BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012991
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide
Length = 390
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 66 FLQQPDDFYFNS---LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGF 122
+LQ+ F + +++ I + R A+ + N D I++ DN TT IVL +
Sbjct: 42 YLQENGPFSIAANQHIQQLIAQLRQALAETFNVDP-NTITITDNVTTGCDIVLWGL---- 96
Query: 123 TEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASXXXXXXXXXXXXX 182
+H+ D +L+ C + +QA R G + + FP+A+
Sbjct: 97 ---DWHQGDEILLTDCEHPGIIAIVQAIAARFG---ITYRF-FPVAATLNQGDAAAVLAN 149
Query: 183 XXXXXXXMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVD---QVFVDAAHAMGSIKIDV 239
RL I+ H+ V+P+ +++ +CR + +V VD A + GS+ +D
Sbjct: 150 HLGPK---TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDF 206
Query: 240 KEIGADFYVSNLHKWFFCPPSVAFLYCRKSILS 272
+ D+Y HKWF P V LY L
Sbjct: 207 SRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLG 239
>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N2T|B Chain B, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N31|A Chain A, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
pdb|1N31|B Chain B, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
Length = 386
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 21/213 (9%)
Query: 66 FLQQPDDFYFNS---LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGF 122
+LQ+ F + +++ I + R A+ + N D I++ DN TT IVL +
Sbjct: 38 YLQENGPFSIAANQHIQQLIAQLRQALAETFNVDP-NTITITDNVTTGCDIVLWGL---- 92
Query: 123 TEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASXXXXXXXXXXXXX 182
+H+ D +L+ C + +QA R G + + FP+A+
Sbjct: 93 ---DWHQGDEILLTDCEHPGIIAIVQAIAARFG---ITYRF-FPVAATLNQGDAAAVLAN 145
Query: 183 XXXXXXXMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVD---QVFVDAAHAMGSIKIDV 239
RL I+ H+ V+P+ +++ +CR + +V VD A + GS+ +D
Sbjct: 146 HLGPK---TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDF 202
Query: 240 KEIGADFYVSNLHKWFFCPPSVAFLYCRKSILS 272
+ D+Y H WF P V LY L
Sbjct: 203 SRLEVDYYAFTGHAWFAGPAGVGGLYIHGDCLG 235
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
RL I H++++ P+ +++ + G +V VD A A+ +DV+ + DFYV +
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGA-KVLVDGAQAVMHHPVDVQALDCDFYVFSG 224
Query: 252 HKWFFCPPSVAFLYCRKSIL 271
HK + P + LY ++++L
Sbjct: 225 HK-LYGPTGIGILYVKEALL 243
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
RL I H++++ P+ +++ + G +V VD A A+ +DV+ + DFYV +
Sbjct: 168 RLLAITHVSNVLGTENPLAEMITLAHQHGA-KVLVDGAQAVMHHPVDVQALDCDFYVFSG 226
Query: 252 HKWFFCPPSVAFLYCRKSIL 271
HK + P + LY ++++L
Sbjct: 227 HK-LYGPTGIGILYVKEALL 245
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
RL I H++++ P+ +++ + G +V VD A A+ +DV+ + DFYV +
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGA-KVLVDGAQAVMHHPVDVQALDCDFYVFSG 224
Query: 252 HKWFFCPPSVAFLYCRKSIL 271
HK + P + LY ++++L
Sbjct: 225 HK-LYGPTGIGILYVKEALL 243
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
RL I H++++ P+ +++ + G +V VD A A+ +DV+ + DFYV +
Sbjct: 166 RLLAITHVSNVLGTENPLAEMITLAHQHGA-KVLVDGAQAVMHHPVDVQALDCDFYVFSG 224
Query: 252 HKWFFCPPSVAFLYCRKSIL 271
HK + P + LY ++++L
Sbjct: 225 HK-LYGPTGIGILYVKEALL 243
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 209 VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHK 253
V+K+ K+C + V + V+ A+A+G + + +KEIGADF V + HK
Sbjct: 166 VKKIAKVCSEYDV-PLLVNGAYAIGRMPVSLKEIGADFIVGSGHK 209
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
+L + HI++ V P ++ ++ G +V VDA + +DV+ I D+ V++
Sbjct: 171 KLVTVVHISNTLGCVNPAEEIAQLAHQAGA-KVLVDACQSAPHYPLDVQLIDCDWLVASG 229
Query: 252 HKWFFCPPS-VAFLYCRKSILSS 273
HK C P+ + FLY ++ IL +
Sbjct: 230 HK--MCAPTGIGFLYGKEEILEA 250
>pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9X|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9Y|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Y|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Z|A Chain A, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
pdb|3A9Z|B Chain B, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
Length = 432
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 209 VRKLVKICRDEGVDQVFV--DAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266
++ L +I G+ +V V DAA A+G ++DV+++G DF HK++ P + LY
Sbjct: 201 IKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG--PRIGALYV 258
Query: 267 R 267
R
Sbjct: 259 R 259
>pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|B Chain B, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|D Chain D, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 224 VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCR 267
V DAA A+G ++DV+++G DF HK++ P + LY R
Sbjct: 225 VHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYG--PRIGALYIR 266
>pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase
pdb|3GZC|B Chain B, Structure Of Human Selenocysteine Lyase
pdb|3GZD|C Chain C, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 224 VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCR 267
V DAA A+G ++DV+++G DF HK++ P + LY R
Sbjct: 225 VHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYG--PRIGALYIR 266
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLH 252
L I H+ + VV + + ++CR G+ VDA ++G + ID+ ++ D + H
Sbjct: 147 LVSIMHVNNEIGVVQDIAAIGEMCRARGI-IYHVDATQSVGKLPIDLSQLKVDLMSFSGH 205
Query: 253 KWFFCPPSVAFLYCRK 268
K + P + LY R+
Sbjct: 206 K-IYGPKGIGALYVRR 220
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLH 252
L I H+ + VV + + ++CR G+ VDA ++G + ID+ ++ D + H
Sbjct: 166 LVSIMHVNNEIGVVQDIAAIGEMCRARGI-IYHVDATQSVGKLPIDLSQLKVDLMSFSGH 224
Query: 253 KWFFCPPSVAFLYCRK 268
K + P + LY R+
Sbjct: 225 K-IYGPKGIGALYVRR 239
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 205 VVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVA 262
V+ P+ +L K+ ++ VFVDA AMG I + G D S+ K F PP +A
Sbjct: 161 VLNPLPELAKVAKEHD-KLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLA 217
>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4HVK|A Chain A, Crystal Structure And Functional Studies Of An Unusual
L-Cysteine Desulfurase From Archaeoglobus Fulgidus
Length = 382
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLH 252
L + H + + PV ++ ++ G + +DA ++G I++DV++IGAD + +
Sbjct: 141 LVSVQHANNEIGTIQPVEEISEVLA--GKAALHIDATASVGQIEVDVEKIGADMLTISSN 198
Query: 253 KWFFCPPSVAFLYCRK 268
+ P V L+ RK
Sbjct: 199 D-IYGPKGVGALWIRK 213
>pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
pdb|3CAI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
Length = 406
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
RL ++ + V +R + K+ D G V VD + A +D++E AD N
Sbjct: 167 RLVAVNSASGTLGGVTDLRAMTKLVHDVGA-LVVVDHSAAAPYRLLDIRETDADVVTVNA 225
Query: 252 HKWFFCPPSVAFLYCRKSILSS 273
H W PP A ++ S+++S
Sbjct: 226 HAW-GGPPIGAMVFRDPSVMNS 246
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 208 PVRKLVKICRDEGVDQ-VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266
PV + +I + + + V VDA +G I ++++ D+ + HK F P V Y
Sbjct: 157 PVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHK-FHGPKGVGITYI 215
Query: 267 RKSI 270
RK +
Sbjct: 216 RKGV 219
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 208 PVRKLVKICRDEGVDQ-VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266
PV + +I + + + V VDA +G I ++++ D+ + HK F P V Y
Sbjct: 157 PVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHK-FHGPKGVGITYI 215
Query: 267 RKSI 270
RK +
Sbjct: 216 RKGV 219
>pdb|2YRI|A Chain A, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRI|B Chain B, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRR|A Chain A, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
pdb|2YRR|B Chain B, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
Length = 353
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNL 251
R+ + H + V+ P + + ++ G F+DA +G + ++ +G D+ +
Sbjct: 126 RMVALVHGETSTGVLNPAEAIGALAKEAGA-LFFLDAVTTLGMLPFSMRAMGVDYAFTGS 184
Query: 252 HKWFFCPPSVA 262
K PP +A
Sbjct: 185 QKCLSAPPGLA 195
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 303 QLVIPSAVTFVSRFEGGIDGIMQRNHE---QALKMARMLANAWGTSLGSPPEICAAMVM- 358
+++ S + + S +E G+ ++ E + +K NA +G+PP+ A +VM
Sbjct: 348 NMLVDSDLYYSSTWESGLSKKLKNKKEIDEEKVKEVVDFLNAAYKEIGNPPKYYAILVMD 407
Query: 359 ---VGLPSRLRVMGEDDALRLRGHLRVRFGVEVP--IHYQAPK 396
+G V+GE + R H +R VE+P +Y P+
Sbjct: 408 GDDMGKVISGEVLGE---ISTRIHPNIRDYVEIPEAKYYSTPQ 447
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 303 QLVIPSAVTFVSRFEGGIDGIMQRNHE---QALKMARMLANAWGTSLGSPPEICAAMVM- 358
+++ S + + S +E G+ ++ E + +K NA +G+PP+ A +VM
Sbjct: 363 NMLVDSDLYYSSTWESGLSKKLKNKKEIDEEKVKEVVDFLNAAYKEIGNPPKYYAILVMD 422
Query: 359 ---VGLPSRLRVMGEDDALRLRGHLRVRFGVEVP--IHYQAPK 396
+G V+GE + R H +R VE+P +Y P+
Sbjct: 423 GDDMGKVISGEVLGE---ISTRIHPNIRDYVEIPEAKYYSTPQ 462
>pdb|1QZ9|A Chain A, The Three Dimensional Structure Of Kynureninase From
Pseudomonas Fluorescens
Length = 416
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 227 DAAHAMGSIKIDVKEIGADFYVSNLHKWFF-CPPSVAFLYCRKSILSSDMHHPVVSHEFG 285
D AH+ G++ +D+ + GAD+ + +K+ P S AF++ + D+ +S FG
Sbjct: 201 DLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQL--CDLVPQPLSGWFG 258
Query: 286 NG--LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327
+ +E + + + L +T ++ E G+D Q +
Sbjct: 259 HSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTD 302
>pdb|3POL|A Chain A, 2.3 Angstrom Crystal Structure Of
3-deoxy-manno-octulosonate Cytidylyltransferase (kdsb)
From Acinetobacter Baumannii
Length = 276
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 204 CVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI 237
CV ++ +ICR EGVD V A H G+ ++
Sbjct: 69 CVATDDERIAEICRAEGVDVVLTSADHPSGTDRL 102
>pdb|4FCU|A Chain A, 1.9 Angstrom Crystal Structure Of
3-Deoxy-Manno-Octulosonate Cytidylyltransferase (Kdsb)
From Acinetobacter Baumannii Without His- Tag Bound To
The Active Site
Length = 253
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 204 CVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI 237
CV ++ +ICR EGVD V A H G+ ++
Sbjct: 46 CVATDDERIAEICRAEGVDVVLTSADHPSGTDRL 79
>pdb|1M32|A Chain A, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|B Chain B, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|C Chain C, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|D Chain D, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|E Chain E, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|F Chain F, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
Length = 366
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 226 VDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH 277
VDA + G I D+ + D+ +S+ +K P AF+ R+ L++ H
Sbjct: 166 VDAXSSFGGIPXDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGH 217
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117
++ + V L DD G+++LV++A AA+IVL++
Sbjct: 393 VIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLRE 428
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117
++ + V L DD G+++LV++A AA+IVL++
Sbjct: 393 VIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLRE 428
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117
++ + V L DD G+++LV++A AA+IVL++
Sbjct: 393 VIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLRE 428
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117
++ + V L DD G+++LV++A AA+IVL++
Sbjct: 88 VIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLRE 123
>pdb|2Z9U|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9U|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9V|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9V|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9W|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9W|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9X|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
pdb|2Z9X|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
Length = 392
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 20/173 (11%)
Query: 224 VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHE 283
+ VDA + G +K ++ AD YV+ +K PP + + + + +P+
Sbjct: 167 LIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPR- 225
Query: 284 FGNGLPI---ESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE-----QALKMA 335
+ L I E+AW +RD PS V+ ++ + +D + E AL
Sbjct: 226 -ASMLSIVDWENAW--SRDKPFPFT-PS-VSEINGLDVALDLYLNEGPEAVWARHALTAK 280
Query: 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGED--DALRLRGHLRVRFGV 386
M A T++G + AA + P+ V D D LR R R+GV
Sbjct: 281 AMRAGV--TAMGL--SVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGV 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,914,343
Number of Sequences: 62578
Number of extensions: 502097
Number of successful extensions: 1337
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 35
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)