..+ ..++..+.+.|.||||+++...++.+..
T Consensus 151 ~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~--- 227 (258)
T COG0613 151 QGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPRE--- 227 (258)
T ss_pred HHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHH---
Confidence 999999999999999999999999999999999999999999988764 6788899999999999999999887654
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCC
Q 012987 310 KIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGG 347 (452)
Q Consensus 310 ~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~ 347 (452)
.+..+++..+++.|+|||||.++.
T Consensus 228 --------------~~~~~~k~~~~l~s~gs~fh~~~~ 251 (258)
T COG0613 228 --------------VLALLAKEFGLLASVGSDFHTPGD 251 (258)
T ss_pred --------------HHHHHHHHhhhhhcccccccCCCc
Confidence 678999999999999999999864
No 2
>PRK09248 putative hydrolase; Validated
Probab=99.79 E-value=1.7e-18 Score=169.02 Aligned_cols=181 Identities=21% Similarity=0.275 Sum_probs=117.8
Q ss_pred ceEEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC-CCCH------HHHHHHH-HhCCCeEEEEEEEEeEecC
Q 012987 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT-MSGI------PEAIETA-RRFGMKIIPGVEISTIFCQ 142 (452)
Q Consensus 72 ~~~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt-~~g~------~~~~~~a-~~~gi~vI~GiEis~~~~~ 142 (452)
.|++|+|+||.+| ||..++++++++|.+.|++.++||||.. ..+. ....+.. +..+|+++.|+|+......
T Consensus 2 ~~~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~i~il~GiE~~~~~~~ 81 (246)
T PRK09248 2 KYPVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAITDHGPDMPGAPHYWHFGNLRVLPRKVDGVGILRGIEANIKNYD 81 (246)
T ss_pred ccceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCcCCCCCHHHHHHHHHHHHhhcCCeEEEEEEeccccCC
Confidence 3689999999999 8999999999999999999999999985 3321 1111111 2358999999999764310
Q ss_pred CCC----CCCCcEEEEEEecCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHH
Q 012987 143 RGS----ESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVA 218 (452)
Q Consensus 143 ~~~----~~g~~vHILgy~~d~~~~~~~~L~~~L~~ir~~R~~R~~~~v~~L~~~Gi~i~~e~v~~~a~~~~~~gr~hia 218 (452)
... .....++++..++ |..
T Consensus 82 ~~~~~~~~~~~~~D~vi~sv---------------------------------------------------------H~~ 104 (246)
T PRK09248 82 GEIDLPGDMLKKLDIVIAGF---------------------------------------------------------HEP 104 (246)
T ss_pred CcccCCHhHhhhCCEEEEec---------------------------------------------------------ccC
Confidence 000 0000011111111 100
Q ss_pred HHHHHcCccccHHHHHHHHhhcCCCccccCC-CCCHHHHHHHHHHcCCEEEEeCCCCCCC---cHHHHHHHHHcCCcEEE
Q 012987 219 RAMVEAGHVENLKQAFARYLYDGGPAYSTGS-EPLAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLE 294 (452)
Q Consensus 219 ~aLv~~G~v~~~~~af~~yL~~g~p~yv~~~-~~~~eeaI~~I~~aGGvaVLAHP~~~~~---~~~li~~l~~~GldGIE 294 (452)
. |.+.. ....++++++| +.|++.|||||+++.. ...++..+++.|+ +||
T Consensus 105 ------~-------------------~~~~~~~~~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lE 157 (246)
T PRK09248 105 ------V-------------------FAPGDKETNTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALE 157 (246)
T ss_pred ------c-------------------cCCcCHHHHHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEE
Confidence 0 00000 01246788888 8999999999987542 3456778888888 999
Q ss_pred EeCCCCCh---hhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCCCCCccCCC
Q 012987 295 VYRSDGKL---VDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGS 355 (452)
Q Consensus 295 V~~~~~~~---~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~ 355 (452)
+.++.... .... ....+.+++.++|+..|.|||+|.+. .+|.
T Consensus 158 vN~~~l~~~~~g~~~--------------~~~~~~~~~~~~g~~~~~gSDAH~~~-----~vg~ 202 (246)
T PRK09248 158 INNSSFGHSRKGSED--------------NCRAIAALCKKAGVWVALGSDAHIAF-----DIGN 202 (246)
T ss_pred EECCCCccCCCCCcC--------------hHHHHHHHHHHcCCeEEEeCCCCChh-----hhcc
Confidence 98764310 0000 01267889999999999999999973 5774
No 3
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=99.78 E-value=8.8e-20 Score=212.70 Aligned_cols=209 Identities=25% Similarity=0.344 Sum_probs=152.1
Q ss_pred CceEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCCCCC
Q 012987 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESE 148 (452)
Q Consensus 71 ~~~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~g 148 (452)
...++|||+||++| ||.++|++++++|+++|+++||||||+++.+++++++++++.||++|+|+|+++.++
T Consensus 331 ~~KrvdLH~HT~~S~~Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE~~~~~~------- 403 (1437)
T PRK00448 331 EEKRVELHLHTKMSTMDAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVEANLVDD------- 403 (1437)
T ss_pred ccceEEecccccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeeeEEEecc-------
Confidence 56689999999999 999999999999999999999999999999999999999999999999999999753
Q ss_pred CcEEEEEEecCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccc
Q 012987 149 EPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 228 (452)
Q Consensus 149 ~~vHILgy~~d~~~~~~~~L~~~L~~ir~~R~~R~~~~v~~L~~~Gi~i~~e~v~~~a~~~~~~gr~hia~aLv~~G~v~ 228 (452)
.+|+ +|+.+. ..|. +.+.++-.++..|++..++++.+++ .++++.|.+.
T Consensus 404 -~~~i-v~~~~~-----~~L~------------~~~~VVfDLETTGL~~~~deIIEIg------------AV~V~~G~ii 452 (1437)
T PRK00448 404 -GVPI-VYNEVD-----RDLK------------DATYVVFDVETTGLSAVYDEIIEIG------------AVKIKNGEII 452 (1437)
T ss_pred -ceeE-EecCCc-----hhhc------------cCcEEEEEhhhcCCCCchhhhheee------------eEEEeCCeEe
Confidence 3455 587641 2222 1224555567778887777776553 1233445442
Q ss_pred cHHHHHHHHhhcCCCc-------------cccCCCCCHHHHHHHHHH-cCCEEEEeCCCCCCCc--HHHHH-----HHHH
Q 012987 229 NLKQAFARYLYDGGPA-------------YSTGSEPLAEVAVQLIHR-TGGLAVLAHPWALKNP--AAIIR-----KLKD 287 (452)
Q Consensus 229 ~~~~af~~yL~~g~p~-------------yv~~~~~~~eeaI~~I~~-aGGvaVLAHP~~~~~~--~~li~-----~l~~ 287 (452)
+.|+.|+.++.+. ++. ..++++|+++.+++ +||.+++|||..++.. ...+. .+..
T Consensus 453 ---e~F~~~V~P~~~I~~~~~~LTGIT~e~L~-~aps~~EaL~~f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~ 528 (1437)
T PRK00448 453 ---DKFEFFIKPGHPLSAFTTELTGITDDMVK-DAPSIEEVLPKFKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKN 528 (1437)
T ss_pred ---eeEEEEECCCCCCCHHHHHHhCCCHHHHc-CCCCHHHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccc
Confidence 4566677665532 222 56899999999999 7999999999865432 11111 1233
Q ss_pred cCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 288 VGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 288 ~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
.++|++|+++..++.... ..+..+|+.+|+..++
T Consensus 529 ~~IDTLelar~l~p~~k~-----------------~kL~~LAk~lGL~~~~ 562 (1437)
T PRK00448 529 PVIDTLELSRFLYPELKS-----------------HRLNTLAKKFGVELEH 562 (1437)
T ss_pred cceeHHHHHHHHcCcccc-----------------ccHHHHHHHcCCCCCC
Confidence 567888887665432221 2688899999998754
No 4
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=99.70 E-value=1.7e-16 Score=163.55 Aligned_cols=178 Identities=19% Similarity=0.242 Sum_probs=121.7
Q ss_pred EceeeeCCCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH----HhCCCe------EEEEEEEEeEec
Q 012987 75 FELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA----RRFGMK------IIPGVEISTIFC 141 (452)
Q Consensus 75 vDLH~HT~~S---DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a----~~~gi~------vI~GiEis~~~~ 141 (452)
+|||+||.+| +..++|+.|+.+|..+|++.||+|||++... .+.... ...|+. +++|+|+.+
T Consensus 2 aDLHIHs~~S~a~~~~m~~~~i~~~a~~KGldvIg~~D~~~p~~--~~~~~~~~~~~~~Gl~~~~ei~~~~~~ei~~--- 76 (374)
T TIGR00375 2 ADLHIHIGRTRGAKTLTLDRILVEQSRLKGLELLGIIDCHSPLE--EGISSGKRELDGGGIRYRSELSIYDEACVDE--- 76 (374)
T ss_pred CccceecCcCCCCCccCCHHHHHHHHHhcCCEEEEEecCCCchH--HHHhhcccccCCCCeeeccceeecccccccc---
Confidence 6999999999 7789999999999999999999999999852 222222 345776 888888865
Q ss_pred CCCCCCCCcEEEEEEecCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHH
Q 012987 142 QRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAM 221 (452)
Q Consensus 142 ~~~~~~g~~vHILgy~~d~~~~~~~~L~~~L~~ir~~R~~R~~~~v~~L~~~Gi~i~~e~v~~~a~~~~~~gr~hia~aL 221 (452)
.+++|+|+|+.+. +...+|-+.+. .+|. ..+||
T Consensus 77 ------~~~VH~L~~fp~l-----~~a~~f~~~l~-----------~~l~-------------------~~~rp------ 109 (374)
T TIGR00375 77 ------SGPIHVLLFMPTL-----ADMKQFSNWLS-----------ARLK-------------------NIGRS------ 109 (374)
T ss_pred ------CCCceEEEECCCH-----HHHHHHHHHHH-----------hhCC-------------------CCCCC------
Confidence 3579999999752 33322211111 0000 12222
Q ss_pred HHcCccccHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHH------HHcCCcEEEE
Q 012987 222 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL------KDVGLHGLEV 295 (452)
Q Consensus 222 v~~G~v~~~~~af~~yL~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l------~~~GldGIEV 295 (452)
. ....+..++++.++..||++|.||+|+.... ++..+ -...-++||+
T Consensus 110 ----------------------~---q~~~~~~~~~~~v~~~gGi~iPAHiftP~~S--l~g~~~~~~~~~g~~p~avEl 162 (374)
T TIGR00375 110 ----------------------S---QRIYETGLNLEKVQDYGGLFGPAHIFTPWTS--LYKSGDSSSDCYVFDPDFVEL 162 (374)
T ss_pred ----------------------C---eeeecHHHHHHHhhcCCeEEEeCCCCCCccc--ccccccchhhhhcCCCceEEE
Confidence 0 0114778899999999999999999974321 11110 1111299999
Q ss_pred eCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCCCCCccCCC
Q 012987 296 YRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGS 355 (452)
Q Consensus 296 ~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~ 355 (452)
..+..+. +...++...++..+++||+|.+. +..+|+
T Consensus 163 glS~d~~---------------------ma~~~s~L~~~~~ISnSDAHsl~---p~~IGr 198 (374)
T TIGR00375 163 GLSADTD---------------------MADHISELNDYPFLTNSDAHSLG---PHRLGR 198 (374)
T ss_pred eccCCHH---------------------HHHHhHHhcCCCeEeecCCCCCC---hhHhCC
Confidence 9986532 34588889999999999999974 236776
No 5
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=99.68 E-value=9.6e-16 Score=139.26 Aligned_cols=78 Identities=36% Similarity=0.666 Sum_probs=68.2
Q ss_pred EceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCCCCCCcEE
Q 012987 75 FELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVH 152 (452)
Q Consensus 75 vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~g~~vH 152 (452)
||||+||.|| ||..+|++++++|++.|++.||||||+++.++..+.+.+++.||.+++|+|+..... ....|
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~~~~~~------~~~~~ 74 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEIESFER------NDPFD 74 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEESHHHH------TTTEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEeeccccc------cchhH
Confidence 7999999999 999999999999999999999999999999999999999999999999999953322 45678
Q ss_pred EEEEec
Q 012987 153 ILAYYS 158 (452)
Q Consensus 153 ILgy~~ 158 (452)
++.+..
T Consensus 75 ~~i~~~ 80 (175)
T PF02811_consen 75 YIIGSV 80 (175)
T ss_dssp EEEEEG
T ss_pred HHHHHh
Confidence 877765
No 6
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=99.67 E-value=2.3e-16 Score=124.20 Aligned_cols=64 Identities=44% Similarity=0.704 Sum_probs=61.9
Q ss_pred ceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeE
Q 012987 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 139 (452)
Q Consensus 76 DLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~ 139 (452)
|||+||.|| ||..+|++++++|+++|+++++||||+++.|+.++++.+++.||++|||+|+++.
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~~~~ 66 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEANIV 66 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEEEec
Confidence 799999999 9999999999999999999999999999999999999999999999999999863
No 7
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=99.62 E-value=1.1e-14 Score=167.03 Aligned_cols=118 Identities=33% Similarity=0.463 Sum_probs=96.0
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCCCCCCc
Q 012987 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (452)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~g~~ 150 (452)
.++|||+||.|| ||.++|++++++|++.|++++||||||++.|+.+++++|++.||++|+|+|+++.+.. .+..
T Consensus 4 ~fv~LHvHT~ySlLdg~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~----~~~~ 79 (1046)
T PRK05672 4 PYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLVIGAELSLGPDP----DPGG 79 (1046)
T ss_pred ceeeccccccCcccccCCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHCCCEEEEEEEEEEecCC----CCCC
Confidence 479999999999 9999999999999999999999999999999999999999999999999999996521 1346
Q ss_pred EEEEEEecCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 012987 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAG 207 (452)
Q Consensus 151 vHILgy~~d~~~~~~~~L~~~L~~ir~~R~~R~~~~v~~L~~~Gi~i~~e~v~~~a~ 207 (452)
+|+++|+.+ +.++..|.++.+..+..+ . ..+..++++.+.++..
T Consensus 80 ~hllllAkn--~~Gy~nL~kL~S~a~~~~---~--------~~~p~i~~e~L~~~~~ 123 (1046)
T PRK05672 80 PHLLVLARD--REGYGRLSRLITRARLRA---G--------KGEYRLDLDDLAEPAG 123 (1046)
T ss_pred ceEEEEEcC--hHHHHHHHHHHHHHHHhC---C--------CCCccccHHHHHhhcC
Confidence 899999975 446666666655444211 1 3456788888877643
No 8
>PRK08392 hypothetical protein; Provisional
Probab=99.60 E-value=1.9e-14 Score=138.18 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=53.9
Q ss_pred EceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC---CH----HHHHHHHHhCCCeEEEEEEEEeE
Q 012987 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS---GI----PEAIETARRFGMKIIPGVEISTI 139 (452)
Q Consensus 75 vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~---g~----~~~~~~a~~~gi~vI~GiEis~~ 139 (452)
+|+|+||.+|||..+|++++++|.+.|++.+|||||.... .+ .++.++.++.+|.+++|+|+...
T Consensus 1 ~D~H~HT~~sd~~~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~ 72 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANIT 72 (215)
T ss_pred CccccCCCCcCCcCCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeec
Confidence 5999999999999999999999999999999999998653 12 22333434568999999999864
No 9
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=99.58 E-value=5.1e-14 Score=159.15 Aligned_cols=99 Identities=30% Similarity=0.396 Sum_probs=81.8
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCC-CCCC
Q 012987 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS-ESEE 149 (452)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~-~~g~ 149 (452)
.++|||+||.|| ||..+|++++++|++.|+++|||||||++.|..+++++|++.||++|+|+|+++..+..+. ....
T Consensus 2 ~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~ 81 (874)
T PRK09532 2 SFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRR 81 (874)
T ss_pred CccccccCCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccc
Confidence 489999999999 9999999999999999999999999999999999999999999999999999986532110 0122
Q ss_pred cEEEEEEecCCCCCchHHHHHHHH
Q 012987 150 PVHILAYYSSCGPSKYEELENFLA 173 (452)
Q Consensus 150 ~vHILgy~~d~~~~~~~~L~~~L~ 173 (452)
..|++.|..+ ..+|..|.++.+
T Consensus 82 ~~~lvLLAkN--~~GY~NL~kL~S 103 (874)
T PRK09532 82 KYHQVVLAKN--TQGYKNLVKLTT 103 (874)
T ss_pred cceeEEEecC--HHHHHHHHHHHh
Confidence 4688888764 456777766544
No 10
>PRK07328 histidinol-phosphatase; Provisional
Probab=99.51 E-value=3e-13 Score=133.90 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=53.7
Q ss_pred ceEEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------C-------HHHH----HHHHHh-CCCe
Q 012987 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------G-------IPEA----IETARR-FGMK 129 (452)
Q Consensus 72 ~~~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt~~---------g-------~~~~----~~~a~~-~gi~ 129 (452)
+|++|+|+||.|| ||..++++++++|.++|++.+|||||.... . +.+. .++.++ .+|.
T Consensus 1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~ 80 (269)
T PRK07328 1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLY 80 (269)
T ss_pred CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCe
Confidence 4679999999999 999999999999999999999999997651 0 1111 122223 3799
Q ss_pred EEEEEEEEeE
Q 012987 130 IIPGVEISTI 139 (452)
Q Consensus 130 vI~GiEis~~ 139 (452)
++.|+|+...
T Consensus 81 Il~GiE~~~~ 90 (269)
T PRK07328 81 VRLGIEADYH 90 (269)
T ss_pred EEEEEEeccc
Confidence 9999999864
No 11
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=99.49 E-value=6.6e-14 Score=158.81 Aligned_cols=90 Identities=26% Similarity=0.399 Sum_probs=80.9
Q ss_pred EEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCCCCCCcE
Q 012987 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPV 151 (452)
Q Consensus 74 ~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~g~~v 151 (452)
++|||+||.|| ||.++|+++++.|++.|+++|||||||++.|+.+++++|++.||++|+|+|+++.+ ..+
T Consensus 3 fv~LHvHS~ySlLDg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~gIkpIiG~Ei~~~~--------~~l 74 (973)
T PRK07135 3 LINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGLDLEVEN--------FRF 74 (973)
T ss_pred ccccccCccCcccccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHcCCeEEEeEEEEecC--------cEE
Confidence 78999999999 99999999999999999999999999999999999999999999999999998753 367
Q ss_pred EEEEEecCCCCCchHHHHHHHHHH
Q 012987 152 HILAYYSSCGPSKYEELENFLANI 175 (452)
Q Consensus 152 HILgy~~d~~~~~~~~L~~~L~~i 175 (452)
|+|+.+ ..+|..|.++.+..
T Consensus 75 ~LLAkn----~~GY~nL~kL~S~~ 94 (973)
T PRK07135 75 ILLAKN----YSGYKLLNELSSKK 94 (973)
T ss_pred EEEECC----HHHHHHHHHHHHHH
Confidence 777775 34788888887654
No 12
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.47 E-value=9.8e-13 Score=152.16 Aligned_cols=99 Identities=28% Similarity=0.356 Sum_probs=82.4
Q ss_pred EEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCC-C-CCCCC
Q 012987 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G-SESEE 149 (452)
Q Consensus 74 ~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~-~-~~~g~ 149 (452)
+++||+||.|| ||..+|++++++|++.|++++|||||+++.|+.+++++|++.||++|+|+|+++.++.+ + ...+.
T Consensus 2 fv~LHvHS~ySlLdg~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~~ 81 (1135)
T PRK05673 2 FVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKPIIGCEAYVAPEKKDDVSGGGA 81 (1135)
T ss_pred cccceecccCchhhhcCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHcCCeEEEEEEEEecCCcccccccccC
Confidence 68999999999 99999999999999999999999999999999999999999999999999999976421 1 00122
Q ss_pred cEEEEEEecCCCCCchHHHHHHHHH
Q 012987 150 PVHILAYYSSCGPSKYEELENFLAN 174 (452)
Q Consensus 150 ~vHILgy~~d~~~~~~~~L~~~L~~ 174 (452)
..|++.|..+ ..+|..|.++.+.
T Consensus 82 ~~~l~llAkn--~~Gy~nL~kL~S~ 104 (1135)
T PRK05673 82 YTHLTLLAKN--ETGYRNLFKLSSR 104 (1135)
T ss_pred CCceEEEecC--HHHHHHHHHHHHH
Confidence 3588888764 4567777766543
No 13
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=4.4e-12 Score=145.79 Aligned_cols=100 Identities=30% Similarity=0.400 Sum_probs=82.5
Q ss_pred EEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCC-----C
Q 012987 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS-----E 146 (452)
Q Consensus 74 ~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~-----~ 146 (452)
+++||+||.|| ||..+|++++++|++.|++++|||||+++.|+.+++++|++.||++|+|+|+++..+.... .
T Consensus 1 fv~LHvHS~yS~Ldg~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~~~~~~~~~~ 80 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKAGIKPIIGCEAYVAPGSRFDKKRISK 80 (1022)
T ss_pred CeeeeecccCccccccCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHcCCeEEEEEEEEeeCCCccccccccc
Confidence 47999999999 9999999999999999999999999999999999999999999999999999987532100 0
Q ss_pred CCCcEEEEEEecCCCCCchHHHHHHHHHH
Q 012987 147 SEEPVHILAYYSSCGPSKYEELENFLANI 175 (452)
Q Consensus 147 ~g~~vHILgy~~d~~~~~~~~L~~~L~~i 175 (452)
.+...|++.|..+ ..+|..|.++.+..
T Consensus 81 ~~~~~~l~llAkn--~~Gy~nL~kL~S~a 107 (1022)
T TIGR00594 81 GKEAYHLILLAKN--NTGYRNLMKLSSLA 107 (1022)
T ss_pred cCCCccEEEEeCC--HHHHHHHHHHHHHH
Confidence 1223588888764 55777777765543
No 14
>PRK06361 hypothetical protein; Provisional
Probab=99.43 E-value=4e-12 Score=121.26 Aligned_cols=60 Identities=42% Similarity=0.704 Sum_probs=50.0
Q ss_pred eeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH--------HHHHhCCCeEEEEEEEEe
Q 012987 79 SHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI--------ETARRFGMKIIPGVEIST 138 (452)
Q Consensus 79 ~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~--------~~a~~~gi~vI~GiEis~ 138 (452)
+||.||||..+|+++++.|.+.|++.||||||++..+...+. ++.+..+|.+++|+|++.
T Consensus 1 ~Ht~~sdg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~ 68 (212)
T PRK06361 1 THTIFSDGELIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTH 68 (212)
T ss_pred CCccccCCCCCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcc
Confidence 699999999999999999999999999999999876543222 122345899999999985
No 15
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=99.42 E-value=2.4e-12 Score=125.30 Aligned_cols=64 Identities=28% Similarity=0.439 Sum_probs=51.0
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCH-HHHHHHHHhCCCeEEEEEEEEe
Q 012987 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGI-PEAIETARRFGMKIIPGVEIST 138 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~-~~~~~~a~~~gi~vI~GiEis~ 138 (452)
+|++|+|+||. +||..+++++++.|.+.|++.||||||...... ....+ .-.+|.++.|+|+..
T Consensus 1 ~m~~DlHvHt~-~d~~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~--~~~~i~Il~GiEi~~ 65 (237)
T PRK00912 1 MKFYDLNVHAV-PDGYDTVLRLISEASHLGYSGIALSNHSDKYPESKPELE--DLLGFEIFRGVEIVA 65 (237)
T ss_pred CCceEeccCCC-CCCcchHHHHHHHHHHCCCCEEEEecCcccccchhHHHH--HhcCCcEEeeEEEec
Confidence 46789999994 799999999999999999999999999876422 11111 112899999999964
No 16
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.41 E-value=6.7e-12 Score=145.22 Aligned_cols=101 Identities=28% Similarity=0.440 Sum_probs=83.2
Q ss_pred ceEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCC-C--
Q 012987 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS-E-- 146 (452)
Q Consensus 72 ~~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~-~-- 146 (452)
+.++|||+||.|| ||..+|++++++|++.|+++||||||+++.|+.++++.|++.||++|+|+|+.+....+.. .
T Consensus 3 m~fvdLHvHT~yS~ldg~~~~~elv~~A~e~G~~avAITDH~~~~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~ 82 (1151)
T PRK06826 3 MSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQGIKPIIGCEVYVAPRSRFDKEPD 82 (1151)
T ss_pred CcceeccccccCChhhhcCCHHHHHHHHHHCCCCEEEEecCCchHhHHHHHHHHHhCCCEEEEEEEEEecCCcccccccc
Confidence 4589999999999 9999999999999999999999999999999999999999999999999999986432100 0
Q ss_pred -CCCcEEEEEEecCCCCCchHHHHHHHHH
Q 012987 147 -SEEPVHILAYYSSCGPSKYEELENFLAN 174 (452)
Q Consensus 147 -~g~~vHILgy~~d~~~~~~~~L~~~L~~ 174 (452)
.....|++.|..+ ..+|..|.++.+.
T Consensus 83 ~~~~~~~l~lLAkn--~~Gy~nL~kL~S~ 109 (1151)
T PRK06826 83 IDNETYHLVLLAKN--ETGYKNLMKIVSK 109 (1151)
T ss_pred ccCCCceEEEEEcC--cHHHHHHHHHHHH
Confidence 0123588888864 5677777766553
No 17
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=99.41 E-value=4.7e-12 Score=124.43 Aligned_cols=65 Identities=28% Similarity=0.464 Sum_probs=51.4
Q ss_pred EceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC-----C----------HH----HHHHHHHhC--CCeEEE
Q 012987 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS-----G----------IP----EAIETARRF--GMKIIP 132 (452)
Q Consensus 75 vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt~~-----g----------~~----~~~~~a~~~--gi~vI~ 132 (452)
.|+|+||.+| ||..++++++++|+++|++.+|||||..+. . ++ ++.++.+++ +|.|+.
T Consensus 1 ~D~H~Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~ 80 (253)
T TIGR01856 1 RDGHSHSPFCAHGTDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILI 80 (253)
T ss_pred CCcccCcCCCCCCCCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4899999999 999999999999999999999999997631 0 11 122233333 799999
Q ss_pred EEEEEeE
Q 012987 133 GVEISTI 139 (452)
Q Consensus 133 GiEis~~ 139 (452)
|+|+...
T Consensus 81 GiE~~~~ 87 (253)
T TIGR01856 81 GLEVDYI 87 (253)
T ss_pred EEEeccc
Confidence 9999864
No 18
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.39 E-value=1.6e-12 Score=148.38 Aligned_cols=95 Identities=24% Similarity=0.366 Sum_probs=83.9
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCCCCCCc
Q 012987 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (452)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~g~~ 150 (452)
|++.||+||.|| ||..+|++++++|++.|++++|||||+++.|..+|+++|++.||++|.|+|+..... +..
T Consensus 1 mfvhLh~hS~YSlldg~~~i~~lv~~A~~~g~~alAlTD~~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~------~~~ 74 (1034)
T PRK07279 1 MFAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKNGLQPILGLELNIFVE------EQE 74 (1034)
T ss_pred CeeeeecCCCCccccccCCHHHHHHHHHHCCCCEEEEEcCCccccHHHHHHHHHHcCCcEEEEEEEEEecC------CCc
Confidence 689999999999 999999999999999999999999999999999999999999999999999998643 234
Q ss_pred EEEEEEecCCCCCchHHHHHHHHHH
Q 012987 151 VHILAYYSSCGPSKYEELENFLANI 175 (452)
Q Consensus 151 vHILgy~~d~~~~~~~~L~~~L~~i 175 (452)
.|++.|..+ ..+|..|.++.+..
T Consensus 75 ~~lvlLAkN--~~GY~nL~kL~s~~ 97 (1034)
T PRK07279 75 VTLRLIAKN--TQGYKNLLKISTAK 97 (1034)
T ss_pred ceEEEEECC--HHHHHHHHHHHHHh
Confidence 699888864 55788888776643
No 19
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.38 E-value=5.5e-12 Score=145.18 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=81.8
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCCCCCCc
Q 012987 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (452)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~g~~ 150 (452)
.++.||+||.|| ||..+|++++++|++.|++++|||||+++.|..+|+++|++.||++|.|+|+.+..... ...
T Consensus 2 ~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~~----~~~ 77 (1107)
T PRK06920 2 KFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIGLTASIFSEEE----EKS 77 (1107)
T ss_pred CceeeecCcccchhccCCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHcCCCEeeeeEEEEecCCC----CCc
Confidence 378999999999 99999999999999999999999999999999999999999999999999999853210 123
Q ss_pred EEEEEEecCCCCCchHHHHHHHHH
Q 012987 151 VHILAYYSSCGPSKYEELENFLAN 174 (452)
Q Consensus 151 vHILgy~~d~~~~~~~~L~~~L~~ 174 (452)
.|++.|..+ ..+|..|.++.+.
T Consensus 78 ~~l~LLAkn--~~Gy~nL~kL~S~ 99 (1107)
T PRK06920 78 YPLVLLAEN--EIGYQNLLKISSS 99 (1107)
T ss_pred ccEEEEeCC--HHHHHHHHHHHHH
Confidence 588888764 4577777776553
No 20
>PRK07945 hypothetical protein; Provisional
Probab=99.38 E-value=2.7e-12 Score=131.41 Aligned_cols=70 Identities=27% Similarity=0.404 Sum_probs=55.4
Q ss_pred CCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC----C--HHH-------HHHHHHh-CCCeEEEEEE
Q 012987 70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS----G--IPE-------AIETARR-FGMKIIPGVE 135 (452)
Q Consensus 70 ~~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~----g--~~~-------~~~~a~~-~gi~vI~GiE 135 (452)
..++.+|+|+||.||||..++++++++|.++|++.||||||.... + ... ..++.++ .+|.++.|+|
T Consensus 93 ~~~~~~D~H~HT~~Sdg~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE 172 (335)
T PRK07945 93 RAALRGDLHTHSDWSDGGSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIE 172 (335)
T ss_pred HHHHhhhcccccCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeE
Confidence 347899999999999999999999999999999999999997542 1 111 1122223 3699999999
Q ss_pred EEeE
Q 012987 136 ISTI 139 (452)
Q Consensus 136 is~~ 139 (452)
+...
T Consensus 173 ~d~~ 176 (335)
T PRK07945 173 VDIL 176 (335)
T ss_pred eccc
Confidence 9875
No 21
>PRK08123 histidinol-phosphatase; Reviewed
Probab=99.36 E-value=2.5e-11 Score=120.45 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=52.2
Q ss_pred ceEEceeeeCCCC-CCC-CCHHHHHHHHHHcCCcEEEEecCCCCCC-----------------HH----HHHHHHHhC--
Q 012987 72 NVVFELHSHSNFS-DGY-LSPSKLVERAHCNGVKVLALTDHDTMSG-----------------IP----EAIETARRF-- 126 (452)
Q Consensus 72 ~~~vDLH~HT~~S-DG~-~sp~elv~~A~~~Gl~~iaITDHdt~~g-----------------~~----~~~~~a~~~-- 126 (452)
+|++|+|+||.+| ||. -++++++++|.++|++.+|||||..... +. ++.++.+++
T Consensus 1 ~m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~tdH~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~ky~~ 80 (270)
T PRK08123 1 MMKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFTEHAPLPPGFIDPTPRQDSAMAIEQLERYLKELNELKKKYAG 80 (270)
T ss_pred CCccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCCccccCCcccCcccccCHHHHHHHHHHHHHHHHHccC
Confidence 3578999999999 775 6899999999999999999999966421 11 122222332
Q ss_pred CCeEEEEEEEEeE
Q 012987 127 GMKIIPGVEISTI 139 (452)
Q Consensus 127 gi~vI~GiEis~~ 139 (452)
+|.++.|+|+...
T Consensus 81 ~i~i~~GiE~~~~ 93 (270)
T PRK08123 81 QIDIRIGLEVDYI 93 (270)
T ss_pred CCeEEEEEEeecc
Confidence 6999999999864
No 22
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=99.35 E-value=2.9e-12 Score=144.88 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=84.2
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCCCCCCc
Q 012987 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (452)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~g~~ 150 (452)
|++.||+||.|| ||..+|++++++|++.|++++|||||+++.|..+|+++|++.||++|.|+|+.+.. ..
T Consensus 1 mfvhLh~hS~YSlLdg~~~~~~lv~~A~e~g~~alALTD~~nl~GaveF~~~ak~~gIkPIiG~e~~v~~--------~~ 72 (971)
T PRK05898 1 MFINLNTHSHYSLLSSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAHNLIPIIGLEIEYQS--------TN 72 (971)
T ss_pred CeeeeecCCccccccccCCHHHHHHHHHHCCCCEEEEEeCCccccHHHHHHHHHHcCCCEEEEEEEEEcC--------CC
Confidence 689999999999 99999999999999999999999999999999999999999999999999999852 24
Q ss_pred EEEEEEecCCCCCchHHHHHHHHHHH
Q 012987 151 VHILAYYSSCGPSKYEELENFLANIR 176 (452)
Q Consensus 151 vHILgy~~d~~~~~~~~L~~~L~~ir 176 (452)
.|++.|..+ ..+|..|.++.+...
T Consensus 73 ~~lvLLAkn--~~GY~nL~kLsS~~~ 96 (971)
T PRK05898 73 ATLVLYAKN--YNGYLNLIKISSFIM 96 (971)
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHHH
Confidence 688888764 568888888876554
No 23
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=99.33 E-value=2.6e-11 Score=118.48 Aligned_cols=68 Identities=32% Similarity=0.537 Sum_probs=55.9
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC---CCH----H----HHHHHHHhCCCeEEEEEEEEeEe
Q 012987 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTM---SGI----P----EAIETARRFGMKIIPGVEISTIF 140 (452)
Q Consensus 73 ~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~---~g~----~----~~~~~a~~~gi~vI~GiEis~~~ 140 (452)
+++|+|+||.||||..+|++++++|.+.|+..+|||||-.. ... . ++..+.+.++|.++.|+|++...
T Consensus 1 ~~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~ 79 (237)
T COG1387 1 MKIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILP 79 (237)
T ss_pred CCcccccCcccccCCCCHHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecC
Confidence 46899999999999999999999999999999999999776 221 1 22333445679999999999864
No 24
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.33 E-value=4.5e-12 Score=146.73 Aligned_cols=101 Identities=31% Similarity=0.427 Sum_probs=84.0
Q ss_pred eEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCC---CC
Q 012987 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS---ES 147 (452)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~---~~ 147 (452)
.+++||+||.|| ||..+|++++++|++.|++++|||||+++.|+.+++++|++.||++|+|+|+++..+.... ..
T Consensus 2 ~fv~LHvHS~ySlLdg~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~gIkpIiG~E~~v~~~~~~~~~~~~ 81 (1170)
T PRK07374 2 AFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGKGIKPIIGNEMYVINGSIDDPQPKK 81 (1170)
T ss_pred CcccccccCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHcCCeEEEEeEEEecCcccccccccc
Confidence 378999999999 9999999999999999999999999999999999999999999999999999986431100 01
Q ss_pred CCcEEEEEEecCCCCCchHHHHHHHHHH
Q 012987 148 EEPVHILAYYSSCGPSKYEELENFLANI 175 (452)
Q Consensus 148 g~~vHILgy~~d~~~~~~~~L~~~L~~i 175 (452)
....|++.+..+ ..+|..|.++.+..
T Consensus 82 ~~~~~l~LLAkN--~~Gy~nL~kL~S~a 107 (1170)
T PRK07374 82 EKRYHLVVLAKN--ATGYKNLVKLTTIS 107 (1170)
T ss_pred cccceEEEEEeC--cHHHHHHHHHHHHH
Confidence 123588888864 56788888876644
No 25
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=99.33 E-value=4.9e-12 Score=145.13 Aligned_cols=102 Identities=29% Similarity=0.362 Sum_probs=87.7
Q ss_pred ceEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCCCCCC
Q 012987 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEE 149 (452)
Q Consensus 72 ~~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~g~ 149 (452)
+.++.|||||.|| ||..+|+++++.|++.|+.+||||||+++.|..+|+.+|++.||++|.|+|++....... ....
T Consensus 2 ~~fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~g~~AlaiTD~~nl~Gav~Fy~~ak~~gikpIiG~e~~v~~~~~~-~~~~ 80 (1139)
T COG0587 2 MSFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALALTDHNNLYGAVEFYKAAKKAGIKPIIGCEAYVANGDGF-RGRE 80 (1139)
T ss_pred CceeecccccccchhccccCHHHHHHHHHHcCCCeEEEecCCcceeHHHHHHHHHHcCCeEEeeeEEEEeccccc-cccC
Confidence 5689999999999 999999999999999999999999999999999999999999999999999888754221 1234
Q ss_pred cEEEEEEecCCCCCchHHHHHHHHHHH
Q 012987 150 PVHILAYYSSCGPSKYEELENFLANIR 176 (452)
Q Consensus 150 ~vHILgy~~d~~~~~~~~L~~~L~~ir 176 (452)
..|++.|..+ +.+|..|..+.+...
T Consensus 81 ~~~l~llAkn--~~GY~nL~~LsS~a~ 105 (1139)
T COG0587 81 RPHLLLLAKN--NEGYKNLVKLSSIAY 105 (1139)
T ss_pred CccEEEEeCC--HHHHHHHHHHHHHHH
Confidence 5899999874 568888888776544
No 26
>PRK08609 hypothetical protein; Provisional
Probab=99.32 E-value=3.5e-11 Score=131.11 Aligned_cols=105 Identities=19% Similarity=0.332 Sum_probs=69.9
Q ss_pred chhhhhhccccc-cceeccCccCCCCCCCCccc-cc-ccccCCCCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEE
Q 012987 30 TAEQSLAFNSVT-EWVYLDQSHSSSSSEDDFGV-HQ-ILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLA 106 (452)
Q Consensus 30 ~~~~~~a~~~~~-~W~~~~~~~~~~~~~~~f~~-~~-~~~~~~~~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~ia 106 (452)
..++..-|.... .|+.|-.+ ...+++.+ .. |.-- ...-+++|+||||.+|||..+++++++.|.+.|++.++
T Consensus 293 ~~~E~~iy~~Lgl~yipPelR----e~~ge~~~a~~lp~lv-~~~d~~~DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~ 367 (570)
T PRK08609 293 FESEEAFFAHFGLPFIPPEVR----EDGSEFERYKDLSNLI-TLSDIQGDLHMHTTWSDGAFSIEEMVEACIAKGYEYMA 367 (570)
T ss_pred CCCHHHHHHHcCCCCCCcccc----CCccHHHHHhhchhhh-hhHhhcCCccccCCCCCCCCCHHHHHHHHHHCCCCEEE
Confidence 334555666544 78877655 22233321 11 1001 13357899999999999999999999999999999999
Q ss_pred EecCCCCC----C--HHH-------HHHHHHhC-CCeEEEEEEEEeE
Q 012987 107 LTDHDTMS----G--IPE-------AIETARRF-GMKIIPGVEISTI 139 (452)
Q Consensus 107 ITDHdt~~----g--~~~-------~~~~a~~~-gi~vI~GiEis~~ 139 (452)
||||.... + ..+ +.++.+++ +|.++.|+|+...
T Consensus 368 iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~ 414 (570)
T PRK08609 368 ITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL 414 (570)
T ss_pred EeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec
Confidence 99997431 1 111 12222233 7999999999875
No 27
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=99.30 E-value=4.6e-12 Score=147.04 Aligned_cols=72 Identities=35% Similarity=0.474 Sum_probs=68.4
Q ss_pred CCceEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEec
Q 012987 70 DNNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFC 141 (452)
Q Consensus 70 ~~~~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~ 141 (452)
...+++|||+||.+| ||.++|++++++|+++|+++||||||+++.+++++++++++.||++|+|+|+++.++
T Consensus 100 ~~~krvDLH~HT~~S~~Dg~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~~~ikvI~GvE~~~~~d 173 (1213)
T TIGR01405 100 AKEKRVELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDGIKIIYGMEANLVDD 173 (1213)
T ss_pred CccceEEeeeCccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHhcCCEEEEEEEEEeecc
Confidence 457899999999999 999999999999999999999999999999999999999999999999999998654
No 28
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=99.27 E-value=3.7e-11 Score=119.82 Aligned_cols=200 Identities=23% Similarity=0.240 Sum_probs=131.5
Q ss_pred ceEEceeeeCCCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHh--C------CCeEEEEEEEEeEe
Q 012987 72 NVVFELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARR--F------GMKIIPGVEISTIF 140 (452)
Q Consensus 72 ~~~vDLH~HT~~S---DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~--~------gi~vI~GiEis~~~ 140 (452)
.+..|||+||.|| ...|..+.+++.|+..|++.|+.-|--.-....+..+.... . ++.+|+-+|+..
T Consensus 2 ~~~aDLHiHs~ys~a~S~~m~~~~Ia~~A~~KGl~lvGtgD~~hP~w~e~ik~~~e~~e~g~~e~~~~~fi~t~evEd-- 79 (403)
T COG1379 2 QVNADLHIHSHYSGATSKLMVLPNIAEYAKLKGLDLVGTGDCLHPEWLEEIKKSIESDEDGTFEVKGVRFILTAEVED-- 79 (403)
T ss_pred ccccceeeeeccccccccccchHHHHhhhhhcccceecccccCChHHHHHHHHHhhhccccccccceeEEEEEEeecc--
Confidence 4678999999999 56799999999999999999999997766666666555443 1 234555555543
Q ss_pred cCCCCCCCCcEEEEEEecCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHH
Q 012987 141 CQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA 220 (452)
Q Consensus 141 ~~~~~~~g~~vHILgy~~d~~~~~~~~L~~~L~~ir~~R~~R~~~~v~~L~~~Gi~i~~e~v~~~a~~~~~~gr~hia~a 220 (452)
...||+|.+.+.. +..++|.+ .|.. +..+-...||||+
T Consensus 80 -------~~rVHhLlilPSl--~~~~El~~------------------~l~~------------~skni~~~grprv--- 117 (403)
T COG1379 80 -------SRRVHHLLILPSL--SAAEELSE------------------WLSK------------YSKNIETEGRPRV--- 117 (403)
T ss_pred -------CCceeEEEEcCcH--HHHHHHHH------------------HHHH------------hhcCccccCCcee---
Confidence 4679999998642 12222222 1211 1222123566654
Q ss_pred HHHcCccccHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCC-----CCcHHHHHHHHHcCCcEEEE
Q 012987 221 MVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWAL-----KNPAAIIRKLKDVGLHGLEV 295 (452)
Q Consensus 221 Lv~~G~v~~~~~af~~yL~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~-----~~~~~li~~l~~~GldGIEV 295 (452)
.++-.+..++++..||+...||-|.. +..+++-+-+-.+-+|+||.
T Consensus 118 -----------------------------~~tg~el~e~v~dlggL~gPaHaFtPwtslYk~~dSl~e~yg~a~iDfvEL 168 (403)
T COG1379 118 -----------------------------YLTGAELAEIVKDLGGLIGPAHAFTPWTSLYKKYDSLKECYGDAMIDFVEL 168 (403)
T ss_pred -----------------------------eccHHHHHHHHHHcccceecccccCccHHhhhhhchHHHHhCccchhHHHh
Confidence 35788999999999999999997643 22233322222223566665
Q ss_pred eCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCCCCCccCCC----ccCChhHHHHHhc
Q 012987 296 YRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGS----VKLPVLVLNDFLK 368 (452)
Q Consensus 296 ~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~----~~~p~~~~~~~~~ 368 (452)
==+- |.+ +...+.+-+.|.....||.|+|. +.+||+ +.+++.+|++|++
T Consensus 169 GLSA----Dtd-----------------mAD~I~el~~~pFLtNSDAHSp~---phrLgREfn~f~v~~~sF~~~r~ 221 (403)
T COG1379 169 GLSA----DTD-----------------MADMIEELHRLPFLTNSDAHSPY---PHRLGREFNQFEVEEISFEELRK 221 (403)
T ss_pred cccc----Cch-----------------HHHHHHHhccCCcccccccCCCc---hhhhhhhhheeecccCCHHHHHH
Confidence 3321 111 45566677889999999999975 346775 5678888888775
No 29
>PRK05588 histidinol-phosphatase; Provisional
Probab=99.25 E-value=4.6e-11 Score=117.35 Aligned_cols=64 Identities=20% Similarity=0.502 Sum_probs=50.4
Q ss_pred EEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------CHHHHHHHHHhC-CCeEEEEEEEEe
Q 012987 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------GIPEAIETARRF-GMKIIPGVEIST 138 (452)
Q Consensus 74 ~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt~~---------g~~~~~~~a~~~-gi~vI~GiEis~ 138 (452)
++|+|+||.+| ||..++++++++|.++|++.+ ||||..+. ..+...+..+++ +++++.|+|+..
T Consensus 1 ~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~ 75 (255)
T PRK05588 1 MFDTHIHTEFSTDSKMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGM 75 (255)
T ss_pred CeeecccCCCCCCcccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEecc
Confidence 47999999999 999999999999999999988 99996432 122333333333 589999999965
No 30
>PRK07329 hypothetical protein; Provisional
Probab=99.03 E-value=1.3e-09 Score=106.81 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=47.1
Q ss_pred EEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCC-----------CCHHHH----HHHHHhCCCeEEEEEEEE
Q 012987 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTM-----------SGIPEA----IETARRFGMKIIPGVEIS 137 (452)
Q Consensus 74 ~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt~-----------~g~~~~----~~~a~~~gi~vI~GiEis 137 (452)
+.|+|+||.|| ||..++++++++|. +.|+||||..+ ..+++. .++.++++.++..|+|+.
T Consensus 1 ~~D~H~Ht~~s~d~~~~~ee~~~~A~----~~i~~TdH~~~~~~~~~~~~~~~~~~~Y~~ei~~lk~ky~~~I~~GlE~~ 76 (246)
T PRK07329 1 IRDQHLHTHFSFDSDAKFEDYLTHFD----GEIVTTEHLDLSNPYDTGQDDVPDYAKYSAEIAELNEKYGNRIKKGIEIG 76 (246)
T ss_pred CcccccCCCCCCCCcchHHHHHHHhc----cCeEEecccCCCCCcccccccccCHHHHHHHHHHHHHHhhhhceEEEEeC
Confidence 36999999999 99999999999995 79999999643 112222 223345567899999997
Q ss_pred eE
Q 012987 138 TI 139 (452)
Q Consensus 138 ~~ 139 (452)
..
T Consensus 77 ~~ 78 (246)
T PRK07329 77 YF 78 (246)
T ss_pred cc
Confidence 53
No 31
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=98.98 E-value=8.1e-10 Score=124.62 Aligned_cols=72 Identities=35% Similarity=0.515 Sum_probs=68.5
Q ss_pred CCceEEceeeeCCCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEec
Q 012987 70 DNNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFC 141 (452)
Q Consensus 70 ~~~~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~ 141 (452)
....+++||.||.+| ||..++++++++|+++|.++||||||+.+..++++++++++.||++|.|+|.....+
T Consensus 332 ~~eKRVELh~HTkMS~mDai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~giK~IyG~EanlvdD 405 (1444)
T COG2176 332 AKEKRVELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLEANLVDD 405 (1444)
T ss_pred CccceEEEEeccchhhhcccCCHHHHHHHHHHcCCceEEEecCcchhhchHHHHhhhhcCceEEEeeeeeeccC
Confidence 446799999999999 999999999999999999999999999999999999999999999999999998654
No 32
>PRK06740 histidinol-phosphatase; Validated
Probab=98.79 E-value=1.6e-07 Score=96.19 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCC
Q 012987 85 DGYLSPSKLVERAHCNGVKVLALTDHD 111 (452)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHd 111 (452)
||.-+++++|++|.++|++.++||||-
T Consensus 58 ~~~~~~e~yv~~Ai~~G~~~ig~SdH~ 84 (331)
T PRK06740 58 YTTKWIDLYLEEALRKGIKEVGIVDHL 84 (331)
T ss_pred CccchHHHHHHHHHHCCCcEEEECCCC
Confidence 788899999999999999999999996
No 33
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=4.5e-05 Score=73.25 Aligned_cols=66 Identities=27% Similarity=0.374 Sum_probs=48.8
Q ss_pred EEceeeeCCCC--CCCCCHHH---HHHHHHHcCCcEEEEecCCCCC---CHHH--------HHHHHH--hCCCeEEEEEE
Q 012987 74 VFELHSHSNFS--DGYLSPSK---LVERAHCNGVKVLALTDHDTMS---GIPE--------AIETAR--RFGMKIIPGVE 135 (452)
Q Consensus 74 ~vDLH~HT~~S--DG~~sp~e---lv~~A~~~Gl~~iaITDHdt~~---g~~~--------~~~~a~--~~gi~vI~GiE 135 (452)
++|.|||-..- ||.-+.++ |++.|.++|+..|.-|-|.--. .-.+ ..+..+ ..++.++||-|
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQE 80 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQE 80 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCce
Confidence 58999999876 99998886 7778889999999999995321 1111 112222 24799999999
Q ss_pred EEeE
Q 012987 136 ISTI 139 (452)
Q Consensus 136 is~~ 139 (452)
|...
T Consensus 81 IrIt 84 (254)
T COG4464 81 IRIT 84 (254)
T ss_pred EEEc
Confidence 9875
No 34
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=96.89 E-value=0.00069 Score=51.79 Aligned_cols=29 Identities=41% Similarity=0.515 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCeeeeccCCCCCCCCCCccCCCcc
Q 012987 324 TYTDLADTYGLLKLGGSDYHGRGGHGESELGSVK 357 (452)
Q Consensus 324 ~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~~ 357 (452)
+..++|++++|++++|||.|.+ .++|+..
T Consensus 6 ~A~~~A~~~~lp~~~gSDAH~~-----~~vG~~~ 34 (56)
T PF13263_consen 6 RAAELAEKYGLPFTGGSDAHFL-----EEVGRGY 34 (56)
T ss_dssp HHHHHHHHTT--EEEE--BSSG-----GGTTTTH
T ss_pred HHHHHHHHcCCCeEeEEcccCh-----hhcCCEe
Confidence 6889999999999999999986 4688753
No 35
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria. Proteins in this family are typically between 621 and 693 amino acids in length.
Probab=90.42 E-value=0.23 Score=54.65 Aligned_cols=49 Identities=29% Similarity=0.390 Sum_probs=38.9
Q ss_pred CCceEEceeeeCCCC-CC-----CCCHHHHHHHHHH--------------cCCcEEEEecCCCCCCHHH
Q 012987 70 DNNVVFELHSHSNFS-DG-----YLSPSKLVERAHC--------------NGVKVLALTDHDTMSGIPE 118 (452)
Q Consensus 70 ~~~~~vDLH~HT~~S-DG-----~~sp~elv~~A~~--------------~Gl~~iaITDHdt~~g~~~ 118 (452)
.+.++.|||+||.+| |. +.+|++--+.|+- .=||+++||||--..|...
T Consensus 4 ~~~yfGDlHlHT~~S~DA~~~G~~~~P~dAYRfAkGe~v~~~~G~~vqL~rPLDF~aVTDHaE~lG~~~ 72 (592)
T PF12228_consen 4 RQPYFGDLHLHTSYSFDAYAFGNRLTPDDAYRFAKGEPVTHPSGQPVQLDRPLDFLAVTDHAEFLGEVR 72 (592)
T ss_pred CcccccccccccccccchhhccCCCCHHHHHHHhcCCcccCCCCCEeeeCCCcceeEEcccHhhhhhHH
Confidence 357899999999999 53 5799988777763 4478999999988777643
No 36
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=86.89 E-value=18 Score=33.94 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCCCCChh---hhhhhhhhhhHHHHHhhHHHHHHHH
Q 012987 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLV---DVNFLEKIDNFLLLLCLRQITYTDL 328 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~---~~~~l~~~~n~~~l~~~~~~~~~~l 328 (452)
.++++++.... |+..+++|.+.. ....++.+++.|+ .+++........ ... ......
T Consensus 162 ~~~~~~~~~~~-~~~~~~~H~~~~--~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~----------------~~~~~~ 221 (275)
T cd01292 162 ALEDLVALLRL-GGRVVIGHVSHL--DPELLELLKEAGV-SLEVCPLSNYLLGRDGEG----------------AEALRR 221 (275)
T ss_pred CHHHHHHHHhc-CCCEEEECCccC--CHHHHHHHHHcCC-eEEECCcccccccCCcCC----------------cccHHH
Confidence 35667766554 788999999764 3456777777764 456554322110 000 011223
Q ss_pred HHHcCCeeeeccCCCCC
Q 012987 329 ADTYGLLKLGGSDYHGR 345 (452)
Q Consensus 329 A~~~gLl~tgGSDfHg~ 345 (452)
+.+.|..++-|||+...
T Consensus 222 ~~~~g~~~~lgTD~~~~ 238 (275)
T cd01292 222 LLELGIRVTLGTDGPPH 238 (275)
T ss_pred HHHCCCcEEEecCCCCC
Confidence 45668999999998654
No 37
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=86.42 E-value=1.3 Score=42.34 Aligned_cols=62 Identities=23% Similarity=0.407 Sum_probs=43.0
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEE
Q 012987 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (452)
Q Consensus 74 ~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis 137 (452)
.+|-|||-..+.-..+++++++.+.+.|++.+.+.-.+ ..++..+.+.+++.+ .+++++=+.
T Consensus 1 ~iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 1 LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTD-LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred CEEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 47999997543322379999999999999988854333 244566667777777 776655443
No 38
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=82.48 E-value=4.2 Score=41.05 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHcC-CEEEEeCCCC------C-CCcHHHHHHHHHcCCcEEEEeCCC-CChhhhhhhhhhhhHHHHHh
Q 012987 249 SEPLAEVAVQLIHRTG-GLAVLAHPWA------L-KNPAAIIRKLKDVGLHGLEVYRSD-GKLVDVNFLEKIDNFLLLLC 319 (452)
Q Consensus 249 ~~~~~eeaI~~I~~aG-GvaVLAHP~~------~-~~~~~li~~l~~~GldGIEV~~~~-~~~~~~~~l~~~~n~~~l~~ 319 (452)
....++|+|+..++-| ||.++.|=-. + ...++.++.+.+.|+.||=+-.=. ++.+-+++.
T Consensus 71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y----------- 139 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWY----------- 139 (273)
T ss_dssp TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHH-----------
T ss_pred CccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHH-----------
Confidence 4578999999999999 8888888644 2 123678888999999999995533 333333311
Q ss_pred hHHHHHHHHHHHcCCeeeeccCCCCCCCC
Q 012987 320 LRQITYTDLADTYGLLKLGGSDYHGRGGH 348 (452)
Q Consensus 320 ~~~~~~~~lA~~~gLl~tgGSDfHg~~~~ 348 (452)
..+.+-|.+|+|++ ||||+.++
T Consensus 140 ---~~i~~~AA~~~Lmv----nfHg~~kP 161 (273)
T PF10566_consen 140 ---EDILEDAAEYKLMV----NFHGATKP 161 (273)
T ss_dssp ---HHHHHHHHHTT-EE----EETTS---
T ss_pred ---HHHHHHHHHcCcEE----EecCCcCC
Confidence 15677899999998 79998654
No 39
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=81.02 E-value=3.7 Score=40.98 Aligned_cols=61 Identities=20% Similarity=0.380 Sum_probs=45.4
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEE
Q 012987 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~Gi 134 (452)
++.+|-|||-++..=....++++++|++.|+..+.++=- +......+.++++++. .+++.+
T Consensus 1 ~~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~-~~~~~~~~~~la~~y~-~v~~~~ 61 (256)
T COG0084 1 MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGT-DLEDFKRALELAEKYP-NVYAAV 61 (256)
T ss_pred CccEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEeec-CHHHHHHHHHHHHhCC-CeEEEE
Confidence 478999999998766668899999999999887776542 2344556778888876 444433
No 40
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=76.92 E-value=4.6 Score=39.64 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=43.4
Q ss_pred EceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEe
Q 012987 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (452)
Q Consensus 75 vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~ 138 (452)
+|.|||-...+-.....++++.|.+.|+..++++-.+. .......+.+++++..+++++=|-.
T Consensus 1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~GiHP 63 (255)
T PF01026_consen 1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVSTDP-EDWERVLELASQYPDRVYPALGIHP 63 (255)
T ss_dssp EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEESSH-HHHHHHHHHHHHTTTEEEEEE---G
T ss_pred CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCCCH-HHhHHHHHHHhcCCCeEEEEecCCc
Confidence 69999998843345688888999999999997765554 2445666677777777777666554
No 41
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.07 E-value=6.5 Score=38.56 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=47.5
Q ss_pred EceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEec--CCCCCCHHHHHHHHHhCCCeEEEEEEEEe
Q 012987 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTD--HDTMSGIPEAIETARRFGMKIIPGVEIST 138 (452)
Q Consensus 75 vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITD--Hdt~~g~~~~~~~a~~~gi~vI~GiEis~ 138 (452)
+-+|+++.+|+-...|+++++.+++.|.+.+.|-| .++..-..++.+.+++.|+.++. +++.
T Consensus 75 ~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~--~v~p 138 (244)
T PRK13125 75 VPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVF--FTSP 138 (244)
T ss_pred CCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEE--EECC
Confidence 34588999998777999999999999999999954 22233455677888899988755 4443
No 42
>PRK10812 putative DNAse; Provisional
Probab=72.88 E-value=7.8 Score=38.64 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=37.2
Q ss_pred eEEceeeeCC---CCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCC
Q 012987 73 VVFELHSHSN---FSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (452)
Q Consensus 73 ~~vDLH~HT~---~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~g 127 (452)
+.+|-|||-. +++=...+++++++|.+.|+..+.++=-+ ......+.++++++.
T Consensus 2 ~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~~-~~~~~~~~~l~~~~~ 58 (265)
T PRK10812 2 FLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATT-LPGYRHMRDLVGERD 58 (265)
T ss_pred ceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHhhCC
Confidence 4689999976 33223478999999999999876553322 334556667777664
No 43
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=72.15 E-value=14 Score=39.45 Aligned_cols=51 Identities=25% Similarity=0.432 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHcCCcEEEEecC-CCCCCHHHHHHHHHhCCCeEEEEEEEEeE
Q 012987 89 SPSKLVERAHCNGVKVLALTDH-DTMSGIPEAIETARRFGMKIIPGVEISTI 139 (452)
Q Consensus 89 sp~elv~~A~~~Gl~~iaITDH-dt~~g~~~~~~~a~~~gi~vI~GiEis~~ 139 (452)
-++..++.|.++|++.+=|-|- |.+.+...+.+++++.|..+.--+-.+++
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~s 150 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTS 150 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccC
Confidence 4677899999999999999886 56777888889999999866655555543
No 44
>PRK10425 DNase TatD; Provisional
Probab=70.89 E-value=8.6 Score=38.23 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.3
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCC
Q 012987 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (452)
Q Consensus 74 ~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~g 127 (452)
++|-|||-.+..-.-..++++++|++.|+..+.++--+ ...+.++.++++.+.
T Consensus 1 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~~ 53 (258)
T PRK10425 1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTN-LRESQQAQKLARQYP 53 (258)
T ss_pred CEEeeeCcCChhhhccHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHhCC
Confidence 47999997644333478899999999998777655433 444566777777664
No 45
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=70.43 E-value=9.3 Score=37.90 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=38.2
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCC
Q 012987 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~g 127 (452)
+-.+|-|||-.++.=....++++++|++.|+..+.++=- +......+.++++.+.
T Consensus 3 ~~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~ 57 (258)
T PRK11449 3 CRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT-EAENFARVLALAERYQ 57 (258)
T ss_pred ceEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeC-CHHHHHHHHHHHHhCC
Confidence 346899999876532337889999999999988766332 2444566667776654
No 46
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=68.73 E-value=12 Score=35.58 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=38.6
Q ss_pred EEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEE
Q 012987 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (452)
Q Consensus 74 ~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~Gi 134 (452)
.+|.|||.....+..+++++++.+.+.|+..+.+.--. ......+.+.+++. ..+++++
T Consensus 1 ~~D~H~H~~~~~~~~~~~~~l~~~~~~gv~~~v~~~~~-~~~~~~~~~la~~~-~~i~~~~ 59 (251)
T cd01310 1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTD-LKSSKRALELAKKY-DNVYAAV 59 (251)
T ss_pred CEEeeeCCCchhhccCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHHhC-CCeEEEE
Confidence 47999998654334688999999999998887776322 11244455566555 3444443
No 47
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=67.23 E-value=17 Score=39.56 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC-CCCHHHHHHHHHhCCCeEEEEEEEE
Q 012987 90 PSKLVERAHCNGVKVLALTDHDT-MSGIPEAIETARRFGMKIIPGVEIS 137 (452)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHdt-~~g~~~~~~~a~~~gi~vI~GiEis 137 (452)
.+..++.|.+.|++.+=|.||-+ +.....+.+.+++.|..+...+-.+
T Consensus 107 v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt 155 (468)
T PRK12581 107 VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYT 155 (468)
T ss_pred HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 45578999999999999999954 4566777888888998776444443
No 48
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=65.10 E-value=3 Score=41.52 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHcCCEEEEeCCCCCCC---cH-HHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHH
Q 012987 250 EPLAEVAVQLIHRTGGLAVLAHPWALKN---PA-AIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITY 325 (452)
Q Consensus 250 ~~~~eeaI~~I~~aGGvaVLAHP~~~~~---~~-~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~ 325 (452)
....++.++.|+..++.+.+.|||.... +. ...+ ...-.+.||++|+++.....+ .++
T Consensus 97 ~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~--~h~~~~~ve~~~~~~~~~~fn----------------~~~ 158 (258)
T COG0613 97 QLYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITR--AHIARDAVEVGNASTRQGVFN----------------KYL 158 (258)
T ss_pred cccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchh--hhhhhhhhccccccchHHHHH----------------HHH
Confidence 4678999999999999999999984311 10 0111 112368899999876554322 267
Q ss_pred HHHHHHcCCeeeeccCCCCC
Q 012987 326 TDLADTYGLLKLGGSDYHGR 345 (452)
Q Consensus 326 ~~lA~~~gLl~tgGSDfHg~ 345 (452)
.+++..++....++||.|-.
T Consensus 159 ~~~~~~~~~~~~~~~~~~i~ 178 (258)
T COG0613 159 KRGAPKYVPPEWADSEAHVG 178 (258)
T ss_pred hccCcccCcccccCHHHHHH
Confidence 88899999999999999954
No 49
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=62.90 E-value=17 Score=38.19 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHcCCEEE--EeCCCC
Q 012987 250 EPLAEVAVQLIHRTGGLAV--LAHPWA 274 (452)
Q Consensus 250 ~~~~eeaI~~I~~aGGvaV--LAHP~~ 274 (452)
-+....+.++||+.||.++ |+|+++
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~H~Gr 108 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLWHAGR 108 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccCcc
Confidence 4567889999999999887 799984
No 50
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=60.83 E-value=2.8 Score=38.83 Aligned_cols=20 Identities=50% Similarity=0.684 Sum_probs=0.0
Q ss_pred cccchhhhhhhccCCCCCCC
Q 012987 9 KRSKDKKKKKKQKRGGGKKK 28 (452)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (452)
|.++|+|+|||++.+|+|++
T Consensus 83 k~kKK~KKkkKkkKk~~k~~ 102 (154)
T PF06375_consen 83 KKKKKKKKKKKKKKKSKKRH 102 (154)
T ss_dssp --------------------
T ss_pred hhhhhccchhcccccCCCCC
Confidence 33344444444444444433
No 51
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=60.03 E-value=28 Score=33.93 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=32.5
Q ss_pred cHHHHHHHHHcCCcEEEEeCCC-------CChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccC
Q 012987 278 PAAIIRKLKDVGLHGLEVYRSD-------GKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSD 341 (452)
Q Consensus 278 ~~~li~~l~~~GldGIEV~~~~-------~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSD 341 (452)
....++.++++|++|||++... ....+. ..+.++++++||-+++..=
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~gl~v~s~~~ 68 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGI-----------------KQIKALAQTYQMPIIGYTP 68 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHH-----------------HHHHHHHHHcCCeEEEecC
Confidence 4677888899999999996421 111111 2678889999998876543
No 52
>PRK09358 adenosine deaminase; Provisional
Probab=59.74 E-value=7.4 Score=39.71 Aligned_cols=32 Identities=38% Similarity=0.522 Sum_probs=28.2
Q ss_pred CCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcE
Q 012987 70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (452)
Q Consensus 70 ~~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~ 104 (452)
....++|||+|- ||+++|+.+.+.|+++|++.
T Consensus 8 ~~lpK~eLH~Hl---~Gs~~~~~l~~l~~~~~~~~ 39 (340)
T PRK09358 8 RSLPKAELHLHL---DGSLRPETILELARRNGIAL 39 (340)
T ss_pred hcCCceeEEecc---cCCCCHHHHHHHHHHcCCCC
Confidence 346799999998 89999999999999999764
No 53
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=59.71 E-value=21 Score=37.28 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHcCC-EEEE----eCCCCCCCcHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHH
Q 012987 251 PLAEVAVQLIHRTGG-LAVL----AHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITY 325 (452)
Q Consensus 251 ~~~eeaI~~I~~aGG-vaVL----AHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~ 325 (452)
..++++|+..|++|- +-|. .|+.........++.|.+.|+|+|++-.+ .+
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dp-------------------------g~ 103 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADP-------------------------GL 103 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCH-------------------------HH
Confidence 457899999999999 3332 34433333346788899999999999875 46
Q ss_pred HHHHHHcC--CeeeeccC
Q 012987 326 TDLADTYG--LLKLGGSD 341 (452)
Q Consensus 326 ~~lA~~~g--Ll~tgGSD 341 (452)
..++++.+ |.+..+.=
T Consensus 104 i~l~~e~~p~l~ih~S~q 121 (347)
T COG0826 104 IMLARERGPDLPIHVSTQ 121 (347)
T ss_pred HHHHHHhCCCCcEEEeee
Confidence 77777776 77766643
No 54
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=59.02 E-value=65 Score=33.15 Aligned_cols=46 Identities=11% Similarity=0.314 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCC
Q 012987 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (452)
Q Consensus 251 ~~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~ 298 (452)
|...++++.|++.||+++.-|+... ...+++.+++.|.|++-+...
T Consensus 198 P~~krIi~~ik~~~g~piilH~cG~--~~~~l~~~~e~g~dvl~~d~~ 243 (321)
T cd03309 198 PRMQRIFDFLRSNTSALIVHHSCGA--AASLVPSMAEMGVDSWNVVMT 243 (321)
T ss_pred HHHHHHHHHHHhccCCceEEEeCCC--cHHHHHHHHHcCCCEEEecCC
Confidence 5678999999999888888898643 335788899999999887654
No 55
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=57.98 E-value=20 Score=37.89 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=44.2
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CC---CHHHHHHHHHhCCCeEEEEE
Q 012987 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MS---GIPEAIETARRFGMKIIPGV 134 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt--~~---g~~~~~~~a~~~gi~vI~Gi 134 (452)
+-++|.|+|...|- .+|+++.+.|...|+..+..--|.. +. ++..+.+.+++..+.++..+
T Consensus 9 PG~ID~H~Hi~~~~--~~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 9 PGFIDAHLHIESSM--LTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred cCEEEccCCcCCCC--CChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 34789999987652 5889999999999999988755543 23 34555666666677676665
No 56
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=56.64 E-value=26 Score=36.28 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCCC
Q 012987 251 PLAEVAVQLIHRTGGLAV--LAHPWAL 275 (452)
Q Consensus 251 ~~~eeaI~~I~~aGGvaV--LAHP~~~ 275 (452)
+.+.++++.||+.|+.++ |.|+++.
T Consensus 77 ~~~~~l~~~vh~~g~~~~~QL~h~G~~ 103 (353)
T cd02930 77 AGHRLITDAVHAEGGKIALQILHAGRY 103 (353)
T ss_pred HHHHHHHHHHHHcCCEEEeeccCCCCC
Confidence 456788999999999876 7887653
No 57
>PTZ00124 adenosine deaminase; Provisional
Probab=56.07 E-value=9.8 Score=39.86 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=28.0
Q ss_pred CCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcE
Q 012987 70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (452)
Q Consensus 70 ~~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~ 104 (452)
....+++||+|- ||+++|+.+.+.|+++|++.
T Consensus 33 ~~lPKvELH~HL---dGsi~~~tl~~La~~~~~~~ 64 (362)
T PTZ00124 33 KRIPKCELHCHL---DLCFSVDFFLSCIRKYNLQP 64 (362)
T ss_pred hcCCceeEeecc---cCCCCHHHHHHHHHHcCCCC
Confidence 345689999998 99999999999999999754
No 58
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=55.60 E-value=27 Score=33.99 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=31.6
Q ss_pred cHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 278 PAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 278 ~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
.++.++.+++.|++|||++.+... +.+ .+.++++++||-+|+
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~--~~~-----------------~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDY--DIE-----------------ELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCC--CHH-----------------HHHHHHHHcCCcEEE
Confidence 456788899999999999875321 111 577889999999886
No 59
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=54.48 E-value=11 Score=38.11 Aligned_cols=29 Identities=41% Similarity=0.473 Sum_probs=25.0
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCc
Q 012987 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~ 103 (452)
..++|||+|- +|.++++.+++.|++.+..
T Consensus 2 ~pK~eLH~HL---~Gsi~~~~l~ela~~~~~~ 30 (331)
T PF00962_consen 2 LPKAELHIHL---DGSISPETLLELAKKNNIC 30 (331)
T ss_dssp S-EEEEEEEG---GGSS-HHHHHHHHHHCTCC
T ss_pred CCEEEeeeCC---ccCCCHHHHHHHHHhCCCC
Confidence 5689999998 8999999999999999975
No 60
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=54.19 E-value=26 Score=33.85 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=32.2
Q ss_pred cHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeecc
Q 012987 278 PAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGS 340 (452)
Q Consensus 278 ~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGS 340 (452)
..+.++.+++.|++|||++.+.. ...+ .+.++++++||-+++-+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~--~~~~-----------------~l~~~l~~~gl~v~~~~ 59 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD--WDAE-----------------ALKARLAAAGLEQVLFN 59 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc--CCHH-----------------HHHHHHHHcCCeEEEEe
Confidence 35677788899999999987542 1111 57888999999888753
No 61
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=52.58 E-value=38 Score=35.75 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=43.2
Q ss_pred ceEEceeeeCCCCC--C--------------------CCCHHHHHHHHH-------HcCCcEEEEecCCCCCCHHHHHHH
Q 012987 72 NVVFELHSHSNFSD--G--------------------YLSPSKLVERAH-------CNGVKVLALTDHDTMSGIPEAIET 122 (452)
Q Consensus 72 ~~~vDLH~HT~~SD--G--------------------~~sp~elv~~A~-------~~Gl~~iaITDHdt~~g~~~~~~~ 122 (452)
|=+||.|+|...+. | .++|+++...|. ..|+..+. ||.+........++
T Consensus 56 PGlId~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~--d~~~~~~~~~~~~a 133 (445)
T PRK07228 56 PGLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIV--DMESVHHTDSAFEA 133 (445)
T ss_pred cCEEecccCCccccceeccCCCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEE--ccccccChHHHHHH
Confidence 44899999987641 1 135556555555 77876554 88766555666777
Q ss_pred HHhCCCeEEEEEEEE
Q 012987 123 ARRFGMKIIPGVEIS 137 (452)
Q Consensus 123 a~~~gi~vI~GiEis 137 (452)
+.+.|++.+.|.++.
T Consensus 134 ~~~~g~r~~~~~~~~ 148 (445)
T PRK07228 134 AGESGIRAVLGKVMM 148 (445)
T ss_pred HHHcCCeEEEeccee
Confidence 778899888777664
No 62
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=50.49 E-value=48 Score=29.96 Aligned_cols=41 Identities=5% Similarity=0.033 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhCCC
Q 012987 88 LSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGM 128 (452)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~~g--~~~~~~~a~~~gi 128 (452)
.+|+++++.|++.+.++|+++-..+..- ..+..+..++.|+
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 6999999999999999999999886553 5566666666665
No 63
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=50.40 E-value=32 Score=30.73 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhCC
Q 012987 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFG 127 (452)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~g 127 (452)
-+..+|+++++.|.+.+.++|+|+-.++.. ..+++.+..++.|
T Consensus 37 g~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 37 PLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 445799999999999999999999877533 3455555555543
No 64
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=49.81 E-value=73 Score=32.93 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=13.2
Q ss_pred HHHHHHHHHhCCCCCCHH
Q 012987 183 AKDMILKLNKLKLPLKWE 200 (452)
Q Consensus 183 ~~~~v~~L~~~Gi~i~~e 200 (452)
.+++++.++++|+.|+..
T Consensus 151 Gk~lV~~~N~LgIiiDlS 168 (313)
T COG2355 151 GKELVREMNELGIIIDLS 168 (313)
T ss_pred HHHHHHHHHhcCCEEEec
Confidence 456778888888887643
No 65
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=48.41 E-value=39 Score=34.97 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 012987 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (452)
Q Consensus 251 ~~~eeaI~~I~~aGGvaV--LAHP~~ 274 (452)
+...++++.||+.|+.++ |.|+++
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~ 106 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGR 106 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCC
Confidence 356788899999998876 678765
No 66
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=46.15 E-value=43 Score=34.96 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=9.9
Q ss_pred HHcCCcEEEEeC
Q 012987 286 KDVGLHGLEVYR 297 (452)
Q Consensus 286 ~~~GldGIEV~~ 297 (452)
.++|+||||+.-
T Consensus 169 ~~AGfDGVEIh~ 180 (362)
T PRK10605 169 REAGFDLVELHS 180 (362)
T ss_pred HHcCCCEEEEcc
Confidence 468999999963
No 67
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=45.47 E-value=46 Score=33.12 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCEEEEeCCCC--------CCCcHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHH
Q 012987 253 AEVAVQLIHRTGGLAVLAHPWA--------LKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQIT 324 (452)
Q Consensus 253 ~eeaI~~I~~aGGvaVLAHP~~--------~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~ 324 (452)
+.+-|++.|++| |..-|+. ....++.++..++.|++.||+-+...+..... ...
T Consensus 56 l~eki~l~~~~g---V~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~---------------r~~ 117 (244)
T PF02679_consen 56 LKEKIDLAHSHG---VYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEE---------------RLR 117 (244)
T ss_dssp HHHHHHHHHCTT----EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHH---------------HHH
T ss_pred HHHHHHHHHHcC---CeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHH---------------HHH
Confidence 789999999988 3333432 12346788889999999999999866543322 125
Q ss_pred HHHHHHHcCCeee
Q 012987 325 YTDLADTYGLLKL 337 (452)
Q Consensus 325 ~~~lA~~~gLl~t 337 (452)
+.+.|++.|+.+.
T Consensus 118 ~I~~~~~~Gf~v~ 130 (244)
T PF02679_consen 118 LIRKAKEEGFKVL 130 (244)
T ss_dssp HHHHHCCTTSEEE
T ss_pred HHHHHHHCCCEEe
Confidence 7777888887654
No 68
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=44.81 E-value=70 Score=28.70 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhCCC
Q 012987 88 LSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGM 128 (452)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi 128 (452)
.+|+++++.|.+.+.++|+++-..+.. ...+..+..++.|+
T Consensus 37 v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 37 SPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGL 79 (128)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCC
Confidence 689999999999999999999887655 34556666665554
No 69
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=44.26 E-value=21 Score=36.02 Aligned_cols=30 Identities=40% Similarity=0.548 Sum_probs=26.6
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcE
Q 012987 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~ 104 (452)
..+++||+|- +|+++++.+.+.+.+.|.+.
T Consensus 2 lpK~elH~Hl---~Gs~~~~~l~~~~~~~~~~~ 31 (325)
T cd01320 2 LPKAELHLHL---DGSLRPETILELAKKNGITL 31 (325)
T ss_pred CCceEEeecc---cCCCCHHHHHHHHHHhCCCC
Confidence 4689999998 89999999999999998664
No 70
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=44.18 E-value=20 Score=36.25 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=26.5
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcE
Q 012987 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (452)
Q Consensus 73 ~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~ 104 (452)
.++|||+|- ||.++++.+.+.+.+.|++.
T Consensus 2 pK~eLH~Hl---~Gsi~~~~l~~l~~~~~~~~ 30 (324)
T TIGR01430 2 PKAELHLHL---EGSIRPETLLELAQKNGIPL 30 (324)
T ss_pred CceeeEecc---cCCCCHHHHHHHHHHcCCCC
Confidence 579999998 89999999999999999875
No 71
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=44.08 E-value=59 Score=36.51 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCcEEEEecCC-CCCCHHHHHHHHHhCCCeEEEEEEEEe
Q 012987 90 PSKLVERAHCNGVKVLALTDHD-TMSGIPEAIETARRFGMKIIPGVEIST 138 (452)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHd-t~~g~~~~~~~a~~~gi~vI~GiEis~ 138 (452)
.+..++.|+++|++.+=|-||- .+.....+.+++++.|..+...+-++.
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~ 147 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT 147 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC
Confidence 4568889999999999999994 456677788888899987777666665
No 72
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.88 E-value=52 Score=34.45 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 012987 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaV--LAHP~~ 274 (452)
.+.++++.||+.|+.++ |.|+++
T Consensus 79 ~~~~l~d~vh~~Ga~i~~QL~H~Gr 103 (361)
T cd04747 79 GWKKVVDEVHAAGGKIAPQLWHVGA 103 (361)
T ss_pred HHHHHHHHHHhcCCEEEEeccCCCC
Confidence 45678888888888765 677764
No 73
>PRK08508 biotin synthase; Provisional
Probab=43.57 E-value=1.1e+02 Score=30.70 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=27.5
Q ss_pred HHHHHHHHHcC-CEEEEeCCCCCCCcHHHHHHHHHcCCcEEE
Q 012987 254 EVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLE 294 (452)
Q Consensus 254 eeaI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GldGIE 294 (452)
.++++.|++.+ ++.+.+-.+.. ..+.+.+|+++|+|.+=
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~--~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTA--SVEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCC--CHHHHHHHHHcCCCEEc
Confidence 57778888876 77766544332 35678899999987654
No 74
>PRK06256 biotin synthase; Validated
Probab=42.30 E-value=89 Score=31.78 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEE
Q 012987 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (452)
Q Consensus 253 ~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 295 (452)
+.++++.|++.-++.+.++.+. ...+.+..|+++|++.+-+
T Consensus 128 ~~e~i~~i~~~~~i~~~~~~g~--l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 128 VVEAVKAIKEETDLEICACLGL--LTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred HHHHHHHHHhcCCCcEEecCCc--CCHHHHHHHHHhCCCEEec
Confidence 4567777776666667777654 2346777888888887654
No 75
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.77 E-value=50 Score=34.24 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 012987 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (452)
Q Consensus 251 ~~~eeaI~~I~~aGGvaV--LAHP~~ 274 (452)
+...++++.||+.|+.++ |.|+++
T Consensus 78 ~~~~~l~~~vh~~G~~i~~QL~h~G~ 103 (353)
T cd04735 78 PGLRKLAQAIKSKGAKAILQIFHAGR 103 (353)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 466889999999999876 678764
No 76
>PRK09989 hypothetical protein; Provisional
Probab=41.69 E-value=58 Score=31.69 Aligned_cols=40 Identities=8% Similarity=-0.024 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCcEEEEeCCC-CChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 279 AAIIRKLKDVGLHGLEVYRSD-GKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 279 ~~li~~l~~~GldGIEV~~~~-~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
.+.++.++++|+||||+..+. ++.+ .+.++.+++||-+++
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~~~~~--------------------~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYDYSTL--------------------QIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCHH--------------------HHHHHHHHcCCcEEE
Confidence 456778888999999986542 2222 467788899998885
No 77
>PRK15108 biotin synthase; Provisional
Probab=41.38 E-value=1.3e+02 Score=31.10 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEE
Q 012987 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (452)
Q Consensus 253 ~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 295 (452)
+.++++.|++. |+.+.++.+.. ..+.+.+|+++|+|++=+
T Consensus 113 i~~~i~~ik~~-~i~v~~s~G~l--s~e~l~~LkeAGld~~n~ 152 (345)
T PRK15108 113 LEQMVQGVKAM-GLETCMTLGTL--SESQAQRLANAGLDYYNH 152 (345)
T ss_pred HHHHHHHHHhC-CCEEEEeCCcC--CHHHHHHHHHcCCCEEee
Confidence 46788888876 46666776633 367888999999996544
No 78
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=41.05 E-value=1.1e+02 Score=29.89 Aligned_cols=49 Identities=8% Similarity=0.094 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCCCCChh
Q 012987 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLV 303 (452)
Q Consensus 254 eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~ 303 (452)
.++....++.+=|+|+.+.-. ..-..+...|.+.|++.||+-.......
T Consensus 4 ~~~~~~l~~~~vI~Vlr~~~~-e~a~~~a~Ali~gGi~~IEITl~sp~a~ 52 (211)
T COG0800 4 MKILSKLKAQPVVPVIRGDDV-EEALPLAKALIEGGIPAIEITLRTPAAL 52 (211)
T ss_pred hHHHHHHHHCCeeEEEEeCCH-HHHHHHHHHHHHcCCCeEEEecCCCCHH
Confidence 467778888899999987631 1112466778899999999987654444
No 79
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=40.86 E-value=58 Score=33.66 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 012987 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaV--LAHP~~ 274 (452)
.+.++++.||+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~g~~~~~Ql~H~G~ 102 (343)
T cd04734 78 GFRRLAEAVHAHGAVIMIQLTHLGR 102 (343)
T ss_pred HHHHHHHHHHhcCCeEEEeccCCCc
Confidence 35677888888887766 677654
No 80
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=40.73 E-value=1.8e+02 Score=29.53 Aligned_cols=83 Identities=19% Similarity=0.196 Sum_probs=54.2
Q ss_pred cCCEEEEeCCCCCCCc--HHHHHHHHHcCCcEEEEeCCCC-ChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHc-CCeeee
Q 012987 263 TGGLAVLAHPWALKNP--AAIIRKLKDVGLHGLEVYRSDG-KLVDVNFLEKIDNFLLLLCLRQITYTDLADTY-GLLKLG 338 (452)
Q Consensus 263 aGGvaVLAHP~~~~~~--~~li~~l~~~GldGIEV~~~~~-~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~-gLl~tg 338 (452)
.|.++|++|-...... .++.+...+.|.||+=+..|++ ...+.. + ..++.++|+.- +|.+.-
T Consensus 75 ~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~----------l----~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 75 AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDT----------A----VQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHH----------H----HHHHHHHHHhCCCCcEEE
Confidence 3459999998764432 3455666788999999998853 332221 1 12788888887 576665
Q ss_pred ccCCCCCCCCCCccCCCccCChhHHHHHhc
Q 012987 339 GSDYHGRGGHGESELGSVKLPVLVLNDFLK 368 (452)
Q Consensus 339 GSDfHg~~~~~~~~lG~~~~p~~~~~~~~~ 368 (452)
||-|. ..| +.+|.+++.++.+
T Consensus 141 ---Yn~P~-----~tg-~~l~~~~l~~L~~ 161 (309)
T cd00952 141 ---YANPE-----AFK-FDFPRAAWAELAQ 161 (309)
T ss_pred ---EcCch-----hcC-CCCCHHHHHHHhc
Confidence 66652 222 5678888888764
No 81
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=39.30 E-value=1e+02 Score=29.98 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=42.4
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhCCCeEEEEEEEEe
Q 012987 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPGVEIST 138 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g--~~~~~~~a~~~gi~vI~GiEis~ 138 (452)
..++|+|+|+ .+|+..++.+.+.|.+.+.| |-.... ..++.+.+++.|+ ..|+.+.+
T Consensus 65 ~~~lDvHLm~------~~p~~~i~~~~~~Gad~itv--H~ea~~~~~~~~l~~ik~~G~--~~gval~p 123 (228)
T PTZ00170 65 NTFLDCHLMV------SNPEKWVDDFAKAGASQFTF--HIEATEDDPKAVARKIREAGM--KVGVAIKP 123 (228)
T ss_pred CCCEEEEECC------CCHHHHHHHHHHcCCCEEEE--eccCCchHHHHHHHHHHHCCC--eEEEEECC
Confidence 5678999995 58999999999999998877 644322 4566677778885 45666654
No 82
>PLN02905 beta-amylase
Probab=39.12 E-value=95 Score=35.07 Aligned_cols=111 Identities=19% Similarity=0.348 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCcEEEE--eCCC---CChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCCCCCccCC
Q 012987 280 AIIRKLKDVGLHGLEV--YRSD---GKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELG 354 (452)
Q Consensus 280 ~li~~l~~~GldGIEV--~~~~---~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG 354 (452)
..+..|+.+|+|||+| |... ..+.+-++ +-. ..+.+++++.||-+-.==-||.-+. .+|
T Consensus 290 a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdW----sgY--------~~L~~mvr~~GLKlqvVMSFHqCGG----NVG 353 (702)
T PLN02905 290 KQLRILKSINVDGVKVDCWWGIVEAHAPQEYNW----NGY--------KRLFQMVRELKLKLQVVMSFHECGG----NVG 353 (702)
T ss_pred HHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCc----HHH--------HHHHHHHHHcCCeEEEEEEecccCC----CCC
Confidence 4577889999999987 3321 11111110 000 1578999999998888788998653 355
Q ss_pred C-c--cCChhHHHHHhccccccchhHHHHHH--hhhcCCCCCCCccchhhcc--cccccCCCccCCCchhhHH
Q 012987 355 S-V--KLPVLVLNDFLKVARPIWCGAIKEIL--ESYADEPSDSNLSHITRYG--RGKMLKRNYPLNCGKGLVD 420 (452)
Q Consensus 355 ~-~--~~p~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 420 (452)
. | +||. |...+-+.. --|+++.-.-|-+-|. +| ....++|-+|+.|=.|++.
T Consensus 354 D~~~IPLP~-------------WV~e~g~~nPDifftDrsG~rn~EyLS-lg~D~~pvl~GRTplq~Y~DFM~ 412 (702)
T PLN02905 354 DDVCIPLPH-------------WVAEIGRSNPDIFFTDREGRRNPECLS-WGIDKERILRGRTALEVYFDYMR 412 (702)
T ss_pred CcccccCCH-------------HHHHhhhcCCCceEecCCCCccCceee-eecccccccCCCCHHHHHHHHHH
Confidence 3 3 4555 433322221 1244443333333333 33 3455677777777666654
No 83
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=38.18 E-value=81 Score=30.46 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=36.4
Q ss_pred EEEeCCCCC----CCcHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 267 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 267 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
|..|+|+.. ...+..++...-+|+ -| .|+.+..++.-.. ..+.++|++|+|.++.
T Consensus 129 PL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicEil~~dG~m~~~-----------------~~~~~fA~~~~l~~is 191 (199)
T TIGR00506 129 PLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDDGTMARK-----------------PELMEYAKKHNLKLIS 191 (199)
T ss_pred eEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEEEeCCCCCccCH-----------------HHHHHHHHHcCCcEEE
Confidence 456666422 223334443344565 34 6888875554332 2689999999999999
Q ss_pred ccC
Q 012987 339 GSD 341 (452)
Q Consensus 339 GSD 341 (452)
++|
T Consensus 192 i~d 194 (199)
T TIGR00506 192 IED 194 (199)
T ss_pred HHH
Confidence 887
No 84
>PRK10027 cryptic adenine deaminase; Provisional
Probab=37.68 E-value=50 Score=36.96 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=42.3
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CC---CHHHHHHHHHhCCCeEEEEEE
Q 012987 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MS---GIPEAIETARRFGMKIIPGVE 135 (452)
Q Consensus 73 ~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt--~~---g~~~~~~~a~~~gi~vI~GiE 135 (452)
=++|.|+|...| ..+|+++...|...|+..+..--|.. +. ++..+.+.+...++.+.+.+-
T Consensus 85 GlIDaHvHiess--~~~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~p 150 (588)
T PRK10027 85 GFIDAHLHIESS--MMTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVS 150 (588)
T ss_pred CeEeccccCCcc--cCCHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeec
Confidence 379999997654 25899999999999999888755532 22 445555555666666655554
No 85
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=37.42 E-value=1.1e+02 Score=30.44 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCC
Q 012987 280 AIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDY 342 (452)
Q Consensus 280 ~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDf 342 (452)
..+..++++|+.+|=..|..+++ .+.++|+++||++......
T Consensus 40 ~d~~l~k~~G~N~iR~~h~p~~~---------------------~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 40 RDLELMKEMGFNAIRTHHYPPSP---------------------RFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp HHHHHHHHTT-SEEEETTS--SH---------------------HHHHHHHHHT-EEEEE-S-
T ss_pred HHHHHHHhcCcceEEcccccCcH---------------------HHHHHHhhcCCEEEEeccc
Confidence 34666889999999987643332 5788999999999877665
No 86
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.28 E-value=46 Score=32.24 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEE
Q 012987 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135 (452)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiE 135 (452)
=|+..-.+.++.|.+.|.+++- +-.-.++..++|++.|+.++||+.
T Consensus 72 aGTV~~~~~~~~a~~aGA~Fiv-----sP~~~~~v~~~~~~~~i~~iPG~~ 117 (213)
T PRK06552 72 AGTVLDAVTARLAILAGAQFIV-----SPSFNRETAKICNLYQIPYLPGCM 117 (213)
T ss_pred eeeCCCHHHHHHHHHcCCCEEE-----CCCCCHHHHHHHHHcCCCEECCcC
Confidence 3555556678999999999987 334457888999999999999986
No 87
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=37.15 E-value=1.8e+02 Score=30.74 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHcCCEEEEeCCC--CCCCcHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHH
Q 012987 249 SEPLAEVAVQLIHRTGGLAVLAHPW--ALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYT 326 (452)
Q Consensus 249 ~~~~~eeaI~~I~~aGGvaVLAHP~--~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~ 326 (452)
+..+.-..+..|-..|+.||.+--. .+.-....+++...-...+|=..|-.+.+-+++ .+.
T Consensus 80 ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~-----------------~i~ 142 (374)
T COG0399 80 PSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMD-----------------AIM 142 (374)
T ss_pred cCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCCCHH-----------------HHH
Confidence 4567788899999999999998642 222234556665555688888888877776765 689
Q ss_pred HHHHHcCCeee
Q 012987 327 DLADTYGLLKL 337 (452)
Q Consensus 327 ~lA~~~gLl~t 337 (452)
++|++|||.+.
T Consensus 143 ~la~~~~l~vI 153 (374)
T COG0399 143 ALAKRHGLPVI 153 (374)
T ss_pred HHHHHcCCeEE
Confidence 99999999875
No 88
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=36.54 E-value=93 Score=30.77 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=37.7
Q ss_pred EEEeCCCCC----CCcHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 267 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 267 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
+..|+|+.. ...+..++...-+|+ -| .|+.+.+++.-.. ..+.++|++|+|.++.
T Consensus 144 PL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~vicEil~~dG~ma~~-----------------~~l~~fA~~~~l~iis 206 (230)
T PRK00014 144 PLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRG-----------------ASLERYAAKEGLVALA 206 (230)
T ss_pred eEEecCCCEecCCCccHHHHHHHHHcCCCceEEEEEEeCCCCCccCH-----------------HHHHHHHHHcCCcEEE
Confidence 466666532 223444443344565 45 7888876654432 2689999999999999
Q ss_pred ccCC
Q 012987 339 GSDY 342 (452)
Q Consensus 339 GSDf 342 (452)
++|.
T Consensus 207 i~dl 210 (230)
T PRK00014 207 IDEL 210 (230)
T ss_pred HHHH
Confidence 9883
No 89
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=36.27 E-value=67 Score=33.07 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 012987 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaV--LAHP~~ 274 (452)
...++++.||+.|+.++ |.|+++
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G~ 105 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAGR 105 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--GG
T ss_pred HHHHHHHHHHhcCccceeecccccc
Confidence 45788999999999988 478753
No 90
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=35.99 E-value=72 Score=33.53 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHcCCEEE--EeCC
Q 012987 252 LAEVAVQLIHRTGGLAV--LAHP 272 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaV--LAHP 272 (452)
.+..++++||+.|+.++ |.|.
T Consensus 84 ~~k~l~davh~~G~~i~~QL~H~ 106 (382)
T cd02931 84 TAKEMTERVHAYGTKIFLQLTAG 106 (382)
T ss_pred HHHHHHHHHHHcCCEEEEEccCc
Confidence 45677788888888766 4574
No 91
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=35.71 E-value=2.9e+02 Score=27.57 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=52.9
Q ss_pred CCEEEEeCCCCCCC--cHHHHHHHHHcCCcEEEEeCCCCCh-hhhhhhhhhhhHHHHHhhHHHHHHHHHHHc-CCeeeec
Q 012987 264 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGKL-VDVNFLEKIDNFLLLLCLRQITYTDLADTY-GLLKLGG 339 (452)
Q Consensus 264 GGvaVLAHP~~~~~--~~~li~~l~~~GldGIEV~~~~~~~-~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~-gLl~tgG 339 (452)
|.++|+|+-..... ..++.+...+.|.||+=+..|.+.. .+.+ + ..++.++|+.- ++.+.-
T Consensus 69 ~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~----------i----~~~~~~v~~a~~~lpi~i- 133 (288)
T cd00954 69 GKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEE----------I----KDYYREIIAAAASLPMII- 133 (288)
T ss_pred CCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHH----------H----HHHHHHHHHhcCCCCEEE-
Confidence 45899998865432 2245556678999999998875432 2211 1 12788888887 777766
Q ss_pred cCCCCCCCCCCccCCCccCChhHHHHHhc
Q 012987 340 SDYHGRGGHGESELGSVKLPVLVLNDFLK 368 (452)
Q Consensus 340 SDfHg~~~~~~~~lG~~~~p~~~~~~~~~ 368 (452)
|+-|. ...+.++.+.+.+|.+
T Consensus 134 --Yn~P~------~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 134 --YHIPA------LTGVNLTLEQFLELFE 154 (288)
T ss_pred --EeCcc------ccCCCCCHHHHHHHhc
Confidence 66552 2245677777777764
No 92
>PLN02705 beta-amylase
Probab=35.53 E-value=1.4e+02 Score=33.70 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCcEEEE--eCCC---CChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCC
Q 012987 280 AIIRKLKDVGLHGLEV--YRSD---GKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGG 347 (452)
Q Consensus 280 ~li~~l~~~GldGIEV--~~~~---~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~ 347 (452)
..+..|+.+|+|||+| |... ..+.+-++ +-. ..+.+++++.||-+-.==-||.-+.
T Consensus 272 a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdW----sgY--------~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 272 QELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVW----SGY--------RELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred HHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCc----HHH--------HHHHHHHHHcCCeEEEEEEeeccCC
Confidence 4577789999999987 3321 11111110 000 1578999999998887778998653
No 93
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.53 E-value=48 Score=33.50 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=10.5
Q ss_pred HHHcCCcEEEEeC
Q 012987 285 LKDVGLHGLEVYR 297 (452)
Q Consensus 285 l~~~GldGIEV~~ 297 (452)
+.++|+||||+.-
T Consensus 150 a~~aGfDgveih~ 162 (327)
T cd02803 150 AKEAGFDGVEIHG 162 (327)
T ss_pred HHHcCCCEEEEcc
Confidence 4568999999964
No 94
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=35.43 E-value=78 Score=32.70 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCC
Q 012987 252 LAEVAVQLIHRTGGLAV--LAHPW 273 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaV--LAHP~ 273 (452)
.+.++++.||+.|+.++ |.|++
T Consensus 78 ~lr~la~~vh~~ga~~~~QL~H~G 101 (338)
T cd02933 78 GWKKVTDAVHAKGGKIFLQLWHVG 101 (338)
T ss_pred HHHHHHHHHHhcCCeEEEEcccCc
Confidence 34566777777777644 56654
No 95
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.18 E-value=1e+02 Score=30.12 Aligned_cols=52 Identities=8% Similarity=0.030 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 279 AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 279 ~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
++.++...++|++|||+.-..... .... .+.+. .....+.++++++||-+++
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~-~~~~-~~~~~------~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDE-RLAR-LDWSK------EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCccc-cccc-ccCCH------HHHHHHHHHHHHcCCCceE
Confidence 456777788899999986322100 0000 00000 0012678889999987764
No 96
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.17 E-value=82 Score=32.33 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCEEE--EeCCCCCCC---------------------------------cHHHHHHH-------HHcCC
Q 012987 253 AEVAVQLIHRTGGLAV--LAHPWALKN---------------------------------PAAIIRKL-------KDVGL 290 (452)
Q Consensus 253 ~eeaI~~I~~aGGvaV--LAHP~~~~~---------------------------------~~~li~~l-------~~~Gl 290 (452)
+..+++.||+.|+.++ |.|.++... ...+++.+ +.+|+
T Consensus 84 ~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGf 163 (338)
T cd04733 84 FREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGF 163 (338)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCC
Q ss_pred cEEEEe
Q 012987 291 HGLEVY 296 (452)
Q Consensus 291 dGIEV~ 296 (452)
||||+.
T Consensus 164 DgVeih 169 (338)
T cd04733 164 DGVQIH 169 (338)
T ss_pred CEEEEc
No 97
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=34.90 E-value=1.3e+02 Score=29.94 Aligned_cols=67 Identities=12% Similarity=0.240 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCEEEEeCCCC-C-------CCcHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHH
Q 012987 253 AEVAVQLIHRTGGLAVLAHPWA-L-------KNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQIT 324 (452)
Q Consensus 253 ~eeaI~~I~~aGGvaVLAHP~~-~-------~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~ 324 (452)
+.|.|++.|++| |..-|+. + ...+..+++.++.|++.||+-+..-+...-. ..+
T Consensus 43 l~eki~la~~~~---V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~---------------~~r 104 (237)
T TIGR03849 43 VKEKIEMYKDYG---IKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEE---------------RCN 104 (237)
T ss_pred HHHHHHHHHHcC---CeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHH---------------HHH
Confidence 678888888877 3333442 1 1235677788999999999998865433221 126
Q ss_pred HHHHHHHcCCeee
Q 012987 325 YTDLADTYGLLKL 337 (452)
Q Consensus 325 ~~~lA~~~gLl~t 337 (452)
+.+.++++||.+-
T Consensus 105 lI~~~~~~g~~v~ 117 (237)
T TIGR03849 105 LIERAKDNGFMVL 117 (237)
T ss_pred HHHHHHhCCCeEe
Confidence 7788888887654
No 98
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=34.70 E-value=1e+02 Score=30.23 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=35.9
Q ss_pred EEEeCCCCC----CCcHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 267 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 267 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
++.|.|+.. ...+..++...-+|+ -| .|+.+..++..... .+.++|++|+|.++.
T Consensus 139 PL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~-----------------~~~~fA~~~~l~~is 201 (214)
T PRK01792 139 PLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDDGTMARTP-----------------EIVEFAKKFGYAVVT 201 (214)
T ss_pred eEEeccCCCccCCChHHHHHHHHHHcCCCceEEEEEEecCCCCccCHH-----------------HHHHHHHHcCCcEEE
Confidence 455666422 223333433344555 35 78887665544322 689999999999999
Q ss_pred ccC
Q 012987 339 GSD 341 (452)
Q Consensus 339 GSD 341 (452)
++|
T Consensus 202 i~d 204 (214)
T PRK01792 202 IED 204 (214)
T ss_pred HHH
Confidence 887
No 99
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=34.64 E-value=86 Score=26.82 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEE
Q 012987 88 LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIP 132 (452)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~ 132 (452)
...-+.++.|+++|...|+||+.. ++.+.+.+.++.+++
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~------~l~~~~~~~~~~~~~ 95 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGG------KLLEMAREHGVPVII 95 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc------hHHHHHHHcCCcEEE
Confidence 456678999999999999999632 255566666655543
No 100
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=34.48 E-value=4.8e+02 Score=25.96 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH----HhCCCeEEE
Q 012987 92 KLVERAHCNGVKVLALTDHDTMSGIPEAIETA----RRFGMKIIP 132 (452)
Q Consensus 92 elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a----~~~gi~vI~ 132 (452)
+.++..+..|.++|.|||+-.-.......+.+ +..|+.+||
T Consensus 19 ~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~ 63 (272)
T TIGR00676 19 ETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVP 63 (272)
T ss_pred HHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeE
Confidence 34556667789999999985433333333332 244666554
No 101
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=34.08 E-value=61 Score=31.13 Aligned_cols=45 Identities=33% Similarity=0.491 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEE
Q 012987 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (452)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~Gi 134 (452)
=|+..-.+.++.|.+.|.+++--- | -.++..+.|+++++.++||+
T Consensus 64 AGTV~~~e~a~~a~~aGA~FivSP-~----~~~~v~~~~~~~~i~~iPG~ 108 (196)
T PF01081_consen 64 AGTVLTAEQAEAAIAAGAQFIVSP-G----FDPEVIEYAREYGIPYIPGV 108 (196)
T ss_dssp EES--SHHHHHHHHHHT-SEEEES-S------HHHHHHHHHHTSEEEEEE
T ss_pred EEeccCHHHHHHHHHcCCCEEECC-C----CCHHHHHHHHHcCCcccCCc
Confidence 356666678999999999988643 2 23778899999999999998
No 102
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=34.04 E-value=1.1e+02 Score=30.04 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=36.5
Q ss_pred EEEeCCCCC----CCcHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 267 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 267 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
+..|+|+.. ...+..++...-+|+ -| .|+.+..++.... ..+.++|++|+|.++.
T Consensus 140 PL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~dG~ma~~-----------------~~l~~fA~~h~l~~is 202 (218)
T PRK00910 140 PLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKT-----------------PEIIAFGKLHNMPVLT 202 (218)
T ss_pred eEEeCCCCEecCCCccHHHHHHHHHcCCCceEEEEEEecCCCCcCCH-----------------HHHHHHHHHcCCcEEE
Confidence 455666422 223444443344565 35 7888876554332 2689999999999999
Q ss_pred ccC
Q 012987 339 GSD 341 (452)
Q Consensus 339 GSD 341 (452)
++|
T Consensus 203 i~d 205 (218)
T PRK00910 203 IED 205 (218)
T ss_pred HHH
Confidence 888
No 103
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=33.90 E-value=52 Score=31.81 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEE
Q 012987 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (452)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~Gi 134 (452)
=|+..-.+-++.|.+.|.+++ +|-+- .++..+.|+++|+.++||+
T Consensus 64 AGTVl~~~~a~~a~~aGA~Fi-vsP~~----~~~v~~~~~~~~i~~iPG~ 108 (204)
T TIGR01182 64 AGTVLNPEQLRQAVDAGAQFI-VSPGL----TPELAKHAQDHGIPIIPGV 108 (204)
T ss_pred EEeCCCHHHHHHHHHcCCCEE-ECCCC----CHHHHHHHHHcCCcEECCC
Confidence 355555567999999999999 65553 3578888999999999997
No 104
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.56 E-value=2.6e+02 Score=27.92 Aligned_cols=53 Identities=11% Similarity=-0.043 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHcCCEEEEeCCCC-CCCcHHHHHHHHHcCCcEEEEeCCCCChh
Q 012987 250 EPLAEVAVQLIHRTGGLAVLAHPWA-LKNPAAIIRKLKDVGLHGLEVYRSDGKLV 303 (452)
Q Consensus 250 ~~~~eeaI~~I~~aGGvaVLAHP~~-~~~~~~li~~l~~~GldGIEV~~~~~~~~ 303 (452)
...++..++.++++|---++- |.. +.....++..+.+.|++=|=.+.|..+.+
T Consensus 103 ~~G~e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~e 156 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDE 156 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 346666777777765444433 311 11122445555666777776566655444
No 105
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.93 E-value=1.2e+02 Score=28.45 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=34.6
Q ss_pred ceEEceeeeCCCCCCCCCHHHH-HHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhCCCeEEEE
Q 012987 72 NVVFELHSHSNFSDGYLSPSKL-VERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPG 133 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~el-v~~A~~~Gl~~iaITDHdt~~g--~~~~~~~a~~~gi~vI~G 133 (452)
.+.+|+|++ .|... ++.+.+.|.++|.+ |-.... ..++.+.++++|++++++
T Consensus 54 ~i~~d~k~~--------d~~~~~~~~~~~~Gad~i~v--h~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 54 KVLADLKTM--------DAGEYEAEQAFAAGADIVTV--LGVADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEEEEEeec--------cchHHHHHHHHHcCCCEEEE--eccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 345555554 34344 89999999998874 222221 367788888999888774
No 106
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.55 E-value=90 Score=31.96 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHcCCEEE--EeCCCC
Q 012987 252 LAEVAVQLIHRTGGLAV--LAHPWA 274 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaV--LAHP~~ 274 (452)
.+.+++++||+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~G~~~~~QL~H~G~ 102 (336)
T cd02932 78 ALKRIVDFIHSQGAKIGIQLAHAGR 102 (336)
T ss_pred HHHHHHHHHHhcCCcEEEEccCCCc
Confidence 45667778888887765 456543
No 107
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.10 E-value=2.1e+02 Score=28.27 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcC
Q 012987 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYG 333 (452)
Q Consensus 254 eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~g 333 (452)
+|+.+.|.+++|++|..-+. ..++.|...|..-|-+..|+..+-. ..-.+|-..+|
T Consensus 88 ~ei~~~ie~~~~v~vvTts~------Avv~aL~al~a~ri~vlTPY~~evn------------------~~e~ef~~~~G 143 (238)
T COG3473 88 KEIAQRIEEAKGVPVVTTST------AVVEALNALGAQRISVLTPYIDEVN------------------QREIEFLEANG 143 (238)
T ss_pred HHHHHHHHhccCCceeechH------HHHHHHHhhCcceEEEeccchhhhh------------------hHHHHHHHhCC
Confidence 68889999999999998653 5788899999999999999764321 14567777888
Q ss_pred CeeeeccCCCCCCCCCCccCCCcc
Q 012987 334 LLKLGGSDYHGRGGHGESELGSVK 357 (452)
Q Consensus 334 Ll~tgGSDfHg~~~~~~~~lG~~~ 357 (452)
+-+. ||-+-+-.+..++|++.
T Consensus 144 feiv---~~~~Lgi~dn~eigr~~ 164 (238)
T COG3473 144 FEIV---DFKGLGITDNLEIGRQE 164 (238)
T ss_pred eEEE---EeeccCCcccchhcccC
Confidence 7664 56665555557788765
No 108
>PRK07094 biotin synthase; Provisional
Probab=31.99 E-value=2.2e+02 Score=28.63 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEE
Q 012987 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLE 294 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIE 294 (452)
.+.++++.|++..++.+-.+++. ...+.++.|+++|++.+-
T Consensus 104 ~l~~l~~~i~~~~~l~i~~~~g~--~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 104 KIADIIKEIKKELDVAITLSLGE--RSYEEYKAWKEAGADRYL 144 (323)
T ss_pred HHHHHHHHHHccCCceEEEecCC--CCHHHHHHHHHcCCCEEE
Confidence 35677777777666766666643 235678888888987543
No 109
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=31.46 E-value=1e+02 Score=32.27 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=10.3
Q ss_pred HHcCCcEEEEeCC
Q 012987 286 KDVGLHGLEVYRS 298 (452)
Q Consensus 286 ~~~GldGIEV~~~ 298 (452)
.++|+||||+.-.
T Consensus 160 ~~aGfDgVEih~a 172 (370)
T cd02929 160 RDAGFDIVYVYAA 172 (370)
T ss_pred HHcCCCEEEEccc
Confidence 4689999999643
No 110
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.15 E-value=1.5e+02 Score=29.01 Aligned_cols=44 Identities=9% Similarity=0.000 Sum_probs=30.6
Q ss_pred cHHHHHHHHHcCCcEEEEeCCCC---------ChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 278 PAAIIRKLKDVGLHGLEVYRSDG---------KLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 278 ~~~li~~l~~~GldGIEV~~~~~---------~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
..+.++.++++|++|||+..... +..+. ..+.++++++||-+++
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~-----------------~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQR-----------------LALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHH-----------------HHHHHHHHHcCCceeE
Confidence 35677788899999999975321 22222 2678889999997754
No 111
>PLN02161 beta-amylase
Probab=31.05 E-value=1.6e+02 Score=32.57 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCcEEEE--eCCC---CChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCC
Q 012987 279 AAIIRKLKDVGLHGLEV--YRSD---GKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGG 347 (452)
Q Consensus 279 ~~li~~l~~~GldGIEV--~~~~---~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~ 347 (452)
...+..|+.+|+|||+| |... ..+.+-++ +-. ..+.+++++.||-+-.==-||.-+.
T Consensus 120 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW----sgY--------~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKW----SLY--------EELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred HHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCc----HHH--------HHHHHHHHHcCCeEEEEEEecccCC
Confidence 34577889999999987 3321 11111110 000 1578999999998888888998653
No 112
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=31.03 E-value=91 Score=31.60 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCC
Q 012987 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (452)
Q Consensus 251 ~~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~ 298 (452)
|...++++.||..|+-.+.-|.... ....++.+++.|+|++.+-+.
T Consensus 220 P~~k~i~~~i~~~g~~~~~lH~cG~--~~~~~~~l~~~g~d~~~~~~~ 265 (343)
T PF01208_consen 220 PYLKKIIDAIKEAGKDPVILHICGN--TTPILDDLADLGADVLSVDEK 265 (343)
T ss_dssp HHHHHHHHHHHHHETE-EEEEETTH--G-GGHHHHHTSS-SEEEE-TT
T ss_pred HHHHHHHHHHHHhCCCceEEEECCc--hHHHHHHHHhcCCCEEEEcCC
Confidence 4568999999999985566677542 334788899999999998543
No 113
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=30.88 E-value=1.7e+02 Score=27.01 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=19.4
Q ss_pred HHHHHHHHc-CCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeC
Q 012987 255 VAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR 297 (452)
Q Consensus 255 eaI~~I~~a-GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~ 297 (452)
+.|+.+++. .++++.+|-.........++.+.++|.|+|=+..
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 344444443 3555555533221112234445555666655544
No 114
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=30.70 E-value=40 Score=34.06 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.1
Q ss_pred eEEceeeeCCCCCCCCCHHHHHHHHHH
Q 012987 73 VVFELHSHSNFSDGYLSPSKLVERAHC 99 (452)
Q Consensus 73 ~~vDLH~HT~~SDG~~sp~elv~~A~~ 99 (452)
.++|||+|- ||+++|+.+.+.|++
T Consensus 2 PK~eLH~Hl---~Gsi~~~~l~~l~~~ 25 (305)
T cd00443 2 PKVELHAHL---SGSISPETLLELIKK 25 (305)
T ss_pred CceeEEecC---cCCCCHHHHHHHHHH
Confidence 478999998 899999999999998
No 115
>PLN00197 beta-amylase; Provisional
Probab=30.49 E-value=1.2e+02 Score=33.71 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCcEEEE--eCCC---CChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCC
Q 012987 280 AIIRKLKDVGLHGLEV--YRSD---GKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGG 347 (452)
Q Consensus 280 ~li~~l~~~GldGIEV--~~~~---~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~ 347 (452)
..+..|+.+|+|||+| |... ..+.+-++ +-. ..+.+++++.||-+-.==-||.-+.
T Consensus 131 ~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdW----sgY--------~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 131 ASLQALKSAGVEGIMMDVWWGLVERESPGVYNW----GGY--------NELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred HHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCc----HHH--------HHHHHHHHHcCCeEEEEEEecccCC
Confidence 4577889999999987 3321 11111110 000 1578999999998888888998653
No 116
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=30.16 E-value=44 Score=30.40 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=29.0
Q ss_pred HHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 283 RKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 283 ~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
+.++++|++|||+........... ......+.++++++||-+++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~------------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEK------------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHH------------HHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHcCCCEEEEecCCCcccccc------------hHHHHHHHHHHHHcCCeEEE
Confidence 467889999999987644332100 00122688999999998544
No 117
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=29.91 E-value=90 Score=25.27 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHH
Q 012987 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIET 122 (452)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~ 122 (452)
..+.+....+.|++.+-|-|+++..+..+..+.
T Consensus 7 L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~ 39 (97)
T PF13704_consen 7 LPEWLAHHLALGVDHIYIYDDGSTDGTREILRA 39 (97)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccHHHHHHh
Confidence 467788889999999999999999998777543
No 118
>PLN02801 beta-amylase
Probab=29.88 E-value=2.1e+02 Score=31.50 Aligned_cols=57 Identities=19% Similarity=0.413 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCcEEEE--eCCC---CChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCC
Q 012987 279 AAIIRKLKDVGLHGLEV--YRSD---GKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGG 347 (452)
Q Consensus 279 ~~li~~l~~~GldGIEV--~~~~---~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~ 347 (452)
...+..|+.+|+|||+| |... ..+.+-++ +-. ..+.+++++.||-+-.==-||.-+.
T Consensus 40 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW----sgY--------~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDW----SAY--------RSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCc----HHH--------HHHHHHHHHcCCeEEEEEEecccCC
Confidence 34577889999999987 2321 11111110 000 1578999999998877778998653
No 119
>PRK01060 endonuclease IV; Provisional
Probab=29.57 E-value=1.7e+02 Score=28.56 Aligned_cols=20 Identities=5% Similarity=0.341 Sum_probs=16.5
Q ss_pred cHHHHHHHHHcCCcEEEEeC
Q 012987 278 PAAIIRKLKDVGLHGLEVYR 297 (452)
Q Consensus 278 ~~~li~~l~~~GldGIEV~~ 297 (452)
..+.++.+++.|+||||++-
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~ 33 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFT 33 (281)
T ss_pred HHHHHHHHHHcCCCEEEEEC
Confidence 45678888899999999973
No 120
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=29.47 E-value=1.5e+02 Score=30.56 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=39.3
Q ss_pred ceEEceeeeCCCC---C--CCCCHHHHHHHHHHcCCcEEEEecCCCCCCH-------HHHHHHHHhCCCeEEEE
Q 012987 72 NVVFELHSHSNFS---D--GYLSPSKLVERAHCNGVKVLALTDHDTMSGI-------PEAIETARRFGMKIIPG 133 (452)
Q Consensus 72 ~~~vDLH~HT~~S---D--G~~sp~elv~~A~~~Gl~~iaITDHdt~~g~-------~~~~~~a~~~gi~vI~G 133 (452)
+=++|.|+|.... + ...+|+.....|...|...+. |.-...++ .+..+.+...||..+.+
T Consensus 56 PG~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvv--d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~ 127 (388)
T PRK10657 56 PGFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVV--GLLGTDGITRSMESLLAKARALEEEGISAYMY 127 (388)
T ss_pred ccceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEE--CCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEE
Confidence 3479999998632 2 346888899999999998777 55422222 22234444678888844
No 121
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=29.39 E-value=1.5e+02 Score=30.09 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=31.7
Q ss_pred HHhhcCCCccccCCCCCHHHHHHHHHHcC---CEEEEeCCCCCCC-cHHHHHHHHHcCC-cEEEE
Q 012987 236 RYLYDGGPAYSTGSEPLAEVAVQLIHRTG---GLAVLAHPWALKN-PAAIIRKLKDVGL-HGLEV 295 (452)
Q Consensus 236 ~yL~~g~p~yv~~~~~~~eeaI~~I~~aG---GvaVLAHP~~~~~-~~~li~~l~~~Gl-dGIEV 295 (452)
-||+.|.|.|.|.+ .+.+.++.|.+.. ++.+-++|..... ..+++.++...|+ ..||+
T Consensus 81 iyf~ggt~t~l~~~--~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~l 143 (302)
T TIGR01212 81 AYFQAYTNTYAPVE--VLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVEL 143 (302)
T ss_pred EEEECCCcCCCCHH--HHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEE
Confidence 36777777665432 2345555665543 4667777865421 1234455556688 34554
No 122
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.22 E-value=2e+02 Score=29.00 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCC
Q 012987 279 AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGL 334 (452)
Q Consensus 279 ~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gL 334 (452)
+..++++++.|+||+=+-. -+.++.+ .+...|+++|+
T Consensus 112 e~F~~~~~~~GvdGlivpD--LP~ee~~-----------------~~~~~~~~~gi 148 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPD--LPPEESD-----------------ELLKAAEKHGI 148 (265)
T ss_pred HHHHHHHHHcCCCEEEeCC--CChHHHH-----------------HHHHHHHHcCC
Confidence 5677788889999976654 3344332 46777888774
No 123
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=28.90 E-value=81 Score=32.62 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEe-cC--------------CCCC------CHHHHHHHHHhCCCeEEEEEEEEe
Q 012987 84 SDGYLSPSKLVERAHCNGVKVLALT-DH--------------DTMS------GIPEAIETARRFGMKIIPGVEIST 138 (452)
Q Consensus 84 SDG~~sp~elv~~A~~~Gl~~iaIT-DH--------------dt~~------g~~~~~~~a~~~gi~vI~GiEis~ 138 (452)
.-..+.|++.++.|++.|++.+.+| -| +++. =+.++.++|++.||++ |+=+|.
T Consensus 87 ~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~--G~Y~S~ 160 (346)
T PF01120_consen 87 NPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKF--GLYYSP 160 (346)
T ss_dssp --TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EE--EEEEES
T ss_pred CcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeE--EEEecc
Confidence 3467899999999999999999886 22 2221 1467888999999776 444443
No 124
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=28.90 E-value=2.3e+02 Score=29.46 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=32.2
Q ss_pred HhhcCCCccccCCCCCHHHHHHHHHHc----CCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEE
Q 012987 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT----GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (452)
Q Consensus 237 yL~~g~p~yv~~~~~~~eeaI~~I~~a----GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 295 (452)
|++.|.|..++.. .++++++.|++. --+.+-++|... .++.++.|++.|+.-|.+
T Consensus 61 y~GGGTPs~L~~~--~l~~ll~~i~~~~~~~~eitiE~nP~~l--t~e~l~~lk~~G~nrisi 119 (353)
T PRK05904 61 YLGGGTPNCLNDQ--LLDILLSTIKPYVDNNCEFTIECNPELI--TQSQINLLKKNKVNRISL 119 (353)
T ss_pred EECCCccccCCHH--HHHHHHHHHHHhcCCCCeEEEEeccCcC--CHHHHHHHHHcCCCEEEE
Confidence 4555555443322 134555555543 147788888654 246778888888876655
No 125
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=28.87 E-value=3.1e+02 Score=27.06 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCC--------------C---cHHHHHH---HHHcCCcEEEEeCCCCChhhhhhhhhh
Q 012987 252 LAEVAVQLIHRTGGLAVLAHPWALK--------------N---PAAIIRK---LKDVGLHGLEVYRSDGKLVDVNFLEKI 311 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaVLAHP~~~~--------------~---~~~li~~---l~~~GldGIEV~~~~~~~~~~~~l~~~ 311 (452)
...+.|+.++.++ ++|.||=.... . .++.|++ +.++|.|+|-+-.. +.+
T Consensus 113 ~~~~~i~ai~~a~-i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e-------- 181 (240)
T cd06556 113 WHIETLQMLTAAA-VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVE-------- 181 (240)
T ss_pred HHHHHHHHHHHcC-CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHH--------
Confidence 3456788898887 89999976421 0 1244433 56789999988654 444
Q ss_pred hhHHHHHhhHHHHHHHHHHHcCCeee---eccCCCCC
Q 012987 312 DNFLLLLCLRQITYTDLADTYGLLKL---GGSDYHGR 345 (452)
Q Consensus 312 ~n~~~l~~~~~~~~~~lA~~~gLl~t---gGSDfHg~ 345 (452)
...+++++..+++. +|+++.|-
T Consensus 182 ------------~~~~i~~~~~~P~~~~gag~~~dgq 206 (240)
T cd06556 182 ------------LAKQITEALAIPLAGIGAGSGTDGQ 206 (240)
T ss_pred ------------HHHHHHHhCCCCEEEEecCcCCCce
Confidence 34567777776554 56777763
No 126
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=28.79 E-value=2.4e+02 Score=28.22 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=48.8
Q ss_pred CCEEEEeCCCCCCCc--HHHHHHHHHcCCcEEEEeCCCCCh-hhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeecc
Q 012987 264 GGLAVLAHPWALKNP--AAIIRKLKDVGLHGLEVYRSDGKL-VDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGS 340 (452)
Q Consensus 264 GGvaVLAHP~~~~~~--~~li~~l~~~GldGIEV~~~~~~~-~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGS 340 (452)
|-++|+|+-+..... .++.+...+.|.||+=+..|.+.. .+.. + ..++.++|+.-++.+.-
T Consensus 72 ~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~----------l----~~~f~~va~a~~lPv~i-- 135 (293)
T PRK04147 72 GKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEE----------I----CDYYREIIDSADNPMIV-- 135 (293)
T ss_pred CCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHH----------H----HHHHHHHHHhCCCCEEE--
Confidence 458999998754322 245566678999999999886432 2211 1 12677888876654443
Q ss_pred CCCCCCCCCCccCCCccCChhHHHHHhc
Q 012987 341 DYHGRGGHGESELGSVKLPVLVLNDFLK 368 (452)
Q Consensus 341 DfHg~~~~~~~~lG~~~~p~~~~~~~~~ 368 (452)
|+-|. ...+.++.+++.+|.+
T Consensus 136 -Yn~P~------~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 136 -YNIPA------LTGVNLSLDQFNELFT 156 (293)
T ss_pred -EeCch------hhccCCCHHHHHHHhc
Confidence 33321 2234566777777654
No 127
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=28.49 E-value=3.8e+02 Score=26.80 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHH----H-cCCEEEEeCCCCCCCcH---HHHHHHHHcCCcEEEEeCCCCCh-hhhhhhhhhhhHHHHHhh
Q 012987 250 EPLAEVAVQLIH----R-TGGLAVLAHPWALKNPA---AIIRKLKDVGLHGLEVYRSDGKL-VDVNFLEKIDNFLLLLCL 320 (452)
Q Consensus 250 ~~~~eeaI~~I~----~-aGGvaVLAHP~~~~~~~---~li~~l~~~GldGIEV~~~~~~~-~~~~~l~~~~n~~~l~~~ 320 (452)
.++.+|=.++++ . .|.++|++|-.. +.. ++.+...+.|.||+-+..|++.. .+.. +
T Consensus 49 ~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~--~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~----------i--- 113 (289)
T cd00951 49 SLTPDEYAQVVRAAVEETAGRVPVLAGAGY--GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEG----------L--- 113 (289)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHH----------H---
Confidence 356655444432 2 466999999864 333 44556678899999999886532 2211 1
Q ss_pred HHHHHHHHHHHcCCeeeeccCCCCCCCCCCccCCCccCChhHHHHHhc
Q 012987 321 RQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 368 (452)
Q Consensus 321 ~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~~~p~~~~~~~~~ 368 (452)
..++.++|+.-++.+.- |+-+ .+.++.+.+.++.+
T Consensus 114 -~~~f~~v~~~~~~pi~l---Yn~~---------g~~l~~~~l~~L~~ 148 (289)
T cd00951 114 -YAHVEAVCKSTDLGVIV---YNRA---------NAVLTADSLARLAE 148 (289)
T ss_pred -HHHHHHHHhcCCCCEEE---EeCC---------CCCCCHHHHHHHHh
Confidence 12677888876665544 3311 13467777777764
No 128
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=28.23 E-value=2.2e+02 Score=29.46 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=32.6
Q ss_pred HhhcCCCccccCCCCCHHHHHHHHHHcCC------EEEEeCCCCCCCcHHHHHHHHHcCCcEEEE
Q 012987 237 YLYDGGPAYSTGSEPLAEVAVQLIHRTGG------LAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (452)
Q Consensus 237 yL~~g~p~yv~~~~~~~eeaI~~I~~aGG------vaVLAHP~~~~~~~~li~~l~~~GldGIEV 295 (452)
|++.|.|...+. ..++++++.|+..-+ +.+-++|... .++.++.|+++|+.-|.+
T Consensus 64 ~~GGGTPs~l~~--~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i--~~e~l~~l~~~G~~rvsl 124 (375)
T PRK05628 64 FVGGGTPSLLGA--EGLARVLDAVRDTFGLAPGAEVTTEANPEST--SPEFFAALRAAGFTRVSL 124 (375)
T ss_pred EeCCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC--CHHHHHHHHHcCCCEEEE
Confidence 455555543321 234666777766433 3556788643 346777888888876666
No 129
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=28.19 E-value=2.2e+02 Score=28.95 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHcC-CEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCC
Q 012987 251 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (452)
Q Consensus 251 ~~~eeaI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~ 298 (452)
|...++++.|+..| |++++=|.+. ...+++.+++.|.+++-+-+.
T Consensus 215 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~ 260 (335)
T cd00717 215 PYLKRIIEEVKKRLPGVPVILFAKG---AGGLLEDLAQLGADVVGLDWR 260 (335)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---CHHHHHHHHhcCCCEEEeCCC
Confidence 56789999999997 7778777653 236888999999999876554
No 130
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=27.96 E-value=2.7e+02 Score=26.97 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCC-cHHHHHHHHHcC
Q 012987 253 AEVAVQLIHRTGGLAVLAHPWALKN-PAAIIRKLKDVG 289 (452)
Q Consensus 253 ~eeaI~~I~~aGGvaVLAHP~~~~~-~~~li~~l~~~G 289 (452)
++..++.+-.+|.-.|.-|...... ....++.+.+.|
T Consensus 77 p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G 114 (228)
T PTZ00170 77 PEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAG 114 (228)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC
Confidence 4445555555555555555443222 233444444444
No 131
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=27.91 E-value=2.7e+02 Score=27.57 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCCCCChh
Q 012987 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLV 303 (452)
Q Consensus 251 ~~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~ 303 (452)
...++-++...++|.--++.|........+++..+.+.|++-+=+++|..+.+
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~e 154 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDE 154 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHH
Confidence 35588899999999888888876554455677778889999999999877665
No 132
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.78 E-value=2.5e+02 Score=27.16 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCCCC
Q 012987 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG 300 (452)
Q Consensus 253 ~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~ 300 (452)
..++++.+.+.+=++|+-++.. ..-..+.+.+.+.|++.||+-....
T Consensus 5 ~~~~~~~l~~~~~iaV~r~~~~-~~a~~i~~al~~~Gi~~iEitl~~~ 51 (212)
T PRK05718 5 KTSIEEILRAGPVVPVIVINKL-EDAVPLAKALVAGGLPVLEVTLRTP 51 (212)
T ss_pred HHHHHHHHHHCCEEEEEEcCCH-HHHHHHHHHHHHcCCCEEEEecCCc
Confidence 4567788889999999976631 1123567778889999999985443
No 133
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=27.62 E-value=3.6e+02 Score=26.13 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHH
Q 012987 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADT 331 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~ 331 (452)
+++.-|+....+|.-.|.-|......+...+..+++.|+..-=+.+|..+.+ .+..+...
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~--------------------~i~~~l~~ 128 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLH--------------------HLEYIMDK 128 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHH--------------------HHHHHHHh
Confidence 5788888889999999999987666666788888899998877888876655 35566778
Q ss_pred cCCeeeeccCC
Q 012987 332 YGLLKLGGSDY 342 (452)
Q Consensus 332 ~gLl~tgGSDf 342 (452)
-+++...+.+-
T Consensus 129 ~D~vlvMtV~P 139 (220)
T PRK08883 129 VDLILLMSVNP 139 (220)
T ss_pred CCeEEEEEecC
Confidence 88777777653
No 134
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=27.57 E-value=1.6e+02 Score=30.44 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=27.8
Q ss_pred HHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhCCCeEEEEEEE
Q 012987 95 ERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEI 136 (452)
Q Consensus 95 ~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi~vI~GiEi 136 (452)
..+.+.|+..+. ||.+.. ....+.+++.+.|++++.|...
T Consensus 97 ~e~l~~GvTtv~--d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~ 138 (401)
T TIGR02967 97 DELLRNGTTTAL--VFATVHPESVDALFEAALKRGMRMIAGKVL 138 (401)
T ss_pred HHHHhCCCcEEE--eccccCHHHHHHHHHHHHHCCCeEEEeeee
Confidence 467888988866 765443 2345567778889998887654
No 135
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=27.40 E-value=7e+02 Score=25.71 Aligned_cols=166 Identities=17% Similarity=0.144 Sum_probs=92.9
Q ss_pred CceEEceeeeCCCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCCC----HHHHHHHH-HhCCCeEEEEEEEEeEecCCC
Q 012987 71 NNVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMSG----IPEAIETA-RRFGMKIIPGVEISTIFCQRG 144 (452)
Q Consensus 71 ~~~~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g----~~~~~~~a-~~~gi~vI~GiEis~~~~~~~ 144 (452)
+...+|.++|--+- ...-..+.+......-.++.|++.||-.-.+ ...+..+. .+.|
T Consensus 78 ~~~~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~----------------- 140 (325)
T cd01306 78 GVLRADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYG----------------- 140 (325)
T ss_pred CcchhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcC-----------------
Confidence 56788988888765 4455677777778888899999999977654 22232222 1111
Q ss_pred CCCCCcEEEEEEecCCCCCchHHHHHHHHHHHHhHH----HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHH
Q 012987 145 SESEEPVHILAYYSSCGPSKYEELENFLANIRDGRF----LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA 220 (452)
Q Consensus 145 ~~~g~~vHILgy~~d~~~~~~~~L~~~L~~ir~~R~----~R~~~~v~~L~~~Gi~i~~e~v~~~a~~~~~~gr~hia~a 220 (452)
.+ .+++.+++...+..+. +..+.+++.-.+.|+++.. ... .+..++ +.
T Consensus 141 -------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~iv~~A~~~gl~vas-----H~d----~~~~~v-~~ 192 (325)
T cd01306 141 -------------LS-----DEEVEEAILERKARAAAYAPANRSELAALARARGIPLAS-----HDD----DTPEHV-AE 192 (325)
T ss_pred -------------CC-----HHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHCCCcEEE-----ecC----CChHHH-HH
Confidence 11 2566666665554443 2334555555667776520 000 001111 11
Q ss_pred HHHcCccccHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCC----CcHHHHHHHHHcCCcEEEEe
Q 012987 221 MVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK----NPAAIIRKLKDVGLHGLEVY 296 (452)
Q Consensus 221 Lv~~G~v~~~~~af~~yL~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~~----~~~~li~~l~~~GldGIEV~ 296 (452)
.++.|... .+.+...++++..++.|-..+...|.... .....+.++...|+. -++
T Consensus 193 a~~~Gv~~-------------------~E~p~t~e~a~~a~~~G~~vv~gapn~lrg~s~~g~~~~~~ll~~Gv~--~al 251 (325)
T cd01306 193 AHELGVVI-------------------SEFPTTLEAAKAARELGLQTLMGAPNVVRGGSHSGNVSARELAAHGLL--DIL 251 (325)
T ss_pred HHHCCCee-------------------ccCCCCHHHHHHHHHCCCEEEecCcccccCccccccHhHHHHHHCCCe--EEE
Confidence 22222221 13456788899999999988877774221 111234567778873 256
Q ss_pred CCCCCh
Q 012987 297 RSDGKL 302 (452)
Q Consensus 297 ~~~~~~ 302 (452)
.+++.+
T Consensus 252 ~SD~~p 257 (325)
T cd01306 252 SSDYVP 257 (325)
T ss_pred EcCCCc
Confidence 665543
No 136
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.35 E-value=1.9e+02 Score=25.84 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhC---CCeEEEE
Q 012987 87 YLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRF---GMKIIPG 133 (452)
Q Consensus 87 ~~sp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~---gi~vI~G 133 (452)
..+++++++.|.+.+.++|+++=..+.. ...++.+..++. +++++.|
T Consensus 40 ~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vG 91 (137)
T PRK02261 40 MTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVG 91 (137)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 4689999999999999999998766533 233444444444 3444444
No 137
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=27.29 E-value=4.5e+02 Score=26.50 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHH----H-cCCEEEEeCCCCCCCcH---HHHHHHHHcCCcEEEEeCCCCC-hhhhhhhhhhhhHHHHHhh
Q 012987 250 EPLAEVAVQLIH----R-TGGLAVLAHPWALKNPA---AIIRKLKDVGLHGLEVYRSDGK-LVDVNFLEKIDNFLLLLCL 320 (452)
Q Consensus 250 ~~~~eeaI~~I~----~-aGGvaVLAHP~~~~~~~---~li~~l~~~GldGIEV~~~~~~-~~~~~~l~~~~n~~~l~~~ 320 (452)
.++.+|=.++++ . .|.++|++|-+. +.. ++.+...+.|.||+-+..|++. ..+.. +-
T Consensus 56 ~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~--~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~----i~-------- 121 (303)
T PRK03620 56 SLTPDEYSQVVRAAVETTAGRVPVIAGAGG--GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEG----LA-------- 121 (303)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHH----HH--------
Confidence 366665444443 2 455899998863 333 3455567789999999988643 22211 11
Q ss_pred HHHHHHHHHHHcCCeeeeccCCCCCCCCCCccCCCccCChhHHHHHh
Q 012987 321 RQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFL 367 (452)
Q Consensus 321 ~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~~~p~~~~~~~~ 367 (452)
.++.++|+.-++.+.- ||.+ .+.++.+++.++.
T Consensus 122 --~~f~~va~~~~lpi~l---Yn~~---------g~~l~~~~l~~L~ 154 (303)
T PRK03620 122 --AHVEAVCKSTDLGVIV---YNRD---------NAVLTADTLARLA 154 (303)
T ss_pred --HHHHHHHHhCCCCEEE---EcCC---------CCCCCHHHHHHHH
Confidence 2788888887776554 4421 1456777777776
No 138
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.00 E-value=1.3e+02 Score=26.09 Aligned_cols=42 Identities=31% Similarity=0.404 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCC--CCCHHHHHHHHHhC
Q 012987 85 DGYLSPSKLVERAHCNGVKVLALTDHDT--MSGIPEAIETARRF 126 (452)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt--~~g~~~~~~~a~~~ 126 (452)
-...+++++++.|.+.+.++|+|+=-+. .....++.+..++.
T Consensus 34 G~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 34 GLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLREL 77 (122)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhc
Confidence 3458999999999999999999964332 22334444444444
No 139
>PRK08309 short chain dehydrogenase; Provisional
Probab=26.94 E-value=37 Score=31.74 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.9
Q ss_pred hhccChhhhhhhhhHhHhhhccceec
Q 012987 424 SLWLTNEERQSAEFEAIKLKLSHVSI 449 (452)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (452)
|.|||++|.-.-=.++|+.+.+...+
T Consensus 146 ~rwlt~~ei~~gv~~~~~~~~~~~~~ 171 (177)
T PRK08309 146 SRWLTHEEISDGVIKAIESDADEHVV 171 (177)
T ss_pred cccCchHHHHHHHHHHHhcCCCeEEE
Confidence 57999999999999999999887654
No 140
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.59 E-value=1.3e+02 Score=31.81 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=30.5
Q ss_pred cHHHHHHHHHcCCcEEEEeC----CCCChh-hhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 278 PAAIIRKLKDVGLHGLEVYR----SDGKLV-DVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 278 ~~~li~~l~~~GldGIEV~~----~~~~~~-~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
+.+.+..++++|.+|||++. |..... +.+ . ....+.+.++++||-+++
T Consensus 34 ~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~--------~-----~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 34 PVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERD--------Q-----IVRRFKKALDETGLKVPM 86 (382)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhHHH--------H-----HHHHHHHHHHHhCCeEEE
Confidence 35677888999999999984 322221 110 0 012577889999997554
No 141
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.33 E-value=29 Score=38.57 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=15.7
Q ss_pred HHcCCcEEEEecCCCCCCHHHHHHHH
Q 012987 98 HCNGVKVLALTDHDTMSGIPEAIETA 123 (452)
Q Consensus 98 ~~~Gl~~iaITDHdt~~g~~~~~~~a 123 (452)
.+.|+.+..+|--++..-.+..+.++
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~a 264 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLA 264 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHH
Confidence 67788888887655544444444443
No 142
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=26.28 E-value=2.3e+02 Score=29.45 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=36.8
Q ss_pred HhhcCCCccccCCCCCHHHHHHHHHHc--CCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEE
Q 012987 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT--GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (452)
Q Consensus 237 yL~~g~p~yv~~~~~~~eeaI~~I~~a--GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 295 (452)
|++.|.|.+.+.. .++++++.|+.. ..+.+-++|... ..+.++.|++.|++-|++
T Consensus 63 y~GGGTPs~l~~~--~l~~ll~~i~~~~~~eit~E~~P~~~--~~~~l~~l~~~G~nrisl 119 (370)
T PRK06294 63 FFGGGTPSLVPPA--LIQDILKTLEAPHATEITLEANPENL--SESYIRALALTGINRISI 119 (370)
T ss_pred EECCCccccCCHH--HHHHHHHHHHhCCCCeEEEEeCCCCC--CHHHHHHHHHCCCCEEEE
Confidence 5566666554321 346677777653 368888999764 356788899999987766
No 143
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=26.14 E-value=29 Score=36.96 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=9.3
Q ss_pred CCccCCCchhhHHHh
Q 012987 408 RNYPLNCGKGLVDEC 422 (452)
Q Consensus 408 ~~~~~~~~~~~~~~~ 422 (452)
.-..++||..+++.-
T Consensus 360 ~V~eLn~Gl~f~d~v 374 (396)
T PF09692_consen 360 TVCELNCGLKFFDSV 374 (396)
T ss_pred EEEEcCCCcEEehhh
Confidence 345677777666654
No 144
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.09 E-value=3e+02 Score=27.14 Aligned_cols=37 Identities=32% Similarity=0.396 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEE
Q 012987 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL 293 (452)
Q Consensus 254 eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGI 293 (452)
+++.+.+++. |+.+..+++.. ..+.++.|+++|++.+
T Consensus 101 ~~i~~~~~~~-~i~~~~~~g~~--~~e~l~~Lk~aG~~~v 137 (296)
T TIGR00433 101 EAMVQIVEEM-GLKTCATLGLL--DPEQAKRLKDAGLDYY 137 (296)
T ss_pred HHHHHHHHhC-CCeEEecCCCC--CHHHHHHHHHcCCCEE
Confidence 3444444444 56667777532 3567788888888763
No 145
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.92 E-value=3.3e+02 Score=26.59 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHcCCEEEEeC--CCC-CCCcHHHHHHHHHcCCcEEEEeCCCCChh
Q 012987 251 PLAEVAVQLIHRTGGLAVLAH--PWA-LKNPAAIIRKLKDVGLHGLEVYRSDGKLV 303 (452)
Q Consensus 251 ~~~eeaI~~I~~aGGvaVLAH--P~~-~~~~~~li~~l~~~GldGIEV~~~~~~~~ 303 (452)
..+++.++....+|.-.|+-| |.. ......++..+.+.|++.+=+.+|..+.+
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e 143 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDL 143 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 478888999999998888888 332 23445678888899999999999876665
No 146
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.76 E-value=1.5e+02 Score=29.09 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 279 AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 279 ~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
.+.++.+++.|++|||+.-+..... ...+ +.. ..+...+.+.++++||-+++
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~-~~~~-~~~------~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDR-LSRL-DWS------REQRLALVNAIIETGVRIPS 70 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccch-hhcc-CCC------HHHHHHHHHHHHHcCCCcee
Confidence 4566677888999999964332100 0000 000 00112577888899997754
No 147
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=25.60 E-value=1.3e+02 Score=28.43 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=40.1
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC---HHHHHHHHHhCCCeEEEEEEEE
Q 012987 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG---IPEAIETARRFGMKIIPGVEIS 137 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g---~~~~~~~a~~~gi~vI~GiEis 137 (452)
.+.+|+|+|=. ..++...++.+.+.|.+.+.+ |-. .| ...+.+.+++.|+++..-++.+
T Consensus 55 ~i~~D~k~~di----~~~~~~~~~~~~~~gad~vtv--h~e-~g~~~l~~~i~~~~~~g~~~~v~~~~~ 116 (215)
T PRK13813 55 PVIADLKVADI----PNTNRLICEAVFEAGAWGIIV--HGF-TGRDSLKAVVEAAAESGGKVFVVVEMS 116 (215)
T ss_pred CEEEEeecccc----HHHHHHHHHHHHhCCCCEEEE--cCc-CCHHHHHHHHHHHHhcCCeEEEEEeCC
Confidence 67889999832 235666778899999887666 443 32 3456677788888776666554
No 148
>PF07643 DUF1598: Protein of unknown function (DUF1598); InterPro: IPR011487 This is a family of Rhodopirellula baltica hypothetical proteins of about 500 amino acids in length.
Probab=25.49 E-value=87 Score=26.22 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHcCcc
Q 012987 212 PGRLHVARAMVEAGHV 227 (452)
Q Consensus 212 ~gr~hia~aLv~~G~v 227 (452)
+...|+|+.||++.|-
T Consensus 51 p~~sh~ArvLVeADyr 66 (84)
T PF07643_consen 51 PADSHFARVLVEADYR 66 (84)
T ss_pred CCccHHHHHHHHhhhH
Confidence 5578999999997553
No 149
>PLN02803 beta-amylase
Probab=25.13 E-value=1.7e+02 Score=32.39 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCcEEEE--eCCCC---ChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCCCCCccCC
Q 012987 280 AIIRKLKDVGLHGLEV--YRSDG---KLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELG 354 (452)
Q Consensus 280 ~li~~l~~~GldGIEV--~~~~~---~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG 354 (452)
..+..|+.+|+|||+| |...- .+.+-++ +-. ..+.+++++.||-+-.==-||.-+. .+|
T Consensus 111 ~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW----sgY--------~~l~~mvr~~GLKlq~vmSFHqCGG----NVG 174 (548)
T PLN02803 111 ASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNW----EGY--------AELVQMVQKHGLKLQVVMSFHQCGG----NVG 174 (548)
T ss_pred HHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCc----HHH--------HHHHHHHHHcCCeEEEEEEecccCC----CCC
Confidence 4577889999999987 33211 1111110 000 1578999999998888888998654 355
Q ss_pred C-c--cCChhHHHHHhccccccchhHHHHHH--hhhcCCCCCCCccchhh-cccccccCCCccCCCchhhHHH
Q 012987 355 S-V--KLPVLVLNDFLKVARPIWCGAIKEIL--ESYADEPSDSNLSHITR-YGRGKMLKRNYPLNCGKGLVDE 421 (452)
Q Consensus 355 ~-~--~~p~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 421 (452)
. | ++|. |...+-+.. --|+++.-.-|-+-|.- ......++|-+|+.|=.|++.-
T Consensus 175 D~~~IpLP~-------------WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~S 234 (548)
T PLN02803 175 DSCSIPLPP-------------WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRS 234 (548)
T ss_pred CcccccCCH-------------HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHH
Confidence 3 3 4555 433222111 11333322222222211 1133466777777777777643
No 150
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=25.07 E-value=2e+02 Score=27.68 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCC----HHHHHHHHHhCCCeEE
Q 012987 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSG----IPEAIETARRFGMKII 131 (452)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g----~~~~~~~a~~~gi~vI 131 (452)
++..+++++++.+++.|++.+-|..+..... ..++.+..+..|+.+.
T Consensus 12 ~~~~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 62 (274)
T COG1082 12 FGELPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEIT 62 (274)
T ss_pred CCCCCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEE
Confidence 3789999999999999999999998544433 4667777777887664
No 151
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.00 E-value=1.1e+02 Score=27.42 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHcCCcEEEE--ecCCCCC----------------CHHHHHHHHHhCCCeEEEEEEEE
Q 012987 89 SPSKLVERAHCNGVKVLAL--TDHDTMS----------------GIPEAIETARRFGMKIIPGVEIS 137 (452)
Q Consensus 89 sp~elv~~A~~~Gl~~iaI--TDHdt~~----------------g~~~~~~~a~~~gi~vI~GiEis 137 (452)
.|+++++..++.+++.+.| -+|.-++ -+.++.++|.+.||+++.=+-++
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4789999999999999999 5554322 24578889999999998777666
No 152
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=24.86 E-value=2.6e+02 Score=28.66 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHcC-CEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCC
Q 012987 251 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (452)
Q Consensus 251 ~~~eeaI~~I~~aG-GvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~ 298 (452)
|...++++.|+..| +++|+-|.+. ....++.+++.|++++-+-+.
T Consensus 224 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~is~d~~ 269 (346)
T PRK00115 224 PYMKRIVAELKREHPDVPVILFGKG---AGELLEAMAETGADVVGLDWT 269 (346)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---cHHHHHHHHhcCCCEEeeCCC
Confidence 56789999999998 7788866653 345678889999999887654
No 153
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=24.86 E-value=96 Score=25.67 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=25.9
Q ss_pred HHHHHHHcCccccHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHH
Q 012987 217 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 262 (452)
Q Consensus 217 ia~aLv~~G~v~~~~~af~~yL~~g~p~yv~~~~~~~eeaI~~I~~ 262 (452)
+.+||.++||-.--+ .-.||-.|.|+|.+. -..|-.+|++
T Consensus 24 Vy~AL~EKGYnPinQ--ivGYllSGDPaYIts----h~nAR~lIr~ 63 (79)
T PF06135_consen 24 VYAALEEKGYNPINQ--IVGYLLSGDPAYITS----HNNARNLIRK 63 (79)
T ss_pred HHHHHHHcCCChHHH--HHhheecCCCccccC----cccHHHHHHH
Confidence 567788888865322 347899999999963 3344444444
No 154
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=24.81 E-value=3e+02 Score=27.61 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=53.4
Q ss_pred CCHHHHHHHHH-----HcCCEEEEeCCCCCCC--cHHHHHHHHHcCCcEEEEeCCCCCh-hhhhhhhhhhhHHHHHhhHH
Q 012987 251 PLAEVAVQLIH-----RTGGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDGKL-VDVNFLEKIDNFLLLLCLRQ 322 (452)
Q Consensus 251 ~~~eeaI~~I~-----~aGGvaVLAHP~~~~~--~~~li~~l~~~GldGIEV~~~~~~~-~~~~~l~~~~n~~~l~~~~~ 322 (452)
++.+|-.++++ ..|-++|++|-+.... ..++.+...+.|.|||=+..|++.. .+.+ + -
T Consensus 51 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~----------i----~ 116 (290)
T TIGR00683 51 LSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPE----------I----K 116 (290)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHH----------H----H
Confidence 55555444442 2355899999875432 2345566678899999998885433 2211 0 1
Q ss_pred HHHHHHHHHc-CCeeeeccCCCCCCCCCCccCCCccCChhHHHHHhc
Q 012987 323 ITYTDLADTY-GLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 368 (452)
Q Consensus 323 ~~~~~lA~~~-gLl~tgGSDfHg~~~~~~~~lG~~~~p~~~~~~~~~ 368 (452)
.++.++|+.. ++.+.- ||-|. ...+.++.+.+.++.+
T Consensus 117 ~yf~~v~~~~~~lpv~l---Yn~P~------~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 117 HYYDTIIAETGGLNMIV---YSIPF------LTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHHHHHhhCCCCCEEE---EeCcc------ccccCcCHHHHHHHhc
Confidence 2677887754 444432 44432 1134566666666653
No 155
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.79 E-value=8e+02 Score=25.50 Aligned_cols=70 Identities=10% Similarity=0.013 Sum_probs=38.9
Q ss_pred HHHHHHc---CCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcC
Q 012987 257 VQLIHRT---GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYG 333 (452)
Q Consensus 257 I~~I~~a---GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~g 333 (452)
++...+. |+-.+++|-.... ++.++.+++.|+.- ++.|..... +.+. . .-.....+.|
T Consensus 220 v~~l~~~g~L~~~~~~~H~~~l~--~~~~~~l~~~g~~v--~~~P~sn~~-------lg~g-------~-~p~~~~~~~G 280 (381)
T cd01312 220 IDFLDMLGGLGTRVSFVHCVYAN--LEEAEILASRGASI--ALCPRSNRL-------LNGG-------K-LDVSELKKAG 280 (381)
T ss_pred HHHHHHcCCCCCCcEEEECCcCC--HHHHHHHHHcCCeE--EECcchhhh-------hcCC-------C-cCHHHHHHCC
Confidence 3444444 4568899975543 45677888887643 333321110 0000 0 1123356779
Q ss_pred CeeeeccCCCCC
Q 012987 334 LLKLGGSDYHGR 345 (452)
Q Consensus 334 Ll~tgGSDfHg~ 345 (452)
+.++-|||.+.+
T Consensus 281 v~v~lGtD~~~~ 292 (381)
T cd01312 281 IPVSLGTDGLSS 292 (381)
T ss_pred CcEEEeCCCCcc
Confidence 999999997654
No 156
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=24.63 E-value=2.6e+02 Score=28.43 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHc-CCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCC
Q 012987 251 PLAEVAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 298 (452)
Q Consensus 251 ~~~eeaI~~I~~a-GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~ 298 (452)
|...++++.|++. |+++|+=|.+. ...+++.+++.|++++-+-+.
T Consensus 218 p~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~ 263 (338)
T TIGR01464 218 PYLKKIIEEVKARLPNVPVILFAKG---AGHLLEELAETGADVVGLDWT 263 (338)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCC---cHHHHHHHHhcCCCEEEeCCC
Confidence 5678999999998 78777766653 345788899999999876553
No 157
>PLN03059 beta-galactosidase; Provisional
Probab=24.36 E-value=1.1e+02 Score=35.85 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=37.8
Q ss_pred eCCCCCC--CcHHHHHHHHHcCCcEEEEeCC--CCChhhhhh-hhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 270 AHPWALK--NPAAIIRKLKDVGLHGLEVYRS--DGKLVDVNF-LEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 270 AHP~~~~--~~~~li~~l~~~GldGIEV~~~--~~~~~~~~~-l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
-|++|.. .....|..++++|++.||.|=+ .|.+.+-++ .++ +. -| .++.++|++.||.++-
T Consensus 51 iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G--~~-DL-----~~Fl~la~e~GLyvil 116 (840)
T PLN03059 51 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFED--RY-DL-----VKFIKVVQAAGLYVHL 116 (840)
T ss_pred cccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccc--hH-HH-----HHHHHHHHHcCCEEEe
Confidence 3776643 2346778899999999998744 344332211 011 11 11 2789999999998764
No 158
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.31 E-value=1.3e+02 Score=25.99 Aligned_cols=41 Identities=34% Similarity=0.522 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEE-EEE
Q 012987 91 SKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII-PGV 134 (452)
Q Consensus 91 ~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI-~Gi 134 (452)
.++++.+.+.|.+.+-+.-. .--+++.+.+++.|+.++ |++
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS-
T ss_pred HHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCCc
Confidence 46899999999999999766 445778888999999988 543
No 159
>PRK05473 hypothetical protein; Provisional
Probab=24.26 E-value=1e+02 Score=25.89 Aligned_cols=41 Identities=32% Similarity=0.399 Sum_probs=26.5
Q ss_pred HHHHHHHHcCccccHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHH
Q 012987 216 HVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 262 (452)
Q Consensus 216 hia~aLv~~G~v~~~~~af~~yL~~g~p~yv~~~~~~~eeaI~~I~~ 262 (452)
.+..||.++||-.--+ .-.||-.|.|+|.+.. .+|-.+|++
T Consensus 26 ~Vy~AL~EKGYNPinQ--iVGYllSGDPaYItsh----~nAR~lIrk 66 (86)
T PRK05473 26 TVYDALEEKGYNPINQ--IVGYLLSGDPAYIPRH----NDARNLIRK 66 (86)
T ss_pred HHHHHHHHcCCChHHH--HHhhhccCCCCccCCc----ccHHHHHHH
Confidence 3567888888865322 3478999999999743 344444443
No 160
>PRK09228 guanine deaminase; Provisional
Probab=24.18 E-value=2e+02 Score=30.52 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=26.7
Q ss_pred HHHcCCcEEEEecCCCCC--CHHHHHHHHHhCCCeEEEEEEEE
Q 012987 97 AHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEIS 137 (452)
Q Consensus 97 A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi~vI~GiEis 137 (452)
+.+.|...++ ||.+.. ....+.+++++.|++.+.|.++.
T Consensus 124 ~l~~G~Ttv~--d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~ 164 (433)
T PRK09228 124 LLRNGTTTAL--VFGTVHPQSVDALFEAAEARNMRMIAGKVLM 164 (433)
T ss_pred HHhCCceEEE--eccccCHHHHHHHHHHHHHcCCeEEeeeeee
Confidence 4667776664 776543 34556667778899999887764
No 161
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=24.12 E-value=2e+02 Score=34.46 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccC--CCCC
Q 012987 280 AIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSD--YHGR 345 (452)
Q Consensus 280 ~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSD--fHg~ 345 (452)
..+..++++|+..|=+.|..+++ .+.++|.++||++..-.| .|+.
T Consensus 359 ~dl~lmK~~g~NavR~sHyP~~~---------------------~fydlcDe~GllV~dE~~~e~~g~ 405 (1021)
T PRK10340 359 KDIQLMKQHNINSVRTAHYPNDP---------------------RFYELCDIYGLFVMAETDVESHGF 405 (1021)
T ss_pred HHHHHHHHCCCCEEEecCCCCCH---------------------HHHHHHHHCCCEEEECCcccccCc
Confidence 45667889999999987643322 578999999999998877 4653
No 162
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.04 E-value=3.1e+02 Score=26.73 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 012987 85 DGYLSPSKLVERAHCNGVKVLALTDHDT 112 (452)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt 112 (452)
....++.++++.+.+.|++.+.+||++.
T Consensus 150 ~~~~~~~~~~~~~~~~g~~~ii~~~i~~ 177 (253)
T PRK02083 150 PTGLDAVEWAKEVEELGAGEILLTSMDR 177 (253)
T ss_pred ecCCCHHHHHHHHHHcCCCEEEEcCCcC
Confidence 3456889999999999999999999874
No 163
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=23.70 E-value=1.6e+02 Score=30.29 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcC-CEEEEeC-------CC-CCC-CcHHHHHHHHHcCCcEE-----EEeCC--------C-CChhhhhhh
Q 012987 253 AEVAVQLIHRTG-GLAVLAH-------PW-ALK-NPAAIIRKLKDVGLHGL-----EVYRS--------D-GKLVDVNFL 308 (452)
Q Consensus 253 ~eeaI~~I~~aG-GvaVLAH-------P~-~~~-~~~~li~~l~~~GldGI-----EV~~~--------~-~~~~~~~~l 308 (452)
+.++++.|++.+ ++.+.+- +. ... ...+.+..|+++|++.+ |.+++ . ++.++
T Consensus 105 ~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~---- 180 (343)
T TIGR03551 105 YLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAE---- 180 (343)
T ss_pred HHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHH----
Confidence 368888888875 5665542 10 111 23578899999999844 55442 1 12211
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHHcCCeeeec
Q 012987 309 EKIDNFLLLLCLRQITYTDLADTYGLLKLGG 339 (452)
Q Consensus 309 ~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgG 339 (452)
.....+.|++.|+.+++|
T Consensus 181 -------------~~~~i~~a~~~Gi~v~s~ 198 (343)
T TIGR03551 181 -------------WIEIIKTAHKLGIPTTAT 198 (343)
T ss_pred -------------HHHHHHHHHHcCCcccce
Confidence 125678899999876554
No 164
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=23.67 E-value=2.7e+02 Score=27.93 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHH
Q 012987 250 EPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLA 329 (452)
Q Consensus 250 ~~~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA 329 (452)
.|...++++.|+..|+ .+.-|... +....++.+.+.|+|++-+-+.. + +.++.
T Consensus 207 ~p~~k~i~~~i~~~g~-~~~lH~cG--~~~~~~~~l~~~~~d~~~~d~~~-d-----------------------l~~~~ 259 (330)
T cd03465 207 LPYLKKVFDAIKALGG-PVIHHNCG--DTAPILELMADLGADVFSIDVTV-D-----------------------LAEAK 259 (330)
T ss_pred hHHHHHHHHHHHHcCC-ceEEEECC--CchhHHHHHHHhCCCeEeecccC-C-----------------------HHHHH
Confidence 3566899999999854 55558764 33357889999999987654432 1 22334
Q ss_pred HHcC--CeeeeccCCC
Q 012987 330 DTYG--LLKLGGSDYH 343 (452)
Q Consensus 330 ~~~g--Ll~tgGSDfH 343 (452)
+.+| ..+.||-|-+
T Consensus 260 ~~~g~~~~i~G~id~~ 275 (330)
T cd03465 260 KKVGDKACLMGNLDPI 275 (330)
T ss_pred HHhCCceEEEeCcChH
Confidence 4454 7888888776
No 165
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.66 E-value=1.8e+02 Score=28.95 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCcEEEEeC
Q 012987 279 AAIIRKLKDVGLHGLEVYR 297 (452)
Q Consensus 279 ~~li~~l~~~GldGIEV~~ 297 (452)
+..+++++++|+||+=+..
T Consensus 105 e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 6778888899999987765
No 166
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.54 E-value=1.8e+02 Score=26.73 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCC--CCCHHHHHHHHHhCCCeE
Q 012987 87 YLSPSKLVERAHCNGVKVLALTDHDT--MSGIPEAIETARRFGMKI 130 (452)
Q Consensus 87 ~~sp~elv~~A~~~Gl~~iaITDHdt--~~g~~~~~~~a~~~gi~v 130 (452)
..||+|++++|.+...++|+++=.+- ..-++.+.+++++.|+.-
T Consensus 49 ~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~ 94 (143)
T COG2185 49 FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVED 94 (143)
T ss_pred cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcc
Confidence 46999999999999999999985542 122456677777776543
No 167
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=23.42 E-value=3.2e+02 Score=28.77 Aligned_cols=55 Identities=9% Similarity=0.251 Sum_probs=31.4
Q ss_pred HhhcCCCccccCCCCCHHHHHHHHHHc------CCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEE
Q 012987 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT------GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (452)
Q Consensus 237 yL~~g~p~yv~~~~~~~eeaI~~I~~a------GGvaVLAHP~~~~~~~~li~~l~~~GldGIEV 295 (452)
|++.|.|...+. ..++++++.|++. .-+.+-++|... ..+.++.|++.|++-|.+
T Consensus 71 y~GGGTps~l~~--~~l~~ll~~i~~~~~~~~~~eit~E~~P~~l--t~e~l~~l~~~Gvnrisl 131 (400)
T PRK07379 71 FFGGGTPSLLSV--EQLERILTTLDQRFGIAPDAEISLEIDPGTF--DLEQLQGYRSLGVNRVSL 131 (400)
T ss_pred EECCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCcC--CHHHHHHHHHCCCCEEEE
Confidence 455555543321 2345666666553 246667788654 345677788888775555
No 168
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=23.17 E-value=3e+02 Score=28.35 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=18.4
Q ss_pred EEEEeCCCCCCCcHHHHHHHHHcCCcEEEE
Q 012987 266 LAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (452)
Q Consensus 266 vaVLAHP~~~~~~~~li~~l~~~GldGIEV 295 (452)
+.+-++|... ..+.++.|+++|++-|.+
T Consensus 89 itie~np~~l--t~e~l~~l~~~Gv~risi 116 (360)
T TIGR00539 89 ITTEANPELI--TAEWCKGLKGAGINRLSL 116 (360)
T ss_pred EEEEeCCCCC--CHHHHHHHHHcCCCEEEE
Confidence 5667777654 245677777778776555
No 169
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=23.12 E-value=3.3e+02 Score=27.36 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=30.1
Q ss_pred CCHHHHHHHHH-----HcCCEEEEeCCCCCCCc--HHHHHHHHHcCCcEEEEeCCCC
Q 012987 251 PLAEVAVQLIH-----RTGGLAVLAHPWALKNP--AAIIRKLKDVGLHGLEVYRSDG 300 (452)
Q Consensus 251 ~~~eeaI~~I~-----~aGGvaVLAHP~~~~~~--~~li~~l~~~GldGIEV~~~~~ 300 (452)
++.+|=.++++ ..|.++|++|-+..... .++.+...+.|.||+=+..|++
T Consensus 50 Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 50 LTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 45555444433 24568888887654322 2345555677888888887754
No 170
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.07 E-value=2.1e+02 Score=27.50 Aligned_cols=44 Identities=9% Similarity=-0.102 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEE
Q 012987 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (452)
Q Consensus 87 ~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI 131 (452)
.++.++.++.+++.|++.|-+.. ..-....++.+.+++.||.+.
T Consensus 13 ~~~l~e~~~~~~e~G~~~vEl~~-~~~~~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 13 ELPFLERFAAAAQAGFTGVEYLF-PYDWDAEALKARLAAAGLEQV 56 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEecC-CccCCHHHHHHHHHHcCCeEE
Confidence 36899999999999999999953 112246677788888999864
No 171
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=23.04 E-value=79 Score=26.81 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=23.9
Q ss_pred eeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCC
Q 012987 77 LHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHD 111 (452)
Q Consensus 77 LH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHd 111 (452)
.|.|+.+|- -.-|.+-.|+..|++.| +|||.
T Consensus 54 VHgH~a~S~---l~hE~i~hA~~mGlktV-fTDHS 84 (90)
T PF08288_consen 54 VHGHQAFST---LCHEAILHARTMGLKTV-FTDHS 84 (90)
T ss_pred EEeehhhhH---HHHHHHHHHHhCCCcEE-eeccc
Confidence 599998882 12357788999999876 79996
No 172
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.87 E-value=4.6e+02 Score=26.07 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 279 AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 279 ~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
...++...+.|++.|-++.+.++.+... ...++|+++|+.+..
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~-----------------~~i~~ak~~G~~v~~ 136 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLE-----------------VAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHH-----------------HHHHHHHHCCCeEEE
Confidence 3456667788999999998876654332 567889999986654
No 173
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=22.75 E-value=1.9e+02 Score=30.29 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=37.3
Q ss_pred EEEeCCCCC----CCcHHHHHHHHHcCC--cE--EEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeee
Q 012987 267 AVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLG 338 (452)
Q Consensus 267 aVLAHP~~~----~~~~~li~~l~~~Gl--dG--IEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tg 338 (452)
|..|+|+.. ...+..++...-+|+ -| .|+.+.+++.... ..+.++|++|+|.++.
T Consensus 128 PL~a~~gGvl~R~GhTEaavdLa~lAGl~p~~vicEil~~dG~ma~~-----------------~~l~~fA~~h~l~~is 190 (339)
T PRK09314 128 PLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAVICEIMKEDGTMARR-----------------DDLEDFAKKHNLKMIY 190 (339)
T ss_pred eEEEcCCCcccCCCCCchhhHHHHHcCCCceEEEEEEecCCCCcccH-----------------HHHHHHHHHcCCcEEE
Confidence 456666422 223334443344565 45 7888876654432 2688999999999999
Q ss_pred ccC
Q 012987 339 GSD 341 (452)
Q Consensus 339 GSD 341 (452)
++|
T Consensus 191 i~d 193 (339)
T PRK09314 191 VSD 193 (339)
T ss_pred HHH
Confidence 999
No 174
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=22.46 E-value=2.3e+02 Score=32.41 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEE
Q 012987 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLE 294 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIE 294 (452)
-+.+.|+++|++|=-+..-==...--.+..-+.|...||||+=
T Consensus 291 ~ak~lvd~~H~~GkeAmmFlgD~WIGtEPy~~~F~~iGlDavv 333 (719)
T TIGR02336 291 NAKELVDMSHAAGKEAMMFLGDQWIGTEPYKDGFDEIGLDAVV 333 (719)
T ss_pred HHHHHHHHHHhcCceEEEeccCceeccccchhhhhhcCcceEe
Confidence 3578999999999776542100000123456678888998863
No 175
>PRK06380 metal-dependent hydrolase; Provisional
Probab=22.33 E-value=2.4e+02 Score=29.48 Aligned_cols=61 Identities=11% Similarity=0.193 Sum_probs=38.1
Q ss_pred ceEEceeeeCCCC--CC-------------------CCCHHHH-------HHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Q 012987 72 NVVFELHSHSNFS--DG-------------------YLSPSKL-------VERAHCNGVKVLALTDHDTMSGIPEAIETA 123 (452)
Q Consensus 72 ~~~vDLH~HT~~S--DG-------------------~~sp~el-------v~~A~~~Gl~~iaITDHdt~~g~~~~~~~a 123 (452)
+=+||.|+|...+ .| .++++++ +..+.+.|...+ .|+.. ....+.+++
T Consensus 54 PG~Vd~H~Hl~~~~~rg~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~--~d~~~--~~~~~~~a~ 129 (418)
T PRK06380 54 PGLINTHAHVGMTASKGLFDDVDLEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAF--VDLYY--SEDIIAKAA 129 (418)
T ss_pred cCEEeeccCCCccccCCcccCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEE--Ecccc--ChHHHHHHH
Confidence 4489999998765 22 2455543 334567787755 46532 234455667
Q ss_pred HhCCCeEEEEEEE
Q 012987 124 RRFGMKIIPGVEI 136 (452)
Q Consensus 124 ~~~gi~vI~GiEi 136 (452)
++.|++.+.|...
T Consensus 130 ~~~G~r~~~~~~~ 142 (418)
T PRK06380 130 EELGIRAFLSWAV 142 (418)
T ss_pred HHhCCeEEEeccc
Confidence 7889888887654
No 176
>PLN02522 ATP citrate (pro-S)-lyase
Probab=22.20 E-value=2.1e+02 Score=32.32 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHH
Q 012987 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLAD 330 (452)
Q Consensus 251 ~~~eeaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~ 330 (452)
-+++||++.-..+.-..+.+.|.. -.+..++++.+.|+.++=|+....+..+.. .+.++|+
T Consensus 67 ~tv~eA~~~~~~~~~~vifvp~~~--a~da~lEa~~a~GIk~~VIiteGfpe~d~~-----------------~l~~~Ar 127 (608)
T PLN02522 67 GSIEAACKAHPTADVFINFASFRS--AAASSMEALKQPTIRVVAIIAEGVPESDTK-----------------QLIAYAR 127 (608)
T ss_pred chHHHHHHhCCCCcEEEEeCChHH--hHHHHHHHHhhCCCCEEEEECCCCChhhHH-----------------HHHHHHH
Confidence 478888876446676777776632 235688888788999999998877654432 6889999
Q ss_pred HcCCeeee
Q 012987 331 TYGLLKLG 338 (452)
Q Consensus 331 ~~gLl~tg 338 (452)
++|+.+.|
T Consensus 128 ~~g~rlIG 135 (608)
T PLN02522 128 ANNKVVIG 135 (608)
T ss_pred HcCCEEEC
Confidence 99987654
No 177
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.19 E-value=2e+02 Score=28.13 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCeeeeccC
Q 012987 324 TYTDLADTYGLLKLGGSD 341 (452)
Q Consensus 324 ~~~~lA~~~gLl~tgGSD 341 (452)
.+.++|++|+|.++.++|
T Consensus 187 ~~~~fA~~~~l~~v~i~d 204 (217)
T PRK03353 187 ECIAFAKQHNMPVLTIED 204 (217)
T ss_pred HHHHHHHHcCCcEEEHHH
Confidence 688999999999999888
No 178
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=22.06 E-value=1.8e+02 Score=29.77 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=30.3
Q ss_pred ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEE
Q 012987 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLAL 107 (452)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaI 107 (452)
.-.+.+|+|... |+.-++.|++++..+.--++|||
T Consensus 118 ~Tr~~vy~qPp~-~~~p~IKE~vR~~I~~A~kVIAI 152 (284)
T PF07894_consen 118 VTRATVYFQPPK-DGQPHIKEVVRRMIQQAQKVIAI 152 (284)
T ss_pred CceEEEEeCCCC-CCCCCHHHHHHHHHHHhcceeEE
Confidence 457899999977 99999999999888888888886
No 179
>PRK15447 putative protease; Provisional
Probab=22.05 E-value=3.2e+02 Score=27.71 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCC-C-cHHHHHHHHHcCCcEEEEeCC
Q 012987 251 PLAEVAVQLIHRTGGLAVLAHPWALK-N-PAAIIRKLKDVGLHGLEVYRS 298 (452)
Q Consensus 251 ~~~eeaI~~I~~aGGvaVLAHP~~~~-~-~~~li~~l~~~GldGIEV~~~ 298 (452)
-.+.++|+.+|++|--++++=|.-.. + ....+..+.+.|.++|.|-+.
T Consensus 48 ~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~ 97 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDL 97 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCH
Confidence 45678899999999888898886432 2 224556677889999998663
No 180
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.05 E-value=1e+02 Score=26.17 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCC
Q 012987 87 YLSPSKLVERAHCNGVKVLALTDHDT 112 (452)
Q Consensus 87 ~~sp~elv~~A~~~Gl~~iaITDHdt 112 (452)
+-..-+.++.|+++|.+.|+||+...
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34566899999999999999999653
No 181
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=22.01 E-value=3.9e+02 Score=27.66 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHc----C--CEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEe
Q 012987 252 LAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY 296 (452)
Q Consensus 252 ~~eeaI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GldGIEV~ 296 (452)
.++++++.|++. + -+.+-++|... ..+.++.|+++|++-|.+=
T Consensus 69 ~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~G~~rvsiG 117 (377)
T PRK08599 69 QLERLLTAIHRNLPLSGLEEFTFEANPGDL--TKEKLQVLKDSGVNRISLG 117 (377)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCCCCC--CHHHHHHHHHcCCCEEEEe
Confidence 345666666664 2 36677888644 3467778888888766553
No 182
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.75 E-value=1e+02 Score=30.13 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEE
Q 012987 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (452)
Q Consensus 86 G~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~Gi 134 (452)
|+..-.+.++.|.+.|.+++-----| ++..+.|++.++.++||+
T Consensus 76 GTVl~~e~a~~a~~aGA~FiVsP~~~-----~~v~~~~~~~~i~~iPG~ 119 (222)
T PRK07114 76 GSIVDAATAALYIQLGANFIVTPLFN-----PDIAKVCNRRKVPYSPGC 119 (222)
T ss_pred EeCcCHHHHHHHHHcCCCEEECCCCC-----HHHHHHHHHcCCCEeCCC
No 183
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=21.63 E-value=3.9e+02 Score=26.25 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=53.8
Q ss_pred CCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCC---CcHHHHHHHHHcCCcEEEEeCC-----CCChhhhhhhhhhhh
Q 012987 242 GPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK---NPAAIIRKLKDVGLHGLEVYRS-----DGKLVDVNFLEKIDN 313 (452)
Q Consensus 242 ~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~~---~~~~li~~l~~~GldGIEV~~~-----~~~~~~~~~l~~~~n 313 (452)
...||.+....+- ..+-.. +|=||+||+.-. ..+..+..++...--+||..=+ ......
T Consensus 83 ~vv~V~GGd~~vN---R~AvE~-~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~L~plL~~~G~~Ra--------- 149 (216)
T PRK03892 83 YLIYVQGGDLRVN---RYAIER-GVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFSLSPLLRANPYERA--------- 149 (216)
T ss_pred eEEEEECCcHHHH---HHHHhc-ccceeecccccCcCCCccHHHHHHHHHcCeEEEEecHHHHhhCchhHH---------
Confidence 3455654433333 333444 799999998532 2467788887777778888422 111111
Q ss_pred HHHHHhhHHHHHHHHHHHcCCeeeeccCCCCC
Q 012987 314 FLLLLCLRQITYTDLADTYGLLKLGGSDYHGR 345 (452)
Q Consensus 314 ~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~ 345 (452)
+.|-.++ ....++++|+.+.+-.|+....
T Consensus 150 -r~L~~~r--~~l~L~rKYd~P~VISS~A~s~ 178 (216)
T PRK03892 150 -NILRFMM--KAWQLVNKYKVPRFITSSAESK 178 (216)
T ss_pred -HHHHHHH--HHHHHHHHcCCCEEEecCcchh
Confidence 1222222 6789999999888888877653
No 184
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.60 E-value=3.7e+02 Score=25.83 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCC---------------CCCHHHHHHHHHhCCCeEEEEEEEEeE
Q 012987 91 SKLVERAHCNGVKVLALTDHDT---------------MSGIPEAIETARRFGMKIIPGVEISTI 139 (452)
Q Consensus 91 ~elv~~A~~~Gl~~iaITDHdt---------------~~g~~~~~~~a~~~gi~vI~GiEis~~ 139 (452)
.+.++.|.+.|++.|.|.+.-+ +....++.+.+++.|+.+...+|-.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~ 140 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG 140 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 7789999999999999999765 233445566778889999988876654
No 185
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.51 E-value=3.5e+02 Score=26.16 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCCcEEEEeCCCC
Q 012987 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG 300 (452)
Q Consensus 255 eaI~~I~~aGGvaVLAHP~~~~~~~~li~~l~~~GldGIEV~~~~~ 300 (452)
++++.+...+=++|+..... ..-..+.+.|.+.|+.-||+-....
T Consensus 5 ~~~~~l~~~~vi~vir~~~~-~~a~~~~~al~~~Gi~~iEit~~~~ 49 (213)
T PRK06552 5 EILTKLKANGVVAVVRGESK-EEALKISLAVIKGGIKAIEVTYTNP 49 (213)
T ss_pred HHHHHHHHCCEEEEEECCCH-HHHHHHHHHHHHCCCCEEEEECCCc
Confidence 56788888999999876521 1223567778899999999987643
No 186
>PRK04302 triosephosphate isomerase; Provisional
Probab=21.30 E-value=4.8e+02 Score=24.97 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=22.2
Q ss_pred HHHcCCEEEEeCCCCC-----CCcHHHHHHHHHcCCcEEEEeCC
Q 012987 260 IHRTGGLAVLAHPWAL-----KNPAAIIRKLKDVGLHGLEVYRS 298 (452)
Q Consensus 260 I~~aGGvaVLAHP~~~-----~~~~~li~~l~~~GldGIEV~~~ 298 (452)
+++.-.++|.|.=... ...+..++.+++.|+||+-+-++
T Consensus 51 v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~s 94 (223)
T PRK04302 51 VAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHS 94 (223)
T ss_pred HHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEecc
Confidence 3333456776632211 11233466777888888888876
No 187
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=21.21 E-value=4.3e+02 Score=25.07 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCC-CC----HHHHHHHHHhCCCeEEEEEEEEe
Q 012987 88 LSPSKLVERAHCNGVKVLALTDHDTM-SG----IPEAIETARRFGMKIIPGVEIST 138 (452)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~-~g----~~~~~~~a~~~gi~vI~GiEis~ 138 (452)
.+|.++++...+.|++.+-|+|-|.+ .+ .....+.++..+++++.|=-|+.
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~ 85 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRS 85 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCC
Confidence 58999999999999999999998765 23 23333444555666665544443
No 188
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=21.07 E-value=74 Score=24.45 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=17.3
Q ss_pred EEceeeeCCCC-CCCCCHHHHHHHHHHcCCcE
Q 012987 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKV 104 (452)
Q Consensus 74 ~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~ 104 (452)
++|+|+|-.+. .....+......+.+.|+..
T Consensus 36 ~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvTT 67 (68)
T PF13594_consen 36 FIDMHTHLGEPGWQSLDPETEAAAALAGGVTT 67 (68)
T ss_dssp EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEEE
T ss_pred eEeeeeccccccccccchhhHHHHHHCcceee
Confidence 79999997643 22333344455555666543
No 189
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=21.06 E-value=7.2e+02 Score=24.76 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHcCCEEEEeCCC-CCCCcHHHHHHHHHcCCcEEEEeCC
Q 012987 252 LAEVAVQLIHRTGGLAVLAHPW-ALKNPAAIIRKLKDVGLHGLEVYRS 298 (452)
Q Consensus 252 ~~eeaI~~I~~aGGvaVLAHP~-~~~~~~~li~~l~~~GldGIEV~~~ 298 (452)
.+.|+++.|+++-.++|...-. ...+...+.+.+.+.|+|||.++|.
T Consensus 144 ~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt 191 (301)
T PRK07259 144 LAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINT 191 (301)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEcc
Confidence 3578889998886777776532 1122345566778899999998764
No 190
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.05 E-value=1.1e+02 Score=29.54 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEE
Q 012987 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (452)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~Gi 134 (452)
=|+..-.+.++.|.+.|.+++-- - .-.++..+.|+++++.++||+
T Consensus 60 AGTVl~~e~a~~ai~aGA~FivS-P----~~~~~vi~~a~~~~i~~iPG~ 104 (201)
T PRK06015 60 AGTILNAKQFEDAAKAGSRFIVS-P----GTTQELLAAANDSDVPLLPGA 104 (201)
T ss_pred eEeCcCHHHHHHHHHcCCCEEEC-C----CCCHHHHHHHHHcCCCEeCCC
Confidence 45555556789999999998853 2 234778889999999999997
No 191
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.01 E-value=2.9e+02 Score=28.08 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHcCC-EEEEeCCCCCCCc--HHHHHHHHHcCCcEEEEeCCCCC
Q 012987 260 IHRTGG-LAVLAHPWALKNP--AAIIRKLKDVGLHGLEVYRSDGK 301 (452)
Q Consensus 260 I~~aGG-vaVLAHP~~~~~~--~~li~~l~~~GldGIEV~~~~~~ 301 (452)
+..++| ++|+|+-+..... .++.+...+.|.|||=+..|++.
T Consensus 67 v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~ 111 (299)
T COG0329 67 VEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYN 111 (299)
T ss_pred HHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 345666 7899998765432 24555567789999999887654
No 192
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=20.99 E-value=8.4e+02 Score=24.33 Aligned_cols=138 Identities=21% Similarity=0.239 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCC----CC--CHHHHHHHHHhCCCeEEEEEEEEeEecCCCCCCCCcEEEEEEecCC
Q 012987 87 YLSPSKLVERAHCNGVKVLALTDHDT----MS--GIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSC 160 (452)
Q Consensus 87 ~~sp~elv~~A~~~Gl~~iaITDHdt----~~--g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~g~~vHILgy~~d~ 160 (452)
.++.+.+...|++.|+..|=|-.--. .. ...+...++++.|+.++ .|+..+. +
T Consensus 16 ~l~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~Iv---SINAlyp----------------F-- 74 (272)
T COG4130 16 GLSVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIV---SINALYP----------------F-- 74 (272)
T ss_pred CCCHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEE---Eeecccc----------------c--
Confidence 47899999999999999998865421 11 34566778888887763 2333221 1
Q ss_pred CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCC------CCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccccHHHHH
Q 012987 161 GPSKYEELENFLANIRDGRFLRAKDMILKLNKLKL------PLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAF 234 (452)
Q Consensus 161 ~~~~~~~L~~~L~~ir~~R~~R~~~~v~~L~~~Gi------~i~~e~v~~~a~~~~~~gr~hia~aLv~~G~v~~~~~af 234 (452)
.++ -..|..+++.|+..-+..|- |++.. ...+...-|....++|.. +...+
T Consensus 75 -----n~w-------t~~~~a~a~~la~yA~acGA~aLvlcPlNd~-----s~~~~~vr~~~lv~Alka------Lkpil 131 (272)
T COG4130 75 -----NEW-------TEERVAEARGLADYAAACGAKALVLCPLNDG-----SWPGTAVRREDLVEALKA------LKPIL 131 (272)
T ss_pred -----ccc-------ChHHHHHHHHHHHHHHhcCCceEEEEeccCC-----CCCCcccchHHHHHHHHH------hhHHH
Confidence 111 12355667777776665542 33210 011223344455555543 23333
Q ss_pred HHHhhcC--CC-ccccCCCCCHHHHHHHHHHcCCEEE
Q 012987 235 ARYLYDG--GP-AYSTGSEPLAEVAVQLIHRTGGLAV 268 (452)
Q Consensus 235 ~~yL~~g--~p-~yv~~~~~~~eeaI~~I~~aGGvaV 268 (452)
+.|=-.| .| .|-....-+-.|+.++|.++||--|
T Consensus 132 ~~~gi~GLVEPLGF~~csLRsk~eA~~aI~aa~g~~~ 168 (272)
T COG4130 132 DEYGITGLVEPLGFRVCSLRSKAEAAEAIRAAGGERV 168 (272)
T ss_pred HHhCccccccccCchhhhhhhHHHHHHHHHHhCCCce
Confidence 3331111 11 2322334567899999999999744
No 193
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.77 E-value=1.8e+02 Score=28.97 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEE
Q 012987 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (452)
Q Consensus 87 ~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis 137 (452)
.+.++..++.|++.|++++-|-|- .+.-..++.+.++++|+.+|+-+--+
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~~I~lvap~ 152 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLDLIFLVAPT 152 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 357788999999999999999874 23334456677788888887654433
No 194
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.65 E-value=3.8e+02 Score=28.00 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=35.8
Q ss_pred HhhcCCCccccCCCCCHHHHHHHHHHc----C--CEEEEeCCCCCCCcHHHHHHHHHcCCcEEEE
Q 012987 237 YLYDGGPAYSTGSEPLAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 295 (452)
Q Consensus 237 yL~~g~p~yv~~~~~~~eeaI~~I~~a----G--GvaVLAHP~~~~~~~~li~~l~~~GldGIEV 295 (452)
|++.|.|.+.+.. .+++.++.|++. . -+.+-++|.... .+.++.|+++|++=|.+
T Consensus 60 y~GGGTPs~l~~~--~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~--~e~L~~l~~~Gvnrisl 120 (380)
T PRK09057 60 FFGGGTPSLMQPE--TVAALLDAIARLWPVADDIEITLEANPTSVE--AGRFRGYRAAGVNRVSL 120 (380)
T ss_pred EeCCCccccCCHH--HHHHHHHHHHHhCCCCCCccEEEEECcCcCC--HHHHHHHHHcCCCEEEE
Confidence 5666666554322 245667777652 2 478899997543 36788899999875554
No 195
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=20.26 E-value=1.4e+02 Score=31.69 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCcEEEEe----cCCCCCCHHHHHHHHHhCCCeEEEEEEEEe
Q 012987 91 SKLVERAHCNGVKVLALT----DHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (452)
Q Consensus 91 ~elv~~A~~~Gl~~iaIT----DHdt~~g~~~~~~~a~~~gi~vI~GiEis~ 138 (452)
++=++.|++.|+|++|+- |.-+...+..++++|+..|++++.-..+..
T Consensus 20 ~~di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~~ 71 (386)
T PF03659_consen 20 EADIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFSFDMNS 71 (386)
T ss_pred HHHHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEEecccC
Confidence 345789999999999983 333333467788899988999887777653
Done!