Query 012991
Match_columns 452
No_of_seqs 131 out of 2024
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 20:09:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kmj_A Selenocysteine lyase; p 100.0 2.1E-39 7.3E-44 320.9 33.1 380 23-442 2-404 (406)
2 3cai_A Possible aminotransfera 100.0 1.3E-39 4.6E-44 322.7 31.5 371 24-439 11-405 (406)
3 1elu_A L-cysteine/L-cystine C- 100.0 1.7E-38 5.7E-43 312.9 37.5 365 25-439 3-388 (390)
4 3e9k_A Kynureninase; kynurenin 100.0 7.3E-39 2.5E-43 323.3 29.0 362 38-443 66-461 (465)
5 1t3i_A Probable cysteine desul 100.0 1.2E-37 4E-42 309.9 35.6 379 25-442 9-412 (420)
6 2z9v_A Aspartate aminotransfer 100.0 8.7E-38 3E-42 308.2 28.7 357 32-442 2-370 (392)
7 4hvk_A Probable cysteine desul 100.0 1.4E-37 4.7E-42 305.1 29.8 366 40-444 1-374 (382)
8 4eb5_A Probable cysteine desul 100.0 3.5E-37 1.2E-41 302.6 30.1 363 40-442 1-372 (382)
9 1qz9_A Kynureninase; kynurenin 100.0 2E-36 6.7E-41 301.0 34.9 361 24-443 14-402 (416)
10 2huf_A Alanine glyoxylate amin 100.0 2.1E-37 7.2E-42 305.5 27.1 363 25-442 4-382 (393)
11 1eg5_A Aminotransferase; PLP-d 100.0 4.9E-36 1.7E-40 294.5 36.7 362 41-442 3-375 (384)
12 2dr1_A PH1308 protein, 386AA l 100.0 6.8E-37 2.3E-41 301.0 30.0 363 27-442 8-378 (386)
13 3qm2_A Phosphoserine aminotran 100.0 2.1E-38 7.3E-43 309.3 18.1 345 40-442 27-384 (386)
14 3e77_A Phosphoserine aminotran 100.0 2.3E-38 7.9E-43 307.2 17.0 352 40-442 13-374 (377)
15 3vax_A Putative uncharacterize 100.0 6.5E-37 2.2E-41 302.7 27.7 372 33-441 14-398 (400)
16 1vjo_A Alanine--glyoxylate ami 100.0 1.1E-36 3.6E-41 300.6 26.0 364 23-440 17-392 (393)
17 3lvm_A Cysteine desulfurase; s 100.0 6.8E-36 2.3E-40 297.7 32.0 369 37-443 20-399 (423)
18 3nnk_A Ureidoglycine-glyoxylat 100.0 1.3E-35 4.5E-40 294.4 29.3 353 38-443 11-390 (411)
19 1iug_A Putative aspartate amin 100.0 9.8E-36 3.4E-40 289.0 27.1 338 42-442 3-347 (352)
20 2yrr_A Aminotransferase, class 100.0 3.4E-36 1.2E-40 292.1 23.3 342 42-442 3-352 (353)
21 2ch1_A 3-hydroxykynurenine tra 100.0 1.4E-35 4.9E-40 292.7 26.6 356 32-442 10-382 (396)
22 3kgw_A Alanine-glyoxylate amin 100.0 3.2E-35 1.1E-39 289.6 28.7 349 42-444 25-389 (393)
23 3zrp_A Serine-pyruvate aminotr 100.0 1.5E-35 5.1E-40 291.0 25.8 340 46-443 8-363 (384)
24 3isl_A Purine catabolism prote 100.0 5.5E-35 1.9E-39 290.3 30.2 348 40-442 12-389 (416)
25 3m5u_A Phosphoserine aminotran 100.0 5.4E-36 1.9E-40 289.7 17.9 342 39-442 5-359 (361)
26 3a9z_A Selenocysteine lyase; P 100.0 1.3E-33 4.3E-38 282.2 31.8 379 31-442 11-427 (432)
27 1m32_A 2-aminoethylphosphonate 100.0 2.2E-33 7.4E-38 273.7 31.8 347 40-441 5-363 (366)
28 3ffr_A Phosphoserine aminotran 100.0 3.7E-34 1.3E-38 278.8 25.7 340 40-440 5-361 (362)
29 3f9t_A TDC, L-tyrosine decarbo 100.0 5.2E-33 1.8E-37 273.9 33.2 342 41-441 33-396 (397)
30 3f0h_A Aminotransferase; RER07 100.0 6.2E-34 2.1E-38 279.0 23.1 349 39-443 19-374 (376)
31 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.3E-33 4.5E-38 276.1 23.2 354 37-442 6-369 (371)
32 3hbx_A GAD 1, glutamate decarb 100.0 4.3E-32 1.5E-36 275.6 32.1 379 22-442 35-443 (502)
33 2bkw_A Alanine-glyoxylate amin 100.0 1.7E-32 5.9E-37 269.4 26.4 349 39-442 5-383 (385)
34 2dgk_A GAD-beta, GADB, glutama 100.0 1.2E-31 4.1E-36 269.5 31.0 382 20-442 19-433 (452)
35 2c0r_A PSAT, phosphoserine ami 100.0 1.9E-32 6.7E-37 267.1 23.9 343 40-441 4-359 (362)
36 2w8t_A SPT, serine palmitoyltr 100.0 1E-30 3.5E-35 260.7 36.1 339 38-442 64-414 (427)
37 3tqx_A 2-amino-3-ketobutyrate 100.0 3.2E-31 1.1E-35 261.7 30.2 343 37-442 42-395 (399)
38 3get_A Histidinol-phosphate am 100.0 8.2E-31 2.8E-35 255.8 32.4 335 20-440 14-364 (365)
39 3mc6_A Sphingosine-1-phosphate 100.0 7.6E-32 2.6E-36 274.2 25.0 375 20-443 39-437 (497)
40 3ffh_A Histidinol-phosphate am 100.0 3.8E-31 1.3E-35 258.0 28.4 335 21-440 17-363 (363)
41 3ke3_A Putative serine-pyruvat 100.0 1.4E-31 4.9E-36 262.7 25.3 324 75-442 30-375 (379)
42 3a2b_A Serine palmitoyltransfe 100.0 1.1E-30 3.7E-35 258.0 30.7 340 36-442 41-391 (398)
43 1fc4_A 2-amino-3-ketobutyrate 100.0 1.5E-30 5E-35 257.4 31.3 341 37-442 44-396 (401)
44 3mad_A Sphingosine-1-phosphate 100.0 8.9E-31 3E-35 267.3 30.6 341 53-442 110-468 (514)
45 2z67_A O-phosphoseryl-tRNA(SEC 100.0 3.5E-32 1.2E-36 273.3 18.9 361 25-440 67-455 (456)
46 3dyd_A Tyrosine aminotransfera 100.0 3.4E-31 1.2E-35 264.2 25.8 360 26-445 36-426 (427)
47 3dzz_A Putative pyridoxal 5'-p 100.0 1.4E-30 4.8E-35 256.4 29.1 348 33-442 22-388 (391)
48 1j32_A Aspartate aminotransfer 100.0 8.8E-31 3E-35 257.8 27.0 352 22-442 14-386 (388)
49 1w23_A Phosphoserine aminotran 100.0 8.9E-32 3E-36 262.0 19.7 345 39-442 3-359 (360)
50 3ly1_A Putative histidinol-pho 100.0 1.9E-30 6.3E-35 252.2 28.6 325 36-443 14-352 (354)
51 2z61_A Probable aspartate amin 100.0 6.4E-31 2.2E-35 257.1 24.4 326 36-441 27-369 (370)
52 2jis_A Cysteine sulfinic acid 100.0 6.1E-30 2.1E-34 261.0 32.3 364 40-441 109-513 (515)
53 1gd9_A Aspartate aminotransfer 100.0 2.7E-30 9.1E-35 254.4 28.0 339 38-442 26-385 (389)
54 2bwn_A 5-aminolevulinate synth 100.0 1.2E-30 4.2E-35 257.9 25.7 355 25-441 25-398 (401)
55 2qma_A Diaminobutyrate-pyruvat 100.0 3.3E-30 1.1E-34 261.9 29.3 366 39-442 100-495 (497)
56 1o4s_A Aspartate aminotransfer 100.0 1.1E-30 3.7E-35 257.4 24.8 330 36-441 39-387 (389)
57 4dq6_A Putative pyridoxal phos 100.0 2.3E-30 7.9E-35 254.8 26.4 348 26-440 22-390 (391)
58 2x5d_A Probable aminotransfera 100.0 1.1E-29 3.6E-34 252.2 31.3 341 36-444 35-399 (412)
59 1bs0_A Protein (8-amino-7-oxon 100.0 4.1E-30 1.4E-34 252.6 27.9 337 37-439 38-383 (384)
60 1b5p_A Protein (aspartate amin 100.0 1.5E-30 5.2E-35 256.0 24.6 335 36-441 29-383 (385)
61 1svv_A Threonine aldolase; str 100.0 2.1E-30 7.2E-35 251.9 24.5 334 37-442 12-357 (359)
62 1wyu_A Glycine dehydrogenase ( 100.0 5.9E-30 2E-34 256.0 28.1 359 22-440 43-437 (438)
63 3g0t_A Putative aminotransfera 100.0 6.6E-30 2.3E-34 255.5 28.0 352 37-442 43-436 (437)
64 3euc_A Histidinol-phosphate am 100.0 3.1E-30 1.1E-34 251.9 25.0 328 37-441 29-366 (367)
65 3h14_A Aminotransferase, class 100.0 1.2E-29 4E-34 250.0 28.4 345 26-442 19-381 (391)
66 2okj_A Glutamate decarboxylase 100.0 1.8E-29 6.3E-34 256.9 30.4 388 21-442 68-501 (504)
67 3kax_A Aminotransferase, class 100.0 3.5E-30 1.2E-34 252.8 24.2 340 37-440 23-382 (383)
68 1xi9_A Putative transaminase; 100.0 2E-30 6.7E-35 257.0 22.6 343 32-442 32-402 (406)
69 3k40_A Aromatic-L-amino-acid d 100.0 2.1E-29 7.2E-34 254.1 30.2 330 76-442 109-470 (475)
70 2zc0_A Alanine glyoxylate tran 100.0 2.7E-29 9.3E-34 248.7 29.3 349 37-442 33-403 (407)
71 2zyj_A Alpha-aminodipate amino 100.0 4E-30 1.4E-34 253.9 23.0 350 29-442 22-392 (397)
72 3nra_A Aspartate aminotransfer 100.0 4.1E-30 1.4E-34 254.5 23.0 342 39-442 40-404 (407)
73 3vp6_A Glutamate decarboxylase 100.0 1.3E-28 4.4E-33 250.4 33.9 390 20-441 70-503 (511)
74 4e1o_A HDC, histidine decarbox 100.0 1.3E-28 4.3E-33 249.0 33.4 330 76-442 114-477 (481)
75 3hdo_A Histidinol-phosphate am 100.0 1E-29 3.6E-34 247.6 24.6 324 37-442 25-354 (360)
76 1v2d_A Glutamine aminotransfer 100.0 1.2E-29 4.2E-34 249.0 25.1 335 38-443 25-371 (381)
77 3kki_A CAI-1 autoinducer synth 100.0 1.2E-28 4.2E-33 244.3 31.5 335 37-443 58-404 (409)
78 3p1t_A Putative histidinol-pho 100.0 3.4E-29 1.2E-33 241.5 26.1 316 37-442 15-336 (337)
79 1iay_A ACC synthase 2, 1-amino 100.0 4.2E-29 1.4E-33 249.1 27.0 356 38-442 36-426 (428)
80 3l8a_A METC, putative aminotra 100.0 1.9E-29 6.5E-34 251.1 24.5 343 37-441 60-420 (421)
81 2fyf_A PSAT, phosphoserine ami 100.0 1.6E-29 5.4E-34 249.8 23.7 336 42-442 42-397 (398)
82 2gb3_A Aspartate aminotransfer 100.0 1.1E-29 3.8E-34 251.8 22.3 338 36-442 41-401 (409)
83 1js3_A DDC;, DOPA decarboxylas 100.0 2.7E-28 9.1E-33 247.3 32.4 385 17-442 44-473 (486)
84 1bw0_A TAT, protein (tyrosine 100.0 3.1E-29 1.1E-33 249.1 25.0 344 38-442 33-412 (416)
85 1c7n_A Cystalysin; transferase 100.0 5.6E-29 1.9E-33 245.8 26.6 338 38-442 31-392 (399)
86 2o1b_A Aminotransferase, class 100.0 1.4E-29 4.9E-34 250.6 22.2 338 37-443 46-403 (404)
87 3aow_A Putative uncharacterize 100.0 1.3E-28 4.3E-33 246.9 29.2 348 37-442 75-444 (448)
88 2dou_A Probable N-succinyldiam 100.0 2.4E-29 8.1E-34 246.5 23.3 333 36-440 23-375 (376)
89 3fdb_A Beta C-S lyase, putativ 100.0 3.6E-29 1.2E-33 245.2 24.4 343 25-442 6-375 (377)
90 1wyu_B Glycine dehydrogenase s 100.0 1.7E-28 5.7E-33 247.8 29.9 366 23-442 44-440 (474)
91 2o0r_A RV0858C (N-succinyldiam 100.0 6E-29 2.1E-33 246.7 26.2 351 38-443 25-396 (411)
92 1yiz_A Kynurenine aminotransfe 100.0 7.3E-29 2.5E-33 247.4 26.6 354 38-441 37-427 (429)
93 1rv3_A Serine hydroxymethyltra 100.0 1.3E-30 4.3E-35 263.6 13.9 353 38-442 44-430 (483)
94 1vp4_A Aminotransferase, putat 100.0 2E-29 6.8E-34 251.3 22.0 354 37-449 42-424 (425)
95 1u08_A Hypothetical aminotrans 100.0 1.1E-28 3.9E-33 242.6 27.0 335 38-438 30-385 (386)
96 3ele_A Amino transferase; RER0 100.0 2E-28 6.8E-33 241.8 28.1 337 37-442 34-395 (398)
97 1d2f_A MALY protein; aminotran 100.0 2.3E-28 7.9E-33 240.7 28.3 338 38-442 28-388 (390)
98 3qgu_A LL-diaminopimelate amin 100.0 1.4E-28 4.7E-33 246.9 25.1 344 37-442 68-439 (449)
99 3ftb_A Histidinol-phosphate am 100.0 2.6E-28 9E-33 237.6 25.6 321 36-441 24-359 (361)
100 3fvs_A Kynurenine--oxoglutarat 100.0 1.2E-28 4E-33 245.4 23.0 355 37-442 27-421 (422)
101 1lc5_A COBD, L-threonine-O-3-p 100.0 1.6E-28 5.5E-33 239.6 23.4 336 24-442 10-359 (364)
102 3cq5_A Histidinol-phosphate am 100.0 7.6E-28 2.6E-32 235.3 27.8 321 40-442 32-367 (369)
103 3b46_A Aminotransferase BNA3; 100.0 1.5E-28 5E-33 246.6 23.1 351 36-439 55-443 (447)
104 3piu_A 1-aminocyclopropane-1-c 100.0 1.8E-28 6.1E-33 245.1 23.2 356 38-442 38-431 (435)
105 3ezs_A Aminotransferase ASPB; 100.0 1.5E-28 5E-33 240.8 21.5 331 36-442 22-374 (376)
106 3jtx_A Aminotransferase; NP_28 100.0 7.8E-28 2.7E-32 237.3 25.7 340 36-440 28-395 (396)
107 2fnu_A Aminotransferase; prote 100.0 1.7E-27 5.7E-32 233.0 26.8 342 48-442 8-371 (375)
108 1v72_A Aldolase; PLP-dependent 100.0 1E-28 3.5E-33 239.9 18.0 329 38-442 7-352 (356)
109 3asa_A LL-diaminopimelate amin 100.0 3.3E-28 1.1E-32 240.5 21.8 339 37-442 32-392 (400)
110 3op7_A Aminotransferase class 100.0 5.3E-28 1.8E-32 236.8 22.9 303 76-443 59-371 (375)
111 3e2y_A Kynurenine-oxoglutarate 100.0 9.1E-28 3.1E-32 237.9 23.9 358 28-438 12-408 (410)
112 2cb1_A O-acetyl homoserine sul 100.0 1.1E-26 3.7E-31 230.4 31.5 322 74-438 50-411 (412)
113 1fg7_A Histidinol phosphate am 100.0 1.2E-27 4.2E-32 232.7 23.6 284 82-439 60-354 (356)
114 3fkd_A L-threonine-O-3-phospha 100.0 1.7E-27 5.7E-32 231.0 24.4 320 37-443 14-342 (350)
115 3ei9_A LL-diaminopimelate amin 100.0 9.6E-28 3.3E-32 239.6 22.6 346 36-441 54-426 (432)
116 1b9h_A AHBA synthase, protein 100.0 3.9E-27 1.3E-31 231.8 26.4 343 53-442 17-387 (388)
117 3g7q_A Valine-pyruvate aminotr 100.0 1.6E-27 5.5E-32 236.7 21.8 348 37-442 30-412 (417)
118 3tcm_A Alanine aminotransferas 100.0 4.2E-27 1.5E-31 238.9 24.7 317 76-442 130-493 (500)
119 1pff_A Methionine gamma-lyase; 100.0 1.1E-27 3.6E-32 230.6 19.2 300 84-439 2-330 (331)
120 3frk_A QDTB; aminotransferase, 100.0 1.8E-27 6E-32 233.0 20.8 334 52-441 16-366 (373)
121 2rfv_A Methionine gamma-lyase; 100.0 6.2E-27 2.1E-31 231.2 24.9 344 40-439 27-396 (398)
122 3dr4_A Putative perosamine syn 100.0 7.4E-27 2.5E-31 230.1 25.3 348 38-440 22-390 (391)
123 3if2_A Aminotransferase; YP_26 100.0 1.8E-27 6.1E-32 238.5 21.0 358 37-442 30-439 (444)
124 1mdo_A ARNB aminotransferase; 100.0 1.3E-26 4.5E-31 228.3 26.7 344 51-443 18-386 (393)
125 3uwc_A Nucleotide-sugar aminot 100.0 4.2E-27 1.5E-31 230.2 23.0 346 40-443 8-371 (374)
126 1jg8_A L-ALLO-threonine aldola 100.0 2.8E-27 9.4E-32 229.1 21.2 333 38-442 3-345 (347)
127 2x3l_A ORN/Lys/Arg decarboxyla 100.0 2.6E-28 8.9E-33 244.2 14.2 290 77-443 54-353 (446)
128 2vi8_A Serine hydroxymethyltra 100.0 7.2E-28 2.5E-32 238.2 16.2 343 46-443 30-387 (405)
129 1vef_A Acetylornithine/acetyl- 100.0 1.3E-26 4.3E-31 228.7 24.8 316 47-440 58-394 (395)
130 2fq6_A Cystathionine beta-lyas 100.0 7.9E-27 2.7E-31 230.7 23.0 313 74-438 76-413 (415)
131 2dkj_A Serine hydroxymethyltra 100.0 4.8E-28 1.6E-32 239.7 14.2 360 26-442 12-387 (407)
132 1gc0_A Methionine gamma-lyase; 100.0 1.8E-26 6.3E-31 227.8 25.3 311 75-439 60-397 (398)
133 2eh6_A Acoat, acetylornithine 99.9 5.5E-26 1.9E-30 222.4 27.6 310 49-439 43-374 (375)
134 1e5e_A MGL, methionine gamma-l 99.9 3.1E-26 1.1E-30 226.4 25.5 309 74-442 56-394 (404)
135 2r2n_A Kynurenine/alpha-aminoa 99.9 5.3E-26 1.8E-30 226.5 27.1 310 80-442 82-423 (425)
136 3ez1_A Aminotransferase MOCR f 99.9 4.3E-27 1.5E-31 234.2 18.9 346 38-444 25-416 (423)
137 1cs1_A CGS, protein (cystathio 99.9 5.2E-26 1.8E-30 223.6 25.8 308 76-440 48-384 (386)
138 1qgn_A Protein (cystathionine 99.9 7.3E-26 2.5E-30 225.2 25.9 310 74-441 108-443 (445)
139 1ibj_A CBL, cystathionine beta 99.9 4E-27 1.4E-31 236.1 16.7 346 38-442 89-461 (464)
140 3qhx_A Cystathionine gamma-syn 99.9 1.1E-25 3.8E-30 221.5 26.7 309 74-436 60-391 (392)
141 2a7v_A Serine hydroxymethyltra 99.9 2.1E-26 7.3E-31 230.8 21.7 353 39-442 55-440 (490)
142 3rq1_A Aminotransferase class 99.9 2.4E-26 8.1E-31 228.5 21.7 337 37-442 37-414 (418)
143 2ord_A Acoat, acetylornithine 99.9 2.3E-25 7.9E-30 219.8 28.2 319 48-441 54-395 (397)
144 3ppl_A Aspartate aminotransfer 99.9 1.2E-26 4.2E-31 231.3 18.4 347 37-443 32-420 (427)
145 2po3_A 4-dehydrase; external a 99.9 2.3E-25 7.9E-30 221.8 27.2 339 51-443 30-386 (424)
146 3ihj_A Alanine aminotransferas 99.9 9.7E-26 3.3E-30 228.6 24.7 339 52-443 103-493 (498)
147 3ruy_A Ornithine aminotransfer 99.9 1.7E-25 5.9E-30 220.3 25.9 320 49-440 51-391 (392)
148 1uu1_A Histidinol-phosphate am 99.9 4.7E-26 1.6E-30 219.6 20.8 306 38-439 19-334 (335)
149 2c81_A Glutamine-2-deoxy-scyll 99.9 3.4E-25 1.2E-29 220.1 27.3 352 49-442 12-413 (418)
150 2oga_A Transaminase; PLP-depen 99.9 2.8E-25 9.5E-30 219.4 26.2 334 52-442 43-395 (399)
151 2x5f_A Aspartate_tyrosine_phen 99.9 2.1E-26 7.3E-31 229.7 17.9 338 38-442 47-428 (430)
152 1s0a_A Adenosylmethionine-8-am 99.9 4.9E-25 1.7E-29 219.7 27.4 342 49-442 58-423 (429)
153 1n8p_A Cystathionine gamma-lya 99.9 1.1E-25 3.8E-30 221.6 22.3 309 76-440 51-392 (393)
154 3ri6_A O-acetylhomoserine sulf 99.9 3.5E-25 1.2E-29 219.7 25.8 322 74-440 76-429 (430)
155 3n0l_A Serine hydroxymethyltra 99.9 1.7E-26 5.9E-31 229.2 16.4 347 39-443 26-389 (417)
156 1o69_A Aminotransferase; struc 99.9 4.6E-25 1.6E-29 217.5 24.8 344 53-444 12-388 (394)
157 3acz_A Methionine gamma-lyase; 99.9 1.4E-24 4.7E-29 213.6 28.1 304 74-437 53-387 (389)
158 3ndn_A O-succinylhomoserine su 99.9 4.8E-25 1.7E-29 218.1 24.9 310 74-440 75-413 (414)
159 3t18_A Aminotransferase class 99.9 9.4E-26 3.2E-30 223.8 19.6 335 37-439 36-410 (413)
160 3cog_A Cystathionine gamma-lya 99.9 5.5E-25 1.9E-29 217.3 24.2 306 78-441 65-400 (403)
161 3d6k_A Putative aminotransfera 99.9 9.9E-26 3.4E-30 224.3 18.6 351 39-442 33-417 (422)
162 3ju7_A Putative PLP-dependent 99.9 7.4E-25 2.5E-29 214.4 24.5 351 41-442 5-374 (377)
163 1sff_A 4-aminobutyrate aminotr 99.9 2.4E-24 8.1E-29 214.5 28.6 337 48-442 55-423 (426)
164 1c4k_A Protein (ornithine deca 99.9 1.2E-25 4E-30 235.1 19.6 322 80-442 173-565 (730)
165 3nyt_A Aminotransferase WBPE; 99.9 1.2E-24 4E-29 212.5 24.8 334 51-440 14-361 (367)
166 1z7d_A Ornithine aminotransfer 99.9 8.9E-24 3E-28 210.8 29.9 327 48-442 79-428 (433)
167 2pb2_A Acetylornithine/succiny 99.9 1.9E-24 6.5E-29 214.8 24.8 325 47-442 70-417 (420)
168 2vyc_A Biodegradative arginine 99.9 5.8E-25 2E-29 231.9 22.1 313 78-442 203-604 (755)
169 2ay1_A Aroat, aromatic amino a 99.9 5.6E-25 1.9E-29 216.7 20.2 334 37-439 25-392 (394)
170 2aeu_A Hypothetical protein MJ 99.9 4.9E-25 1.7E-29 215.6 19.6 333 26-443 15-371 (374)
171 7aat_A Aspartate aminotransfer 99.9 4.1E-25 1.4E-29 218.3 19.0 344 26-440 15-400 (401)
172 3b8x_A WBDK, pyridoxamine 5-ph 99.9 8.3E-24 2.8E-28 208.2 28.0 340 48-436 10-389 (390)
173 3gbx_A Serine hydroxymethyltra 99.9 2.7E-25 9.4E-30 220.7 17.3 339 48-443 39-396 (420)
174 3b1d_A Betac-S lyase; HET: PLP 99.9 1.1E-27 3.8E-32 236.0 0.0 336 39-441 32-391 (392)
175 3ecd_A Serine hydroxymethyltra 99.9 3.4E-25 1.1E-29 220.4 17.9 348 40-443 34-397 (425)
176 4f4e_A Aromatic-amino-acid ami 99.9 1.4E-24 4.9E-29 215.8 21.8 335 37-440 48-419 (420)
177 3nx3_A Acoat, acetylornithine 99.9 8.9E-24 3E-28 208.3 27.1 325 48-442 50-394 (395)
178 2oat_A Ornithine aminotransfer 99.9 8.8E-24 3E-28 211.1 27.3 324 49-442 91-438 (439)
179 4adb_A Succinylornithine trans 99.9 5.1E-24 1.7E-28 210.7 25.3 326 48-442 53-399 (406)
180 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 9.7E-24 3.3E-28 210.9 26.7 356 38-442 31-435 (437)
181 2ez2_A Beta-tyrosinase, tyrosi 99.9 9.5E-24 3.2E-28 212.1 26.5 380 12-443 7-431 (456)
182 3fsl_A Aromatic-amino-acid ami 99.9 1.2E-24 4.1E-29 214.5 19.3 334 37-439 25-396 (397)
183 3f6t_A Aspartate aminotransfer 99.9 1.6E-24 5.4E-29 221.5 19.9 359 40-442 105-524 (533)
184 3h7f_A Serine hydroxymethyltra 99.9 6.8E-25 2.3E-29 219.8 16.9 349 39-443 46-414 (447)
185 3meb_A Aspartate aminotransfer 99.9 3.4E-24 1.2E-28 214.8 21.4 353 22-441 32-442 (448)
186 1ax4_A Tryptophanase; tryptoph 99.9 1.5E-24 5.1E-29 218.6 18.2 387 13-442 9-440 (467)
187 2q7w_A Aspartate aminotransfer 99.9 8.9E-25 3E-29 215.4 15.9 334 37-439 25-395 (396)
188 1ajs_A Aspartate aminotransfer 99.9 2.3E-24 8E-29 213.6 19.0 338 37-442 29-410 (412)
189 2cjg_A L-lysine-epsilon aminot 99.9 4.5E-23 1.5E-27 206.7 28.3 343 48-442 68-447 (449)
190 3a8u_X Omega-amino acid--pyruv 99.9 9E-24 3.1E-28 211.9 22.8 354 47-442 63-446 (449)
191 3dxv_A Alpha-amino-epsilon-cap 99.9 3.1E-23 1.1E-27 207.3 26.7 339 49-443 58-425 (439)
192 2ctz_A O-acetyl-L-homoserine s 99.9 1.3E-23 4.4E-28 208.8 23.4 321 75-440 53-420 (421)
193 2eo5_A 419AA long hypothetical 99.9 6.1E-23 2.1E-27 203.9 28.0 327 48-442 56-417 (419)
194 3tfu_A Adenosylmethionine-8-am 99.9 1.5E-23 5.1E-28 210.4 22.9 340 47-442 88-452 (457)
195 1yaa_A Aspartate aminotransfer 99.9 4.7E-24 1.6E-28 211.5 18.2 342 28-442 18-410 (412)
196 3nmy_A Xometc, cystathionine g 99.9 2.9E-23 1E-27 204.3 23.7 309 74-436 61-396 (400)
197 3i4j_A Aminotransferase, class 99.9 8.2E-23 2.8E-27 203.7 26.5 358 47-442 42-427 (430)
198 3n5m_A Adenosylmethionine-8-am 99.9 1.2E-22 4.2E-27 203.8 27.6 357 47-442 62-451 (452)
199 3bwn_A AT1G70560, L-tryptophan 99.9 5.8E-25 2E-29 216.4 10.0 329 37-442 21-386 (391)
200 3lws_A Aromatic amino acid bet 99.9 2.1E-24 7E-29 209.8 13.6 297 76-440 43-356 (357)
201 4ffc_A 4-aminobutyrate aminotr 99.9 3.9E-22 1.3E-26 200.0 29.5 341 48-442 78-448 (453)
202 3dod_A Adenosylmethionine-8-am 99.9 4.1E-22 1.4E-26 199.7 27.8 353 47-442 57-442 (448)
203 4a6r_A Omega transaminase; tra 99.9 2E-22 7E-27 202.5 24.6 349 47-442 63-448 (459)
204 3pj0_A LMO0305 protein; struct 99.9 8.8E-24 3E-28 205.4 14.0 314 52-439 28-358 (359)
205 3gju_A Putative aminotransfera 99.9 6.3E-22 2.2E-26 199.0 27.4 357 47-442 64-455 (460)
206 1zod_A DGD, 2,2-dialkylglycine 99.9 9.6E-23 3.3E-27 203.4 21.3 345 49-442 58-431 (433)
207 3oks_A 4-aminobutyrate transam 99.9 1.3E-21 4.6E-26 196.0 29.5 345 48-442 75-450 (451)
208 3hmu_A Aminotransferase, class 99.9 3.7E-22 1.3E-26 201.0 25.3 350 47-442 68-451 (472)
209 2oqx_A Tryptophanase; lyase, p 99.9 1.7E-23 6E-28 210.8 15.1 382 13-443 7-442 (467)
210 3jzl_A Putative cystathionine 99.9 1.3E-22 4.5E-27 199.5 20.0 286 53-383 32-338 (409)
211 4eu1_A Mitochondrial aspartate 99.9 1.3E-22 4.5E-27 200.9 18.9 331 37-440 40-408 (409)
212 3l44_A Glutamate-1-semialdehyd 99.9 9.9E-22 3.4E-26 196.1 25.0 326 48-442 69-429 (434)
213 3i5t_A Aminotransferase; pyrid 99.9 1.4E-21 4.9E-26 196.9 26.3 354 47-442 67-453 (476)
214 3i16_A Aluminum resistance pro 99.9 2.4E-22 8.3E-27 198.3 19.8 259 81-382 74-354 (427)
215 3k7y_A Aspartate aminotransfer 99.9 4.7E-22 1.6E-26 195.9 21.7 344 27-442 17-404 (405)
216 2zy4_A L-aspartate beta-decarb 99.9 9.4E-23 3.2E-27 208.4 16.4 358 40-442 106-521 (546)
217 3fq8_A Glutamate-1-semialdehyd 99.9 4.8E-21 1.6E-25 190.7 25.1 329 48-442 66-426 (427)
218 3bc8_A O-phosphoseryl-tRNA(SEC 99.9 2.1E-20 7E-25 183.2 29.0 336 69-443 87-443 (450)
219 2hox_A ALLIIN lyase 1; cystein 99.9 4.6E-23 1.6E-27 205.1 10.4 335 37-442 55-424 (427)
220 3hvy_A Cystathionine beta-lyas 99.9 9.6E-22 3.3E-26 194.0 19.4 303 27-382 29-354 (427)
221 2epj_A Glutamate-1-semialdehyd 99.9 2.8E-21 9.4E-26 192.9 23.0 337 37-442 55-430 (434)
222 3k28_A Glutamate-1-semialdehyd 99.9 8.7E-21 3E-25 189.0 26.0 325 48-442 67-426 (429)
223 3n75_A LDC, lysine decarboxyla 99.9 2.1E-21 7.3E-26 201.3 21.6 311 77-442 192-559 (715)
224 2cy8_A D-phgat, D-phenylglycin 99.9 9.4E-21 3.2E-25 190.1 25.7 338 37-442 56-434 (453)
225 1ohv_A 4-aminobutyrate aminotr 99.9 5.4E-21 1.8E-25 192.5 22.4 341 48-442 77-470 (472)
226 4e77_A Glutamate-1-semialdehyd 99.9 4.4E-20 1.5E-24 183.9 28.6 327 49-442 68-428 (429)
227 3hl2_A O-phosphoseryl-tRNA(SEC 99.9 3.9E-20 1.3E-24 178.6 24.6 317 85-444 122-462 (501)
228 2e7u_A Glutamate-1-semialdehyd 99.9 2.9E-20 9.8E-25 184.9 23.3 335 36-439 50-423 (424)
229 3ht4_A Aluminum resistance pro 99.9 5.9E-21 2E-25 189.3 16.5 259 80-383 65-344 (431)
230 4h51_A Aspartate aminotransfer 99.9 3.2E-20 1.1E-24 182.9 21.3 351 28-443 34-417 (420)
231 3ou5_A Serine hydroxymethyltra 99.9 3.4E-20 1.2E-24 178.2 20.0 352 39-441 55-439 (490)
232 4ao9_A Beta-phenylalanine amin 99.8 1E-18 3.4E-23 173.0 21.6 327 48-442 101-445 (454)
233 4atq_A 4-aminobutyrate transam 99.8 1.4E-17 4.8E-22 165.5 28.2 342 47-442 77-454 (456)
234 4e3q_A Pyruvate transaminase; 99.8 1.9E-16 6.6E-21 157.9 26.7 353 48-442 81-467 (473)
235 2yky_A Beta-transaminase; tran 99.6 5.9E-20 2E-24 183.1 0.0 329 49-442 115-459 (465)
236 4a0g_A Adenosylmethionine-8-am 99.6 3.3E-15 1.1E-19 158.7 19.5 354 47-443 393-828 (831)
237 4g81_D Putative hexonate dehyd 66.0 24 0.00084 31.2 8.6 99 92-206 4-102 (255)
238 1tks_A 3,4-dihydroxy-2-butanon 55.9 18 0.00061 30.8 5.3 37 188-225 157-193 (204)
239 3ezx_A MMCP 1, monomethylamine 49.2 1.1E+02 0.0038 26.0 9.7 130 82-229 43-185 (215)
240 1y80_A Predicted cobalamin bin 46.2 1.2E+02 0.0039 25.6 9.3 103 130-250 88-197 (210)
241 4fc7_A Peroxisomal 2,4-dienoyl 41.9 1.2E+02 0.0041 26.7 9.1 69 128-202 49-117 (277)
242 1vhx_A Putative holliday junct 41.0 76 0.0026 25.4 6.8 53 174-231 44-101 (150)
243 4egf_A L-xylulose reductase; s 40.8 1.2E+02 0.0042 26.4 9.0 94 92-204 15-112 (266)
244 3g1w_A Sugar ABC transporter; 40.3 1.3E+02 0.0044 26.5 9.2 76 140-228 19-94 (305)
245 3gi1_A LBP, laminin-binding pr 39.9 1.4E+02 0.0049 26.6 9.3 76 129-227 178-258 (286)
246 3m9w_A D-xylose-binding peripl 39.3 99 0.0034 27.5 8.3 78 137-228 14-91 (313)
247 3l6u_A ABC-type sugar transpor 39.3 88 0.003 27.4 7.9 76 140-229 23-98 (293)
248 3jy6_A Transcriptional regulat 38.9 1E+02 0.0035 26.8 8.2 72 140-228 22-93 (276)
249 4a1f_A DNAB helicase, replicat 38.5 75 0.0026 29.4 7.2 14 129-142 73-86 (338)
250 3kts_A Glycerol uptake operon 38.4 31 0.0011 29.1 4.1 50 174-234 19-69 (192)
251 3sr3_A Microcin immunity prote 38.2 2E+02 0.0069 26.4 10.2 77 126-208 9-97 (336)
252 3dm5_A SRP54, signal recogniti 36.6 2.9E+02 0.01 26.5 14.6 26 415-440 398-423 (443)
253 1x60_A Sporulation-specific N- 36.0 73 0.0025 21.9 5.3 50 369-438 19-68 (79)
254 3mio_A DHBP synthase, 3,4-dihy 35.8 66 0.0023 27.3 5.8 37 188-225 156-193 (206)
255 4fn4_A Short chain dehydrogena 35.7 1.2E+02 0.004 26.7 7.8 56 99-163 7-63 (254)
256 2yxb_A Coenzyme B12-dependent 35.5 1.7E+02 0.0059 23.4 8.7 84 131-229 19-108 (161)
257 3hh8_A Metal ABC transporter s 35.4 1.2E+02 0.0041 27.3 8.0 75 131-225 184-259 (294)
258 1snn_A DHBP synthase, 3,4-dihy 35.3 58 0.002 28.1 5.4 36 188-225 176-211 (227)
259 1uta_A FTSN, MSGA, cell divisi 35.2 57 0.0019 22.7 4.6 50 369-438 19-68 (81)
260 1g57_A DHBP synthase, 3,4-dihy 34.3 68 0.0023 27.5 5.7 36 188-225 165-200 (217)
261 3v7e_A Ribosome-associated pro 34.2 91 0.0031 21.9 5.6 45 174-227 16-60 (82)
262 3tb6_A Arabinose metabolism tr 33.9 1.5E+02 0.0051 25.9 8.5 79 139-228 29-107 (298)
263 3tla_A MCCF; serine protease, 33.6 2.5E+02 0.0085 26.2 10.1 77 126-208 39-127 (371)
264 4h1h_A LMO1638 protein; MCCF-l 33.4 2.7E+02 0.0094 25.3 10.3 77 126-208 8-96 (327)
265 4ibo_A Gluconate dehydrogenase 33.4 1.8E+02 0.0062 25.4 8.9 95 93-204 22-117 (271)
266 3tfo_A Putative 3-oxoacyl-(acy 33.3 2.1E+02 0.0072 24.9 9.3 91 100-205 5-96 (264)
267 4iin_A 3-ketoacyl-acyl carrier 32.8 1.9E+02 0.0064 25.2 8.9 93 99-205 29-122 (271)
268 3is3_A 17BETA-hydroxysteroid d 32.7 1.7E+02 0.0058 25.5 8.6 92 99-205 18-111 (270)
269 4fgs_A Probable dehydrogenase 32.4 1.2E+02 0.004 27.0 7.3 90 99-206 29-119 (273)
270 3h7a_A Short chain dehydrogena 31.6 1.9E+02 0.0064 24.9 8.6 70 128-205 29-98 (252)
271 8abp_A L-arabinose-binding pro 31.4 1.4E+02 0.005 26.1 8.0 73 140-227 17-89 (306)
272 3uug_A Multiple sugar-binding 31.1 1.2E+02 0.004 27.2 7.4 77 138-228 16-92 (330)
273 3k4h_A Putative transcriptiona 30.7 2.3E+02 0.0078 24.5 9.2 73 140-229 28-101 (292)
274 3rot_A ABC sugar transporter, 30.3 1.6E+02 0.0056 25.8 8.2 77 140-228 18-94 (297)
275 1ccw_A Protein (glutamate muta 30.2 1.9E+02 0.0065 22.4 8.1 97 139-250 15-119 (137)
276 4dmm_A 3-oxoacyl-[acyl-carrier 30.1 2.2E+02 0.0074 24.8 8.8 91 99-204 28-120 (269)
277 3r1i_A Short-chain type dehydr 29.2 2.1E+02 0.0072 25.1 8.6 71 128-205 54-124 (276)
278 3v2g_A 3-oxoacyl-[acyl-carrier 29.1 2.4E+02 0.0083 24.6 9.0 70 128-204 53-123 (271)
279 3dbi_A Sugar-binding transcrip 28.7 1.8E+02 0.0062 26.1 8.3 74 140-228 78-151 (338)
280 3hcw_A Maltose operon transcri 28.5 2.3E+02 0.0078 24.8 8.8 73 139-228 26-99 (295)
281 4f6o_A Metacaspase-1; rossmann 28.5 83 0.0028 29.2 5.7 53 82-140 77-138 (350)
282 3osu_A 3-oxoacyl-[acyl-carrier 28.4 2.5E+02 0.0085 23.9 8.8 70 128-204 26-96 (246)
283 2dri_A D-ribose-binding protei 28.0 2.3E+02 0.0077 24.4 8.6 75 140-228 16-90 (271)
284 3kl4_A SRP54, signal recogniti 28.0 4E+02 0.014 25.4 14.0 26 415-440 401-426 (433)
285 3gk3_A Acetoacetyl-COA reducta 28.0 2.6E+02 0.0089 24.2 9.0 92 99-204 25-117 (269)
286 3tjr_A Short chain dehydrogena 27.3 2.1E+02 0.0073 25.4 8.4 71 128-205 53-123 (301)
287 3lyl_A 3-oxoacyl-(acyl-carrier 26.9 2.9E+02 0.0098 23.4 9.1 71 128-205 27-97 (247)
288 3l49_A ABC sugar (ribose) tran 26.9 1.2E+02 0.0043 26.3 6.7 74 141-228 21-94 (291)
289 2o1e_A YCDH; alpha-beta protei 26.8 1.8E+02 0.0063 26.3 7.8 76 129-224 189-265 (312)
290 3h5o_A Transcriptional regulat 26.6 3.4E+02 0.012 24.2 9.9 75 138-228 75-149 (339)
291 3io5_A Recombination and repai 26.4 2.5E+02 0.0086 25.7 8.4 86 129-227 57-169 (333)
292 3rkr_A Short chain oxidoreduct 26.4 3.1E+02 0.011 23.5 9.2 87 99-200 29-116 (262)
293 4gqr_A Pancreatic alpha-amylas 26.1 36 0.0012 33.0 3.0 30 199-229 69-98 (496)
294 4e5s_A MCCFLIKE protein (BA_56 25.9 3.7E+02 0.013 24.5 9.7 77 126-208 8-96 (331)
295 3huu_A Transcription regulator 25.6 2.4E+02 0.0083 24.7 8.4 73 140-229 42-115 (305)
296 3oid_A Enoyl-[acyl-carrier-pro 25.4 2.9E+02 0.01 23.7 8.8 70 128-204 26-96 (258)
297 2ioy_A Periplasmic sugar-bindi 25.0 1.8E+02 0.0063 25.2 7.4 75 140-228 16-90 (283)
298 3h75_A Periplasmic sugar-bindi 24.9 1.8E+02 0.0063 26.2 7.6 77 140-229 19-95 (350)
299 3brq_A HTH-type transcriptiona 24.7 3.2E+02 0.011 23.5 9.1 72 140-228 36-109 (296)
300 3ijr_A Oxidoreductase, short c 24.6 2.6E+02 0.009 24.6 8.4 66 128-199 69-134 (291)
301 3l77_A Short-chain alcohol deh 24.2 2E+02 0.0068 24.2 7.3 72 128-205 24-95 (235)
302 3ksu_A 3-oxoacyl-acyl carrier 24.0 3.5E+02 0.012 23.3 10.7 92 99-205 11-106 (262)
303 3u9l_A 3-oxoacyl-[acyl-carrier 23.8 2.6E+02 0.0089 25.2 8.3 73 127-205 26-102 (324)
304 3rjz_A N-type ATP pyrophosphat 23.7 2.8E+02 0.0097 23.9 8.0 98 100-221 7-117 (237)
305 3o74_A Fructose transport syst 23.6 1.8E+02 0.0061 24.9 7.0 74 140-228 17-90 (272)
306 3gv0_A Transcriptional regulat 23.5 1.8E+02 0.0061 25.4 7.0 75 138-228 23-97 (288)
307 1pq4_A Periplasmic binding pro 23.3 3.9E+02 0.013 23.7 9.7 79 129-227 189-267 (291)
308 3pk0_A Short-chain dehydrogena 23.3 2.3E+02 0.0078 24.5 7.6 14 189-202 87-100 (262)
309 3rih_A Short chain dehydrogena 23.0 2.5E+02 0.0085 24.9 7.9 92 99-205 41-134 (293)
310 3gbv_A Putative LACI-family tr 22.7 2.7E+02 0.0093 24.1 8.2 78 140-228 24-102 (304)
311 3nvt_A 3-deoxy-D-arabino-heptu 22.3 68 0.0023 30.3 3.9 27 207-234 298-324 (385)
312 1xvl_A Mn transporter, MNTC pr 22.2 3.9E+02 0.013 24.2 9.0 76 130-225 204-280 (321)
313 1k4i_A 3,4-dihydroxy-2-butanon 22.2 1.2E+02 0.004 26.3 5.0 37 188-226 165-212 (233)
314 3sju_A Keto reductase; short-c 22.2 3.9E+02 0.013 23.2 9.7 72 128-206 46-117 (279)
315 3d8u_A PURR transcriptional re 22.2 2E+02 0.0069 24.6 7.1 73 140-228 18-90 (275)
316 3ftp_A 3-oxoacyl-[acyl-carrier 21.7 2.5E+02 0.0087 24.4 7.6 91 99-204 28-119 (270)
317 3pgx_A Carveol dehydrogenase; 21.6 3.8E+02 0.013 23.2 8.8 12 425-436 247-258 (280)
318 3mfq_A TROA, high-affinity zin 21.4 82 0.0028 28.2 4.2 81 131-227 164-245 (282)
319 4gs5_A Acyl-COA synthetase (AM 21.4 3.7E+02 0.013 24.5 9.0 76 83-162 25-110 (358)
320 3gdg_A Probable NADP-dependent 21.2 2.9E+02 0.01 23.7 7.9 71 128-204 44-115 (267)
321 1iv0_A Hypothetical protein; r 21.2 2.3E+02 0.008 20.6 5.9 55 171-231 37-96 (98)
322 3imf_A Short chain dehydrogena 21.1 2.7E+02 0.0093 23.9 7.6 13 189-201 82-94 (257)
323 3ksm_A ABC-type sugar transpor 20.9 2.3E+02 0.0078 24.2 7.1 78 138-228 13-92 (276)
324 3keo_A Redox-sensing transcrip 20.8 2E+02 0.0068 24.5 6.2 114 82-234 68-185 (212)
325 3egc_A Putative ribose operon 20.8 1.1E+02 0.0038 26.8 5.0 73 140-228 23-95 (291)
326 1gud_A ALBP, D-allose-binding 20.6 3E+02 0.01 23.8 7.9 76 140-228 16-92 (288)
327 2fn9_A Ribose ABC transporter, 20.4 2.7E+02 0.0092 24.0 7.6 75 140-228 17-91 (290)
328 1u83_A Phosphosulfolactate syn 20.4 4.2E+02 0.014 23.5 8.3 106 85-228 82-193 (276)
329 3dfz_A SIRC, precorrin-2 dehyd 20.4 3.6E+02 0.012 23.0 7.9 96 94-228 28-123 (223)
330 2rgy_A Transcriptional regulat 20.4 2.3E+02 0.008 24.6 7.1 73 140-228 23-98 (290)
331 1lwj_A 4-alpha-glucanotransfer 20.3 64 0.0022 30.9 3.4 72 138-229 20-91 (441)
332 2i2x_B MTAC, methyltransferase 20.3 4.2E+02 0.015 22.9 11.4 86 130-230 123-213 (258)
333 1g94_A Alpha-amylase; beta-alp 20.3 55 0.0019 31.5 2.9 30 199-229 57-86 (448)
334 3cx3_A Lipoprotein; zinc-bindi 20.3 1.7E+02 0.0059 26.0 6.1 80 129-227 176-256 (284)
335 3lf2_A Short chain oxidoreduct 20.3 3.5E+02 0.012 23.2 8.2 17 189-205 86-102 (265)
336 3ujp_A Mn transporter subunit; 20.2 3.2E+02 0.011 24.6 7.9 75 130-224 190-265 (307)
337 3bbl_A Regulatory protein of L 20.2 2.9E+02 0.01 23.9 7.8 74 139-228 22-95 (287)
338 3kjx_A Transcriptional regulat 20.1 3.4E+02 0.012 24.3 8.4 74 138-227 81-154 (344)
339 3ezl_A Acetoacetyl-COA reducta 20.0 3.7E+02 0.013 22.8 8.2 91 99-204 13-105 (256)
No 1
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=2.1e-39 Score=320.88 Aligned_cols=380 Identities=18% Similarity=0.273 Sum_probs=292.1
Q ss_pred CCCHHHHHhhhccCCC-----CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHHHHHHhHhC
Q 012991 23 CISEAEIRDEFSHHQH-----GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD---FYFNSLRKGILESRAAVKDLIN 94 (452)
Q Consensus 23 ~~~~~~ir~~~~~~~~-----~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~ 94 (452)
.++++.+|+.||.... +++||+.+..++.|+.+.+++.+.+.....+++. .+.+...+...+++++++++++
T Consensus 2 ~~~~~~~r~~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 81 (406)
T 1kmj_A 2 IFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 81 (406)
T ss_dssp CCCHHHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHhCcccccccCCCceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 4678899999997543 5899999999999999999999988765444432 2345567789999999999999
Q ss_pred CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-
Q 012991 95 ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI- 173 (452)
Q Consensus 95 ~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~- 173 (452)
.++++++++|+|+|+|+.+++.++.+. .+++||+|+++.++|++....+..+++..|.+++.++. +.++.+
T Consensus 82 ~~~~~~v~~~~g~t~a~~~~~~~~~~~----~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~d 153 (406)
T 1kmj_A 82 ARSAEELVFVRGTTEGINLVANSWGNS----NVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL----NPDGTLQ 153 (406)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHTHHH----HCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB----CTTSCBC
T ss_pred CCCCCeEEEeCChhHHHHHHHHHhhhh----cCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEec----CCCCCcC
Confidence 832589999999999999999976210 04789999999999999887877767778999999954 333334
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcc
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHK 253 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K 253 (452)
+++|++++ .+++++|++++++||||.+.|+++|.++|++||+ ++|+|++|+.|..++++...++|++++|+||
T Consensus 154 ~~~l~~~l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K 226 (406)
T 1kmj_A 154 LETLPTLF------DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGA-KVLVDGAQAVMHHPVDVQALDCDFYVFSGHK 226 (406)
T ss_dssp GGGHHHHC------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTC-EEEEECTTTTTTSCCCHHHHTCSEEEEEGGG
T ss_pred HHHHHHHh------ccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCC-EEEEEchhhcCCCCCcccccCCCEEEEEchh
Confidence 78899988 5689999999999999999999999999999999 7999999999887777666689999999999
Q ss_pred cCcCCCCcEEEEEecCccccCCCCCceeccCCCCc--------------ccccccccccCccccccHHHHHHHHHHhhcC
Q 012991 254 WFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGL--------------PIESAWIGTRDYSAQLVIPSAVTFVSRFEGG 319 (452)
Q Consensus 254 ~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g 319 (452)
+ +|+.|+|++++++++++. + .+.. .++.. ....+..++++....+++.++++++.+. +
T Consensus 227 ~-~g~~G~G~~~~~~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~ 298 (406)
T 1kmj_A 227 L-YGPTGIGILYVKEALLQE-M-PPWE---GGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSAL--G 298 (406)
T ss_dssp T-TSCTTCEEEEECHHHHHH-C-CCSS---CSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH--C
T ss_pred c-cCCCCcEEEEEeHHHHhh-c-CCcc---cCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHc--C
Confidence 6 588889999999887765 2 2221 11110 0011234566766666676778887754 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 320 IDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
++.++++.+++++++.+.|.+++++++..+. ..++++.+.++ +.+..++.+.|.+ .||.+..+..+...
T Consensus 299 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~g~~~~~~-- 367 (406)
T 1kmj_A 299 LNNIAEYEQNLMHYALSQLESVPDLTLYGPQ-NRLGVIAFNLG-------KHHAYDVGSFLDN-YGIAVRTGHHCAMP-- 367 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEEESCT-TCCSEEEEEET-------TCCHHHHHHHHHH-TTEECEEECTTCHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-CcCCEEEEEEC-------CCCHHHHHHHHhh-CCcEEEeccccchH--
Confidence 8999999999999999999887777766553 23667777765 3456778888866 49999765432100
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+. ...++++|++++.++|++|+++++++|+++++.
T Consensus 368 -----~~~~-~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 368 -----LMAY-YNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp -----HHHH-TTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHh-cCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 0000 012479999999999999999999999998753
No 2
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-39 Score=322.74 Aligned_cols=371 Identities=17% Similarity=0.148 Sum_probs=289.5
Q ss_pred CCHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
-+++.+|++||...++.+|||.++.++.|+.+.+++.+.+.....+++.. ++....+..+++++++++++|++ ++++
T Consensus 11 ~~~~~~r~~fp~~~~~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v 89 (406)
T 3cai_A 11 YDVARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNAD-PGGV 89 (406)
T ss_dssp CCHHHHHHTCTTTTSSCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGE
T ss_pred ccHHHHHHhhhhcCCCeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-CCeE
Confidence 46789999999886679999999988999999999999887543344332 23345678899999999999995 7899
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
++|+|+|+++.+++.++.+ .+++||+|+++.++|+++...+..++++.|.+++.++++. +++.+ +++|++.
T Consensus 90 ~~~~g~t~al~~~~~~l~~-----~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~---~~~~~d~~~l~~~ 161 (406)
T 3cai_A 90 VLGADRAVLLSLLAEASSS-----RAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI---ETGELPTWQWESL 161 (406)
T ss_dssp EEESCHHHHHHHHHHHTGG-----GGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT---TTCCCCGGGHHHH
T ss_pred EEeCChHHHHHHHHHHHhh-----ccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc---ccCCcCHHHHHHH
Confidence 9999999999999987632 1478999999999999998888776676799999995420 23334 7899998
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+ ++++++|++++++||||.+.|+++|.++|+++|+ ++|+|++|+.|..++++..+++|++++|+||+ +||.
T Consensus 162 l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~-~g~~- 232 (406)
T 3cai_A 162 I------SKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGA-LVVVDHSAAAPYRLLDIRETDADVVTVNAHAW-GGPP- 232 (406)
T ss_dssp C------CTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTC-EEEEECTTTTTTCCCCHHHHCCSEEEEEGGGG-TSCS-
T ss_pred h------CCCceEEEEeCCcCCccccCCHHHHHHHHHHcCC-EEEEEcccccCCCCCCchhcCCCEEEeehhhh-cCCC-
Confidence 8 5689999999999999999999999999999999 79999999998877776667899999999996 6765
Q ss_pred cE-EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC--------------HHHHHH
Q 012991 261 VA-FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG--------------IDGIMQ 325 (452)
Q Consensus 261 ~G-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g--------------~~~~~~ 325 (452)
+| ++++++++++. + .+.. ..++... ...+..++++...+.++.++++++.+. | ++.+++
T Consensus 233 ~G~~~~~~~~~~~~-l-~~~~-~~~~~~~-~~~~~~~t~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~~~~~~~~ 306 (406)
T 3cai_A 233 IGAMVFRDPSVMNS-F-GSVS-TNPYATG-PARLEIGVHQFGLLAGVVASIEYLAAL--DESARGSRRERLAVSMQSADA 306 (406)
T ss_dssp CEEEEESCHHHHHT-S-CCCC-SCTTCCG-GGGGCCSCCCHHHHHHHHHHHHHHHTS--STTCCSSHHHHHHHHHHHHHH
T ss_pred cCeEEEEehHHHhh-c-CCcc-cCCCCCc-cccccCCCccHHHHHHHHHHHHHHHHh--ccccccchhhhhhhhHHHHHH
Confidence 78 99998877664 2 2221 1122221 122335677777777777888887753 4 688899
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecc------cCCCCCC
Q 012991 326 RNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHY------QAPKDDG 399 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~------~~~~~~~ 399 (452)
+.+++++++.+.|.+++++++..+....+++++|.++ +.+..++.+.|.+ .||.+..+. ....
T Consensus 307 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~L~~-~gi~v~~g~~~~~~~~~g~--- 375 (406)
T 3cai_A 307 YLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVH-------KVPADRVVQRLAD-NGILAIANTGSRVLDVLGV--- 375 (406)
T ss_dssp HHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEET-------TBCHHHHHHHHHH-TTEECEECCSCHHHHHHTT---
T ss_pred HHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEEC-------CcCHHHHHHHHHH-CCcEEecCChHHHHHHcCC---
Confidence 9999999999999987777776654334568888875 3457789999976 599997654 1100
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
....+++|++++.+++++|+++++++|+++
T Consensus 376 ----------~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 376 ----------NDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp ----------TTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred ----------CCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 012478999999999999999999999753
No 3
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=1.7e-38 Score=312.92 Aligned_cols=365 Identities=20% Similarity=0.238 Sum_probs=280.3
Q ss_pred CHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHh-cCCchhhhhh-hhHHHHHHHHHHHhHhCCCCCCcEE
Q 012991 25 SEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFL-QQPDDFYFNS-LRKGILESRAAVKDLINADDVGEIS 102 (452)
Q Consensus 25 ~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~i~ 102 (452)
.++++|++|+.. ++++||+.+..++.|+.+.+++.+.+.... .++..+..+. ..+...++++.+++++|++ +++++
T Consensus 3 ~~~~~r~~f~~~-~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~-~~~v~ 80 (390)
T 1elu_A 3 MITPSLHQFPGL-ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTIT 80 (390)
T ss_dssp -------CCGGG-TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEE
T ss_pred chHHHHHhcCCC-CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCC-HHHEE
Confidence 457889999965 678999999999999889999998876542 1222111222 2467899999999999985 67999
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHH
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGI 181 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i 181 (452)
+|+|||+|+.+++.++ .+++||+|+++.++|++...++..+++..|.+++.++.+. .+++.+ +++|++.+
T Consensus 81 ~~~g~t~a~~~~~~~~-------~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~i 151 (390)
T 1elu_A 81 ITDNVTTGCDIVLWGL-------DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAA--TLNQGDAAAVLANHL 151 (390)
T ss_dssp EESSHHHHHHHHHHHS-------CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGG--GSSSSCHHHHHHTTC
T ss_pred EeCChHHHHHHHHhCC-------CCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCC--CCCccchHHHHHHhc
Confidence 9999999999999976 2478999999999999988877666677899999995421 022333 88999888
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHHHHHHHHH----HcCCCEEEEecccccCCccccccccCccEEEEcCcccCcC
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR----DEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~----~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g 257 (452)
.+++++|++++++||||.+.|+++|.++|+ ++|+ ++|+|++|+.|..++++...++|+++.|+|||++|
T Consensus 152 ------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~-~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~ 224 (390)
T 1elu_A 152 ------GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPV-RVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAG 224 (390)
T ss_dssp ------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCC-EEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCC
T ss_pred ------CCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCc-EEEEEcccccCCcCCChhhcCCCEEEccccccccC
Confidence 568999999999999999999999999999 9999 79999999999888777777899999999999899
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCc--------c------cccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGL--------P------IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
+.|+|++++++++++. +.... .|++. + ...+..++++...+.++.++++.+... +.++.+
T Consensus 225 ~~g~G~~~~~~~~~~~-~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~-~~~~~~ 298 (390)
T 1elu_A 225 PAGVGGLYIHGDCLGE-INPTY----VGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQ-GTAEER 298 (390)
T ss_dssp CTTCEEEEECTTTGGG-CCCCS----CCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHH-CCHHHH
T ss_pred CCceEEEEECHHhHhh-cCCcc----ccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 9999999999888775 32211 11100 0 012234666666677777788877653 238999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
+++.+++++++.+.|.+++++++..|....++++++.++ .+.+..++.+.|.+ .||.+..+.
T Consensus 299 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~-~gi~v~~~~----------- 360 (390)
T 1elu_A 299 YQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVD------SPLGHRAIVQKLEE-QRIYLRTIA----------- 360 (390)
T ss_dssp HHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEEC------SSSCHHHHHHHHHH-TTEECEEET-----------
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcC------CCCCHHHHHHHHHH-CCEEEEecC-----------
Confidence 999999999999999987788776543234678888775 24467789999966 599986543
Q ss_pred CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 404 GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.++++|++++.+++++|+++++++|+++
T Consensus 361 --------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 361 --------DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp --------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred --------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 1368999998889999999999999754
No 4
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=100.00 E-value=7.3e-39 Score=323.29 Aligned_cols=362 Identities=16% Similarity=0.179 Sum_probs=282.3
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhh---hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYF---NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
++++|||+++.++.|+.+.+++.+.+..+...+...+. ..+.+..+++++++++++|++ +++|++|+|+|++++++
T Consensus 66 ~~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~al~~~ 144 (465)
T 3e9k_A 66 ENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGAN-EKEIALMNALTVNLHLL 144 (465)
T ss_dssp CBCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCC-GGGEEECSCHHHHHHHH
T ss_pred CCeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCC-cCCEEEECCHHHHHHHH
Confidence 47899999999999998999988887665332222111 133455678999999999996 78999999999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEE--EeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVE--VQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~--~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
+.++.+ ...++++|+++.++|++...++..+++..|.++.. +.+. +.+.++.+ ++++++++++. ++++
T Consensus 145 ~~~~~~-----~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~-~~~~~~~~d~~~l~~~i~~~---~~~~ 215 (465)
T 3e9k_A 145 MLSFFK-----PTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIK-PREGEETLRIEDILEVIEKE---GDSI 215 (465)
T ss_dssp HHHHCC-----CCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEEC-CCTTCSSCCHHHHHHHHHHH---GGGE
T ss_pred HHHhcc-----ccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEe-cCCCCCccCHHHHHHHHHhc---CCCe
Confidence 998842 11345679999999999988888767888877521 1110 33333444 89999999642 2589
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCc-CCCCcEEEEEecCc
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFF-CPPSVAFLYCRKSI 270 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~-g~~G~G~l~~~~~~ 270 (452)
++|++++++|+||.+.|+++|.++|++||+ ++++|++|+.|..++++..+++|++++|+||+++ ||.|+|++++++++
T Consensus 216 ~lv~~~~~~n~tG~~~~l~~i~~la~~~g~-~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~ 294 (465)
T 3e9k_A 216 AVILFSGVHFYTGQHFNIPAITKAGQAKGC-YVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKH 294 (465)
T ss_dssp EEEEEESBCTTTCBBCCHHHHHHHHHHTTC-EEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGG
T ss_pred EEEEEeCcccCcceeecHHHHHHHHHHcCC-EEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHH
Confidence 999999999999999999999999999999 8999999999999999888899999999999985 67778999999988
Q ss_pred cccCCCCCceeccCCCC--------------cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 271 LSSDMHHPVVSHEFGNG--------------LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+.. + .+....+++.. .....+..|+++...+.++.++++.+.+. |++.++++..++++++.+
T Consensus 295 ~~~-~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~--~~~~~~~~~~~~~~~l~~ 370 (465)
T 3e9k_A 295 AHT-I-KPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQA--TMKALRKKSVLLTGYLEY 370 (465)
T ss_dssp TTT-S-CCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHH
T ss_pred Hhh-c-CCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHH
Confidence 775 3 22221111110 11233456789999999999999999876 899999999999999999
Q ss_pred HHHHH----------cCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCC
Q 012991 337 MLANA----------WGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG 404 (452)
Q Consensus 337 ~L~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~ 404 (452)
.|.++ +++++..|.. .++++++|.++ .+..++.+.|.++ ||.+..
T Consensus 371 ~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~--------~~~~~l~~~L~~~-Gi~v~~-------------- 427 (465)
T 3e9k_A 371 LIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS--------VPNKDVFQELEKR-GVVCDK-------------- 427 (465)
T ss_dssp HHHHHCC---------CEEECSCSSGGGBCSCEEEEEC--------CTTCCHHHHHHTT-TEECEE--------------
T ss_pred HHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec--------CCHHHHHHHHHHC-CEEEec--------------
Confidence 99986 6888776642 34788888875 1345788888765 999851
Q ss_pred CCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHHhcc
Q 012991 405 ARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 405 ~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
..++++|+|+ +.++|.+||++++++|+++++..
T Consensus 428 ------~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 428 ------RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp ------ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred ------CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 2247999998 89999999999999999999764
No 5
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=1.2e-37 Score=309.93 Aligned_cols=379 Identities=21% Similarity=0.267 Sum_probs=288.0
Q ss_pred CHHHHHhhhccCCC-----CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCc---hhhhhhhhHHHHHHHHHHHhHhCCC
Q 012991 25 SEAEIRDEFSHHQH-----GVARINNGSFGSCPKSVLADQQKWQLKFLQQPD---DFYFNSLRKGILESRAAVKDLINAD 96 (452)
Q Consensus 25 ~~~~ir~~~~~~~~-----~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~ 96 (452)
-+..+|++||.... .++||+.+.+++.|+.+.+++.+.+.....+++ ..++....+...++++.++++++.+
T Consensus 9 ~~~~~r~~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~ 88 (420)
T 1t3i_A 9 LAATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR 88 (420)
T ss_dssp HHHHHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCccccccCCCceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35889999997533 389999999998899999999998876543433 2233334678899999999999983
Q ss_pred CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HH
Q 012991 97 DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-IN 175 (452)
Q Consensus 97 ~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~ 175 (452)
+++++++|+|||+|+.+++.++.+. .+++|++|+++.++|++....+..++...|.+++.++. ++++.+ ++
T Consensus 89 ~~~~v~~~~g~t~a~~~~~~~~~~~----~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~~~~~~d~~ 160 (420)
T 1t3i_A 89 SPREIVYTRNATEAINLVAYSWGMN----NLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL----DEQESFDLE 160 (420)
T ss_dssp CGGGEEEESSHHHHHHHHHHHTHHH----HCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB----CTTSSBCHH
T ss_pred CCCeEEEcCChHHHHHHHHHHhhhc----ccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEecc----CCCCCcCHH
Confidence 2689999999999999999976210 04789999999999999766666556778999999954 333434 89
Q ss_pred HHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccC
Q 012991 176 EFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWF 255 (452)
Q Consensus 176 ~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l 255 (452)
++++++ .+++++|++++++||+|.+.|+++|.++|++||+ ++|+|++|+.|..+++....++|++++|+|| +
T Consensus 161 ~l~~~l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~di~~~s~sK-~ 232 (420)
T 1t3i_A 161 HFKTLL------SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGA-KVLVDACQSAPHYPLDVQLIDCDWLVASGHK-M 232 (420)
T ss_dssp HHHHHC------CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTC-EEEEECTTTTTTSCCCHHHHTCSEEEEEGGG-T
T ss_pred HHHHhh------CCCceEEEEeCCcccccCcCCHHHHHHHHHHcCC-EEEEEhhhccCCccCchhhcCCCEEEEehhh-h
Confidence 999999 5689999999999999999999999999999999 7999999999887766666789999999999 6
Q ss_pred cCCCCcEEEEEecCccccCCCCCceeccCCCCc-------------ccccccccccCccccccHHHHHHHHHHhhcCHHH
Q 012991 256 FCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGL-------------PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDG 322 (452)
Q Consensus 256 ~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~ 322 (452)
+|+.|+|++++++++++. + .+... ++.. ....+..++++....+++.++++++.+. +++.
T Consensus 233 ~~~~g~G~~~~~~~~~~~-~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~ 305 (420)
T 1t3i_A 233 CAPTGIGFLYGKEEILEA-M-PPFFG---GGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDL--GMEN 305 (420)
T ss_dssp TSCTTCEEEEECHHHHHH-S-CCCSC---STTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH--CHHH
T ss_pred cCCCceEEEEEchHHHhh-c-Cceec---CCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHh--HHHH
Confidence 888889999999887765 2 22211 1100 0011223566666666666678887754 7899
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCcc---cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAWGTSLGSPPE---ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
+.++.+++++++.+.|.+++++++..+.. ..++++++.++ +.+..++.+.|.+ .||.+..+..+...
T Consensus 306 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~~~~~~~~-- 375 (420)
T 1t3i_A 306 IHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA-------GLHASDVATMVDQ-DGIAIRSGHHCTQP-- 375 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET-------TBCHHHHHHHHHT-TTEECBCSCTTCHH--
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEEC-------CCCHHHHHHHHHH-CCeEEeeccccchH--
Confidence 99999999999999999877877765542 23678888775 2456778888866 59999765432100
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.... ...++++|++++.+++++|+++++++|+++++.
T Consensus 376 -----~~~~-~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 376 -----LHRL-FDASGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp -----HHHH-TTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHh-cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 0000 011578999999989999999999999999864
No 6
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=8.7e-38 Score=308.18 Aligned_cols=357 Identities=15% Similarity=0.143 Sum_probs=275.8
Q ss_pred hhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 32 EFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.||.+ .+.+||+++++++.|+.+.+++.+.+.. .+.+...+..+++++++++++|++ ++++++|+|||+|+
T Consensus 2 ~fp~~-~~~~yl~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a~ 72 (392)
T 2z9v_A 2 RYPEH-ADPVITLTAGPVNAYPEVLRGLGRTVLY-------DYDPAFQLLYEKVVDKAQKAMRLS-NKPVILHGEPVLGL 72 (392)
T ss_dssp CCCTT-SCCSEECSSSCCCCCHHHHHHTTSCCCC-------TTSHHHHHHHHHHHHHHHHHTTCS-SCCEEESSCTHHHH
T ss_pred CcccC-CCcceeecCCCcCCCHHHHHHHhccccc-------cccHHHHHHHHHHHHHHHHHhCCC-CCEEEEeCCchHHH
Confidence 46755 4568999999999999999998775421 122345667899999999999996 78999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++ +++||+|++++++|++.. +..+++..|.+++.++++ .++.+ +++|++++++ +++
T Consensus 73 ~~~~~~~--------~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~----~~~ 134 (392)
T 2z9v_A 73 EAAAASL--------ISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVP----YNEAIDPQAVADMLKA----HPE 134 (392)
T ss_dssp HHHHHHH--------CCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECC----TTSCCCHHHHHHHHHH----CTT
T ss_pred HHHHHHh--------cCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCC----CCCCCCHHHHHHHHhc----CCC
Confidence 9999987 478999999999999863 434456679999999653 22334 8999999864 357
Q ss_pred eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc
Q 012991 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~ 270 (452)
+++|++++++||||.+.|+++|.++|+++|+ ++|+|++|+.|..++++..+++|++++|+|||++|+.|+|++++++++
T Consensus 135 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~ 213 (392)
T 2z9v_A 135 ITVVSVCHHDTPSGTINPIDAIGALVSAHGA-YLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERA 213 (392)
T ss_dssp CCEEEEESEEGGGTEECCHHHHHHHHHHTTC-EEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHH
T ss_pred CcEEEEeccCCCCceeccHHHHHHHHHHcCC-eEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHH
Confidence 8999999999999999999999999999999 799999999988877777778999999999998999999999999887
Q ss_pred cccCCCCCce--e-ccCCC-----CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 271 LSSDMHHPVV--S-HEFGN-----GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 271 ~~~~l~~~~~--~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
++. +..... . ..++. .........++++...+.++.++++.+.+. |++.++++.+++++++.+.|.++
T Consensus 214 ~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~~l~~~L~~~- 289 (392)
T 2z9v_A 214 WAK-MKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNE--GPEAVWARHALTAKAMRAGVTAM- 289 (392)
T ss_dssp HHH-HHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHH-hhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHc-
Confidence 654 211000 0 00110 000112234667777777777888887764 78999999999999999999987
Q ss_pred CCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc
Q 012991 343 GTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420 (452)
Q Consensus 343 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 420 (452)
++++..++. ..++++++.++ .+.+..++.+.|.+++||.+..+..+ ..++++|+++
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~~gi~v~~g~~~----------------~~~~~lRi~~ 347 (392)
T 2z9v_A 290 GLSVWAASDSIASPTTTAVRTP------DGVDEKALRQAARARYGVVFSSGRGE----------------TLGKLTRIGH 347 (392)
T ss_dssp TCCBSSSSGGGBCTTEEEEECC------TTCCHHHHHHHHHHHHCEECEECCGG----------------GTTTEEEEEC
T ss_pred CCeeccCCccccCCceEEEECC------CCCCHHHHHHHHHhcCCEEEecCCCC----------------CCCCeEEEeC
Confidence 887766331 24677888886 24567789999976569999765432 2357999996
Q ss_pred cc-cCCHHHHHHHHHHHHHHHhc
Q 012991 421 QV-YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 421 ~~-~~t~~di~~l~~~l~~~~~~ 442 (452)
.. +++.+|+++++++|++++++
T Consensus 348 ~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 348 MGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHH
Confidence 44 78999999999999999864
No 7
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=1.4e-37 Score=305.13 Aligned_cols=366 Identities=17% Similarity=0.225 Sum_probs=279.4
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
++|||+++.++.|+.+.+++.+.+.....+++.. +.+...+..+++++++++++|++ ++++++|+|+|+|+.+++.+
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~~~a~~~~~~~ 79 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEANNLAIIG 79 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSHHHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEECCchHHHHHHHHH
Confidence 4799999999999999999999887655555432 34566788899999999999996 68899999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+.+.+ .++||+|++++++|+++...+..+ .+.|++++.+++ +.++.+ +++|++++ .+++++|++
T Consensus 80 ~~~~~----~~~gd~vi~~~~~~~~~~~~~~~~-~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~~~~~~v~~ 144 (382)
T 4hvk_A 80 YAMRN----ARKGKHILVSAVEHMSVINPAKFL-QKQGFEVEYIPV----GKYGEVDVSFIDQKL------RDDTILVSV 144 (382)
T ss_dssp HHHHH----GGGCCEEEEETTCCHHHHHHHHHH-HHTTCEEEEECB----CTTSCBCHHHHHHHC------CTTEEEEEC
T ss_pred hhhhh----cCCCCEEEECCCCcHHHHHHHHHH-HhcCCEEEEecc----CCCCCcCHHHHHHHh------ccCceEEEE
Confidence 73211 178999999999999998887764 667999999954 444444 89999999 578999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++||||.+.|+++|.++|++||+ +|+|++|+.|..+.+....++|++++|+||+ +|+.|+|+++++++...
T Consensus 145 ~~~~nptG~~~~~~~i~~l~~~~~~--li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~---- 217 (382)
T 4hvk_A 145 QHANNEIGTIQPVEEISEVLAGKAA--LHIDATASVGQIEVDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKL---- 217 (382)
T ss_dssp CSBCTTTCBBCCHHHHHHHHSSSSE--EEEECTTTBTTBCCCHHHHTCSEEEEESGGG-TSCTTCEEEEEETTCCC----
T ss_pred ECCCCCceeeCCHHHHHHHHHHcCE--EEEEhHHhcCCCCCCchhcCCCEEEEeHHHh-cCCCceEEEEEcCccCc----
Confidence 9999999999999999999999998 8999999999888887777899999999995 88889999999887622
Q ss_pred CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc-ccc
Q 012991 277 HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI-CAA 355 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~ 355 (452)
.+.. .+... ......++++...+.++.+++++..+ +++.++++.+++++++.+.|.+++++++..++.. ..+
T Consensus 218 ~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 290 (382)
T 4hvk_A 218 QPVI---LGGGQ-ENGLRSGSENVPSIVGFGKAAEITAM---EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPN 290 (382)
T ss_dssp CCSS---CSSCT-GGGTSCSCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTT
T ss_pred Cccc---ccCCC-cCccccCCcCHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCC
Confidence 1221 11111 12233467777777777777776654 6888999999999999999998878877665532 245
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC----ccceEEecccccCCHHHHHH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI----ITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~iRis~~~~~t~~di~~ 431 (452)
+++|.++ +.+..++.+.|.++ ||.+..+..+...+.. ........+. .++++|++++.++|.+|+++
T Consensus 291 ~~~~~~~-------~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~ 361 (382)
T 4hvk_A 291 NVNVRFS-------YIEGESIVLSLDMA-GIQASTGSACSSKTLQ-PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDR 361 (382)
T ss_dssp EEEEEET-------TCCHHHHHHHHHHT-TCBCBCC--------C-CCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHH
T ss_pred EEEEEEC-------CCCHHHHHHHHHHC-CEEEeeCCccCCCCCc-chHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHH
Confidence 7888775 45677899999764 9999766544221000 0000000000 15799999999999999999
Q ss_pred HHHHHHHHHhccc
Q 012991 432 FRDAVILLVEEGQ 444 (452)
Q Consensus 432 l~~~l~~~~~~~~ 444 (452)
++++|++++++-.
T Consensus 362 ~~~~l~~~~~~~~ 374 (382)
T 4hvk_A 362 LLEVLPGVIERLR 374 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 8
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=3.5e-37 Score=302.56 Aligned_cols=363 Identities=17% Similarity=0.222 Sum_probs=272.2
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
++|||.++.++.|+.|.+++.+.+.....++... .+....+..+++++++++++|++ ++++++|+|||+|+.+++.+
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~ 79 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEANNLAIIG 79 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEESSHHHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEcCchHHHHHHHHHH
Confidence 3799999999999999999999886543444432 23345678899999999999996 68999999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+...+ .++||+|++++++|+++...+.. +...|.+++.+++ +.++.+ +++|++++ .+++++|++
T Consensus 80 l~~~~----~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~~~~~~v~~ 144 (382)
T 4eb5_A 80 YAMRN----ARKGKHILVSAVEHMSVINPAKF-LQKQGFEVEYIPV----GKYGEVDVSFIDQKL------RDDTILVSV 144 (382)
T ss_dssp HHHHH----GGGCCEEEEETTCCHHHHHHHHH-HTTTTCEEEEECB----CTTSCBCHHHHHHHC------CTTEEEEEC
T ss_pred HHhhc----cCCCCEEEECCCcchHHHHHHHH-HHhCCcEEEEecc----CCCCccCHHHHHHHh------cCCCeEEEE
Confidence 73111 16899999999999998777765 3457999999954 333444 89999998 567999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc-cccCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI-LSSDM 275 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~-~~~~l 275 (452)
++++||||.+.|+++|.++|+++|+ + |+|++|+.|..++++..+++|++++|+||+ +|+.|+|+++++++. +..
T Consensus 145 ~~~~nptG~~~~l~~i~~l~~~~~~-~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~~-- 219 (382)
T 4eb5_A 145 QHANNEIGTIQPVEEISEVLAGKAA-L-HIDATASVGQIEVDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQP-- 219 (382)
T ss_dssp CSBCTTTCBBCCHHHHHHHHTTSSE-E-EEECTTTBTTBCCCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTCCCCC--
T ss_pred eccCCCccccCCHHHHHHHHHHCCC-E-EEEcchhcCCcccCccccCCCEEEeehHHh-cCCCceEEEEEccccccCc--
Confidence 9999999999999999999999999 9 999999988777666656789999999996 888899999998874 221
Q ss_pred CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc-cc
Q 012991 276 HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI-CA 354 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~ 354 (452)
.. .+... ......++++...+.++.++++++.+ +++.++++.+++++++.+.|.+++++++..++.. .+
T Consensus 220 ---~~---~~~~~-~~~~~~~~~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 289 (382)
T 4eb5_A 220 ---VI---LGGGQ-ENGLRSGSENVPSIVGFGKAAEITAM---EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLP 289 (382)
T ss_dssp ---SS---CSSCT-GGGTSCSCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCT
T ss_pred ---ee---cCCCc-cccccCCCccHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCC
Confidence 11 11100 11223356666666777777877665 5788899999999999999988777776655422 25
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC----CccceEEecccccCCHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG----IITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~iRis~~~~~t~~di~ 430 (452)
++++|.++ +.+..++.+.|.+ .||.+..+..+...... ........+ ...+++|++++.+++++|++
T Consensus 290 ~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~ 360 (382)
T 4eb5_A 290 NNVNVRFS-------YIEGESIVLSLDM-AGIQASTGSACSSKTLQ-PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVD 360 (382)
T ss_dssp TEEEEEET-------TSCHHHHHHHHHH-HTCBCBCCCGGGTSSCC-CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHH
T ss_pred CEEEEEeC-------CcCHHHHHHHHHH-CCEEEeccccccCCCCc-ccHHHHHcCCChhccCCeEEEECCCCCCHHHHH
Confidence 67888775 3456789999976 59998765432110000 000000001 12579999999889999999
Q ss_pred HHHHHHHHHHhc
Q 012991 431 KFRDAVILLVEE 442 (452)
Q Consensus 431 ~l~~~l~~~~~~ 442 (452)
+++++|++++++
T Consensus 361 ~~~~~l~~~~~~ 372 (382)
T 4eb5_A 361 RLLEVLPGVIER 372 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 9
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=100.00 E-value=2e-36 Score=300.96 Aligned_cols=361 Identities=17% Similarity=0.201 Sum_probs=277.4
Q ss_pred CCHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHHHHHHhHhCCCCCCcE
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD--FYFNSLRKGILESRAAVKDLINADDVGEI 101 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~i 101 (452)
.++..+|++||.. .+.+|||.++.++.|+.+.+++.+.+....+++.. .+.....+..+++++++++++|++ ++++
T Consensus 14 ~~~~~~r~~f~~~-~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v 91 (416)
T 1qz9_A 14 DSLAPLRQQFALP-EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEV 91 (416)
T ss_dssp CTTGGGGGGBCCC-TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSE
T ss_pred chhHHHHHhCCCC-CCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCC-cccE
Confidence 3567889999965 78999999999988888999999887643233322 222234577899999999999995 6899
Q ss_pred EEecChhHHHHHHHHHhhcccccCCC----CCCCE-EEEeCCcchhHHHHHHHHHHhc--CcEEEEEeCCCCCCChHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRF----HRNDT-VLMLHCAFQAVKKSIQAYVTRA--GGSVVEVQLPFPLASEEEII 174 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~----~~g~~-Vl~~~~~~~s~~~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~ 174 (452)
++|+|+|+++..++.++. .+ ++||+ |+++.++|+++..++..+++.. |.+++.++ . +
T Consensus 92 ~~~~g~t~al~~al~~~~------~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~----~------~ 155 (416)
T 1qz9_A 92 VVTDTTSINLFKVLSAAL------RVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVD----S------P 155 (416)
T ss_dssp EECSCHHHHHHHHHHHHH------HHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEES----S------G
T ss_pred EEeCChhHHHHHHHHhhc------ccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeC----c------H
Confidence 999999999988888662 12 67776 5666779998888876656665 89999884 3 4
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCccc
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 254 (452)
++|++++ .+++++|++++++||||.+.|+++|.++|++||+ ++|+|++|+.|..+.++..+++|++++|+||+
T Consensus 156 ~~l~~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~ 228 (416)
T 1qz9_A 156 EELPQAI------DQDTAVVMLTHVNYKTGYMHDMQALTALSHECGA-LAIWDLAHSAGAVPVDLHQAGADYAIGCTYKY 228 (416)
T ss_dssp GGHHHHC------STTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTC-EEEEECTTTTTTSCCCHHHHTCSEEEECSSST
T ss_pred HHHHHHh------CCCceEEEEeccccCcccccCHHHHHHHHHHcCC-EEEEEccccccCcCCChhhcCCCEEEecCccc
Confidence 7788888 5689999999999999999999999999999999 79999999998887776666799999999999
Q ss_pred CcCCCCc-EEEEEecCccccCCCCCceeccCCCC--------c----ccccccccccCccccccHHHHHHHHHHhhcCHH
Q 012991 255 FFCPPSV-AFLYCRKSILSSDMHHPVVSHEFGNG--------L----PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGID 321 (452)
Q Consensus 255 l~g~~G~-G~l~~~~~~~~~~l~~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~ 321 (452)
++++.|+ |++++++++++. + .+....+++.. . .......++++...++++.++++.+.+ .+++
T Consensus 229 l~~g~~~~g~l~~~~~~~~~-l-~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~ 304 (416)
T 1qz9_A 229 LNGGPGSQAFVWVSPQLCDL-V-PQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQ--TDMA 304 (416)
T ss_dssp TCCCTTCCCEEEECTTTTTT-S-CCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTT--SCHH
T ss_pred CCCCCCCeEEEEECHHHHhc-c-CCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHh--cCHH
Confidence 8777777 999999988765 2 22211111110 0 011223456777777777778887763 3889
Q ss_pred HHHHHHHHHHHHHHHHHHHH-c--CCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 322 GIMQRNHEQALKMARMLANA-W--GTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
.++++.+++++++.+.|.++ + ++.+..+.. ..++++++.++ +..++.+.|.++ ||.+..
T Consensus 305 ~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~~-gi~~~~------ 368 (416)
T 1qz9_A 305 SLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP---------EGYAVIQALIDR-GVIGDY------ 368 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT---------THHHHHHHHHTT-TEECEE------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC---------CHHHHHHHHHhC-CcEecc------
Confidence 99999999999999999886 5 777766542 23678888875 256788988765 998742
Q ss_pred CCCCCCCCCCCCCCCccceEEeccc-ccCCHHHHHHHHHHHHHHHhcc
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQ-VYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~l~~~l~~~~~~~ 443 (452)
...+++|++++ .++|++|+++++++|++++++.
T Consensus 369 --------------~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 369 --------------REPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp --------------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred --------------CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 12469999998 4889999999999999998754
No 10
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=100.00 E-value=2.1e-37 Score=305.53 Aligned_cols=363 Identities=14% Similarity=0.124 Sum_probs=276.2
Q ss_pred CHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCC-cEEE
Q 012991 25 SEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG-EISL 103 (452)
Q Consensus 25 ~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~i~~ 103 (452)
+++..+++||.+..+.+|+++.++.+.|+.+.+++.+.+.. .+.....+...++++++++++|++ ++ ++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g~~-~~~~i~~ 75 (393)
T 2huf_A 4 KVTPPAVLREPLVTPNKLLMGPGPSNAPQRVLDAMSRPILG-------HLHPETLKIMDDIKEGVRYLFQTN-NIATFCL 75 (393)
T ss_dssp SSCCCGGGGSCCCCCCCEECSSSCCCCCHHHHHHTTSCCCC-------TTSHHHHHHHHHHHHHHHHHHTCC-CSEEEEE
T ss_pred cccchhhhhcccCCCCeEEecCCCCCCCHHHHHHHHhhhcc-------CCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEE
Confidence 34445668888777777777777777888899988764321 122234677899999999999996 44 8999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|||+|+.+++.++ +++||+|++++++|++.. +..+++..|.+++.++++ .++.+ +++|+++++
T Consensus 76 ~~g~t~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~i~ 141 (393)
T 2huf_A 76 SASGHGGMEATLCNL--------LEDGDVILIGHTGHWGDR--SADMATRYGADVRVVKSK----VGQSLSLDEIRDALL 141 (393)
T ss_dssp SSCHHHHHHHHHHHH--------CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECC----TTCCCCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHH--------hCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEEeCC----CCCCCCHHHHHHHHh
Confidence 999999999999987 478999999999998852 333356789999999753 22334 899999984
Q ss_pred ccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcE
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVA 262 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G 262 (452)
+ .++++|++++++||||.+.|+++|.++|+++|+ ++|+|++++.|..++++..+++|++++|+||+++|+.|+|
T Consensus 142 ~-----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G 215 (393)
T 2huf_A 142 I-----HKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNC-LLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGIT 215 (393)
T ss_dssp H-----HCCSEEEEESEETTTTEECCCTTHHHHHHHTTC-EEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCE
T ss_pred c-----cCCcEEEEEccCCCccccCCHHHHHHHHHHcCC-EEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeE
Confidence 2 178999999999999999999999999999999 7999999999888777777789999999999989999999
Q ss_pred EEEEecCccccCCCCC---ceecc---------CCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHH
Q 012991 263 FLYCRKSILSSDMHHP---VVSHE---------FGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQ 330 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~ 330 (452)
++++++++++. +... ...+. ++.. ....+..++++...+.++.++++++.+. +++.++++.+++
T Consensus 216 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~ 291 (393)
T 2huf_A 216 PVSFSHRAVER-YKRRNTKVKVYYWDMSLVGDYWGCF-GRPRIYHHTISSTLLYGLREAIAMACEE--GLPALIARHEDC 291 (393)
T ss_dssp EEEECHHHHHH-HHTCSSCCSCGGGCHHHHHHHTTCS-SSCCCCSCCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHH
T ss_pred EEEECHHHHHH-HhhcCCCCceEEEchHHHHhhhccc-cccCCCCCCCCHHHHHHHHHHHHHHHHh--CHHHHHHHHHHH
Confidence 99998877654 1110 00000 1110 0112234677777777777788887654 789999999999
Q ss_pred HHHHHHHHHHHcCCCcCCCccc-ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEI-CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
++++.+.|.++ ++++..++.. .+.++++.++ .+.+..++.+.|.+++||.+..+..+
T Consensus 292 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~~~gi~v~~g~~~--------------- 349 (393)
T 2huf_A 292 AKRLYRGLQDA-GFELYADPKDRLSTVTTIKVP------QGVDWLKAAQYAMKTYLVEISGGLGP--------------- 349 (393)
T ss_dssp HHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECC------TTCCHHHHHHHHHHHHCEECBCCCGG---------------
T ss_pred HHHHHHHHHHc-CCeeccCccccCCcEEEEEcC------CCCCHHHHHHHHHHhCCEEEecCccc---------------
Confidence 99999999987 8887765432 2448888875 24567789998876569999755432
Q ss_pred CCccceEEeccccc-CCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVY-NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++.+ ++++|+++++++|+++++.
T Consensus 350 -~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 350 -TAGQVFRIGLMGQNATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp -GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred -ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence 2357999999554 5789999999999999864
No 11
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=4.9e-36 Score=294.51 Aligned_cols=362 Identities=19% Similarity=0.240 Sum_probs=269.7
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHh
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDD--FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQI 118 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l 118 (452)
+|||.++.++.|+.+.+++.+.+.....+++. .+++...+...++++++++++|++ ++++++|+|||+|+.+++.++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~~ 81 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATESINWILKTV 81 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHHHHHHHhh
Confidence 79999999999999999999987643233432 345666788999999999999986 689999999999999999987
Q ss_pred hcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEe
Q 012991 119 GRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 119 ~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
.+. ..++||+|+++.++|+++...+.. +...|.+++.++. +.++.+ +++|++++ .+++++|+++
T Consensus 82 ~~~----~~~~gd~vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~~~~~~v~~~ 146 (384)
T 1eg5_A 82 AET----FEKRKRTIITTPIEHKAVLETMKY-LSMKGFKVKYVPV----DSRGVVKLEELEKLV------DEDTFLVSIM 146 (384)
T ss_dssp HHH----TTTTCCEEEECTTSCHHHHHHHHH-HHHTTCEEEECCB----CTTSCBCHHHHHHHC------CTTEEEEEEE
T ss_pred hhh----ccCCCCEEEECCCCchHHHHHHHH-HHhcCCEEEEEcc----CCCCccCHHHHHHHh------CCCCeEEEEE
Confidence 311 026899999999999998777754 3567999998854 333434 89999998 5689999999
Q ss_pred ccCCCCcccccHHHHHHHHHHcC--CCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc-cccC
Q 012991 198 HITSMPCVVIPVRKLVKICRDEG--VDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI-LSSD 274 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~~--~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~-~~~~ 274 (452)
+++||||.++|+++|.++|+++| + ++|+|++|+.|..++++..+++|++++|+||+ +|+.|+|++++++++ +..
T Consensus 147 ~~~nptG~~~~~~~i~~l~~~~~~~~-~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~-~g~~G~G~~~~~~~~~~~~- 223 (384)
T 1eg5_A 147 AANNEVGTIQPVEDVTRIVKKKNKET-LVHVDAVQTIGKIPFSLEKLEVDYASFSAHKF-HGPKGVGITYIRKGVPIRP- 223 (384)
T ss_dssp SBCTTTCBBCCHHHHHHHHHHHCTTC-EEEEECTTTTTTSCCCCTTTCCSEEEEEGGGG-TSCTTCEEEEECTTSCCCC-
T ss_pred CCCCCcccccCHHHHHHHHHhcCCce-EEEEEhhhhcCCcccCchhcCCCEEEecHHHh-cCCCceEEEEEcCCCcccc-
Confidence 99999999999999999999999 9 79999999988777777666799999999996 888889999998876 221
Q ss_pred CCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc-cc
Q 012991 275 MHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE-IC 353 (452)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~ 353 (452)
.+.. .+. ......++++...+.++.++++...+ +++.++++.+++++++.+.|.+ +++++..++. ..
T Consensus 224 ---~~~~--~~~---~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~ 291 (384)
T 1eg5_A 224 ---LIHG--GGQ---ERGLRSGTQNVPGIVGAARAMEIAVE---ELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISL 291 (384)
T ss_dssp ---SBCS--SCT---TTTTBCSCCCHHHHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBC
T ss_pred ---cccc--Ccc---cccccCCCCChHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCC
Confidence 1100 000 01122356666666677777776544 6888999999999999999988 5777665532 23
Q ss_pred cceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC----CccceEEecccccCCHHHH
Q 012991 354 AAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG----IITGYARISHQVYNTLEDY 429 (452)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~iRis~~~~~t~~di 429 (452)
..+++|.++ +.+..++.+.|.+ +||.+..+..+...... .....+..+ ...+++|++++.+++++|+
T Consensus 292 ~~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 362 (384)
T 1eg5_A 292 PNTLSVSFP-------NIRGSTLQNLLSG-YGIYVSTSSACTSKDER-LRHVLDAMGVDRRIAQGAIRISLCKYNTEEEV 362 (384)
T ss_dssp TTEEEEECT-------TCCHHHHHHHHHH-TTEECBC-------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHH
T ss_pred CCEEEEEeC-------CCCHHHHHHHHhh-CCeEEeccccccCCCCc-chHHHHHcCCChhhcCCeEEEECCCCCCHHHH
Confidence 567788775 3356789999865 59999765433110000 000000000 1247999999988999999
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
++++++|++++++
T Consensus 363 ~~~~~~l~~~~~~ 375 (384)
T 1eg5_A 363 DYFLKKIEEILSF 375 (384)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 12
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.8e-37 Score=300.97 Aligned_cols=363 Identities=16% Similarity=0.209 Sum_probs=277.9
Q ss_pred HHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecC
Q 012991 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDN 106 (452)
Q Consensus 27 ~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g 106 (452)
..+|++||.... .+||+++++++.|+.+.+++.+.+. ..++....+..+++++.+++++|+++++++++|+|
T Consensus 8 ~~~r~~f~~~~~-~~~l~~~~~~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g 79 (386)
T 2dr1_A 8 EAFKEVYEMVKP-KYKLFTAGPVACFPEVLEIMKVQMF-------SHRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSS 79 (386)
T ss_dssp HHHHHHHHHHSC-CSEECCSSSCCCCHHHHHHTTSCCC-------CTTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSC
T ss_pred HHHHHHHhhcCc-cceeecCCCcCCcHHHHHHHhcccc-------cccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence 668999996544 5799999999999989998876532 12233346788999999999999953467999999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
||+|+.+++.++ +++||+|++++++|++.. +...+...|.+++.++.+ .++.+ +++|++++++
T Consensus 80 ~t~a~~~~~~~l--------~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~-- 143 (386)
T 2dr1_A 80 GTGIMEASIRNG--------VSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVLEYE----PGKAVKPEDLDDALRK-- 143 (386)
T ss_dssp HHHHHHHHHHHH--------SCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECC----TTCCCCHHHHHHHHHH--
T ss_pred hHHHHHHHHHHh--------hcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEEecC----CCCCCCHHHHHHHHhc--
Confidence 999999999987 478999999999998841 333356679999999653 22333 8999999864
Q ss_pred cCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
++++++|++++++||||.+.|+++|.++|++||+ ++|+|++|+.|..++++..+++|++++|+||+++++.|+|+++
T Consensus 144 --~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~ 220 (386)
T 2dr1_A 144 --NPDVEAVTITYNETSTGVLNPLPELAKVAKEHDK-LVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGA 220 (386)
T ss_dssp --CTTCCEEEEESEETTTTEECCHHHHHHHHHHTTC-EEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEE
T ss_pred --CCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCC-eEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEE
Confidence 3678999999999999999999999999999999 7999999999887777777789999999999988787899999
Q ss_pred EecCccccCCCCCc-eeccCCCC---ccc--ccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 266 CRKSILSSDMHHPV-VSHEFGNG---LPI--ESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 266 ~~~~~~~~~l~~~~-~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
+++++++. +.... ..+.+... ... .....++++...+.++.++++.+.+ .+|++.++++.+++++++.+.|.
T Consensus 221 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~g~~~~~~~~~~~~~~~l~~~L~ 298 (386)
T 2dr1_A 221 FSERFLEI-AEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEK-MGGKEKWLEMYEKRAKMVREGVR 298 (386)
T ss_dssp ECHHHHHH-HTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHH-HhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHH
Confidence 99887664 21100 00000000 000 1123456666667777777877664 12688999999999999999999
Q ss_pred HHcCCCcCCCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 340 NAWGTSLGSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 340 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
++ ++++..++. ..+.++++.++ .+.+..++.+.|.++ ||.+..+..+ ..++++|+
T Consensus 299 ~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~~~~~----------------~~~~~iRi 354 (386)
T 2dr1_A 299 EI-GLDILAEPGHESPTITAVLTP------PGIKGDEVYEAMRKR-GFELAKGYGS----------------VKEKTFRI 354 (386)
T ss_dssp HT-TCCBSSCTTCBCSSEEEEECC------TTCCHHHHHHHHHHT-TEECEECCGG----------------GTTTEEEE
T ss_pred Hc-CCeeCcCccccCCceEEEEcC------CCCCHHHHHHHHHHC-CeEEecCccc----------------cCCCEEEE
Confidence 88 887765532 23678888886 245677899999876 9999765532 23469999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhc
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++.+++++|+++++++|++++++
T Consensus 355 ~~~~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 355 GHMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999989999999999999998864
No 13
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=100.00 E-value=2.1e-38 Score=309.30 Aligned_cols=345 Identities=12% Similarity=0.045 Sum_probs=250.5
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-----hhhhhhHHHHHHHHHHHhHhCCCCCCcEEE-ecChhHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-----YFNSLRKGILESRAAVKDLINADDVGEISL-VDNATTAAAI 113 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~i~~-t~g~t~a~~~ 113 (452)
.+||+++++++.|++|++++..++..+.++|++. .+..+.+.++++|+.+++++|++++++|+| |+|+|+++++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 4799999999999999999998887766666542 235567789999999999999974457888 6899999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH-H-HHHHHHHHhccccCCCce
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE-I-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~-~~~l~~~i~~~~~~~~~~ 191 (452)
++.++ +++||+|++...++.+. .|...+++.| ++..++.+. .+.+. + ++++++++ .++|
T Consensus 107 ai~~l--------~~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~--~~~G~~~~~~~~~~~l------~~~t 167 (386)
T 3qm2_A 107 VPLNL--------LGDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKI--TVDGKRAVKPMREWQL------SDNA 167 (386)
T ss_dssp HHHHH--------CTTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEE--EETTEEEECCGGGCCC------CTTC
T ss_pred HHHhc--------cCCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCc--ccCCCCCCchHHHhhc------CCCC
Confidence 99987 47889988776666664 4655578888 899886420 02232 2 56666666 6789
Q ss_pred EEEEEeccCCCCccc-ccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc
Q 012991 192 RLAIIDHITSMPCVV-IPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~-~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~ 270 (452)
++|+++|.+|.+|++ .|+++|. +|+ ++++|++|++|..++|++.++ ++++|+|||+ ||+|+|++++++++
T Consensus 168 ~lV~~~h~et~tG~~i~pi~~i~-----~g~-~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~l-GP~G~g~l~v~~~~ 238 (386)
T 3qm2_A 168 AYLHYCPNETIDGIAIDETPDFG-----PEV-VVTADFSSTILSAPLDVSRYG--VIYAGAQKNI-GPAGLTLVIVREDL 238 (386)
T ss_dssp SCEEECSEETTTTEECCCCCCCC-----TTC-CEEEECTTTTTSSCCCGGGCS--EEEEETTTTT-CCTTEEEEEEEGGG
T ss_pred cEEEEECCcCCcCEecCchhhhc-----CCC-EEEEEcccccCCCCCCccccC--EEEEeccccc-CCCccEEEEECHHH
Confidence 999999999999996 8999985 799 799999999999999999875 6779999986 89999999999998
Q ss_pred cccCCCCCceec--cCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcC
Q 012991 271 LSSDMHHPVVSH--EFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLG 347 (452)
Q Consensus 271 ~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~ 347 (452)
++. ..+.... +++.. .......+|+++..++++.++++++.+. +|++++.++.+++++++++.|.++ ++ ...
T Consensus 239 ~~~--~~~~~p~~~~~~~~-~~~~~~~gTp~v~~i~~l~~Al~~~~~~-gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~ 313 (386)
T 3qm2_A 239 LGK--AHESCPSILDYTVL-NDNDSMFNTPPTFAWYLSGLVFKWLKAQ-GGVAAMHKINQQKAELLYGVIDNS-DFYRND 313 (386)
T ss_dssp CSC--CCTTSCGGGCHHHH-HHC-------CCSHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHTC-SSEECC
T ss_pred Hhh--hcccCCcHHHHHHH-hhcCCCCCCCcHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence 875 2222110 01100 0112335799999999999999999863 479999999999999999999887 54 222
Q ss_pred CCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 348 SPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 348 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
.++. ....++.|.+++ .+.+ ..+...|.+ +||.+..++.+ .+.+|+|+..++|.
T Consensus 314 ~~~~~rs~~iv~f~~~~-----~~~~-~~~~~~L~~-~gI~~~~g~~~------------------~~~iRiS~~~~~t~ 368 (386)
T 3qm2_A 314 VAQANRSRMNVPFQLAD-----NTLD-KVFLEESFA-AGLHALKGHRV------------------VGGMRASIYNAMPI 368 (386)
T ss_dssp BCGGGBCSSEEEEEESS-----GGGH-HHHHHHHHH-TTEECCBCCTT------------------TCSEEEECCTTSCH
T ss_pred CCHHHcCceEEEEECCC-----cccc-HHHHHHHHH-CCCEEeCCCCC------------------cCeEEEEcCCCCCH
Confidence 2232 334688998872 1345 567777865 59998765543 24599999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+||++++++|+++.++
T Consensus 369 edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 369 EGVKALTDFMIDFERR 384 (386)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 14
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=307.22 Aligned_cols=352 Identities=14% Similarity=0.071 Sum_probs=265.4
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-----hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEe-cChhHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-----YFNSLRKGILESRAAVKDLINADDVGEISLV-DNATTAAAI 113 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t-~g~t~a~~~ 113 (452)
+--||.++..+.|++|++++.+.+..+.+++.+. .+..+.+.++++|+.+++++|++++.+|+|+ +|+|+++++
T Consensus 13 ~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 92 (377)
T 3e77_A 13 LGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSA 92 (377)
T ss_dssp --CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHH
Confidence 4568888999999999999999987766665442 3456788999999999999999744679995 799999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++.+ .++||+|++...++.+. .|..++++.|..++.++.++ ..+..++.++..+ ++++++
T Consensus 93 a~~~l~~------~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~---~~~~~~~~~~~~i------~~~t~l 155 (377)
T 3e77_A 93 VPLNLIG------LKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLG---SYTKIPDPSTWNL------NPDASY 155 (377)
T ss_dssp HHHHHGG------GSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCS---SSCSCCCGGGCCC------CTTCSC
T ss_pred HHHhccC------CCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCC---CcCCCCChHHhcc------CCCccE
Confidence 9998842 13489998887777664 45566788898777764321 1111144454445 678999
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCcccc
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSS 273 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~ 273 (452)
|.++|.+|.+|++.|+ +|+++|+ ++++|++|++|..++|++.++ ++++|+|||+ ||+|+|++++++++++.
T Consensus 156 V~~~h~et~tG~~~pi-----i~~~~~~-~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~-gp~G~g~l~~~~~~l~~ 226 (377)
T 3e77_A 156 VYYCANETVHGVEFDF-----IPDVKGA-VLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNV-GSAGVTVVIVRDDLLGF 226 (377)
T ss_dssp EEEESEETTTTEECSS-----CCCCTTC-CEEEECTTTTTSSCCCGGGCS--EEEEEGGGTT-SCTTCEEEEEETTSCSC
T ss_pred EEEeCccCchheEchh-----hhccCCC-EEEEEcccccCCCCCchhhcC--EEEEeccccc-CCCccEEEEEcHHHHhh
Confidence 9999999999999998 4788999 799999999999999999876 6889999986 89999999999999876
Q ss_pred CCCCCceeccCCCC-cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCC-Ccc
Q 012991 274 DMHHPVVSHEFGNG-LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGS-PPE 351 (452)
Q Consensus 274 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~ 351 (452)
..+......... ........+||++..++++.++++++.+. +|++++.++.+++++++++.|.+++|+.+.. ++.
T Consensus 227 --~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~-GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~ 303 (377)
T 3e77_A 227 --ALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNN-GGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQ 303 (377)
T ss_dssp --CCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGG
T ss_pred --ccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHH
Confidence 232211111000 00112345899999999999999999863 4799999999999999999999988876432 233
Q ss_pred ccc-ceEEEEcCCccccCChhhH-HHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 352 ICA-AMVMVGLPSRLRVMGEDDA-LRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 352 ~~~-~~~~~~~~~~~~~~~~~~~-~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
.++ .++.|.++.. ..+.+. ..+.+.|.+ +||.+..++.. .+.+|+|+..++|.+||
T Consensus 304 ~rs~~ivsf~~~~~---~~~~~~~~~~l~~l~~-~Gi~~~~g~~~------------------~g~iRiS~~~~~t~edI 361 (377)
T 3e77_A 304 NRSKMNIPFRIGNA---KGDDALEKRFLDKALE-LNMLSLKGHRS------------------VGGIRASLYNAVTIEDV 361 (377)
T ss_dssp GBCSSEEEEEESST---TCCHHHHHHHHHHHHH-TTEESCBCCTT------------------TCSEEEECCTTSCHHHH
T ss_pred HcCCcEEEEEcCCC---CCchhHHHHHHHHHHH-CCcEEeCCCCc------------------CCEEEEECCCCCCHHHH
Confidence 334 4688998721 101111 356677755 59998655432 34699999999999999
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
++++++|+++.++
T Consensus 362 d~l~~al~~~~~~ 374 (377)
T 3e77_A 362 QKLAAFMKKFLEM 374 (377)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999865
No 15
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=100.00 E-value=6.5e-37 Score=302.73 Aligned_cols=372 Identities=16% Similarity=0.146 Sum_probs=259.2
Q ss_pred hccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHH
Q 012991 33 FSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTA 110 (452)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a 110 (452)
|+....+.+|||.++.++.|+.+.+++.+.+.....++... +.+...+..++++++++++++++ ++++++|+|+|+|
T Consensus 14 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~g~t~a 92 (400)
T 3vax_A 14 LVPRGSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE-PDELIFTSGATES 92 (400)
T ss_dssp --------CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC-GGGEEEESCHHHH
T ss_pred CCcccCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC-CCcEEEeCCHHHH
Confidence 45556789999999999999999999999987766666543 33455778899999999999996 7899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCC-EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRND-TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~-~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
+.+++.++.+. ..++|| +|+++.++|+++...+..+ ...|.+++.+++ +.++.+ +++|++++ .
T Consensus 93 l~~~~~~l~~~----~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~ 157 (400)
T 3vax_A 93 NNIALLGLAPY----GERTGRRHIITSAIEHKAVLEPLEHL-AGRGFEVDFLTP----GPSGRISVEGVMERL------R 157 (400)
T ss_dssp HHHHHHTTHHH----HHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCEEEEECC----CTTCCCCHHHHHTTC------C
T ss_pred HHHHHHHHHHh----hccCCCCEEEECccccHhHHHHHHHH-HhcCCeEEEEcc----CCCCCcCHHHHHHhc------C
Confidence 99999976210 016799 9999999999998888774 567999999954 434444 89999988 5
Q ss_pred CceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEE-Ee
Q 012991 189 KMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLY-CR 267 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~-~~ 267 (452)
+++++|++++++||||.+.|+++|.++|+++|+ ++|+|++|+.+..+.++... +|++++|+|| ++|+.|+|+++ ++
T Consensus 158 ~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~-~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K-~~g~~g~g~~~~~~ 234 (400)
T 3vax_A 158 PDTLLVSLMHVNNETGVIQPVAELAQQLRATPT-YLHVDAAQGYGKVPGDLTTP-IDMISISGHK-IGAPKGVGALVTRR 234 (400)
T ss_dssp TTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSC-EEEEECTTTTTTSGGGGGSC-CSEEEEETGG-GTSCSSCEEEEECB
T ss_pred CCceEEEEECCCCCceeeCcHHHHHHHHHhcCC-EEEEEhhhhcCCCCcChhhc-CcEEEEeHHH-hCCCCceEEEEEec
Confidence 789999999999999999999999999999999 79999999999888887777 9999999999 68898999999 88
Q ss_pred cCcccc--CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 268 KSILSS--DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 268 ~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
++.+.. ....+.. .+... ......++++...+.++.++++.+.+ ++++++++.+++++++.+.|. .++++
T Consensus 235 ~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~-~~~~~ 306 (400)
T 3vax_A 235 REEMDDERVPLEPIM---FGGGQ-ERKLRPGTLPVPLIMGLAEAAKIFEA---EHAQWQVAAQDLRSRLLAGLA-STSFQ 306 (400)
T ss_dssp CSSSTTCBCCCCCSS---CSSCT-GGGTSCSCCCHHHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHHHHT-TTTCE
T ss_pred chhccccccccCcee---cCCCc-eeeeecCCCCHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHhhC-CCCEE
Confidence 733220 0011111 11111 12233466777777777778887665 789999999999999999998 77888
Q ss_pred cCCCccc-ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC----ccceEEecc
Q 012991 346 LGSPPEI-CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI----ITGYARISH 420 (452)
Q Consensus 346 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~iRis~ 420 (452)
+..++.. .++++++.++ +.+..++.+.|. + ||.++.+..+...+.. ........+. .++++|+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~L~-~-gi~v~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~iRls~ 376 (400)
T 3vax_A 307 VNGDQDHVVPHILNLSFE-------DVDAEAFLVTLK-D-LVAVATGSASTSASFT-PSHVLRAMGLPEEAASKSLRFSW 376 (400)
T ss_dssp ECSCTTSBCTTEEEEECT-------TCCHHHHHHHHH-H-HHHHTTTTEEEEEEEC-CHHHHHTTTCCHHHHTSEEEEEE
T ss_pred EeCCcccCCCCEEEEEeC-------CCCHHHHHHHHh-c-CcEEEecccccCCCCC-ccHHHHHcCCCccccCceEEEEc
Confidence 7666532 3468888875 456778999997 4 9988654322110000 0000000011 148999999
Q ss_pred -cccCCHHHHHHHHHHHHHHHh
Q 012991 421 -QVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 421 -~~~~t~~di~~l~~~l~~~~~ 441 (452)
+..++++|+++++++|+++++
T Consensus 377 ~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 377 TPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp EEC-------------------
T ss_pred cCCCCCHHHHHHHHHHHHHHhc
Confidence 988999999999999998875
No 16
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=1.1e-36 Score=300.58 Aligned_cols=364 Identities=15% Similarity=0.174 Sum_probs=277.3
Q ss_pred CCCHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCC-cE
Q 012991 23 CISEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG-EI 101 (452)
Q Consensus 23 ~~~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~i 101 (452)
..+.+++|+.||....+.+|++++++.+.|+.+.+++.+.+.. .++....+..+++++.+++++|++ ++ ++
T Consensus 17 ~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~~~~~la~~~g~~-~~~~v 88 (393)
T 1vjo_A 17 ISINDNQRLQLEPLEVPSRLLLGPGPSNAHPSVLQAMNVSPVG-------HLDPAFLALMDEIQSLLRYVWQTE-NPLTI 88 (393)
T ss_dssp CCCCCTTCCCCCSCCCCCCEECSSSCCCCCHHHHHHHSSCCCC-------TTSHHHHHHHHHHHHHHHHHHTCC-CSCEE
T ss_pred eeecchhhhcCCccCCccceeccCCCCCCCHHHHHHHhccccc-------ccCHHHHHHHHHHHHHHHHHhCCC-CCcEE
Confidence 3456778889987666678999999999999899998775421 233335677899999999999995 67 89
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
++|+|||+|+..++.++ +++||+|++++++|++. .+...++..|.+++.++++ .++.+ +++|++.
T Consensus 89 ~~t~g~t~al~~~~~~~--------~~~gd~Vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~ 154 (393)
T 1vjo_A 89 AVSGTGTAAMEATIANA--------VEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTISKP----WGEVFSLEELRTA 154 (393)
T ss_dssp EESSCHHHHHHHHHHHH--------CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECC----TTCCCCHHHHHHH
T ss_pred EEeCchHHHHHHHHHhc--------cCCCCEEEEEcCChhHH--HHHHHHHHcCCceEEEecC----CCCCCCHHHHHHH
Confidence 99999999999999987 47899999999999882 2333356679999999653 23334 8999999
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+++ .++++|++++++||||.+.|+++|.++|+++|+ ++|+|++++.|..++++...++|++++|+||+++++.|
T Consensus 155 l~~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~ 228 (393)
T 1vjo_A 155 LET-----HRPAILALVHAETSTGARQPLEGVGELCREFGT-LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPG 228 (393)
T ss_dssp HHH-----HCCSEEEEESEETTTTEECCCTTHHHHHHHHTC-EEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSS
T ss_pred Hhh-----CCceEEEEeccCCCcceeccHHHHHHHHHHcCC-EEEEECCccccCcCCcccccCccEEEEcCcccccCCCc
Confidence 952 178899999999999999999999999999999 79999999988887787777899999999999888888
Q ss_pred cEEEEEecCccccCCCC---CceeccCCCC----c-ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHH---PVVSHEFGNG----L-PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~---~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
+|++++++++++. +.. ......++.. . .......++++...+.++.++++.+.+. +++.++++++++++
T Consensus 229 ~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~ 305 (393)
T 1vjo_A 229 ASPFTMSSRAIEK-LQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE--GLANCWQRHQKNVE 305 (393)
T ss_dssp CEEEEECHHHHHH-HHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHH-HhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHH
Confidence 9999999887654 100 0000001100 0 0001112366777777778888876543 78999999999999
Q ss_pred HHHHHHHHHcCCCcCCCccc-ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 333 KMARMLANAWGTSLGSPPEI-CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
++.+.|.++ ++++..+... ...++++.++ .+.+..++.+.|.+++||.+..+..+ .
T Consensus 306 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~gi~v~~g~~~----------------~ 362 (393)
T 1vjo_A 306 YLWERLEDI-GLSLHVEKEYRLPTLTTVCIP------DGVDGKAVARRLLNEHNIEVGGGLGE----------------L 362 (393)
T ss_dssp HHHHHHHHT-TCCBSSCGGGBCSSEEEEECC------TTCCHHHHHHHHHHHHCEECEECCGG----------------G
T ss_pred HHHHHHHHc-CCcccCCccccCCcEEEEEcC------CCCCHHHHHHHHHhhCCEEEecCccc----------------c
Confidence 999999987 8887665431 2467888876 24567789999976569999766543 2
Q ss_pred ccceEEeccc-ccCCHHHHHHHHHHHHHHH
Q 012991 412 ITGYARISHQ-VYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 412 ~~~~iRis~~-~~~t~~di~~l~~~l~~~~ 440 (452)
.++++|+++. ..++++++++++++|++++
T Consensus 363 ~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 363 AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 3579999964 4456778999999999876
No 17
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=6.8e-36 Score=297.71 Aligned_cols=369 Identities=16% Similarity=0.173 Sum_probs=279.6
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHH--HHhcCCch---hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQL--KFLQQPDD---FYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
+..++|||.++.++.|+.+.+++.+.+. ....++.. .+.+...+..++++++++++++++ ++++++|+|||+|+
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggt~a~ 98 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGATESD 98 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHHHHH
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCChHHHH
Confidence 5789999999999999999999988765 33333432 244566778899999999999996 78999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++.+.+ .++||+|+++.++|+++...+..+ ...|.+++.++. +.++.+ +++|++++ .++
T Consensus 99 ~~a~~~l~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~----~~~~~~d~~~l~~~i------~~~ 163 (423)
T 3lvm_A 99 NLAIKGAANFY----QKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAP----QRNGIIDLKELEAAM------RDD 163 (423)
T ss_dssp HHHHHHHHHHH----TTTCCEEEEETTSCHHHHHHHHHH-HHTTCEEEEECC----CTTSCCCHHHHHHHC------CTT
T ss_pred HHHHHHHHHhh----ccCCCEEEECCccchHHHHHHHHH-HHcCCEEEEecc----CCCCccCHHHHHHhc------CCC
Confidence 99999875321 247999999999999988888764 667999999954 434444 89999999 578
Q ss_pred eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc
Q 012991 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~ 270 (452)
+++|++++++||||.+.|+++|.++|++||+ ++|+|++++.+..+.+....++|++++|+|| ++|+.|+|+++++++.
T Consensus 164 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~~~~~~~~~~~~~di~~~s~sK-~~g~~g~G~~~~~~~~ 241 (423)
T 3lvm_A 164 TILVSIMHVNNEIGVVQDIAAIGEMCRARGI-IYHVDATQSVGKLPIDLSQLKVDLMSFSGHK-IYGPKGIGALYVRRKP 241 (423)
T ss_dssp EEEEECCSBCTTTCBBCCHHHHHHHHHHHTC-EEEEECTTTTTTSCCCTTTSCCSEEEEESTT-TTSCSSCEEEEECBTT
T ss_pred cEEEEEeCCCCCCccccCHHHHHHHHHHcCC-EEEEEhhhhcCCCCcChhhcCCCEEEechHH-hcCCCCeEEEEEeccc
Confidence 9999999999999999999999999999999 7999999999988888888889999999999 5888889999999887
Q ss_pred cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Q 012991 271 LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP 350 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 350 (452)
... + .+.. .+.+. ......++++...+.++.++++.+.. .++.++++.+++++++.+.|.+++++++..++
T Consensus 242 ~~~-~-~~~~---~~~~~-~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 312 (423)
T 3lvm_A 242 RVR-I-EAQM---HGGGH-ERGMRSGTLPVHQIVGMGEAYRIAKE---EMATEMERLRGLRNRLWNGIKDIEEVYLNGDL 312 (423)
T ss_dssp BCC-C-CCSS---CSSCT-TTTTCCSCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTSTTEEEESCS
T ss_pred cCC-C-Cccc---cCCcc-cccccCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCc
Confidence 765 2 2221 11111 11223466777777777777877765 37888999999999999999888787766554
Q ss_pred c-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC----CccceEEecccccCC
Q 012991 351 E-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG----IITGYARISHQVYNT 425 (452)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~iRis~~~~~t 425 (452)
. ...+++.|.++ +.+..++.+.|.+ |.+..+..+...+.. ........+ ..++++|++++..++
T Consensus 313 ~~~~~~~~~~~~~-------~~~~~~l~~~l~~---i~v~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~iRi~~~~~~t 381 (423)
T 3lvm_A 313 EHGAPNILNVSFN-------YVEGESLIMALKD---LAVSSGSACTSASLE-PSYVLRALGLNDELAHSSIRFSLGRFTT 381 (423)
T ss_dssp TTBCTTEEEEEET-------TSCHHHHHHHTTT---EECBCCCC-----CC-CCHHHHHHTCCHHHHHTEEEEECCTTCC
T ss_pred cccCCCeEEEEeC-------CCCHHHHHHHHhh---heeccCccccCCCcc-ccHHHHHhCCCccccCceEEEECCCCCC
Confidence 3 22457777774 4567788888853 777655433211000 000000000 115799999999899
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 012991 426 LEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~~ 443 (452)
++||++++++|++++++-
T Consensus 382 ~e~i~~~~~~l~~~~~~~ 399 (423)
T 3lvm_A 382 EEEIDYTIELVRKSIGRL 399 (423)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998653
No 18
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=100.00 E-value=1.3e-35 Score=294.38 Aligned_cols=353 Identities=12% Similarity=0.085 Sum_probs=270.2
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
++..++.++++...++.+.+++.+.. ..++.....+..++++++++++++.+..+.+++++|||+|+.+++.+
T Consensus 11 ~~~~~~~~pgp~~~~~~v~~a~~~~~-------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~ 83 (411)
T 3nnk_A 11 PPSRLLMGPGPINADPRVLRAMSSQL-------IGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVS 83 (411)
T ss_dssp CCCCEEESSSCCCCCHHHHHHHTSCC-------CCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHH
T ss_pred CccceeecCCCCCCCHHHHHHhhccc-------cccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHH
Confidence 44446666667777777888887532 11122334577899999999999997333478899999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ +++||+|++++++|++.. +...+...|.+++.++. +.++.+ +++|++++++ .++++|++
T Consensus 84 ~--------~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~----~~~~~~d~~~l~~~i~~-----~~~~~v~~ 144 (411)
T 3nnk_A 84 A--------IRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEV----PWGEVFTPDQVEDAVKR-----IRPRLLLT 144 (411)
T ss_dssp H--------CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEEC----CTTCCCCHHHHHHHHHH-----HCCSEEEE
T ss_pred h--------cCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEec----CCCCCCCHHHHHHHHhh-----CCCeEEEE
Confidence 7 589999999999998742 23335677999999965 333344 8999999952 37899999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++|+||.+.|+++|.++|++||+ ++|+|++++.+..+++....++|++++|+|||++|+.|+|++++++++++. +.
T Consensus 145 ~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~-~~ 222 (411)
T 3nnk_A 145 VQGDTSTTMLQPLAELGEICRRYDA-LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEA-IR 222 (411)
T ss_dssp ESEETTTTEECCCTTHHHHHHHHTC-EEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHH-HH
T ss_pred eCCCCCcceeccHHHHHHHHHHcCC-EEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHH-Hh
Confidence 9999999999999999999999999 799999999999888888888999999999998999999999999887654 11
Q ss_pred CC--ceeccCCCC------cc----------------cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 277 HP--VVSHEFGNG------LP----------------IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 277 ~~--~~~~~~~~~------~~----------------~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
.. ....+.|.. .. ......++++...+.++.++++.+.+. |++.++++.+++++
T Consensus 223 ~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~ 300 (411)
T 3nnk_A 223 RRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQE--GLDYGIARHKLHGD 300 (411)
T ss_dssp TTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHH
Confidence 10 000011110 00 112344677777778888888887765 89999999999999
Q ss_pred HHHHHHHHHcCCCcCCCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 333 KMARMLANAWGTSLGSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
++.+.|.++ ++++..++. ..+.++++.+| .+.+..++.+.|.+++||.++.+... .
T Consensus 301 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~gi~v~~g~~~----------------~ 357 (411)
T 3nnk_A 301 ALVKGIQAM-GLETFGDLKHKMNNVLGVVIP------QGINGDQARKLMLEDFGIEIGTSFGP----------------L 357 (411)
T ss_dssp HHHHHHHHT-TCCBCSCGGGBCSSEEEEECC------TTCCHHHHHHHHHHHHSEEEEECCGG----------------G
T ss_pred HHHHHHHHc-CCEeCCCcccccccEEEEECC------CCCCHHHHHHHHHHhcCeEEeCccCC----------------C
Confidence 999999987 887766543 34678888886 35577889999877679999765432 3
Q ss_pred ccceEEecc-cccCCHHHHHHHHHHHHHHHhcc
Q 012991 412 ITGYARISH-QVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 412 ~~~~iRis~-~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.++++|+++ +..++++|+++++++|++++++.
T Consensus 358 ~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 358 HGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 357999998 65668999999999999998753
No 19
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=9.8e-36 Score=288.96 Aligned_cols=338 Identities=14% Similarity=0.117 Sum_probs=258.2
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~ 121 (452)
|+.++++.+.|+.+.+++.+.+.. .+.+...+...++++++++++|++ ++++++|+|||+|+.+++.++
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~~--- 71 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH-------HRTEAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNL--- 71 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC-------TTSHHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHH---
T ss_pred ccccCCCCCCCHHHHHHhccCCCC-------ccCHHHHHHHHHHHHHHHHHhCCC-CceEEEcCchHHHHHHHHHhc---
Confidence 566677777788899998875421 122345667899999999999996 689999999999999999987
Q ss_pred cccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC
Q 012991 122 FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 122 ~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
+++||+|++++++|++.. +..+++..|.+++.++++. ++.+ ++++++ +++++|++++++
T Consensus 72 -----~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~----~~~~d~~~l~~---------~~~~~v~~~~~~ 131 (352)
T 1iug_A 72 -----FAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPY----GDTPRPEDVAK---------EGYAGLLLVHSE 131 (352)
T ss_dssp -----CCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCT----TCCCCTTTSCC---------SSCSEEEEESEE
T ss_pred -----cCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCC----CCCCCHHHHhc---------cCCcEEEEEEec
Confidence 478999999999999975 4333567899999997532 2222 343332 467899999999
Q ss_pred CCCcccccHHHHHHHHHHc--CCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCC
Q 012991 201 SMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHP 278 (452)
Q Consensus 201 n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~ 278 (452)
||||.+.|+++|.++|++| |+ ++|+|++|+.|..++++...++|++++|+|||++|+.|+|+++++++.++. + .+
T Consensus 132 nptG~~~~l~~i~~l~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~-~-~~ 208 (352)
T 1iug_A 132 TSTGALADLPALARAFKEKNPEG-LVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALER-L-KP 208 (352)
T ss_dssp TTTTEECCHHHHHHHHHHHCTTC-EEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHT-C-CC
T ss_pred CCcceecCHHHHHHHHHhhCCCC-EEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHH-h-hC
Confidence 9999999999999999999 99 799999999888877776678999999999998999999999998887654 2 11
Q ss_pred ceeccCCCC----cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccccc
Q 012991 279 VVSHEFGNG----LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA 354 (452)
Q Consensus 279 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 354 (452)
..+..+.. ........++++...+.++.++++.+.+ .++.++++++++++++.+.|.++ ++++..++ ..+
T Consensus 209 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~ 282 (352)
T 1iug_A 209 -RGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLP---RLEEHLALKAWQNALLYGVGEEG-GLRPVPKR-FSP 282 (352)
T ss_dssp -CSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG---GHHHHHHHHHHHHHHHHHHHHHT-TCEESCSS-BCT
T ss_pred -CCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC-CCcccccc-cCC
Confidence 00000000 0001123456666666667777777654 37888999999999999999987 88776554 236
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRD 434 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~ 434 (452)
+++++.++ ++.+..++.+.|.++ ||.+..+..+ ..++++|++++.+++.+|++++++
T Consensus 283 ~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~~~~~----------------~~~~~iRi~~~~~~~~~~i~~~~~ 339 (352)
T 1iug_A 283 AVAAFYLP------EGVPYARVKEAFAQR-GAVIAGGQGP----------------LKGKVFRLSLMGAYDRYEALGVAG 339 (352)
T ss_dssp TCEEEECC------TTCCHHHHHHHHHTT-TEECEECCGG----------------GTTTEEEECCCSSCCHHHHHHHHH
T ss_pred eEEEEEcC------CCCCHHHHHHHHHHC-CEEEEeCCCc----------------cCCCEEEEEccccCCHHHHHHHHH
Confidence 78888886 245677899999775 9999765532 235799999999889999999999
Q ss_pred HHHHHHhc
Q 012991 435 AVILLVEE 442 (452)
Q Consensus 435 ~l~~~~~~ 442 (452)
+|++++++
T Consensus 340 ~l~~~~~~ 347 (352)
T 1iug_A 340 MFREVLEE 347 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 20
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=100.00 E-value=3.4e-36 Score=292.09 Aligned_cols=342 Identities=14% Similarity=0.116 Sum_probs=260.4
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHHHHHHHHHhhc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-DVGEISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a~~~~~~~l~~ 120 (452)
+|+ +++.+.|+.+.+++.+.+.. ++.+...+...++++++++++|.+ +++++++|+|||+|+.+++.++
T Consensus 3 ~~~-~gp~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~-- 72 (353)
T 2yrr_A 3 LLT-PGPTPIPERVQKALLRPMRG-------HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANL-- 72 (353)
T ss_dssp ECS-SSSCCCCHHHHGGGGSCCCC-------TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTC--
T ss_pred cCC-CCCCCCCHHHHHHHhccccc-------ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHh--
Confidence 444 44556677799988765421 122344577899999999999985 3578999999999999999865
Q ss_pred ccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEecc
Q 012991 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHI 199 (452)
Q Consensus 121 ~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~ 199 (452)
.+ |+|++++++|++. .+...++..|.+++.++.+ .++.+ ++++++.+++ .++++|+++++
T Consensus 73 ------~~--d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~-----~~~~~v~~~~~ 133 (353)
T 2yrr_A 73 ------DR--GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFP----PGEPVDPEAVARALKR-----RRYRMVALVHG 133 (353)
T ss_dssp ------SC--CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECC----TTSCCCHHHHHHHHHH-----SCCSEEEEESE
T ss_pred ------cC--CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCC----CCCCCCHHHHHHHHHh-----CCCCEEEEEcc
Confidence 23 8899999999986 3444467789999999653 23334 8999999953 17889999999
Q ss_pred CCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC-C
Q 012991 200 TSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH-P 278 (452)
Q Consensus 200 ~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~-~ 278 (452)
+||||.+.|+++|.++|++||+ ++|+|++|+.|..+.++..+++|++++|+|||++|+.|+|++++++++++. +.. +
T Consensus 134 ~nptG~~~~~~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~-l~~~~ 211 (353)
T 2yrr_A 134 ETSTGVLNPAEAIGALAKEAGA-LFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKA-FTGKR 211 (353)
T ss_dssp ETTTTEECCHHHHHHHHHHHTC-EEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHH-CCCCS
T ss_pred CCCcceecCHHHHHHHHHHcCC-eEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHH-hccCC
Confidence 9999999999999999999999 799999999887777766667899999999998999999999999887764 211 1
Q ss_pred ceeccCCC----CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccccc
Q 012991 279 VVSHEFGN----GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA 354 (452)
Q Consensus 279 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 354 (452)
. ..+.. +........++++...+.++.++++++.+. |++.++++.+++++++.+.|.++ ++++..++...+
T Consensus 212 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 286 (353)
T 2yrr_A 212 G--WYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEE--GVAARERRAREVYAWVLEELKAR-GFRPYPKASPLP 286 (353)
T ss_dssp C--STTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCT
T ss_pred C--ccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCC
Confidence 0 00000 000012234566766777777788887654 78999999999999999999987 887765542236
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHH-HHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYE-KFR 433 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~-~l~ 433 (452)
++++|.++ .+.+..++.+.|.++ ||.+..+..+ ..++++|++++.+++.+|++ +++
T Consensus 287 ~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~g~~~----------------~~~~~iRi~~~~~~~~~~~~~~~~ 343 (353)
T 2yrr_A 287 TVLVVRPP------EGVDADRLVRALYAE-GVAVAGGIGP----------------TRGQVLRLGLMGEGARREAYQAFL 343 (353)
T ss_dssp TEEEEECC------TTCCHHHHHHHHHHT-TEECEECCGG----------------GTTTCEEEECSGGGSCHHHHHHHH
T ss_pred eEEEEECC------CCCCHHHHHHHHHHC-CEEEeCCccc----------------cCCCeEEEecCccCCHHHHHHHHH
Confidence 67788886 245678899999775 9999766543 23468999998888999999 999
Q ss_pred HHHHHHHhc
Q 012991 434 DAVILLVEE 442 (452)
Q Consensus 434 ~~l~~~~~~ 442 (452)
++|++++++
T Consensus 344 ~~l~~~l~~ 352 (353)
T 2yrr_A 344 KALDRALAL 352 (353)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998764
No 21
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=1.4e-35 Score=292.72 Aligned_cols=356 Identities=13% Similarity=0.155 Sum_probs=267.9
Q ss_pred hhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCC-cEEEecChhHH
Q 012991 32 EFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG-EISLVDNATTA 110 (452)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~i~~t~g~t~a 110 (452)
.||.+..+.+++.+.++...++.+.+++.+.+. ..+...+.....++++.++++++.+ ++ ++++|+|||+|
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~a 81 (396)
T 2ch1_A 10 LRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTVL-------SNFHAELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAG 81 (396)
T ss_dssp GSSCCCCCCCBCCSSSSCCCCHHHHHHTTSCCC-------CTTCHHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHH
T ss_pred cCCCCCCCcceeecCCCCCCCHHHHHHhccccc-------cCCChhHHHHHHHHHHHHHHHhCCC-CCcEEEECCcHHHH
Confidence 477666666666666677777878888876431 1122233456899999999999996 56 79999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +++||+|++++++|++.. +...++..|.+++.++++ .++.+ ++++++++++ .
T Consensus 82 l~~~~~~~--------~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~-----~ 142 (396)
T 2ch1_A 82 MEAMLSNL--------LEEGDRVLIAVNGIWAER--AVEMSERYGADVRTIEGP----PDRPFSLETLARAIEL-----H 142 (396)
T ss_dssp HHHHHHHH--------CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECC----TTSCCCHHHHHHHHHH-----H
T ss_pred HHHHHHHh--------cCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEecCC----CCCCCCHHHHHHHHHh-----C
Confidence 99999987 478999999999999853 322357789999999653 23334 8999999852 1
Q ss_pred ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
++++|++++++||||.++|+++|.++|+++|+ ++|+|++++.|..++++..+++|+++.|+||+++++.|+|+++++++
T Consensus 143 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~ 221 (396)
T 2ch1_A 143 QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDC-LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPK 221 (396)
T ss_dssp CCSEEEEESEETTTTEECCCTTHHHHHHHTTC-EEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHH
T ss_pred CCCEEEEECCCCCCceecCHHHHHHHHHHcCC-EEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHH
Confidence 68999999999999999999999999999999 79999999998888887777889999999999999999999999887
Q ss_pred ccccCCCC------Cce-ec-----cCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 270 ILSSDMHH------PVV-SH-----EFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 270 ~~~~~l~~------~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
+++. +.. +.. .. .++.. .......++++...+.++.++++.+.+. +++.++++++++++++.+.
T Consensus 222 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~ 297 (396)
T 2ch1_A 222 ALDV-IRNRRTKSKVFYWDLLLLGNYWGCY-DEPKRYHHTVASNLIFALREALAQIAEE--GLENQIKRRIECAQILYEG 297 (396)
T ss_dssp HHHH-HHTCSSCCSCGGGCHHHHHHHTTCS-SSCCCCCCCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-hhhccCcccceEechHHHHHhhhhh-cccCCCCCCCcHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH
Confidence 6654 111 000 00 01100 0012234566666777777788876543 7899999999999999999
Q ss_pred HHHHcCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 338 LANAWGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 338 L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
|.++ ++++..+.. ..+.++++.++ .+.+..++.+.|.+++||.+..+..+ ..+++
T Consensus 298 L~~~-g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~~~gi~v~~g~~~----------------~~~~~ 354 (396)
T 2ch1_A 298 LGKM-GLDIFVKDPRHRLPTVTGIMIP------KGVDWWKVSQYAMNNFSLEVQGGLGP----------------TFGKA 354 (396)
T ss_dssp HHHH-TCCBSSCSGGGBCTTEEEEECC------TTCCHHHHHHHHHHHHCBCCBCCCGG----------------GTTTE
T ss_pred HHHC-CCeeccCCccccCCceEEEEcC------CCCCHHHHHHHHHHhCCEEEecCccc----------------cCCCE
Confidence 9998 888766543 22457888886 34567889999876569998754432 23579
Q ss_pred EEeccc-ccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQ-VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~-~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|++++ ..++++|+++++++|+++++.
T Consensus 355 iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 355 WRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 999994 456899999999999999864
No 22
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=100.00 E-value=3.2e-35 Score=289.57 Aligned_cols=349 Identities=14% Similarity=0.184 Sum_probs=264.9
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG 121 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~ 121 (452)
++.++++...|+.+.+++.+... ..+.....+...+++++++++++.++.+++++|+|||+|+..++.++
T Consensus 25 ~~~~p~p~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--- 94 (393)
T 3kgw_A 25 LLLGPGPSNLAPRVLAAGSLRMI-------GHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--- 94 (393)
T ss_dssp EECSSSCCCCCHHHHHHTTCCCC-------CTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH---
T ss_pred eeccCCCCCCCHHHHHHhccccc-------CcccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc---
Confidence 55555666777778888865321 11223345678899999999999974446999999999999999987
Q ss_pred cccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC
Q 012991 122 FTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 122 ~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
+++||+|+++.+.|++. .+...+...|.+++.++++ .++.+ +++|++++++ .++++|++++++
T Consensus 95 -----~~~gd~vl~~~~~~~~~--~~~~~~~~~g~~~~~~~~~----~~~~~d~~~l~~~i~~-----~~~~~v~~~~~~ 158 (393)
T 3kgw_A 95 -----LEPGDSFLTGTNGIWGM--RAAEIADRIGARVHQMIKK----PGEHYTLQEVEEGLAQ-----HKPVLLFLVHGE 158 (393)
T ss_dssp -----CCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECC----TTCCCCHHHHHHHHHH-----HCCSEEEEESEE
T ss_pred -----CCCCCEEEEEeCCchhH--HHHHHHHHcCCceEEEeCC----CCCCCCHHHHHHHHhh-----CCCcEEEEeccC
Confidence 58999999998888643 2333367789999999653 22334 8999999952 278999999999
Q ss_pred CCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC---
Q 012991 201 SMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH--- 277 (452)
Q Consensus 201 n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~--- 277 (452)
||||.+.|+++|.++|++||+ ++|+|++++.|..+++....++|++++|+||+++|+.|+|++++++++++. +..
T Consensus 159 nptG~~~~l~~i~~l~~~~~~-~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~-~~~~~~ 236 (393)
T 3kgw_A 159 SSTGVVQPLDGFGELCHRYQC-LLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYK-VYSRKT 236 (393)
T ss_dssp TTTTEECCCTTHHHHHHHTTC-EEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHH-HHTCSS
T ss_pred CcchhhccHHHHHHHHHHcCC-EEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHH-HhccCC
Confidence 999999999999999999999 799999999888888887788999999999998899999999999887654 211
Q ss_pred Cceec---------cCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q 012991 278 PVVSH---------EFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGS 348 (452)
Q Consensus 278 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 348 (452)
+.... .++.. .....+.++++...+.++.++++...+. +++.+.++++++++++.+.|.++ ++++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 312 (393)
T 3kgw_A 237 KPVSFYTDITYLAKLWGCE-GETRVIHHTTPVTSLYCLRESLALIAEQ--GLENCWRRHREATAHLHKHLQEM-GLKFFV 312 (393)
T ss_dssp CCSCSTTCHHHHHHHTTCS-SSCCCCCCCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-TCCBSS
T ss_pred CCCceeecHHHHHHhhhhc-cccCCCCCCCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHc-CCeecc
Confidence 00000 01100 1122345677777777787888877764 89999999999999999999988 877654
Q ss_pred Cc-c-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc-cccCC
Q 012991 349 PP-E-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH-QVYNT 425 (452)
Q Consensus 349 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t 425 (452)
+. . ..+.++++.++ .+.+..++.+.|.+++||.+..+..+ ..++++|+++ +..+|
T Consensus 313 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~gi~v~~g~~~----------------~~~~~iRi~~~~~~~~ 370 (393)
T 3kgw_A 313 KDPEIRLPTITTVTVP------AGYNWRDIVSYVLDHFSIEISGGLGP----------------TEERVLRIGLLGYNAT 370 (393)
T ss_dssp SSGGGBCSSEEEEECC------TTBCHHHHHHHHHHHHCEECBCCCGG----------------GTTTEEEEECCGGGCC
T ss_pred CChhhcCCeEEEEeCC------CCCCHHHHHHHHHHhCCEEEeCCccc----------------CCCCEEEEEecccCCC
Confidence 32 2 22456678876 35577889999977569999765432 3357999998 54459
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 012991 426 LEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~~~ 444 (452)
++|+++++++|++++++-.
T Consensus 371 ~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 371 TENVDRVAEALREALQHCP 389 (393)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999997643
No 23
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=100.00 E-value=1.5e-35 Score=291.03 Aligned_cols=340 Identities=16% Similarity=0.174 Sum_probs=262.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCC--CcEEEecChhHHHHHHHHHhhcccc
Q 012991 46 GSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDV--GEISLVDNATTAAAIVLQQIGRGFT 123 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~i~~t~g~t~a~~~~~~~l~~~~~ 123 (452)
+++.+.|+.+.+++.+.+. ..+.....+..++++++++++++++ . +++++|+|||+|+. ++.++
T Consensus 8 ~gp~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~v~~~~g~t~al~-~~~~~----- 73 (384)
T 3zrp_A 8 VGPTTIKEDVLVAGLENNV-------GFTSKEFVEALAYSLKGLRYVMGAS-KNYQPLIIPGGGTSAME-SVTSL----- 73 (384)
T ss_dssp SSCSCCCHHHHHHTTCCSC-------CTTSHHHHHHHHHHHHHHHHHHTCC-TTSEEEEEESCHHHHHH-HGGGG-----
T ss_pred CCCCCCCHHHHHHhhcccc-------ccccHHHHHHHHHHHHHHHHHhCCC-CCCcEEEEcCCcHHHHH-HHHhh-----
Confidence 3455666668888876432 1123344678899999999999996 5 78999999999999 87765
Q ss_pred cCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCC
Q 012991 124 EGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSM 202 (452)
Q Consensus 124 ~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~ 202 (452)
+++||+|+++++.|++. .+..++...|.+++.+++ +.++.+ ++++++++++ .++++|++++++||
T Consensus 74 ---~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~----~~~~~~d~~~l~~~i~~-----~~~~~v~~~~~~np 139 (384)
T 3zrp_A 74 ---LKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRP----SPGDYVKPGEVEEEVRK-----SEYKLVALTHVETS 139 (384)
T ss_dssp ---CCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECC----STTCCCCHHHHHHHHHH-----SCEEEEEEESEETT
T ss_pred ---cCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecC----CCCCCCCHHHHHHHHHh-----CCCcEEEEeCCCCC
Confidence 58999999999999874 344446778999999954 333444 8999999952 36999999999999
Q ss_pred CcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCcee-
Q 012991 203 PCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVS- 281 (452)
Q Consensus 203 tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~- 281 (452)
+|.+.|+++|.++|++||+ ++|+|++|+.+..+.+....++|++++|+||+++|+.|+|++++++++++. +..+...
T Consensus 140 tG~~~~l~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~-~~~~~~~~ 217 (384)
T 3zrp_A 140 TGVREPVKDVINKIRKYVE-LIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSI-LDSQNSIA 217 (384)
T ss_dssp TTEECCHHHHHHHHGGGEE-EEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHH-HHHCCCSC
T ss_pred CceECcHHHHHHHHHhcCC-EEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHH-hcCCCCCC
Confidence 9999999999999999999 799999999999888888888999999999998889999999999887654 1011000
Q ss_pred ccCCC-Cccc---------ccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-
Q 012991 282 HEFGN-GLPI---------ESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP- 350 (452)
Q Consensus 282 ~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~- 350 (452)
.++.. .... .....|+++...+.++.++++++... +++.++++.+++++++.+.|.++ ++++..++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 294 (384)
T 3zrp_A 218 GYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKE--GIENRIKRHTMVASAIRAGLEAL-GLEIVARRP 294 (384)
T ss_dssp CSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSG
T ss_pred cccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcc
Confidence 00000 0000 11112477777777788888887765 89999999999999999999998 88776655
Q ss_pred c-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 351 E-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
. ..+++++|.++ +.+..++.+.|.++ ||.+..+..+ .. +++|++++.++|++|+
T Consensus 295 ~~~~~~~~~~~~~-------~~~~~~~~~~l~~~-gi~v~~g~~~---------------~~--~~iRi~~~~~~~~e~i 349 (384)
T 3zrp_A 295 ESYSNTVTGVILK-------VADPQKVLAGTVNE-GVEFAPGVHP---------------AF--KYFRIGHMGWVTPNDA 349 (384)
T ss_dssp GGBCSSEEEEECS-------SSCHHHHHHHHHTT-TCCCEECCCT---------------TC--CEEEEECCSSCCHHHH
T ss_pred cccCccEEEEECC-------CCCHHHHHHHHHHC-CEEEecCCCC---------------Cc--CEEEEeccccCCHHHH
Confidence 2 23567788886 25678899999875 9998755432 11 7999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 012991 430 EKFRDAVILLVEEG 443 (452)
Q Consensus 430 ~~l~~~l~~~~~~~ 443 (452)
++++++|++++++-
T Consensus 350 ~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 350 IIAISVIERTLRKL 363 (384)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998753
No 24
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=5.5e-35 Score=290.33 Aligned_cols=348 Identities=15% Similarity=0.152 Sum_probs=265.6
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEE-EecChhHHHHHHHHHh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEIS-LVDNATTAAAIVLQQI 118 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~-~t~g~t~a~~~~~~~l 118 (452)
.+++. .++...++.+.+++.+. ....+.....+..+++++++++++|++ .+.++ +++|+|+|+.+++.++
T Consensus 12 ~~~~~-p~p~~~~~~v~~a~~~~-------~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~~~~~~s~t~al~~~~~~l 82 (416)
T 3isl_A 12 RTIMT-PGPVEVDPRVLRVMSTP-------VVGQFDPAFTGIMNETMEMLRELFQTK-NRWAYPIDGTSRAGIEAVLASV 82 (416)
T ss_dssp CEECS-SSSCCCCHHHHHHTTSC-------CCCTTSHHHHHHHHHHHHHHHHHTTCC-CSEEEEEESCHHHHHHHHHHHH
T ss_pred ceeec-CCCcCcCHHHHHHhccc-------CCCCccHHHHHHHHHHHHHHHHHhCCC-CCcEEEecCcHHHHHHHHHHHh
Confidence 33444 44555666677776552 112233445678899999999999997 55555 8899999999999987
Q ss_pred hcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEe
Q 012991 119 GRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 119 ~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
+++||+|++++++|+++. +...++..|.+++.++++ .++.+ +++|++++++ +++++|+++
T Consensus 83 --------~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~i~~-----~~~~~v~~~ 143 (416)
T 3isl_A 83 --------IEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECE----WGTVFDPEDIIREIKK-----VKPKIVAMV 143 (416)
T ss_dssp --------CCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECC----TTCCCCHHHHHHHHHH-----HCCSEEEEE
T ss_pred --------cCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecC----CCCCCCHHHHHHHHhh-----CCCcEEEEE
Confidence 589999999999998742 343467789999999653 33344 8999999952 478999999
Q ss_pred ccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC
Q 012991 198 HITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH 277 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~ 277 (452)
+++||||.+.|+++|.++|++||+ ++|+|++|+.|..+++....++|++++|+|||++|+.|+|++++++++++. +..
T Consensus 144 ~~~nptG~~~~l~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~-~~~ 221 (416)
T 3isl_A 144 HGETSTGRIHPLKAIGEACRTEDA-LFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADV-IAA 221 (416)
T ss_dssp SEETTTTEECCCHHHHHHHHHTTC-EEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHH-HHT
T ss_pred ccCCCCceecCHHHHHHHHHHcCC-EEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHH-hhc
Confidence 999999999999999999999999 799999999999888888888999999999999999999999999887654 111
Q ss_pred Cc---ee--------ccCCCCc---------------ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 278 PV---VS--------HEFGNGL---------------PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 278 ~~---~~--------~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
.. .. ...|+.. ....+..++++...+.++.++++.+.+. |++.++++.++++
T Consensus 222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~ 299 (416)
T 3isl_A 222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEE--GLETRFERHRHHE 299 (416)
T ss_dssp C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHH
T ss_pred cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence 00 00 0000000 0112235677777888888888888765 8999999999999
Q ss_pred HHHHHHHHHHcCCCcCCCccc-ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLGSPPEI-CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
+++.+.|.+. ++++..++.. .+.++++.++ ++.+..++.+.|.+++||.+..+..+
T Consensus 300 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~~gi~v~~g~~~---------------- 356 (416)
T 3isl_A 300 AALAAGIKAM-GLRLFGDDSCKMPVVTCVEIP------GGIDGESVRDMLLAQFGIEIASSFGP---------------- 356 (416)
T ss_dssp HHHHHHHHHT-TCCBCSCGGGBCTTEEEEECC------TTCCHHHHHHHHHHHHCEECBCCCST----------------
T ss_pred HHHHHHHHHc-CCEeccCccccCCcEEEEeCC------CCCCHHHHHHHHHHhCCEEEecCCCC----------------
Confidence 9999999986 8887766542 3578888886 35577889999977569999765432
Q ss_pred CccceEEecccccCCHHH-HHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLED-YEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~d-i~~l~~~l~~~~~~ 442 (452)
..++++|++++.+++.+| +++++++|++++++
T Consensus 357 ~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 357 LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence 345799999977777777 99999999999875
No 25
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=5.4e-36 Score=289.69 Aligned_cols=342 Identities=12% Similarity=0.061 Sum_probs=252.4
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-----hhhhhhHHHHHHHHHHHhHhCCCCCCcEEE-ecChhHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-----YFNSLRKGILESRAAVKDLINADDVGEISL-VDNATTAAA 112 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~i~~-t~g~t~a~~ 112 (452)
++++|+ +++.+.|++|++++...+..+.+++.+. .+..+.+.++++|+.+++++|++++.+|+| |+|+|++++
T Consensus 5 ~~~~f~-pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n 83 (361)
T 3m5u_A 5 RKINFS-AGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFA 83 (361)
T ss_dssp CCEECC-SSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred ceEeec-CCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHH
Confidence 344444 5677888889999999877666666542 234667899999999999999974568888 999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH--H-HHHHHHHHhccccCCC
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE--I-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~--~-~~~l~~~i~~~~~~~~ 189 (452)
+++.++ + +++++++....+.+. .|...+++.|++++.++.++ .+. . ++. + | .+
T Consensus 84 ~~~~~~--------~-~~~~~~~i~~~~~~~--~~~~~a~~~G~~v~~~~~~~----~g~~~~~~~~-~--l------~~ 139 (361)
T 3m5u_A 84 MIPMNL--------A-LNGVCEYANTGVWTK--KAIKEAQILGVNVKTVASSE----ESNFDHIPRV-E--F------SD 139 (361)
T ss_dssp HHHHHH--------C-CSSCEEEEECSHHHH--HHHHHHHHTTCCEEEEEECT----TTTSCSCCCC-C--C------CT
T ss_pred HHHHhc--------C-CCCeEEEEeCCHHHH--HHHHHHHHcCCceEEEeccc----CcCCCcCChh-h--c------CC
Confidence 999987 3 667553222223332 45555788899999996532 221 1 333 2 5 57
Q ss_pred ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
++++|.++|.+|.+|.+.|. +++ +|+ ++++|++|++|..++|+.. +|++++|+|||+ ||+|+|+++++++
T Consensus 140 ~t~lv~~~~~e~~tG~~~~~-----i~~-~~~-~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~-gp~G~g~l~~~~~ 209 (361)
T 3m5u_A 140 NADYAYICSNNTIYGTQYQN-----YPK-TKT-PLIVDASSDFFSRKVDFSN--IALFYGGVQKNA-GISGLSCIFIRKD 209 (361)
T ss_dssp TSSEEEEESEETTTTEECSS-----CCC-CSS-CEEEECGGGTTSSCCCCTT--EEEEEEETTTTS-SCTTCEEEEEEHH
T ss_pred CCCEEEEeCCCCCcceeCCc-----ccc-cCC-EEEEEcccccCCCCCCccc--CCEEEEechhcc-CCCccEEEEEcHH
Confidence 89999999999999999772 344 499 7999999999999999985 689999999986 8999999999998
Q ss_pred ccccCCCCC-ceeccCCCC-cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-Cc
Q 012991 270 ILSSDMHHP-VVSHEFGNG-LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SL 346 (452)
Q Consensus 270 ~~~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~ 346 (452)
+++. + .+ ......... ........+||++..++++.++++++.+. +|++++.++.+++++++++.|.+++++ .+
T Consensus 210 ~~~~-~-~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~-gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~ 286 (361)
T 3m5u_A 210 MLER-S-KNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQ-GGLDKVHEKNSQKATMLYECIDLSNGFYKG 286 (361)
T ss_dssp HHHH-H-HTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHHTSTTSEEE
T ss_pred HHhh-h-cCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHHHHHCCCeeec
Confidence 8754 1 11 110000000 00112334899999999999999999862 489999999999999999999998666 54
Q ss_pred CCCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 347 GSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 347 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
..++. ....++.|.+|+. .+.+ .++...|.+ +||.+..++.. .+.+|+|++.++|
T Consensus 287 ~~~~~~rs~~ivsf~~~~~----~~~~-~~~~~~L~~-~gI~~~~g~~~------------------~g~iRiS~~~~~t 342 (361)
T 3m5u_A 287 HADKKDRSLMNVSFNIAKN----KDLE-PLFVKEAEE-AGMIGLKGHRI------------------LGGIRASIYNALN 342 (361)
T ss_dssp SSCGGGBCSSEEEEEESSC----TTHH-HHHHHHHHH-TTEECCBCCTT------------------TCSEEEECCTTSC
T ss_pred cCCHHHcCCeEEEEECCCc----hhhh-HHHHHHHHH-CCCEEecCCCc------------------cCeEEEEccCCCC
Confidence 43333 3346888988720 1244 467788865 59998655432 2469999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
.+||++++++|+++.++
T Consensus 343 ~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 343 LDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998864
No 26
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=100.00 E-value=1.3e-33 Score=282.21 Aligned_cols=379 Identities=16% Similarity=0.194 Sum_probs=267.3
Q ss_pred hhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhh--hhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChh
Q 012991 31 DEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFY--FNSLRKGILESRAAVKDLINADDVGEISLVDNAT 108 (452)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t 108 (452)
++|+.. ++.+|||.+..++.|+.+.+++.+.+.....+|+..+ +....+..+++++++++++|++ ++++++|+|+|
T Consensus 11 ~~~~~~-~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t 88 (432)
T 3a9z_A 11 SVESPP-NRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGK-PQDIIFTSGGT 88 (432)
T ss_dssp --------CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHH
T ss_pred cccCCC-CCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEeCChH
Confidence 347754 6789999999888899999999998866444554322 3345677899999999999995 68999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCC-------------CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-H
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRN-------------DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-I 174 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g-------------~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~ 174 (452)
+|+.+++.++.+.+.....++| ++|+++..+|+++..++..+++..|.+++.++++. +++.+ +
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~---~~~~~d~ 165 (432)
T 3a9z_A 89 ESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSK---VNGQVEV 165 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCT---TTSSCCH
T ss_pred HHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCc---ccCCcCH
Confidence 9999999987421100000244 47778888888988888887777899999996421 13334 8
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcC----------CCEEEEecccccCCccccccccCc
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEG----------VDQVFVDAAHAMGSIKIDVKEIGA 244 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~----------~~~~ivD~a~~~g~~~~~~~~~~~ 244 (452)
++|++++ .+++++|++++++||||.++|+++|.++|++++ + ++|+|++|+.|..++++...++
T Consensus 166 ~~l~~~i------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~-~livDea~~~~~~~~~~~~~~~ 238 (432)
T 3a9z_A 166 EDILAAV------RPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRV-LVHTDAAQALGKRRVDVEDLGV 238 (432)
T ss_dssp HHHHHTC------CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCC-EEEEECTTTTTTSCCCHHHHCC
T ss_pred HHHHHhc------cCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCce-EEEEEchhhhCCcccChhhcCC
Confidence 9999988 568999999999999999999999999999999 9 7999999999887777666689
Q ss_pred cEEEEcCcccCcCCCCcEEEEEecCc-cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 245 DFYVSNLHKWFFCPPSVAFLYCRKSI-LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 245 d~~~~s~~K~l~g~~G~G~l~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
|++++|+||+ +|+. +|+++++++. ... + .+. .+++.. ......++++...+.++.++++++.+ +++++
T Consensus 239 d~~~~s~~K~-~g~~-~G~~~~~~~~~~~~-~-~~~---~~~~~~-~~~~~~~~~~~~~~~a~~aal~~~~~---~~~~~ 307 (432)
T 3a9z_A 239 DFLTIVGHKF-YGPR-IGALYVRGVGKLTP-L-YPM---LFGGGQ-ERNFRPGTENTPMIAGLGKAADLVSE---NCETY 307 (432)
T ss_dssp SEEEEEGGGT-TCCS-CEEEEETTBTTTBC-C-CCS---CCSSCG-GGGTSCSCCCHHHHHHHHHHHHHHHH---HHHHH
T ss_pred CEEEEehhHh-cCCc-ceEEEEccccccCC-c-Cce---eecCCc-cccccCCCcCHHHHHHHHHHHHHHHh---hHHHH
Confidence 9999999996 6777 8999998876 332 2 221 122211 12234467777777777778887765 67889
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcC--CC--c-ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLG--SP--P-EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDD 398 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~ 398 (452)
+++.+++++++.+.|.+++++.+. .+ . ...+.++.|.+++. +.+..++.+.+ .+|.+..+..+...
T Consensus 308 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l---~~i~~~~G~~~~~~- 378 (432)
T 3a9z_A 308 EAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGS-----QLRGYMVLAQC---QTLLASVGASCHSD- 378 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECST-----TCCHHHHHHHC---SSEECBSSCGGGGG-
T ss_pred HHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCC-----CCcHHHHHHHh---cCeEEeccccccCC-
Confidence 999999999999999987665432 33 1 12245777777521 22455666655 26766543322110
Q ss_pred CCCCCC--CCCCCCC----ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 399 GQPQAG--ARDKDGI----ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 399 ~~~~~~--~~~~~~~----~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+... .....+. ..+++|++++.++|++|+++++++|+++++.
T Consensus 379 -~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 379 -HEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp -GTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 00000 0000011 2479999999999999999999999998764
No 27
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=100.00 E-value=2.2e-33 Score=273.69 Aligned_cols=347 Identities=14% Similarity=0.123 Sum_probs=255.5
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhh-HHHHHHHHHHHhHhCCCC-CCcEEEecChhHHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLR-KGILESRAAVKDLINADD-VGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~~i~~t~g~t~a~~~~~~~ 117 (452)
++.++.+ +...|+.|.+++.+.+ . ..+ ..+. +...++++++++++|.++ .+++++|+|||+|+.+++.+
T Consensus 5 ~~~~~~g-p~~~~~~v~~a~~~~~----~---~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 5 YLLLTPG-PLTTSRTVKEAMLFDS----C---TWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp CEECSSS-SCCCCHHHHHTTCCCC----C---TTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCC-CcCCCHHHHHHHhhhh----c---CCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence 5677777 4456777999887632 1 111 1122 668899999999999431 24799999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeC-CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLH-CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~-~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
+ .++||+|++.+ +.|++.. ...+...|.+++.++++ .++.+ +++|++++++ ..++++|+
T Consensus 76 ~--------~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~----~~~~~~v~ 136 (366)
T 1m32_A 76 A--------LGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCG----EVARPDVQAIDAILNA----DPTISHIA 136 (366)
T ss_dssp S--------CCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECC----TTSCCCHHHHHHHHHH----CTTCCEEE
T ss_pred h--------cCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCC----CCCCCCHHHHHHHHhc----CCCeEEEE
Confidence 6 46888887665 6666532 22245669999999653 23334 8899999864 23688999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCC
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM 275 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l 275 (452)
+++++||||.+.|+++|.++|++||+ ++|+|++|+.+..++++..+++|++++|+||+++|+.|+|++++++++++. +
T Consensus 137 ~~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~-~ 214 (366)
T 1m32_A 137 MVHSETTTGMLNPIDEVGALAHRYGK-TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAA-C 214 (366)
T ss_dssp EESEETTTTEECCHHHHHHHHHHHTC-EEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTT-C
T ss_pred EecccCCcceecCHHHHHHHHHHcCC-EEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHh-h
Confidence 99999999999999999999999999 799999999988877777678999999999998899999999999988765 2
Q ss_pred CCCceeccCCCCcccc------cccccccCccccccHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q 012991 276 HHPVVSHEFGNGLPIE------SAWIGTRDYSAQLVIPSAVTFVSRFEGG-IDGIMQRNHEQALKMARMLANAWGTSLGS 348 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~al~~~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 348 (452)
........+....... ....++++...+.++.++++.+.+. | ++.++++.+++++++.+.|.++ ++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 291 (366)
T 1m32_A 215 KGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKE--GGVAARHQRYQQNQRSLVAGMRAL-GFNTLL 291 (366)
T ss_dssp TTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHHT-TCCBSS
T ss_pred cCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHc--cCHhHHHHHHHHHHHHHHHHHHHC-CCeecc
Confidence 2110000000000000 0012456666667777888887764 6 8889999999999999999987 777765
Q ss_pred Ccc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 349 PPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 349 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
++. ..+.++++.+++. .+.+..++.+.|.++ ||.+..+..+ ..+++|++++.+++++
T Consensus 292 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~-gi~v~~~~~~-----------------~~~~iRi~~~~~~~~~ 349 (366)
T 1m32_A 292 DDELHSPIITAFYSPED----PQYRFSEFYRRLKEQ-GFVIYPGKVS-----------------QSDCFRIGNIGEVYAA 349 (366)
T ss_dssp CGGGBCSSEEEEECCCC----TTCCHHHHHHHHHHT-TEECEECCCS-----------------SSCEEEEECCSSCCHH
T ss_pred CchhcCceEEEEEcCcc----CCCCHHHHHHHHHHC-CEEEECCcCC-----------------CCCEEEEecCCCCCHH
Confidence 532 2245888888620 034677899999775 9999765432 2479999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 012991 428 DYEKFRDAVILLVE 441 (452)
Q Consensus 428 di~~l~~~l~~~~~ 441 (452)
|+++++++|+++++
T Consensus 350 ~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 350 DITALLTAIRTAMY 363 (366)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 28
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=3.7e-34 Score=278.83 Aligned_cols=340 Identities=11% Similarity=0.080 Sum_probs=254.0
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
.++++.+ +...|+.+.+++.+.+..... ...+....+.+..+++++.+++++|.++++++++|+|+|+|+.+++.++
T Consensus 5 ~~~~~p~-p~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l- 81 (362)
T 3ffr_A 5 KIYFTPG-PSELYPTVRQHMITALDEKIG-VISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNC- 81 (362)
T ss_dssp CEEECSS-SCCCCTTHHHHHHHHHHTTTT-TSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHH-
T ss_pred ceeccCC-CcCCCHHHHHHHHHHhcCCcc-CcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhc-
Confidence 4455544 555566688888776643210 0112234456788999999999999865678999999999999999987
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
.++ ++++..+.|++. .+..++...|++++.++.+ .++.+ +++++ + ++++++|++++
T Consensus 82 -------~~~--~~i~~~~~~~~~--~~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~--~------~~~~~~v~~~~ 138 (362)
T 3ffr_A 82 -------VEK--KSFHCVNGSFSK--RFYEFAGELGREAYKEEAA----FGKGFYPADIT--V------PADAEIICLTH 138 (362)
T ss_dssp -------CSS--EEEEEECSHHHH--HHHHHHHHTTCEEEEEECC----TTCCCCGGGCC--C------CTTCCEEEEES
T ss_pred -------cCC--cEEEEcCcHHHH--HHHHHHHHhCCCeEEEecC----CCCCCCHHHHh--c------cCCccEEEEEc
Confidence 344 666555555542 3333467789999999653 22223 56666 4 68899999999
Q ss_pred cCCCCcccccHHHHHHHHHHc-CCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC
Q 012991 199 ITSMPCVVIPVRKLVKICRDE-GVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH 277 (452)
Q Consensus 199 ~~n~tG~~~~l~~i~~l~~~~-~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~ 277 (452)
++||||.++|+++|.++|++| |+ ++|+|++++.+..+.+... +|++++|+||+++++.|+|++++++++++. + .
T Consensus 139 ~~nptG~~~~l~~i~~la~~~p~~-~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~-~-~ 213 (362)
T 3ffr_A 139 NETSSGVSMPVEDINTFRDKNKDA-LIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEK-S-K 213 (362)
T ss_dssp EETTTTEECCHHHHTTSGGGSTTS-EEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHH-H-H
T ss_pred CCCCcceeCCHHHHHHHHHhCCCC-EEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHH-h-h
Confidence 999999999999999999999 99 7999999999988777654 899999999997779999999999887664 1 1
Q ss_pred CceeccCCCCc-----c--------cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 278 PVVSHEFGNGL-----P--------IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 278 ~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
+... |++. . ......++++...+.++.++++++... |++.+.++.+++++++.+.|.+++++
T Consensus 214 ~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~ 288 (362)
T 3ffr_A 214 ALLA---KRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQI--SADGIRKQTEEKAALINTYIESSKVF 288 (362)
T ss_dssp HHHH---TTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred hccc---cCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 1110 0000 0 001124677777777888888887764 78999999999999999999998888
Q ss_pred CcCCCc--ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc
Q 012991 345 SLGSPP--EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 345 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
++..+. .....+++|.++ + +..++.+.|.++ ||.+..++.+ ..++++|+|++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~l~~~-gi~~~~g~~~----------------~~~~~iRis~~~ 343 (362)
T 3ffr_A 289 SFGVEDAKLRSMTTIVANTT-------M-LPGEINKILEPF-DMAVGAGYGS----------------KKETQIRIANFP 343 (362)
T ss_dssp EESSSCGGGBCSSEEEEEES-------S-CHHHHHHHHGGG-TEEEEECSGG----------------GTTTEEEEECCT
T ss_pred eeccCChhhcCCceEEEecC-------C-CHHHHHHHHHHC-CeEEecCccc----------------cCCCEEEEECCC
Confidence 776532 223667888886 2 678899999876 9999866543 335799999999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 012991 423 YNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 423 ~~t~~di~~l~~~l~~~~ 440 (452)
+++++|+++++++|+++.
T Consensus 344 ~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 344 AHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 29
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.2e-33 Score=273.94 Aligned_cols=342 Identities=17% Similarity=0.114 Sum_probs=253.6
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhc
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~ 120 (452)
.|++.+...+.| .+.+++.+.+.....++.. .....+..++++++++++++++ ++++++|+|||+|+.+++.++..
T Consensus 33 ~~~~~~~~~~~~-~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~-~~~i~~~~ggt~a~~~~~~~~~~ 108 (397)
T 3f9t_A 33 NIFGSMCSNVLP-ITRKIVDIFLETNLGDPGL--FKGTKLLEEKAVALLGSLLNNK-DAYGHIVSGGTEANLMALRCIKN 108 (397)
T ss_dssp CBCSCSCCCCCT-HHHHHHHHHTTCCTTSGGG--BHHHHHHHHHHHHHHHHHTTCT-TCEEEEESCHHHHHHHHHHHHHH
T ss_pred CeEEEecCCCcH-HHHHHHHHHHhhcCCCccc--ChhHHHHHHHHHHHHHHHhCCC-CCCEEEecCcHHHHHHHHHHHHH
Confidence 467766555555 4888888876532222221 1245677889999999999996 78999999999999999998853
Q ss_pred ccc-----cCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 121 GFT-----EGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 121 ~~~-----~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.+. .....+||+|+++.++|++....+.. .|.+++.++. +.++.+ +++|++++++ .++++|
T Consensus 109 ~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~----~~~~~~d~~~l~~~i~~-----~~~~~v 175 (397)
T 3f9t_A 109 IWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM----MDLEYIYAPI----KEDYTIDEKFVKDAVED-----YDVDGI 175 (397)
T ss_dssp HHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH----HTCEEEEECB----CTTSSBCHHHHHHHHHH-----SCCCEE
T ss_pred HHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH----cCceeEEEee----CCCCcCCHHHHHHHHhh-----cCCeEE
Confidence 210 00113589999999999997766644 4999999954 444444 8999999952 278999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc--------------cccccccCccEEEEcCcccCcCCCC
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI--------------KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~--------------~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
++++++||||.+.|+++|.++|++||+ ++|+|++|+.+.. ++++.. ++|++++|+||+++++.+
T Consensus 176 ~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~ 253 (397)
T 3f9t_A 176 IGIAGTTELGTIDNIEELSKIAKENNI-YIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIP 253 (397)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHHTC-EEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSS
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHhCC-eEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCC
Confidence 999999999999999999999999999 7999999986543 344445 789999999998777878
Q ss_pred cEEEEEecCccccCCC--CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMH--HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|+++++++.+...+. .++. .+. ......++++.....++.+++..+... +++...++.+++++++.+.|
T Consensus 254 ~g~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~L 325 (397)
T 3f9t_A 254 SGGILFKDIGYKRYLDVDAPYL---TET---RQATILGTRVGFGGACTYAVLRYLGRE--GQRKIVNECMENTLYLYKKL 325 (397)
T ss_dssp CEEEEESSGGGGGGTCEECTTS---SSS---EECSSCSSCCSHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCHHHHHhhccCCccc---cCC---CccccccccccchHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999887765443110 1111 111 011223455555666677777776643 78889999999999999999
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
.++ ++.+..++. ++++++..+ +..++.+.|.++ ||.+..+. .++++|+
T Consensus 326 ~~~-g~~~~~~~~--~~~~~~~~~---------~~~~~~~~l~~~-gi~v~~~~-------------------~~~~~Ri 373 (397)
T 3f9t_A 326 KEN-NFKPVIEPI--LNIVAIEDE---------DYKEVCKKLRDR-GIYVSVCN-------------------CVKALRI 373 (397)
T ss_dssp HHT-TCCBSSCCS--SSEEEEECT---------THHHHHHHHHHT-TCBCEECS-------------------SSSEEEE
T ss_pred HHC-CCEEEcCCC--ccEEEEEeC---------CHHHHHHHHHhC-CeEEeccC-------------------CCCEEEE
Confidence 998 887665543 678888775 256888999775 99886432 2479999
Q ss_pred cccccCCHHHHHHHHHHHHHHHh
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+++.++|++|+++++++|+++++
T Consensus 374 ~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 374 VVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEcCCCCHHHHHHHHHHHHHhhC
Confidence 99988999999999999998764
No 30
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=100.00 E-value=6.2e-34 Score=279.01 Aligned_cols=349 Identities=15% Similarity=0.140 Sum_probs=252.2
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEE-EecChhHHHHHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEIS-LVDNATTAAAIVLQQ 117 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~-~t~g~t~a~~~~~~~ 117 (452)
.+.+|+.+ +.+.|+.+.+++.+.+. .++.....+..+++++++++++|++...+++ +|+|||+|+.+++.+
T Consensus 19 ~~~~~~pg-p~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~ 90 (376)
T 3f0h_A 19 GMLNFTVG-PVMSSEEVRAIGAEQVP-------YFRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMN 90 (376)
T ss_dssp SCEECSSS-SCCCCHHHHHHHTSCCC-------CCSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHH
T ss_pred CceeecCC-CCCCcHHHHHHhcCCCC-------CCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHh
Confidence 34555544 55666678888876431 1122334577899999999999996333555 588999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ +++||+|+++++.|++.. +...+...|.++..++.+ .++.+ ++++++.+ ++++++|++
T Consensus 91 ~--------~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~----~~~~~d~~~l~~~~------~~~~~~v~~ 150 (376)
T 3f0h_A 91 C--------FTKKDKVLVIDGGSFGHR--FVQLCEIHEIPYVALKLE----HGKKLTKEKLYEYD------NQNFTGLLV 150 (376)
T ss_dssp H--------CCTTCCEEEEESSHHHHH--HHHHHHHTTCCEEEEECC----TTCCCCHHHHHTTT------TSCCCEEEE
T ss_pred c--------cCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCC----CCCCCCHHHHHHhh------ccCceEEEE
Confidence 7 489999999988777643 223357779999998653 22333 78888876 578999999
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH 276 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~ 276 (452)
++++||||.++|+++|.++|++||+ ++|+|++++.+..++++...++|++++|+||+++++.|+|++++++++++. +.
T Consensus 151 ~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~-~~ 228 (376)
T 3f0h_A 151 NVDETSTAVLYDTMMIGEFCKKNNM-FFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVER-VE 228 (376)
T ss_dssp ESEETTTTEECCHHHHHHHHHHTTC-EEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHH-HH
T ss_pred ecccCCcceecCHHHHHHHHHHcCC-EEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHH-hh
Confidence 9999999999999999999999999 799999999998888777778999999999998779999999999887664 21
Q ss_pred CCceeccCCC-Ccc----cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc
Q 012991 277 HPVVSHEFGN-GLP----IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE 351 (452)
Q Consensus 277 ~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 351 (452)
.......+.. ... .......+++...++++.++++++.+. ++++.++++.+++++++.+.|.++ ++++..+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 306 (376)
T 3f0h_A 229 KSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKH-GGADAEVARIASQAADFRAKIKDL-PFELVSESP 306 (376)
T ss_dssp TCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSB
T ss_pred cCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHc-CCccCcccc
Confidence 1100000000 000 000112344444446677788877752 258889999999999999999876 565554332
Q ss_pred cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHH
Q 012991 352 ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEK 431 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 431 (452)
...++.+.. .+.+..++.+.|.+++||.++.+... ..++++|++++.++|++|+++
T Consensus 307 -~~~~~~~~~-------~~~~~~~l~~~l~~~~gi~v~~g~~~----------------~~~~~lRis~~~~~t~e~i~~ 362 (376)
T 3f0h_A 307 -ANGVTSVHP-------TTANAYDIFLKLKDEYGIWICPNGGE----------------MKDTIFRVGHIGALTHEDNTT 362 (376)
T ss_dssp -BTTEEEEEE-------SSSCHHHHHHHHHHHSSEECEECCGG----------------GTTTCEEEECCSSCCHHHHHH
T ss_pred -CceEEEEeC-------CCCCHHHHHHHHHHhCCEEEecCccc----------------cCCCEEEEecCCCCCHHHHHH
Confidence 233444433 24567889999987669999765321 235799999998899999999
Q ss_pred HHHHHHHHHhcc
Q 012991 432 FRDAVILLVEEG 443 (452)
Q Consensus 432 l~~~l~~~~~~~ 443 (452)
++++|+++++++
T Consensus 363 ~~~~l~~~l~~~ 374 (376)
T 3f0h_A 363 LVNAFKDLQKRN 374 (376)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
No 31
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=1.3e-33 Score=276.07 Aligned_cols=354 Identities=16% Similarity=0.142 Sum_probs=253.1
Q ss_pred CCCeEEecc-CCCCCCcHHHHHHHHHHHHHHhc--CC-chhhhhhhhHHHHHHHHH-HHhHhCCCCCCcEEEecChhHHH
Q 012991 37 QHGVARINN-GSFGSCPKSVLADQQKWQLKFLQ--QP-DDFYFNSLRKGILESRAA-VKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 37 ~~~~~~l~~-~~~~~~p~~v~e~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.+.++||+. .+.++.|+.+.+++.+.+..... .+ .....+...+...+++++ ++++++.+ ++++|+|+|+|+
T Consensus 6 ~~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~~g~t~a~ 82 (371)
T 2e7j_A 6 TKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVTNGAREAK 82 (371)
T ss_dssp --CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEESSHHHHH
T ss_pred CCCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEeCChHHHH
Confidence 356899998 44678888899999887754311 00 111234456678999999 99999984 999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++ +++||+|++++++|++....+ ...|.+++.++.+ .+.++.+ +++|++.+++... .++
T Consensus 83 ~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~~--~~~~~~~d~~~l~~~l~~~~~-~~~ 147 (371)
T 2e7j_A 83 FAVMHSL--------AKKDAWVVMDENCHYSSYVAA----ERAGLNIALVPKT--DYPDYAITPENFAQTIEETKK-RGE 147 (371)
T ss_dssp HHHHHHH--------CCTTCEEEEETTCCHHHHHHH----HHTTCEEEEECCC--CTTTCCCCHHHHHHHHHHHTT-TSC
T ss_pred HHHHHHH--------hCCCCEEEEccCcchHHHHHH----HHcCCeEEEeecc--cCCCCCcCHHHHHHHHHhhcc-cCC
Confidence 9999987 478999999999999987764 4569999999521 3333334 8899998853211 157
Q ss_pred eEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCc
Q 012991 191 IRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSI 270 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~ 270 (452)
+++|++++++||+|.+.|+++|.++|++||+ ++|+|++|+.+..+.+...+++|++++|+||+++++.++|++++++++
T Consensus 148 ~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~ 226 (371)
T 2e7j_A 148 VVLALITYPDGNYGNLPDVKKIAKVCSEYDV-PLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEW 226 (371)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHTTTC-CEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTT
T ss_pred eEEEEEECCCCCCcccCCHHHHHHHHHHcCC-eEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechh
Confidence 9999999999999999999999999999999 699999999988777766668899999999998888889999999886
Q ss_pred cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH--HHHHHHHHHHHHHHcCCCcCC
Q 012991 271 LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN--HEQALKMARMLANAWGTSLGS 348 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~--~~~~~~l~~~L~~~~~~~~~~ 348 (452)
++. ...+.. .+... ...+..++++.....++.++++++.. .+.++. +++++++.+.|.++ ++++..
T Consensus 227 ~~~-~~~~~~---~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~------~~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 294 (371)
T 2e7j_A 227 AEI-VLRRSE---KYKNK-EVELLGCTARGATIITLMASFPHVRE------RIKRWDEEVEKARRFAAEMEKL-GIKQLG 294 (371)
T ss_dssp TTT-TTCBCS---SCTTS-BGGGTTCCCCSHHHHHHHHHHHHHHH------HGGGHHHHHHHHHHHHHHHHHT-TCEEES
T ss_pred hhh-hccccc---cCccc-ccccccCCcCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHc-CcEEec
Confidence 542 011211 00000 00111356666666666666666552 456677 88899999999887 877665
Q ss_pred CcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE-eccccc-CCH
Q 012991 349 PPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR-ISHQVY-NTL 426 (452)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR-is~~~~-~t~ 426 (452)
+....++++++.++ +..++.+.|.+ +||.+.. ..+... ..+..++++| ++++.+ +++
T Consensus 295 ~~~~~~~~~~~~~~---------~~~~~~~~l~~-~gi~~~~-~~~~~~----------~~g~~~~~iRii~~~~~~~~~ 353 (371)
T 2e7j_A 295 DNPHNHDLMFFHAE---------VLYEISKKAKG-GRFFLYR-ELKSRK----------IHGIKPGLTRYFKLSTYGLSD 353 (371)
T ss_dssp SSSCCSSEEEEECH---------HHHHHHHHSSS-GGGHHHH-HHHHTT----------EECSCTTCCSEEEEECTTCCH
T ss_pred CCCccCceEEEECC---------CHHHHHHHHHH-CCEEEEe-cccccc----------ccCCCCCceEEEEeeccCCCH
Confidence 54223678888763 56788899875 5999854 221000 0001257899 999988 899
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+|+++++++|++++++
T Consensus 354 ~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 354 EEVDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 32
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=4.3e-32 Score=275.59 Aligned_cols=379 Identities=12% Similarity=-0.005 Sum_probs=263.8
Q ss_pred CCCCHHHHHh----hhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCC
Q 012991 22 RCISEAEIRD----EFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADD 97 (452)
Q Consensus 22 ~~~~~~~ir~----~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 97 (452)
..++.+.+.+ .....+.+.+++....+.+.++.+.+++.+.+.....++.. .....++.+++++++++++|++.
T Consensus 35 ~~~~~~~~~~~~~~~i~l~gnp~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~--~p~~~~le~~~~~~la~l~g~~~ 112 (502)
T 3hbx_A 35 NSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDE--YPVTTELQNRCVNMIAHLFNAPL 112 (502)
T ss_dssp SCCCHHHHHHHHHHHGGGSCCGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCTTT--CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHhccCCCCCceeccccCCCCCHHHHHHHHHHhccCCCChhc--ChhHHHHHHHHHHHHHHHhCCCc
Confidence 3455555444 33334445555554444566777888888765432222211 13356777889999999999961
Q ss_pred -CCc---EEEecChhHHHHHHHHHhhcccccCCCCCCC-----EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 012991 98 -VGE---ISLVDNATTAAAIVLQQIGRGFTEGRFHRND-----TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLA 168 (452)
Q Consensus 98 -~~~---i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~-----~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~ 168 (452)
+++ .++|+|||+|+.+++.++.+.+......+|+ +|+++.++|.++.... ...|++++.+++ +
T Consensus 113 ~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~----~~~G~~~~~v~~----~ 184 (502)
T 3hbx_A 113 EEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFA----RYFEVELKEVKL----S 184 (502)
T ss_dssp CSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHH----HHTTCEEEEECC----B
T ss_pred ccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHH----HHcCceeEEEec----C
Confidence 223 3469999999999998875432110001244 9999999999876554 556999999954 3
Q ss_pred Ch-HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc------CCCEEEEecccccCC------
Q 012991 169 SE-EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE------GVDQVFVDAAHAMGS------ 234 (452)
Q Consensus 169 ~~-~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~------~~~~~ivD~a~~~g~------ 234 (452)
++ +.+ +++|++++ .++|++|++++++|++|.+.|+++|.++|+++ |+ ++|+|+|++.+.
T Consensus 185 ~~~~~~d~~~l~~~i------~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~-~l~VD~A~~~~~~p~~~~ 257 (502)
T 3hbx_A 185 EGYYVMDPQQAVDMV------DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDT-PIHVDAASGGFIAPFLYP 257 (502)
T ss_dssp TTBCSCCHHHHHHHC------CTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCC-CEEEECTTGGGTHHHHCT
T ss_pred CCcCcCCHHHHHHHH------hhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCC-eEEEECCccchhhhhhCc
Confidence 32 445 89999999 57899999999999999999999999999999 99 599999998543
Q ss_pred -ccccccccCccEEEEcCcccCcCCCCcEEEEEecC-ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 235 -IKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 235 -~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
.+.++...++|++++++|||+++|.|+|++++++. .+.. . ......+.+... ......++.+...++++.+++..
T Consensus 258 ~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~-~-~~~~~~yl~~~~-~~~~~~~sr~~~~~~a~~~al~~ 334 (502)
T 3hbx_A 258 ELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPE-E-LIFHINYLGADQ-PTFTLNFSKGSSQVIAQYYQLIR 334 (502)
T ss_dssp TCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCG-G-GCEEECSSSSCE-EECCSCCSCBSHHHHHHHHHHHH
T ss_pred ccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhH-H-hccCcccccCCC-CCccccCCchHHHHHHHHHHHHH
Confidence 23444445799999999999889999999888754 3322 1 011111112111 11112244444455667777776
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC-cccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeec
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP-PEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIH 391 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~ 391 (452)
+... |+..+.++..++++++.+.|.+++++++..+ +. .++++|.++.. ...+..++.+.|.++ ||.++..
T Consensus 335 lg~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~--~~~v~f~~~~~----~~~~~~~l~~~L~~~-Gi~v~~~ 405 (502)
T 3hbx_A 335 LGHE--GYRNVMENCRENMIVLREGLEKTERFNIVSKDEG--VPLVAFSLKDS----SCHTEFEISDMLRRY-GWIVPAY 405 (502)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSS--SSEEEEEESSC----SSCCHHHHHHHHHTT-TCBCCEE
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCC--ceEEEEEecCC----CcCCHHHHHHHHHhC-CcEEeec
Confidence 6543 7888999999999999999999877887765 33 67889988621 134667899999775 9998654
Q ss_pred ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 392 YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+.. .....++|++++..+|.+|++++++.|+++++.
T Consensus 406 ~~p~~-------------~~~~~~lRisv~~~~t~edid~li~~L~~~l~~ 443 (502)
T 3hbx_A 406 TMPPN-------------AQHITVLRVVIREDFSRTLAERLVIDIEKVMRE 443 (502)
T ss_dssp ECCTT-------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCcc-------------cCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 33321 123468999999999999999999999998863
No 33
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=1.7e-32 Score=269.42 Aligned_cols=349 Identities=13% Similarity=0.118 Sum_probs=250.2
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC---CCCcEEEecChhHHHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD---DVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~i~~t~g~t~a~~~~~ 115 (452)
..+.|.. ++...++.+.+++.+.... ++.........++++.++++++.. +++++++|+|||+|+.+++
T Consensus 5 ~~~~~~p-~p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~ 76 (385)
T 2bkw_A 5 VDTLLIP-GPIILSGAVQKALDVPSLG-------HTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFA 76 (385)
T ss_dssp CCEECSS-SSCCCCHHHHHTTSCCCCC-------TTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHH
T ss_pred cceeecC-CCcCchHHHHHHHhccccc-------cCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHH
Confidence 3444444 4556666688888754321 111222345677888888888763 1479999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.++.+. .++||+|++..+.+++.. +...+...|.+++.+++. +.++.+ +++|++++++ .++++|
T Consensus 77 ~~~~~~-----~~~gd~vlv~~~~~~~~~--~~~~~~~~g~~~~~v~~~---~~~~~~d~~~l~~~l~~-----~~~~~v 141 (385)
T 2bkw_A 77 SNFILS-----KAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRPL---KIGESVPLELITEKLSQ-----NSYGAV 141 (385)
T ss_dssp HHHSCT-----TCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEECCS---STTSCCCHHHHHHHHHH-----SCCSEE
T ss_pred HHHhcc-----CCCCCeEEEEcCCcchHH--HHHHHHHcCCceEEEecC---CCCCCCCHHHHHHHHhc-----CCCCEE
Confidence 987311 278999988855433222 112246679999999541 333434 8999999952 378999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccc
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILS 272 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~ 272 (452)
++++++||||.+.|+++|.++|++| |+ ++|+|++|+.|..++++..+++|++++|+|||++|+.|+|+++++++.+.
T Consensus 142 ~~~~~~nptG~~~~l~~i~~~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~ 220 (385)
T 2bkw_A 142 TVTHVDTSTAVLSDLKAISQAIKQTSPET-FFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMD 220 (385)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHCTTS-EEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHH
T ss_pred EEEccCCCcCeEcCHHHHHHHHHhhCCCC-EEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHH
Confidence 9999999999999999999999999 99 79999999998887777777899999999999899999999999887765
Q ss_pred -cCCC----CCceeccCCCCc-cc----c------cccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 273 -SDMH----HPVVSHEFGNGL-PI----E------SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 273 -~~l~----~~~~~~~~~~~~-~~----~------~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
. +. .+... ++... .. . ..+.++++...++++.++++++.+. |++.++++.+++++++.+
T Consensus 221 ~~-l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~l~~ 295 (385)
T 2bkw_A 221 YA-LNDSKNGHVHG--YFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEE--GLHKRWDLHREMSDWFKD 295 (385)
T ss_dssp HH-TCHHHHCCCSC--STTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHH
T ss_pred HH-HhhccCCCCCc--eeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHH
Confidence 3 21 00000 11100 00 0 0112466666777777888887754 789999999999999999
Q ss_pred HH-HHHcCCCcCCCc--c-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 337 ML-ANAWGTSLGSPP--E-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 337 ~L-~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
.| .++ ++++..+. . ..++++++.++ + ..++.+.|.+ .||.+..+..+ ...
T Consensus 296 ~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~l~~-~gi~v~~g~~~---------------~~~ 349 (385)
T 2bkw_A 296 SLVNGL-QLTSVSRYPSNMSAHGLTAVYVA-------D--PPDVIAFLKS-HGVVIAGGIHK---------------DIG 349 (385)
T ss_dssp HHHTTT-CCEESSCSSSTTBCSSCEEEECS-------C--HHHHHHHHHH-TTEECBCCCCT---------------TTG
T ss_pred HHHHhc-CceecccCcccccCCceEEEecC-------C--HHHHHHHHHH-CCeEEeCCCCc---------------ccC
Confidence 99 877 77766432 1 24778888886 2 5678888876 59999765432 124
Q ss_pred cceEEec-ccc---cCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARIS-HQV---YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis-~~~---~~t~~di~~l~~~l~~~~~~ 442 (452)
++++|++ ++. .+|++|+++++++|++++++
T Consensus 350 ~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 350 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp GGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred CCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 5799999 652 46999999999999998753
No 34
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=1.2e-31 Score=269.45 Aligned_cols=382 Identities=12% Similarity=-0.031 Sum_probs=256.7
Q ss_pred CCCCCCHHHHHhhhccC--CCCeEEeccCCC--CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCC
Q 012991 20 LTRCISEAEIRDEFSHH--QHGVARINNGSF--GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINA 95 (452)
Q Consensus 20 ~~~~~~~~~ir~~~~~~--~~~~~~l~~~~~--~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 95 (452)
|...++.+++-+++... .......+.+.+ .+.++.+.+++.+.+.....++. ......++.+++++++++++|+
T Consensus 19 p~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~~~~~--~~~~~~~l~~~~~~~la~l~g~ 96 (452)
T 2dgk_A 19 PLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKE--EYPQSAAIDLRCVNMVADLWHA 96 (452)
T ss_dssp CCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBTTCTT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCCCChh--hChhHHHHHHHHHHHHHHHhCC
Confidence 33566666665544321 122222222222 34555677777665432111111 1244567788999999999999
Q ss_pred CCCCc-----EEEecChhHHHHHHHHHhhcccccCCCCC-----CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCC
Q 012991 96 DDVGE-----ISLVDNATTAAAIVLQQIGRGFTEGRFHR-----NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPF 165 (452)
Q Consensus 96 ~~~~~-----i~~t~g~t~a~~~~~~~l~~~~~~~~~~~-----g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~ 165 (452)
+ .+. +++|+|||+|+.+++.++...+......+ +++|++++ .|.++..+. ...|++++.+++
T Consensus 97 ~-~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~----~~~G~~v~~v~~-- 168 (452)
T 2dgk_A 97 P-APKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFA----RYWDVELREIPM-- 168 (452)
T ss_dssp C-CCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHH----HHTTCEEEECCC--
T ss_pred C-cccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHH----HHcCceEEEEec--
Confidence 7 444 89999999999999887742110000012 36999999 998866554 456999999954
Q ss_pred CCCC-hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc------CCCEEEEecccccCCc--
Q 012991 166 PLAS-EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE------GVDQVFVDAAHAMGSI-- 235 (452)
Q Consensus 166 ~~~~-~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~------~~~~~ivD~a~~~g~~-- 235 (452)
+. ++.+ +++|+++| +++|++|++++++|+||.+.|+++|+++|+++ |+ ++|+|++++.+..
T Consensus 169 --~~~~~~~d~~~l~~~i------~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~-~l~vD~a~~~~~~~~ 239 (452)
T 2dgk_A 169 --RPGQLFMDPKRMIEAC------DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDI-DMHIDAASGGFLAPF 239 (452)
T ss_dssp --BTTBCSCCHHHHHHHC------CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCC-CEEEECTTGGGTHHH
T ss_pred --CCCCCeECHHHHHHHH------hhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCC-cEEEEcccHHHHHHh
Confidence 32 3445 89999999 57899999999999999999999999999996 99 5999999987653
Q ss_pred -----cccccccCccEEEEcCcccCcCCCCcEEEEEecC-cc-ccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 236 -----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS-IL-SSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 236 -----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
+.++...++|++++|+|||+++|.|+|+++++++ .+ .. + . ....+..+........++.+....+++.+
T Consensus 240 ~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~a 315 (452)
T 2dgk_A 240 VAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQE-L-V--FNVDYLGGQIGTFAINFSRPAGQVIAQYY 315 (452)
T ss_dssp HCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGG-G-C--EEECCTTCCEEECCSCCSCBCHHHHHHHH
T ss_pred hCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHH-h-c--cCccccCCCCCCcccCCCChhHHHHHHHH
Confidence 2343344789999999999889999999999764 33 22 1 1 11111111101111123444445556666
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhhhcce
Q 012991 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGV 386 (452)
Q Consensus 309 al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 386 (452)
+++.+... |++.+.++..++++++.+.|.+++++++..+.. ...++++|.++... ....+..++.+.|.++ ||
T Consensus 316 al~~lg~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~--~~~~~~~~l~~~L~~~-Gi 390 (452)
T 2dgk_A 316 EFLRLGRE--GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE--DPGYTLYDLSERLRLR-GW 390 (452)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTC--CCSCCHHHHHHHHHHT-TC
T ss_pred HHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcc--cccCCHHHHHHHHHhc-CC
Confidence 77766543 788999999999999999999987787764421 23678888886210 0123557899999775 99
Q ss_pred EeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 387 EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++....+.. ....+++|++++.++|.+|++++++.|+++++.
T Consensus 391 ~v~~~~~~~~-------------~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 391 QVPAFTLGGE-------------ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY 433 (452)
T ss_dssp BCCEEECSTT-------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeCCcc-------------cCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 8754322211 123468999999999999999999999998754
No 35
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=100.00 E-value=1.9e-32 Score=267.12 Aligned_cols=343 Identities=12% Similarity=0.074 Sum_probs=244.6
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCc-----hhhhhhhhHHHHHHHHHHHhHhCCCCCC-c-EEEecChhHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPD-----DFYFNSLRKGILESRAAVKDLINADDVG-E-ISLVDNATTAAA 112 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~~~~~~~~-~-i~~t~g~t~a~~ 112 (452)
.+|++++++.+.|+.|++++.+.+..+.+.+. .++.....+..+++++.+++++|++ ++ + +++|+|||+++.
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFA 82 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCC-CCcEEEEECCCchHHHH
Confidence 46788888889999999999887643322111 1122344567899999999999996 43 5 467799999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH-H-HHHHHHHHhccccCCCc
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE-I-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~-~~~l~~~i~~~~~~~~~ 190 (452)
.++.++ +++||+|++..+.|.+.. +...++..| +++.++++.+ ++.+. + .++++ + +++
T Consensus 83 ~~~~~l--------~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~-~~~~~~~~~~~~~--i------~~~ 142 (362)
T 2c0r_A 83 MIPMNF--------LKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEA-SNYMTLPKLQEIQ--L------QDN 142 (362)
T ss_dssp HHHHHH--------CCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGG-GTTCSCCCGGGCC--C------CTT
T ss_pred HHHHhc--------CCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEecccc-cccccCCCHHHcc--c------CCC
Confidence 999987 478999998877655532 222356668 8988865310 01111 1 22222 4 578
Q ss_pred eEEEEEeccCCCCccc-ccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 191 IRLAIIDHITSMPCVV-IPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~-~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
|++|++++++|+||.. .|+++| +|+ ++++|++|+.|..++++..+ |++++|+||+ +||.|+|+++++++
T Consensus 143 t~~v~~~~~~n~tG~~~~~l~~i------~~~-~vivD~a~~~~~~~~~~~~~--d~~~~s~~K~-~g~~G~G~l~~~~~ 212 (362)
T 2c0r_A 143 AAYLHLTSNETIEGAQFKAFPDT------GSV-PLIGDMSSDILSRPFDLNQF--GLVYAGAQKN-LGPSGVTVVIVRED 212 (362)
T ss_dssp EEEEEEESEETTTTEECSSCCCC------TTS-CEEEECTTTTTSSCCCGGGC--SEEEEETTTT-TCCSSCEEEEEEGG
T ss_pred cCEEEEeCCcCccceeccccccc------CCC-EEEEEChhhccCCccchhHC--cEEEEecccc-ccCcCcEEEEEcHH
Confidence 9999999999999996 677777 899 69999999999888776654 8999999998 57999999999998
Q ss_pred ccccCCCCCceeccCCCC-cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcC
Q 012991 270 ILSSDMHHPVVSHEFGNG-LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLG 347 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~ 347 (452)
+++. +. +.....+... ........++++...++++.++++++.+. ++++.++++.+++++++.+.|.+++++ .+.
T Consensus 213 ~~~~-l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 289 (362)
T 2c0r_A 213 LVAE-SP-KHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEER-GGLEGVQQANRKKASLIYDAIDQSGGFYRGC 289 (362)
T ss_dssp GSSS-CC-TTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHTSTTSSEES
T ss_pred HHhh-cc-ccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 8865 32 1100000000 00011223677777788888888887641 258999999999999999999987435 654
Q ss_pred CCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 348 SPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 348 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
.++. ....+++|.++ .+.+..++.+.|.++ ||.+..+..+ .+++|+|++.+++.
T Consensus 290 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~~~-gi~~~~g~~~------------------~~~iRis~~~~~~~ 344 (362)
T 2c0r_A 290 VDVDSRSDMNITFRLA------SEELEKEFVKASEQE-GFVGLKGHRS------------------VGGLRASIYNAVPY 344 (362)
T ss_dssp SCGGGBCSSEEEEECS------CHHHHHHHHHHHHHT-TEESCBCCTT------------------TCSEEEECCTTSCH
T ss_pred CChHHcCCcEEEEEcC------CcchHHHHHHHHHHC-CCeeccCCCC------------------CCEEEEECCCCCCH
Confidence 3322 23567888876 345678899999764 9987543321 35799999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 012991 427 EDYEKFRDAVILLVE 441 (452)
Q Consensus 427 ~di~~l~~~l~~~~~ 441 (452)
+|+++++++|+++++
T Consensus 345 e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 345 ESCEALVQFMEHFKR 359 (362)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 36
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=1e-30 Score=260.72 Aligned_cols=339 Identities=15% Similarity=0.163 Sum_probs=251.1
Q ss_pred CCeEEeccCCC-C-CCcHHHHHHHHHHHHHHh-cCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 38 HGVARINNGSF-G-SCPKSVLADQQKWQLKFL-QQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 38 ~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
..++.|..+.+ + ..++.+.+++.+.+..+. ..+.+....+..+...++++.+++++|.+ ..+++++|++|+..+
T Consensus 64 ~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~---~~i~~~sGs~a~~~a 140 (427)
T 2w8t_A 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTT---GAIVFSTGYMANLGI 140 (427)
T ss_dssp EEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHH
T ss_pred ceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCC---ceEEecCcHHHHHHH
Confidence 34667777753 5 467789999998887643 12222223344577899999999999984 567778888899998
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
+.++ +++||.|+++.+.|.++..++. ..|.+++.+ +..+ +++|++.+++.. ..++++|
T Consensus 141 l~~l--------~~~gd~vl~~~~~h~~~~~~~~----~~g~~~~~~----~~~d----~~~le~~l~~~~--~~~~~~v 198 (427)
T 2w8t_A 141 ISTL--------AGKGEYVILDADSHASIYDGCQ----QGNAEIVRF----RHNS----VEDLDKRLGRLP--KEPAKLV 198 (427)
T ss_dssp HHHH--------SCTTCEEEEETTCCHHHHHHHH----HSCSEEEEE----CTTC----HHHHHHHHHTSC--SSSCEEE
T ss_pred HHHh--------cCCCCEEEECCcccHHHHHHHH----HcCCeeEEe----CCCC----HHHHHHHHHhcc--CCCCeEE
Confidence 8876 4789999999999999877654 458898888 3322 688888886421 1278999
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---------ccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---------IDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
++++++||+|.+.|+++|.++|++||+ ++|+|++|+.+... +++. .++|+++.|++|+ +|++| |+++
T Consensus 199 ~~~~~~n~tG~~~~l~~l~~l~~~~g~-~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~-~g~~g-G~v~ 274 (427)
T 2w8t_A 199 VLEGVYSMLGDIAPLKEMVAVAKKHGA-MVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKS-VGTVG-GFVV 274 (427)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHTTC-EEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSST-TCSCC-EEEE
T ss_pred EEcCCCCCCCCccCHHHHHHHHHHcCC-EEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhh-hccCC-CEEE
Confidence 999999999999999999999999999 79999999987654 3332 2579999999997 56887 9999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+++++++. +. ... ....+.++.+...+.++.++++.+. ..+.++++++++++++.+.|.++ ++.
T Consensus 275 ~~~~l~~~-l~-~~~---------~~~~~~~~~~~~~~aa~~~al~~~~----~~~~~~~~~~~~~~~l~~~L~~~-g~~ 338 (427)
T 2w8t_A 275 SNHPKFEA-VR-LAC---------RPYIFTASLPPSVVATATTSIRKLM----TAHEKRERLWSNARALHGGLKAM-GFR 338 (427)
T ss_dssp ECCTTGGG-GG-GTC---------HHHHSSCCCCHHHHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHH-TCE
T ss_pred eCHHHHHH-HH-Hhc---------ccccccCCCCHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 99888775 21 110 0011123444444444445666543 24778889999999999999988 777
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+..++ ..++++++.++ +..+..++.+.|.++ ||.+..+..+.. ....+++|++++.++|
T Consensus 339 ~~~~~-~~~~~~~~~~~------~~~~~~~l~~~L~~~-Gi~v~~~~~~~~-------------~~~~~~lRi~~~~~~t 397 (427)
T 2w8t_A 339 LGTET-CDSAIVAVMLE------DQEQAAMMWQALLDG-GLYVNMARPPAT-------------PAGTFLLRCSICAEHT 397 (427)
T ss_dssp ESCSS-CCSSEEEEEES------SHHHHHHHHHHHHHT-TEECEEECTTTS-------------CTTCEEEEEECCTTCC
T ss_pred ccCCC-CCCCEEEEEEC------CHHHHHHHHHHHHHC-CeEEeeeCCCCC-------------CCCCeEEEEEeCCCCC
Confidence 65333 12678888886 345677899999876 999976654321 1224689999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
++|+++++++|++++++
T Consensus 398 ~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 398 PAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999865
No 37
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=3.2e-31 Score=261.67 Aligned_cols=343 Identities=12% Similarity=0.114 Sum_probs=250.2
Q ss_pred CCCeEEeccCCC-C-CCcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSF-G-SCPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
+..++.|..+.+ + +.++.+.+++.+.+..+... +...+.++..+...+++++++++++.+ + .+++++||+|+..
T Consensus 42 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~--~-~i~~~sGt~a~~~ 118 (399)
T 3tqx_A 42 EKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTD--D-TILYSSCFDANGG 118 (399)
T ss_dssp TEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHT
T ss_pred CeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCC--c-EEEECchHHHHHH
Confidence 345677776654 4 35788999999888764211 112223445677899999999999985 4 5555667889999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++ +++|++|+++.+.|++....+ +..|.++..++. .+ ++++++.+++....+.++++
T Consensus 119 ~l~~~--------~~~gd~v~~~~~~~~~~~~~~----~~~g~~~~~~~~----~d----~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 119 LFETL--------LGPEDAIISDELNHASIIDGI----RLCKAQRYRYKN----NA----MGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp THHHH--------CCTTCEEEEETTCCHHHHHHH----HSCCSEEEEECT----TC----TTHHHHHHHHHHTTTCSSEE
T ss_pred HHHHh--------cCCCCEEEECCcccHHHHHHH----HHcCCceeEeCC----CC----HHHHHHHHHhhhccCCCceE
Confidence 88876 589999999999999876654 456999998843 22 45666666543222238999
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc------cccc--cCccEEEEcCcccCcCCCCcEEEE
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI------DVKE--IGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~------~~~~--~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
|++++++||||.+.|+++|.++|++||+ ++|+|++|+.|.... +... .++|+++.|+||+++|++| |+++
T Consensus 179 v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~ 256 (399)
T 3tqx_A 179 IATDGVFSMDGIIADLKSICDLADKYNA-LVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTS 256 (399)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTC-EEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEE
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHcCC-EEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEE
Confidence 9999999999999999999999999999 799999997664322 1111 2579999999998776888 9999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
.++++++. + .... ....+.++.+...+.++.++++...+ +.+.++++++++++++.+.|.++ +++
T Consensus 257 ~~~~~~~~-~-~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-g~~ 321 (399)
T 3tqx_A 257 GHKEIIEW-L-RNRS---------RPYLFSNTVAPVIVATSLKVLELLKT---EGPQLRKQLQENSRYFRAGMEKL-GFQ 321 (399)
T ss_dssp ECHHHHHH-H-HHHC---------HHHHSSCCCCHHHHHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred cCHHHHHH-H-HHhC---------cceeccCCCcHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 98887765 1 1110 00111234555455555566666532 67889999999999999999988 777
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+..+. ++++++.++ ...+..++.+.|.++ ||.+..+..+.. ....+++|++++..++
T Consensus 322 ~~~~~---~~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~~~~~~~-------------~~~~~~iRi~~~~~~~ 378 (399)
T 3tqx_A 322 LVPGN---HPIIPVMLG------DAQLATNMADHLLQE-GIYVVGFSYPVV-------------PMGKARIRVQMSAVHT 378 (399)
T ss_dssp BCCCS---SSEEEEEEE------CHHHHHHHHHHHHHT-TEECCEECTTTS-------------CTTCEEEEEECCTTCC
T ss_pred cCCCC---CCEEEEEeC------CHHHHHHHHHHHHHC-CCEEeeeCCCCC-------------CCCCceEEEEeecCCC
Confidence 66332 668888876 345678899999875 999975433211 1235799999998899
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
++|+++++++|++++++
T Consensus 379 ~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 379 QQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999865
No 38
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=8.2e-31 Score=255.84 Aligned_cols=335 Identities=12% Similarity=0.090 Sum_probs=248.8
Q ss_pred CCCCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCC
Q 012991 20 LTRCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDV 98 (452)
Q Consensus 20 ~~~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 98 (452)
.....+...+++.+.. +.+++|+.+... +.|+.+.+++.+.+.....++. ... .++++++++++|++ +
T Consensus 14 ~~~~~~~~~~~~~~~~--~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-------~~~-~~lr~~la~~~~~~-~ 82 (365)
T 3get_A 14 YEPGKDIEVIAKEYGV--KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPD-------DSM-IELKSTLAQKYKVQ-N 82 (365)
T ss_dssp CCCCCCHHHHHHHTTC--SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCC-------TTC-HHHHHHHHHHHTCC-G
T ss_pred CCCCCCHHHHHHhcCC--CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCC-------CCh-HHHHHHHHHHhCCC-c
Confidence 3445567777777753 679999977554 5778899999887653222221 122 68999999999985 7
Q ss_pred CcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHH
Q 012991 99 GEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l 177 (452)
+++++|+|+|+|+.+++.++ +++||+|+++.++|.+....+ +..|.+++.+++ + ++++ + ++++
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~--~-~~~~-~d~~~l 146 (365)
T 3get_A 83 ENIIIGAGSDQVIEFAIHSK--------LNSKNAFLQAGVTFAMYEIYA----KQCGAKCYKTQS--I-THNL-DEFKKL 146 (365)
T ss_dssp GGEEEESSHHHHHHHHHHHH--------CCTTCEEEECSSCCTHHHHHH----HHHTCEEEECSS--S-SCCH-HHHHHH
T ss_pred ceEEECCCHHHHHHHHHHHH--------hCCCCEEEEeCCChHHHHHHH----HHcCCEEEEEec--C-CCCC-CCHHHH
Confidence 89999999999999999987 588999999999999876655 445999999854 1 3345 6 9999
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHH--HcCCCEEEEecccccCC------ccccc----cccCcc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR--DEGVDQVFVDAAHAMGS------IKIDV----KEIGAD 245 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~--~~~~~~~ivD~a~~~g~------~~~~~----~~~~~d 245 (452)
++++ .+++++|++++++||||.++|.+++.++++ ++|+ ++|+|++|+.+. .+.+. ...+.+
T Consensus 147 ~~~l------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (365)
T 3get_A 147 YETH------KDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDC-LVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV 219 (365)
T ss_dssp HHHT------TTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTS-EEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTE
T ss_pred HHHh------CCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCc-EEEEeCccHHHhcccCCcccccHhHHhccCCCE
Confidence 9999 578999999999999999999999988888 6799 899999987332 22221 123567
Q ss_pred EEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 246 FYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
+++.|+||+ +|++| +|++++++++++. + .... ...+++...+.++.++++.. ..++..
T Consensus 220 i~~~s~sK~-~~~~G~r~G~~~~~~~~~~~-~-~~~~-------------~~~~~~~~~~~~~~~~l~~~----~~~~~~ 279 (365)
T 3get_A 220 LYLGTFSKL-YGLGGLRIGYGIANANIISA-F-YKLR-------------APFNVSNLALKAAVAAMDDD----EFTEKT 279 (365)
T ss_dssp EEEEESSST-TSCTTTCCEEEEECHHHHHH-H-HHHS-------------CTTCSCHHHHHHHHHHHTCH----HHHHHH
T ss_pred EEEeecchH-hcCcchheEEEEcCHHHHHH-H-HHhc-------------CCCCcCHHHHHHHHHHhCCH----HHHHHH
Confidence 889999997 45444 7999998777664 1 1110 00224444444445555432 247788
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
+++++++++++.+.|.++ ++++..+. ++++++.++ .. +..++.+.|.++ ||.+..+..+
T Consensus 280 ~~~~~~~~~~l~~~l~~~-g~~~~~~~---~~~~~~~~~------~~-~~~~~~~~l~~~-gi~v~~g~~~--------- 338 (365)
T 3get_A 280 LENNFSQMELYKEFAKKH-NIKIIDSY---TNFITYFFD------EK-NSTDLSEKLLKK-GIIIRNLKSY--------- 338 (365)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCEECCCS---SSEEEEECS------SS-CHHHHHHHHHTT-TEECEECGGG---------
T ss_pred HHHHHHHHHHHHHHHHhC-CCEECCCC---CeEEEEECC------CC-CHHHHHHHHHHC-CEEEEECccC---------
Confidence 889999999999999988 77765433 567888886 22 677899999775 9999776554
Q ss_pred CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 404 GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+ ++++|++++ +.+|+++++++|++++
T Consensus 339 ------~--~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 339 ------G--LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ------T--CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred ------C--CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 1 579999987 8999999999999876
No 39
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-32 Score=274.20 Aligned_cols=375 Identities=15% Similarity=0.087 Sum_probs=265.3
Q ss_pred CCCCCCHHHHHhhhccC-C--CCeEEeccCCCC---CCcHHHHHHHHHHHHHHhc-CCchh-hhhhhhHHHHHHHHHHHh
Q 012991 20 LTRCISEAEIRDEFSHH-Q--HGVARINNGSFG---SCPKSVLADQQKWQLKFLQ-QPDDF-YFNSLRKGILESRAAVKD 91 (452)
Q Consensus 20 ~~~~~~~~~ir~~~~~~-~--~~~~~l~~~~~~---~~p~~v~e~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~la~ 91 (452)
|...++.+++.+++... . ....+.+....+ ..++.+.+.+.+.+..... ++... ......++.+++++++++
T Consensus 39 p~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~ 118 (497)
T 3mc6_A 39 PSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLR 118 (497)
T ss_dssp CSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHH
Confidence 34567777776665321 1 234444443333 2345677888777665322 12111 113445677889999999
Q ss_pred HhCCC-CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCC-
Q 012991 92 LINAD-DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLAS- 169 (452)
Q Consensus 92 ~~~~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~- 169 (452)
++|++ +.+++++|+|||+|+.+++.++.....+..-.++++|+++.+.|.++..++ ...|.+++.+++ ++
T Consensus 119 ~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~----~~~G~~~~~v~~----~~~ 190 (497)
T 3mc6_A 119 MFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAA----YYFGMKLRHVEL----DPT 190 (497)
T ss_dssp HTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHH----HHSCCEEEEECB----CTT
T ss_pred HhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHH----HHcCCeEEEEec----Ccc
Confidence 99986 467999999999999999998742110000012379999999999976665 446999999954 33
Q ss_pred hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc------------c
Q 012991 170 EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI------------K 236 (452)
Q Consensus 170 ~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~------------~ 236 (452)
++.+ +++|++++ .+++++|++++++|++|.+.|+++|+++|++||+ ++|+|++|+.+.. +
T Consensus 191 ~~~~d~~~l~~~i------~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~-~livD~a~~~~~~~f~~~~~~~~~~~ 263 (497)
T 3mc6_A 191 TYQVDLGKVKKFI------NKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKL-PLHVDSCLGSFIVSFMEKAGYKNLPL 263 (497)
T ss_dssp TCSBCTTTTGGGC------CSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTC-CEEEETTTTHHHHGGGTTTTCCSCCC
T ss_pred cCcCCHHHHHHHH------hhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCC-EEEEECcchhhhhhhhhhhcccCCcc
Confidence 3444 78899888 5689999999999999999999999999999999 6999999874322 3
Q ss_pred ccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHh
Q 012991 237 IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF 316 (452)
Q Consensus 237 ~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 316 (452)
++....++|++++|+||+++++.|+|+++++++.+.. . .......+..+........++.+....+++.++++.+...
T Consensus 264 ~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~ 341 (497)
T 3mc6_A 264 LDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRM-H-QYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGEN 341 (497)
T ss_dssp CSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHT-T-TSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHh-h-hhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHH
Confidence 5555668999999999998899999999998766554 1 1111111111110111122444444466777888877754
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCC
Q 012991 317 EGGIDGIMQRNHEQALKMARMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAP 395 (452)
Q Consensus 317 ~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~ 395 (452)
|++++.++..++++++.+.|.+ ++++++..++. .++++|..+ +.+..++.+.|.++ ||.++....
T Consensus 342 --~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~--~~~v~~~~~-------~~~~~~l~~~L~~~-Gi~v~~~~~-- 407 (497)
T 3mc6_A 342 --GYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPR--YSVISFSSK-------TLNIHELSDRLSKK-GWHFNALQK-- 407 (497)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCC--SSEEEEECT-------TTTHHHHHHHHHTT-TCBCEECCS--
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC--eeEEEEeCC-------CCCHHHHHHHHHhC-CEEEecCCC--
Confidence 7888999999999999999999 68888776543 667777764 45778999999775 998764322
Q ss_pred CCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 396 KDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
+..+|+++. .+|.+|+++++++|++++++.
T Consensus 408 -----------------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~ 437 (497)
T 3mc6_A 408 -----------------PVALHMAFT-RLSAHVVDEICDILRTTVQEL 437 (497)
T ss_dssp -----------------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHH
T ss_pred -----------------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHH
Confidence 347899998 679999999999999998653
No 40
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=3.8e-31 Score=258.02 Aligned_cols=335 Identities=14% Similarity=0.078 Sum_probs=243.9
Q ss_pred CCCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCC
Q 012991 21 TRCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVG 99 (452)
Q Consensus 21 ~~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 99 (452)
....+...+++.+. .+.+++|+.+... +.|+.+.+++.+.+... ..+ +.....+++++++++++++ ++
T Consensus 17 ~~~~~~~~~~~~~~--~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-----~~y---~~~~~~~lr~~la~~~~~~-~~ 85 (363)
T 3ffh_A 17 KPGKREEEVMAELG--LTKITKLSSNENPLGTSKKVAAIQANSSVET-----EIY---PDGWASSLRKEVADFYQLE-EE 85 (363)
T ss_dssp ---CHHHHHHHTTT--CSCCEECSSCSCTTCCCHHHHHHHHTCBSCC-----CBC-------CHHHHHHHHHHHTCC-GG
T ss_pred CCCCCHHHHHHhcC--CCceEEccCCCCCCCCCHHHHHHHHHHHHHh-----hcC---CCcchHHHHHHHHHHhCCC-hh
Confidence 34455666777775 3678999988555 56777888887754221 111 2345689999999999985 78
Q ss_pred cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHH
Q 012991 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFK 178 (452)
Q Consensus 100 ~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~ 178 (452)
++++|+|+|+++.+++.++ +++|++|+++.++|++....+ +..|.+++.++.+ .++.+ +++++
T Consensus 86 ~v~~~~g~t~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~~----~~~~~d~~~l~ 149 (363)
T 3ffh_A 86 ELIFTAGVDELIELLTRVL--------LDTTTNTVMATPTFVQYRQNA----LIEGAEVREIPLL----QDGEHDLEGML 149 (363)
T ss_dssp GEEEESSHHHHHHHHHHHH--------CSTTCEEEEEESSCHHHHHHH----HHHTCEEEEEECC----TTSCCCHHHHH
T ss_pred hEEEeCCHHHHHHHHHHHH--------ccCCCEEEEcCCChHHHHHHH----HHcCCEEEEecCC----CCCCcCHHHHH
Confidence 9999999999999999987 478999999999999866554 4459999999653 22334 89999
Q ss_pred HHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc--CCCEEEEecccccCCc-----cccc-cccCccEEEEc
Q 012991 179 KGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE--GVDQVFVDAAHAMGSI-----KIDV-KEIGADFYVSN 250 (452)
Q Consensus 179 ~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~--~~~~~ivD~a~~~g~~-----~~~~-~~~~~d~~~~s 250 (452)
+++ ++++++|++++++||||.++|.+++.++++.+ |+ ++|+|++|+.... .... ...+.++++.|
T Consensus 150 ~~i------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s 222 (363)
T 3ffh_A 150 NAI------DEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDV-LVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRT 222 (363)
T ss_dssp HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTS-EEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEE
T ss_pred Hhc------ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCc-EEEEeCchHhhcCccccCHHHHhhcCCCEEEEee
Confidence 999 57899999999999999999999999999887 99 8999999984321 1111 11234578889
Q ss_pred CcccCcCCCCc--EEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 251 LHKWFFCPPSV--AFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 251 ~~K~l~g~~G~--G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
++|+ +|++|. |++++++++++. + .... ...+.+...+.++.++++.. +.++..+++.+
T Consensus 223 ~sK~-~g~~G~r~G~~~~~~~~~~~-l-~~~~-------------~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~ 282 (363)
T 3ffh_A 223 FSKI-YGLASARVGYGIADKEIIRQ-L-NIVR-------------PPFNTTSIGQKLAIEAIKDQ----AFIGECRTSNA 282 (363)
T ss_dssp SSST-TCCSSCCCEEEEECHHHHHH-H-HHTC-------------CSCCCBHHHHHHHHHHHHCH----HHHHHHHHHHH
T ss_pred chhh-hcCchhceeeeecCHHHHHH-H-HHhC-------------CCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHH
Confidence 9996 566664 999998877765 1 1110 01233444444444444422 24677888899
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
++++++.+.|.+.+++.+..+. ++++++.++ . +..++.+.|.+ +||.+..+..+
T Consensus 283 ~~~~~l~~~l~~~~g~~~~~~~---~~~~~~~~~-------~-~~~~~~~~l~~-~gi~v~~g~~~-------------- 336 (363)
T 3ffh_A 283 NGIKQYEAFAKRFEKVKLYPAN---GNFVLIDLG-------I-EAGTIFSYLEK-NGYITRSGAAL-------------- 336 (363)
T ss_dssp HHHHHHHHHHHHCTTCEECCCC---SSEEEEECS-------S-CHHHHHHHHHH-TTEECEETTTT--------------
T ss_pred HHHHHHHHHHhhCCCceECCCC---CeEEEEECC-------C-CHHHHHHHHHH-CCeEEEeCccC--------------
Confidence 9999999999986687765432 567888886 2 66789999976 49999876554
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..++++|++++ +++|+++++++|++++
T Consensus 337 --~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 337 --GFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp --TCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred --CCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 22579999987 8999999999998763
No 41
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.4e-31 Score=262.67 Aligned_cols=324 Identities=12% Similarity=0.156 Sum_probs=238.7
Q ss_pred hhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 75 FNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 75 ~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
...+.+.++++++.+++++|++ +.++||+|||+|+++++..+ .+||+|++.+++|++. .+..++...
T Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~sgt~a~~~~~~~~---------~~gd~vi~~~~~~~~~--~~~~~~~~~ 96 (379)
T 3ke3_A 30 SKAFQEVMNDLLSNLKTVYNAE--AAVIIPGSGTYGMEAVARQL---------TIDEDCLIIRNGWFSY--RWTQILEKG 96 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHHH---------CTTCEEEEEECSHHHH--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCC--CEEEEcCChhHHHHHHHHhC---------CCCCeEEEEeCCchhH--HHHHHHHHh
Confidence 3445677899999999999996 78899999999999987644 6899999999999875 333335555
Q ss_pred C--cEEEEEeCCCCC-----CChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCE
Q 012991 155 G--GSVVEVQLPFPL-----ASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQ 223 (452)
Q Consensus 155 g--~~v~~~~~~~~~-----~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~ 223 (452)
| .+++.++.+... ...+.+ ++++++++++ +++++|++++++|++|.+.| +++|.++|++||+ +
T Consensus 97 g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~-----~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~-~ 170 (379)
T 3ke3_A 97 KFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKE-----DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGG-L 170 (379)
T ss_dssp CCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHH-----HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTC-E
T ss_pred CCCCceEEEeccccccccccCCCCCCCHHHHHHHHhh-----cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCC-E
Confidence 5 477887652100 001123 7899998852 46889999999999999999 9999999999999 8
Q ss_pred EEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCce-eccCCCC--------c-ccccc
Q 012991 224 VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVV-SHEFGNG--------L-PIESA 293 (452)
Q Consensus 224 ~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~-~~~~~~~--------~-~~~~~ 293 (452)
+|+|++++ |..++++..+++|++++|+|||++||.|+|++++++++++. +..... ...+... . .....
T Consensus 171 li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 248 (379)
T 3ke3_A 171 LVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKK-VESTESNCFSLDLKQWLTIMRAYENGGHA 248 (379)
T ss_dssp EEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHH-HHTCCCSCSTTCHHHHHHHHHHHHTTSCC
T ss_pred EEEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHh-hhcCCCCceeecHHHHHHHHHhhhccCCC
Confidence 99999999 88888888889999999999999999999999999887654 211000 0000000 0 00011
Q ss_pred cccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccc-eEEEEcCCccccCChhh
Q 012991 294 WIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAA-MVMVGLPSRLRVMGEDD 372 (452)
Q Consensus 294 ~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 372 (452)
+.++++...++++.++++++.+. |++.+.++.+++++++++.|.++ |+++..++...++ +..+..+ +.+
T Consensus 249 ~~~t~~~~~~~a~~aal~~~~~~--g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~-------~~~ 318 (379)
T 3ke3_A 249 YHATMPTDSLRQFRDAILEAKEI--GFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTE-------RDD 318 (379)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECS-------CHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccC-------Ccc
Confidence 23588888888999999988865 89999999999999999999987 8877655443344 4444443 212
Q ss_pred HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 373 ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 373 ~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
. .+.+.|.+ +||.+..+..+.... ...++.+|+|++.++|++||++++++|++++++
T Consensus 319 ~-~~~~~L~~-~Gi~v~~g~~~~~~~-----------~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 319 M-HKGSAFAE-AGLQIAAGVPLKVGE-----------PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp H-HSSHHHHH-TTCCCEECCCCSSCC-----------CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHH-CCeEEeCCccccccc-----------cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence 2 23566755 599987654431100 123579999999999999999999999998864
No 42
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=1.1e-30 Score=258.04 Aligned_cols=340 Identities=13% Similarity=0.159 Sum_probs=249.7
Q ss_pred CCCCeEEeccCCC-CC-CcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 36 HQHGVARINNGSF-GS-CPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 36 ~~~~~~~l~~~~~-~~-~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
.+..++.|+.+.+ +. .|+.+.+++.+.+...... .......+..+..+++++.+++++|. +++++|+|||+|+.
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~---~~v~~~~ggt~a~~ 117 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK---EAAILFSTGFQSNL 117 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHH
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC---CcEEEECCHHHHHH
Confidence 3456788888765 53 7788999998887654211 11112234467789999999999997 48999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceE
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 192 (452)
+++.++ +++||+|+++.+.|.++...+ ...|.+++.++. .+ +++|++.+++.. .++++
T Consensus 118 ~~~~~~--------~~~gd~V~~~~p~~~~~~~~~----~~~g~~~~~v~~----~d----~~~l~~~l~~~~--~~~~~ 175 (398)
T 3a2b_A 118 GPLSCL--------MGRNDYILLDERDHASIIDGS----RLSFSKVIKYGH----NN----MEDLRAKLSRLP--EDSAK 175 (398)
T ss_dssp HHHHHS--------SCTTCEEEEETTCCHHHHHHH----HHSSSEEEEECT----TC----HHHHHHHHHTSC--SSSCE
T ss_pred HHHHHH--------hCCCCEEEECCccCHHHHHHH----HHcCCceEEeCC----CC----HHHHHHHHHhhc--cCCce
Confidence 999976 588999999999999886665 446999998843 22 688888886421 02789
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc---cccccc-c----CccEEEEcCcccCcCCCCcEEE
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKE-I----GADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~-~----~~d~~~~s~~K~l~g~~G~G~l 264 (452)
+|++++++||||.+.|+++|.++|++||+ ++|+|++++.+.. ..++.. . ++|+++.|+||+ +++.| |++
T Consensus 176 ~v~~~~~~nptG~~~~~~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~-~~~~G-G~~ 252 (398)
T 3a2b_A 176 LICTDGIFSMEGDIVNLPELTSIANEFDA-AVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKS-LASLG-GFV 252 (398)
T ss_dssp EEEEESBCTTTCCBCCHHHHHHHHHHHTC-EEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSST-TCSSC-EEE
T ss_pred EEEEeCCCCCCCCccCHHHHHHHHHHcCc-EEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccc-ccCCC-cEE
Confidence 99999999999999999999999999999 7999999987643 122111 1 369999999997 66888 999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. + ..... .....++++.....++.++++.... .+.++++++++++++.+.|.++ ++
T Consensus 253 ~~~~~~~~~-l-~~~~~---------~~~~~~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-g~ 316 (398)
T 3a2b_A 253 AGDADVIDF-L-KHNAR---------SVMFSASMTPASVASTLKALEIIQN----EPEHIEKLWKNTDYAKAQLLDH-GF 316 (398)
T ss_dssp EECHHHHHH-H-HHHCH---------HHHSSBCCCHHHHHHHHHHHHHHHH----CTHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EeCHHHHHH-H-HHhcc---------cceecCCCCHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 998877664 1 11000 0011123333332234455655432 4567888999999999999987 77
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
++..+. ++++++.++ ++.+..++.+.|.++ ||.+..+..+.. ....+++|++++.++
T Consensus 317 ~~~~~~---g~~~~~~~~------~~~~~~~l~~~l~~~-gi~v~~~~~~~~-------------~~~~~~iRis~~~~~ 373 (398)
T 3a2b_A 317 DLGATE---SPILPIFIR------SNEKTFWVTKMLQDD-GVFVNPVVSPAV-------------PAEESLIRFSLMATH 373 (398)
T ss_dssp CBCSCC---SSEEEEECC------CHHHHHHHHHHHHHT-TEECEEECTTTS-------------CGGGCEEEEECCTTC
T ss_pred CcCCCC---CCEEEEEcC------CHHHHHHHHHHHHHC-CcEEEeeCCCCC-------------CCCCceEEEEEeCCC
Confidence 765432 678888886 355778899999876 999977654421 123579999999888
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
+++|+++++++|++++++
T Consensus 374 ~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 374 TYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
No 43
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=1.5e-30 Score=257.37 Aligned_cols=341 Identities=13% Similarity=0.110 Sum_probs=246.9
Q ss_pred CCCeEEeccCCCC-C-CcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSFG-S-CPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~-~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
+..++.|+.+.+- + .|+.+.+++.+.+..+... ....+.+...+...++++++++++|++ + .+++++||+++..
T Consensus 44 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--~-~i~~~sGs~a~~~ 120 (401)
T 1fc4_A 44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME--D-AILYSSCFDANGG 120 (401)
T ss_dssp SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS--E-EEEESCHHHHHHT
T ss_pred CccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC--c-EEEeCChHHHHHH
Confidence 4567777666432 2 4788999999887653211 111233333677899999999999985 4 4566777889999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++ .++||+|+++.+.|.+.... +...|.+++.++ ..+ .+++++.+++......++++
T Consensus 121 ~~~~~--------~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~----~~d----~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 121 LFETL--------LGAEDAIISDALNHASIIDG----VRLCKAKRYRYA----NND----MQELEARLKEAREAGARHVL 180 (401)
T ss_dssp THHHH--------CCTTCEEEEETTCCHHHHHH----HHTSCSEEEEEC----TTC----HHHHHHHHHHHHHTTCSSEE
T ss_pred HHHHH--------cCCCCEEEEcchhHHHHHHH----HHHcCCceEEEC----CCC----HHHHHHHHHHhhccCCCceE
Confidence 88876 47899999999999887654 355799998884 222 57777777532111127899
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-c--------ccccccCccEEEEcCcccCcCCCCcEEE
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-K--------IDVKEIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~--------~~~~~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
|++++++||||.+.|+++|.++|+++|+ ++|+|++++.+.. + .++.. +.|+++.|+||+++|+.| |++
T Consensus 181 v~~~~~~nptG~~~~~~~i~~l~~~~~~-~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~ 257 (401)
T 1fc4_A 181 IATDGVFSMDGVIANLKGVCDLADKYDA-LVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYT 257 (401)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTE-EEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEE
T ss_pred EEEeCCcCCCCCCCCHHHHHHHHHHcCC-EEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEE
Confidence 9999999999999999999999999999 8999999975553 2 23322 579999999998757777 999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. + .... ....+.++.+...+.++.++++.+.. .+.++++++++++++.+.|.++ ++
T Consensus 258 ~~~~~~~~~-l-~~~~---------~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-g~ 321 (401)
T 1fc4_A 258 AARKEVVEW-L-RQRS---------RPYLFSNSLAPAIVAASIKVLEMVEA----GSELRDRLWANARQFREQMSAA-GF 321 (401)
T ss_dssp EECHHHHHH-H-HHHC---------HHHHHSCCCCHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EcCHHHHHH-H-HHhC---------cCceeCCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 998877764 1 1110 00111234555555555666666542 3677888999999999999987 77
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
++. +. .++++++.++ +..+..++.+.|.++ ||.+..+..+.. ....+++|++++.++
T Consensus 322 ~~~-~~--~~~~~~~~~~------~~~~~~~l~~~l~~~-gi~v~~~~~~~~-------------~~~~~~iRi~~~~~~ 378 (401)
T 1fc4_A 322 TLA-GA--DHAIIPVMLG------DAVVAQKFARELQKE-GIYVTGFFYPVV-------------PKGQARIRTQMSAAH 378 (401)
T ss_dssp CBC-CS--SSSEEEEEEE------CHHHHHHHHHHHHHT-TEECCEECTTSS-------------CTTCEEEEEECCTTC
T ss_pred ccc-CC--CCCEEEEEcC------ChHHHHHHHHHHHHC-CcEEeeecCCCC-------------CCCCceEEEEeCCCC
Confidence 765 32 3778888876 345677899999775 999976654321 122468999999888
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
+++|+++++++|++++++
T Consensus 379 ~~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 379 TPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
No 44
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=8.9e-31 Score=267.33 Aligned_cols=341 Identities=13% Similarity=0.100 Sum_probs=247.4
Q ss_pred HHHHHHHHHHHHHHh-cCCchhh-hhhhhHHHHHHHHHHHhHhCCC-CCCcE--EEecChhHHHHHHHHHhhcccccCCC
Q 012991 53 KSVLADQQKWQLKFL-QQPDDFY-FNSLRKGILESRAAVKDLINAD-DVGEI--SLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 53 ~~v~e~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~la~~~~~~-~~~~i--~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
..+.+.+.+.+.... .++.... .....+..+++++++++++|.+ +++++ ++|+|||+|+.+++.++...-.+..-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g 189 (514)
T 3mad_A 110 EHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKG 189 (514)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcC
Confidence 345556655554332 2222211 1334566778889999999985 11567 99999999999999987421100000
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
.++|+|+++.+.|.++..++.. .|.+++.+++ +.++.+ +++|++++ .+++++|++++++||+|.+
T Consensus 190 ~~~d~Vi~~~~~~~~~~~~~~~----~G~~v~~v~~----~~~~~~d~~~Le~~i------~~~~~~v~~~~~~nptG~~ 255 (514)
T 3mad_A 190 ITAPEAVVPVSAHAAFDKAAQY----FGIKLVRTPL----DADYRADVAAMREAI------TPNTVVVAGSAPGYPHGVV 255 (514)
T ss_dssp CSSCEEEEETTSCTHHHHHHHH----HTCEEEEECB----CTTSCBCHHHHHHHC------CTTEEEEEEETTCTTTCCC
T ss_pred CCCCeEEEeCccchHHHHHHHH----cCCeeEEeee----CCCCCCCHHHHHHHh------ccCCEEEEEeCCCCCCccc
Confidence 1238999999999997766544 5999999954 444444 89999999 5789999999999999999
Q ss_pred ccHHHHHHHHHHcCCCEEEEecccccCCc-----------cccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCC
Q 012991 207 IPVRKLVKICRDEGVDQVFVDAAHAMGSI-----------KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDM 275 (452)
Q Consensus 207 ~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----------~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l 275 (452)
.|+++|.++|++||+ ++|+|++|+.+.. +++....++|++++|+||+++++.|+|+++++++....
T Consensus 256 ~~l~~i~~la~~~~i-~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~-- 332 (514)
T 3mad_A 256 DPIPEIAALAAEHGI-GCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLH-- 332 (514)
T ss_dssp CCHHHHHHHHHHHTC-EEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHT--
T ss_pred cCHHHHHHHHHHhCC-eEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhc--
Confidence 999999999999999 7999999875533 35555668999999999998899999999998776654
Q ss_pred CCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccc
Q 012991 276 HHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAA 355 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 355 (452)
........+..+........++++....+++.++++.+... +++++.++..++++++.+.|.+++++++..++ .+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~~ 407 (514)
T 3mad_A 333 YQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE--GYLDATRRILQAADRLKAGVRAIPSLKILGDP---LW 407 (514)
T ss_dssp TTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC---SS
T ss_pred cccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC---eE
Confidence 12222212222111222334666666677788888877754 78899999999999999999998788876655 34
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHH
Q 012991 356 MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRD 434 (452)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~ 434 (452)
+++|..+ +.+..++.+.|.++ ||.++ +..+ ++.+|+++... +++++++++++
T Consensus 408 ~~~~~~~-------~~~~~~l~~~L~~~-Gi~v~-g~~~------------------~~~~Ri~~~~~~~~~e~i~~~l~ 460 (514)
T 3mad_A 408 VIAVASD-------ELNIYQVMEEMAGR-GWRLN-GLHR------------------PPAFHVALTLRHTEPGVVDRFLA 460 (514)
T ss_dssp EEEEECS-------SSCHHHHHHHHHTT-TCBCE-EETT------------------TTEEEEECCGGGGSTTHHHHHHH
T ss_pred EEEEeCC-------CCCHHHHHHHHHhc-CCEec-cCCC------------------CCeEEEEEecCCCCHHHHHHHHH
Confidence 7777653 45678899999775 99883 2221 36899999744 45699999999
Q ss_pred HHHHHHhc
Q 012991 435 AVILLVEE 442 (452)
Q Consensus 435 ~l~~~~~~ 442 (452)
+|++++++
T Consensus 461 ~L~~~l~~ 468 (514)
T 3mad_A 461 DLQDAVAQ 468 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 45
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=3.5e-32 Score=273.34 Aligned_cols=361 Identities=9% Similarity=0.009 Sum_probs=248.1
Q ss_pred CHHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch------------hhhhhhhHHHHHHHHHHHhH
Q 012991 25 SEAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD------------FYFNSLRKGILESRAAVKDL 92 (452)
Q Consensus 25 ~~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~la~~ 92 (452)
++..++++|+.. ...+|||++++++.|+.|.+++.........++.. .......+..++++++++++
T Consensus 67 ~i~~~~~~~~~~-~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 145 (456)
T 2z67_A 67 KIKLFLKFLSMM-DTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQ 145 (456)
T ss_dssp HHHHHHHHHHTT-BGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHH
Confidence 356778889865 45689999999999998999887643110111111 11123566788999999999
Q ss_pred hCCCCCCcEEEecChh-HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChH
Q 012991 93 INADDVGEISLVDNAT-TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEE 171 (452)
Q Consensus 93 ~~~~~~~~i~~t~g~t-~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~ 171 (452)
+|++ ++ +++|+||| .++.+++.++. . ..+++.|++++++|++....+ +..|++++.++.. +.++++
T Consensus 146 ~g~~-~~-~~~t~g~te~a~~~al~~~~-~-----~~~~~~vi~~~~~h~s~~~~~----~~~G~~~~~v~~~-~~~~~~ 212 (456)
T 2z67_A 146 LGLN-VH-AIATPISTGMSISLCLSAAR-K-----KYGSNVVIYPYASHKSPIKAV----SFVGMNMRLVETV-LDGDRV 212 (456)
T ss_dssp TTCC-CE-EEEESSCHHHHHHHHHHHHH-H-----HHCCCEEEEECCCCHHHHHHH----HHTTCEEEEECCE-EETTEE
T ss_pred cCCC-CC-EEEeCcHHHHHHHHHHHHHH-H-----hcCCCEEEEECCCcHHHHHHH----HHcCCCceEEEEe-ccCCCC
Confidence 9996 45 99999999 56665666542 1 125678999999999965554 4569999998531 113444
Q ss_pred HH-HHHHHHHH-hccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC---Ccccccccc--Cc
Q 012991 172 EI-INEFKKGI-EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG---SIKIDVKEI--GA 244 (452)
Q Consensus 172 ~~-~~~l~~~i-~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g---~~~~~~~~~--~~ 244 (452)
.+ +++|++++ +... ..++.+|+.++++|++|.+.|+++|+++|+++|+ ++|+|+|++.. ..+.+...+ ++
T Consensus 213 ~~d~~~l~~~i~~~~~--~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~-~v~vD~A~~~~~~g~~~~~~~~~~~~~ 289 (456)
T 2z67_A 213 YVPVEDIENAIKKEIE--LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDI-PHIINGAYAIQNNYYLEKLKKAFKYRV 289 (456)
T ss_dssp ECCHHHHHHHHHHHHH--TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTC-CEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred CcCHHHHHHHHHHHhh--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-cEEEECcchHHHHHhhHHHHHhhCCCC
Confidence 55 89999988 3110 1368889899999999999999999999999999 69999877643 334444333 79
Q ss_pred cEEEEcCcccCcCCCCcEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 245 DFYVSNLHKWFFCPPSVAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 245 d~~~~s~~K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
|++++|+|||+++|.|+|+++++ ++++.. +...+ . |..+....+++.+++..+... |++++
T Consensus 290 D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~-l~~~~----~-----------g~~~~~~~~~~~aal~~l~~~--~~~~~ 351 (456)
T 2z67_A 290 DAVVSSSDKNLLTPIGGGLVYSTDAEFIKE-ISLSY----P-----------GRASATPVVNTLVSLLSMGSK--NYLEL 351 (456)
T ss_dssp SEEEEEHHHHHCCCSSCEEEEESCHHHHHH-HHTTS----C-----------SCBCSHHHHHHHHHHHHHHHH--HHHHH
T ss_pred CEEEEcCCCCcCCCCCeEEEEEcCHHHHhh-cCcCC----C-----------CCCCCCHHHHHHHHHHHHHHH--HHHHH
Confidence 99999999998899999999995 455553 21111 1 111122244556666666543 78899
Q ss_pred HHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEc--CCccccCChhhHHHHHHHHhhhcceE-eeecccCCC-
Q 012991 324 MQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGL--PSRLRVMGEDDALRLRGHLRVRFGVE-VPIHYQAPK- 396 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~gI~-v~~~~~~~~- 396 (452)
.++..++++++.+.|.+++ |+.+..++ ++++|.+ + +. ..++.+.|.++ ||. ++.......
T Consensus 352 ~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~----~~v~~~~~~~-------~~-~~~l~~~L~~~-gi~~~rv~~~~g~f 418 (456)
T 2z67_A 352 VKNQKNSKKLLDELLNDLSKKTGGKFLDVE----SPIASCISVN-------SD-PVEIAAKLYNL-RVTGPRGIKKTDHF 418 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCBCCCC----CSSEEEEECS-------SC-HHHHHHHHHHT-TEESCEEECTTCHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCCEecCCC----CeEEEEEecc-------cH-HHHHHHHHHHc-CCCcceEEeecCcc
Confidence 9999999999999999986 77666554 4566665 3 11 45788888765 763 222100000
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
.|.+|. ....+++|+|++.++|++||++++++|++++
T Consensus 419 ~G~~~~-------~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 419 GNCYLG-------TYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHTCSS-------CCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cccccc-------ccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 000111 1123699999999999999999999998754
No 46
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=3.4e-31 Score=264.21 Aligned_cols=360 Identities=13% Similarity=0.068 Sum_probs=245.6
Q ss_pred HHHHHhhhcc------CCCCeEEeccCCCC-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC
Q 012991 26 EAEIRDEFSH------HQHGVARINNGSFG-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN 94 (452)
Q Consensus 26 ~~~ir~~~~~------~~~~~~~l~~~~~~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 94 (452)
.+.||+.+.. .++.+++|+.|.+. +.|+.+.+++.+.+.... ...|.......+++++++++++
T Consensus 36 ~~~i~~~~~~~~~~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~-----~~~y~~~~g~~~lr~~la~~~~ 110 (427)
T 3dyd_A 36 FNPIRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGK-----YNGYAPSIGFLSSREEIASYYH 110 (427)
T ss_dssp -----------CCCCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCC-----SSSCCCTTCCHHHHHHHHHHHC
T ss_pred cchHHHHHHHHhhcccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCc-----CCCCCCCCCcHHHHHHHHHHHh
Confidence 4557776542 24568999988864 677889999998876421 1123334557889999999998
Q ss_pred -----CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCC
Q 012991 95 -----ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLAS 169 (452)
Q Consensus 95 -----~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~ 169 (452)
++ +++|++|+|||+|+.+++.++ .++|++|++++|+|++....+ ...|.+++.++... +.
T Consensus 111 ~~~~~~~-~~~v~~t~g~t~al~~~~~~l--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~--~~ 175 (427)
T 3dyd_A 111 CPEAPLE-AKDVILTSGCSQAIDLCLAVL--------ANPGQNILVPRPGFSLYKTLA----ESMGIEVKLYNLLP--EK 175 (427)
T ss_dssp BTTBCCC-GGGEEEESSHHHHHHHHHHHH--------CCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEEEEG--GG
T ss_pred hcCCCCC-hHHEEEecCcHHHHHHHHHHh--------cCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeccc--cc
Confidence 54 689999999999999999987 478999999999998865544 55699999986521 11
Q ss_pred hHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC----ccccccc
Q 012991 170 EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS----IKIDVKE 241 (452)
Q Consensus 170 ~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~ 241 (452)
...+ ++.+++.+ .+++++|++++++||||.++| +++|+++|+++|+ ++|+|++|+... ....+..
T Consensus 176 ~~~~d~~~l~~~l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~~i~Deay~~~~~~g~~~~~~~~ 248 (427)
T 3dyd_A 176 SWEIDLKQLEYLI------DEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCV-PILADEIYGDMVFSDCKYEPLAT 248 (427)
T ss_dssp TTEECHHHHHSSC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-CEEEECTTTTCBCSSCCCCCGGG
T ss_pred CCCCCHHHHHHHh------ccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEcCchhhccCCCcCccHHH
Confidence 2223 88999888 567999999999999999999 8899999999999 799999987532 2223333
Q ss_pred cCcc---EEEEcCcccCcCCCC--cEEEEEecCcccc--CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH
Q 012991 242 IGAD---FYVSNLHKWFFCPPS--VAFLYCRKSILSS--DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS 314 (452)
Q Consensus 242 ~~~d---~~~~s~~K~l~g~~G--~G~l~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 314 (452)
++.+ +++.|++|. ++++| +|+++++++.... .+...... .. ....+++...+.++.++++...
T Consensus 249 ~~~~~~vi~~~S~sK~-~~~~G~riG~~~~~~~~~~~~~~i~~~l~~--------~~-~~~~~~~~~~~~a~~~~L~~~~ 318 (427)
T 3dyd_A 249 LSTDVPILSCGGLAKR-WLVPGWRLGWILIHDRRDIFGNEIRDGLVK--------LS-QRILGPCTIVQGALKSILCRTP 318 (427)
T ss_dssp GCSSCCEEEEEESTTT-SSCGGGCCEEEEEECSTTSSHHHHHHHHHH--------HH-HHHCCSCHHHHHHHHHHHHHSC
T ss_pred hCCCCcEEEEeecccc-CCCcCcceEEEEecCcchhhHHHHHHHHHH--------HH-hccCCCCHHHHHHHHHHHHhcC
Confidence 3333 667799995 56666 7999887532110 00000000 00 0013444445555555554311
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 315 RFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
. +.++..+++++++++++.+.|.+++++.+..+.. +.++++.++.. ...+..+..++++.|.+++||.+.++..+
T Consensus 319 ~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~--g~~~~~~l~~~-~~~~~~~~~~~~~~l~~~~gV~v~~g~~~ 393 (427)
T 3dyd_A 319 G--EFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSG--AMYLMVGIEME-HFPEFENDVEFTERLVAEQSVHCLPATCF 393 (427)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSB--TTEEEEEECGG-GCTTCSSHHHHHHHHHHHHCEECEEGGGG
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCe--eEEEEEecCHh-hcCCCCCHHHHHHHHHHHCCEEEECCccc
Confidence 1 1467788889999999999999887887665554 66777776521 00112456788888865569999876654
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcccc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQV 445 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~~ 445 (452)
..++++|+++. +++++|++++++|++++++-.+
T Consensus 394 ----------------~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~~ 426 (427)
T 3dyd_A 394 ----------------EYPNFIRVVIT--VPEVMMLEACSRIQEFCEQHYH 426 (427)
T ss_dssp ----------------TCTTEEEEESC--SCHHHHHHHHHHHHHHHHHHCC
T ss_pred ----------------CCCCeEEEEEC--CCHHHHHHHHHHHHHHHHHhhc
Confidence 22579999987 5899999999999999876443
No 47
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.98 E-value=1.4e-30 Score=256.42 Aligned_cols=348 Identities=11% Similarity=0.014 Sum_probs=248.6
Q ss_pred hccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHH
Q 012991 33 FSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-DVGEISLVDNATTA 110 (452)
Q Consensus 33 ~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a 110 (452)
|...+..+++|..+... +.|+.+.+++.+.+.. ....+.....+..+++.+.+++.+|.+ ++++|++|+|+|+|
T Consensus 22 ~d~~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a 97 (391)
T 3dzz_A 22 WGVLKEKELPMWIAEMDFKIAPEIMASMEEKLKV----AAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPA 97 (391)
T ss_dssp TTTCCTTCEECCSSCCSSCCCHHHHHHHHHHHTT----CCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHH
T ss_pred eeccCCCceeccccCCCCCCCHHHHHHHHHHHhc----CcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHH
Confidence 33356689999887755 5678899999887643 112222234667788888888888832 26899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+. .+....+ +++|+++++ .+
T Consensus 98 ~~~~~~~l--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~l~-----~~ 159 (391)
T 3dzz_A 98 ISAMVRQF--------TSPGDQILVQEPVYNMFYSVI----EGNGRRVISSDLIY-ENSKYSVNWADLEEKLA-----TP 159 (391)
T ss_dssp HHHHHHHH--------SCTTCEEEECSSCCHHHHHHH----HHTTCEEEECCCEE-ETTEEECCHHHHHHHHT-----ST
T ss_pred HHHHHHHh--------CCCCCeEEECCCCcHHHHHHH----HHcCCEEEEeeeee-cCCceeecHHHHHHHHh-----cc
Confidence 99999987 488999999999999876655 45699999885421 0111123 899999994 26
Q ss_pred ceEEEEEeccCCCCcccc---cHHHHHHHHHHcCCCEEEEecccccCC----ccccccccC---cc--EEEEcCcccCcC
Q 012991 190 MIRLAIIDHITSMPCVVI---PVRKLVKICRDEGVDQVFVDAAHAMGS----IKIDVKEIG---AD--FYVSNLHKWFFC 257 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~---~l~~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~~~---~d--~~~~s~~K~l~g 257 (452)
++++|++++++||||.++ ++++|+++|++||+ ++|+|++|+.+. ...++...+ +| +++.|+||++ |
T Consensus 160 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~-g 237 (391)
T 3dzz_A 160 SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQV-LLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTF-N 237 (391)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHH-T
T ss_pred CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCC-EEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhc-c
Confidence 899999999999999994 57788999999999 899999987533 223333332 55 8999999974 4
Q ss_pred CCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 258 ~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
++| +|+++++ +++.+. + .... ......+++...+.++.++++.... ..+.++++.+++++++
T Consensus 238 ~~G~r~G~~~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l 302 (391)
T 3dzz_A 238 LAALHAACAIIPNPDLRAR-A-EESF----------FLAGIGEPNLLAIPAAIAAYEEGHD---WLRELKQVLRDNFAYA 302 (391)
T ss_dssp CTTTCCEEEECCSHHHHHH-H-HHHH----------HHHTCSSCCTTHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHH
T ss_pred ccchhheEEEECCHHHHHH-H-HHHH----------HhhccCCCCHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHH
Confidence 444 8998887 666554 1 1110 0001123444454555555544222 3678888899999999
Q ss_pred HHHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 335 ARMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 335 ~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.+.|.+ ++++.+..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.. ..+
T Consensus 303 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------~~~ 361 (391)
T 3dzz_A 303 REFLAKEVPEVKVLDSNA--SYLAWVDISA-----LGMNAEDFCKYLREKTGLIISAGNGYRG--------------NGH 361 (391)
T ss_dssp HHHHHHHCTTSEECCCCB--SSEEEEECGG-----GCSCHHHHHHHHHHHHCEECEESGGGCT--------------TGG
T ss_pred HHHHHhhCCCcEEeccCc--eEEEEEehhh-----cCCCHHHHHHHHHHhCCEEEeCchhhCC--------------CCC
Confidence 999998 67887766554 5566777752 1346788999996345999987665422 336
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++ ++++++++++++|++++++
T Consensus 362 ~~iRis~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 362 EFVRINLA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp GEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 89999998 5899999999999999865
No 48
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.98 E-value=8.8e-31 Score=257.78 Aligned_cols=352 Identities=12% Similarity=0.114 Sum_probs=239.9
Q ss_pred CCCCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC
Q 012991 22 RCISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD 96 (452)
Q Consensus 22 ~~~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~ 96 (452)
....+....+.....++.+++|+.+.+. ..|+.+.+++.+.+... ...| .......++++.+++++ |++
T Consensus 14 ~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~y--~~~~g~~~l~~~la~~~~~~~g~~ 87 (388)
T 1j32_A 14 MTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQG----KTRY--GPAAGEPRLREAIAQKLQRDNGLC 87 (388)
T ss_dssp SSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTT----CCSC--CCTTCCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEECCCCCCCCCCCHHHHHHHHHHHhcC----CCCC--CCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3444444434333346778999887765 45777889888776431 1112 11222344555555554 542
Q ss_pred -CCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-H
Q 012991 97 -DVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-I 174 (452)
Q Consensus 97 -~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~ 174 (452)
+++++++|+|+|+|+.+++.++ +++||+|++++++|++....+ +..|.+++.++.+. ++.+.+ +
T Consensus 88 ~~~~~v~~~~g~~~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~ 153 (388)
T 1j32_A 88 YGADNILVTNGGKQSIFNLMLAM--------IEPGDEVIIPAPFWVSYPEMV----KLAEGTPVILPTTV--ETQFKVSP 153 (388)
T ss_dssp CCGGGEEEESHHHHHHHHHHHHH--------CCTTCEEEEESSCCTHHHHHH----HHTTCEEEEECCCG--GGTTCCCH
T ss_pred CChhhEEEcCCHHHHHHHHHHHh--------cCCCCEEEEcCCCChhHHHHH----HHcCCEEEEecCCc--ccCCCCCH
Confidence 3579999999999999999987 478999999999999876554 45699999985421 112233 8
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc----ccccc-----c
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKE-----I 242 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~-----~ 242 (452)
++|++++ .+++++|++++++||||.++| +++|+++|+++|+ ++|+|++++.+... ..+.. .
T Consensus 154 ~~l~~~l------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~ 226 (388)
T 1j32_A 154 EQIRQAI------TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGL-WVLSDEIYEKILYDDAQHLSIGAASPEAY 226 (388)
T ss_dssp HHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred HHHHHhc------CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEEccchhcccCCCCCCCHHHcccccc
Confidence 9999998 568999999999999999976 8899999999999 79999998764321 11111 3
Q ss_pred CccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCH
Q 012991 243 GADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGI 320 (452)
Q Consensus 243 ~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~ 320 (452)
+.|+++.|+||+ +|++| +|++++++++++. + .... .....+.+...+ .++...+.......
T Consensus 227 ~~~~~~~s~sK~-~~~~G~r~G~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~---~a~~~~l~~~~~~~ 289 (388)
T 1j32_A 227 ERSVVCSGFAKT-YAMTGWRVGFLAGPVPLVKA-A-TKIQ-----------GHSTSNVCTFAQ---YGAIAAYENSQDCV 289 (388)
T ss_dssp HTEEEEEESTTT-TTCTTTCCEEEECCHHHHHH-H-HHHH-----------HTTTCSCCHHHH---HHHHHHHHSCSHHH
T ss_pred CCEEEEeechhc-cCCcccceEEEEeCHHHHHH-H-HHHH-----------hhcccCCCHHHH---HHHHHHHhCCcHHH
Confidence 578999999997 57677 8999998877654 1 1110 000011222222 22333333211136
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCC
Q 012991 321 DGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQ 400 (452)
Q Consensus 321 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~ 400 (452)
+.++++++++++++.+.|.+++++++..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~----- 357 (388)
T 1j32_A 290 QEMLAAFAERRRYMLDALNAMPGLECPKPDG--AFYMFPSIAK-----TGRSSLDFCSELLDQHQVATVPGAAFG----- 357 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB--TTEECCBCGG-----GTCCHHHHHHHHHHHHCEECEEGGGGT-----
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcccCCCe--eEEEEEecCC-----CCCCHHHHHHHHHHhCCEEEeChhhhC-----
Confidence 7788888999999999998877887765543 4556665541 024667899888764699997765541
Q ss_pred CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 401 PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 401 ~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|++++ +++++++++++.|++++++
T Consensus 358 -----------~~~~iRis~~--~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 358 -----------ADDCIRLSYA--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp -----------CTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 2478999997 5899999999999988753
No 49
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.98 E-value=8.9e-32 Score=262.05 Aligned_cols=345 Identities=14% Similarity=0.116 Sum_probs=241.8
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch------hhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecCh-hHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDD------FYFNSLRKGILESRAAVKDLINADDVGEISLVDNA-TTAA 111 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~-t~a~ 111 (452)
.+++++.+ +.+.|+.|++++.+.+... .+++. .+.+...+..+++++++++++|+++++++++|+|+ |+|+
T Consensus 3 ~~~~~~~g-~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al 80 (360)
T 1w23_A 3 QVFNFNAG-PSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CCEECCSS-SCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred ceEeecCC-CcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHH
Confidence 34455544 5588888999998876432 12211 11344566789999999999999645699999998 9999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHH-HHhccccCCC
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKK-GIEKGKKDGK 189 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~-~i~~~~~~~~ 189 (452)
.+++.++... -++++.|+++.++|.+. .. +...| +++.++++. +++.+ ++++++ ++ ++
T Consensus 81 ~~~~~~l~~~-----~~~g~~vi~~~~~~~~~----~~-~~~~g-~~~~v~~~~---~~~~~d~~~l~~~~i------~~ 140 (360)
T 1w23_A 81 TMLPMNLLTK-----GTIGNYVLTGSWSEKAL----KE-AKLLG-ETHIAASTK---ANSYQSIPDFSEFQL------NE 140 (360)
T ss_dssp HHHHHHHCCT-----TCEEEEEECSHHHHHHH----HH-HHTTS-EEEEEEECG---GGTSCSCCCGGGCCC------CT
T ss_pred HHHHHHhcCC-----CCcccEEEecchhHHHH----HH-HHHhC-CeEEeeccc---ccCcCCccchHhhcc------CC
Confidence 9999887410 13466788877777652 11 45678 999996521 12222 567776 66 57
Q ss_pred ceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 190 MIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
++++|++++++||||.++| +| +++||+ ++|+|++|+.+..++++..+ |++++|+||+ +|+.|+|+++++++
T Consensus 141 ~~k~v~~~~~~nptG~~~~--~i---~~~~~~-~li~D~a~~~~~~~~~~~~~--di~~~s~sK~-~~~~G~G~~~~~~~ 211 (360)
T 1w23_A 141 NDAYLHITSNNTIYGTQYQ--NF---PEINHA-PLIADMSSDILSRPLKVNQF--GMIYAGAQKN-LGPSGVTVVIVKKD 211 (360)
T ss_dssp TEEEEEEESEETTTTEECS--SC---CCCCSS-CEEEECTTTTTSSCCCGGGC--SEEEEETTTT-TSCTTCEEEEEEHH
T ss_pred CCCEEEEeCCCCCcceecc--cc---cccCCc-eEEEechhhcCCCCcCcccC--CEEEEEcccc-cCCCCcEEEEEcHH
Confidence 8999999999999999987 33 338999 69999999998877766544 8999999996 67889999999988
Q ss_pred ccccCCCCCceeccCCCCcc-cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcC
Q 012991 270 ILSSDMHHPVVSHEFGNGLP-IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLG 347 (452)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~ 347 (452)
+++. + .+...+....... ......++++...++++.++++++.+. ++++.++++.+++++++.+.|.+++++ ...
T Consensus 212 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 288 (360)
T 1w23_A 212 LLNT-K-VEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDL-GGAEAIAKQNEEKAKIIYDTIDESNGFYVGH 288 (360)
T ss_dssp HHCS-C-CTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHTTTTSSEES
T ss_pred HHhh-c-ccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 8765 2 2221100000000 011223567777777777788876641 257889999999999999999987544 332
Q ss_pred C-CcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 348 S-PPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
. +....+.++++.++ +..+..++.+.|.+ .||.+..+.. .++++|++++.++++
T Consensus 289 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~-~gi~~~~~~~------------------~~~~iRis~~~~~~~ 343 (360)
T 1w23_A 289 AEKGSRSLMNVTFNLR------NEELNQQFLAKAKE-QGFVGLNGHR------------------SVGGCRASIYNAVPI 343 (360)
T ss_dssp SCGGGBCSSEEEEECS------SHHHHHHHHHHHHH-TTEESCBCCT------------------TTCSEEEECCTTSCH
T ss_pred CCchhccCcEEEEEcC------CCccHHHHHHHHHH-CCeeeecCCC------------------CCCeEEEEecCCCCH
Confidence 1 22222448888886 23456778888866 5999854322 146899999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+|+++++++|++++++
T Consensus 344 ~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 344 DACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 50
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.98 E-value=1.9e-30 Score=252.19 Aligned_cols=325 Identities=12% Similarity=0.062 Sum_probs=242.7
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
.++.+++|+.+... +.|+.+.+++.+.+..... + +.....+++++++++++++ ++++++|+|+|+|+.++
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-------y-~~~~~~~l~~~la~~~~~~-~~~i~~~~g~~~a~~~~ 84 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAVVKANR-------Y-AKNEILMLGNKLAAHHQVE-APSILLTAGSSEGIRAA 84 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTGGGTTS-------C-CHHHHHHHHHHHHHHTTSC-GGGEEEESHHHHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHhhCcC-------C-CCCchHHHHHHHHHHhCCC-hHHEEEeCChHHHHHHH
Confidence 45778999887655 5778899999886643211 1 2346789999999999985 78999999999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
+.++ .++||+|+++.++|++....+ +..|.+++.++. +.++.+ +++|++++++ .+++++
T Consensus 85 ~~~l--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~----~~~~~~d~~~l~~~l~~----~~~~~~ 144 (354)
T 3ly1_A 85 IEAY--------ASLEAQLVIPELTYGDGEHFA----KIAGMKVTKVKM----LDNWAFDIEGLKAAVAA----YSGPSI 144 (354)
T ss_dssp HHHH--------CCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECC----CTTSCCCHHHHHHHHHT----CSSCEE
T ss_pred HHHH--------hCCCCeEEECCCCchHHHHHH----HHcCCEEEEecC----CCCCCCCHHHHHHHhcc----CCCCCE
Confidence 9987 488999999999999876554 456999999954 333444 8999999953 268999
Q ss_pred EEEeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCccc---c----cccc-CccEEEEcCcccCcCCCC--c
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSIKI---D----VKEI-GADFYVSNLHKWFFCPPS--V 261 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~~~---~----~~~~-~~d~~~~s~~K~l~g~~G--~ 261 (452)
|++++++||||.++|.+++.++++. +|+ ++|+|++|+.+...- . .... +.++++.|+||++ |++| +
T Consensus 145 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~ 222 (354)
T 3ly1_A 145 VYLVNPNNPTGTITPADVIEPWIASKPANT-MFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIH-AMAGMRV 222 (354)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHTCCTTE-EEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTT-CCGGGCC
T ss_pred EEEeCCCCCcCCCcCHHHHHHHHHhCCCCe-EEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhc-cChhhhh
Confidence 9999999999999999988888887 999 899999987543221 1 1122 4568999999974 5444 7
Q ss_pred EEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 262 AFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 262 G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
|++++++++++. + .... ...+++...+.++.++++... .++..+++++++++++.+.|.++
T Consensus 223 G~~~~~~~~~~~-~-~~~~-------------~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~ 283 (354)
T 3ly1_A 223 GYAVAHPTVIAL-M-GRYV-------------AGEKINFSGVDAALASMNDSA----FITYSKKSNDVSRQILLKALEDL 283 (354)
T ss_dssp EEEECCHHHHHH-H-GGGT-------------TCSCCCHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecCHHHHHH-H-HHhc-------------CCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999888777664 1 1110 012344444444444544322 46778888999999999999988
Q ss_pred cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 342 WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
++.+..+ . +.++++.++ . +..++.+.|.+ +||.++ +..+ ..++++|++++
T Consensus 284 -~~~~~~~-~--~~~~~~~~~-------~-~~~~~~~~l~~-~gi~v~-g~~~----------------~~~~~iRis~~ 333 (354)
T 3ly1_A 284 -KLPYLPS-E--GNFVFHQLV-------V-PLKDYQTHMAD-AGVLIG-RAFP----------------PADNWCRISLG 333 (354)
T ss_dssp -TCCBCCC-C--SSEEEEECS-------S-CHHHHHHHHHH-TTEECC-CCCT----------------TCTTEEEEECC
T ss_pred -CCeECCC-C--ceEEEEECC-------C-CHHHHHHHHHH-CCEEEe-ecCC----------------CCCCEEEEEcC
Confidence 7776533 2 567888886 2 56789999976 599987 4432 23579999987
Q ss_pred ccCCHHHHHHHHHHHHHHHhcc
Q 012991 422 VYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~~ 443 (452)
+++|+++++++|+++++.+
T Consensus 334 ---~~~~i~~~~~~l~~~l~~~ 352 (354)
T 3ly1_A 334 ---TPQEMQWVADTMREFRKKS 352 (354)
T ss_dssp ---CHHHHHHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHHHHHHHhh
Confidence 8999999999999998764
No 51
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.98 E-value=6.4e-31 Score=257.14 Aligned_cols=326 Identities=14% Similarity=0.167 Sum_probs=238.2
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCCCcEEEecChh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDVGEISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~i~~t~g~t 108 (452)
.++.+++|+.+.++ ..|+.+.+++.+.+... .. .|.......++++.++++++ ++ ++++++|+|++
T Consensus 27 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~--~y~~~~~~~~l~~~la~~~~~~~g~~~~-~~~v~~~~g~~ 99 (370)
T 2z61_A 27 EGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEG----KT--HYTDSRGILELREKISELYKDKYKADII-PDNIIITGGSS 99 (370)
T ss_dssp TTCCCEECCCCSCSSCCCHHHHHHHHHHHHTT----CC--SCCCTTCCHHHHHHHHHHHHHHSSCCCC-GGGEEEESSHH
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHHHHHHcC----cc--CCCCCCCCHHHHHHHHHHHHHHhCCCCC-hhhEEECCChH
Confidence 35778999988775 35777999988876531 11 12222335667777777764 43 68999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDG 188 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 188 (452)
+|+.+++.++ +++||+|++++++|++....+ ...|.+++.++ .+ +++|++.+ .
T Consensus 100 ~a~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~----~d-----~~~l~~~l------~ 152 (370)
T 2z61_A 100 LGLFFALSSI--------IDDGDEVLIQNPCYPCYKNFI----RFLGAKPVFCD----FT-----VESLEEAL------S 152 (370)
T ss_dssp HHHHHHHHHH--------CCTTCEEEEESSCCTHHHHHH----HHTTCEEEEEC----SS-----HHHHHHHC------C
T ss_pred HHHHHHHHHh--------cCCCCEEEEeCCCchhHHHHH----HHcCCEEEEeC----CC-----HHHHHHhc------c
Confidence 9999999987 478999999999999876654 44699999883 11 68899888 4
Q ss_pred CceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc---cccccc----cCccEEEEcCcccCcCCCC-
Q 012991 189 KMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKE----IGADFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~----~~~d~~~~s~~K~l~g~~G- 260 (452)
+++++|++++++||||.++|.+ |.++|++||+ ++|+|++|+.+.. +.++.. .+.|+++.|+||+ +|++|
T Consensus 153 ~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~ 229 (370)
T 2z61_A 153 DKTKAIIINSPSNPLGEVIDRE-IYEFAYENIP-YIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKL-YAMTGW 229 (370)
T ss_dssp SSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCS-EEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTT-TTCGGG
T ss_pred cCceEEEEcCCCCCcCcccCHH-HHHHHHHcCC-EEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhc-cCCccc
Confidence 6789999999999999999999 9999999999 8999999986543 222222 3578999999997 56666
Q ss_pred -cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 -VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 -~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|++++++++++. + ... ...+.++.+...+.++.++++. ... ..+.++++++++++++.+.|
T Consensus 230 r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~~l~~~L 293 (370)
T 2z61_A 230 RIGYVISNDEIIEA-I-LKL-----------QQNLFISAPTISQYAALKAFEKETER---EINSMIKEFDRRRRLVLKYV 293 (370)
T ss_dssp CCEEEECCHHHHHH-H-HHH-----------HHHHTSSSCHHHHHHHGGGGSHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHHHH-H-HHH-----------HhhcccCCCHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 8999998877664 1 111 0111123444444444444443 222 46778888999999999999
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
.++ ++++..+.. +.++++.++ . +..++.+.|.+++||.+..+..+.. ..++++|+
T Consensus 294 ~~~-g~~~~~~~~--~~~~~~~~~-------~-~~~~~~~~l~~~~gi~v~~g~~f~~--------------~~~~~~Ri 348 (370)
T 2z61_A 294 KDF-GWEVNNPIG--AYYVFPNIG-------E-DGREFAYKLLKEKFVALTPGIGFGS--------------KGKNYIRI 348 (370)
T ss_dssp HHT-TCBCCCCCB--TTEECCBCS-------S-CHHHHHHHHHHHHCEECEEGGGGCG--------------GGSSBEEE
T ss_pred HHc-CCeecCCCc--ceEEEEecC-------C-CHHHHHHHHHHhCCEEEeCchhhCC--------------CCCCEEEE
Confidence 887 777665543 566777765 2 5678889887445999977655421 13579999
Q ss_pred cccccCCHHHHHHHHHHHHHHHh
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+++ +++++++++++.|+++++
T Consensus 349 ~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 349 SYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp ECC--SCHHHHHHHHHHHHHHHC
T ss_pred EEe--CCHHHHHHHHHHHHHHHh
Confidence 999 589999999999998874
No 52
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.98 E-value=6.1e-30 Score=260.99 Aligned_cols=364 Identities=14% Similarity=0.086 Sum_probs=242.8
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCch--h-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDD--F-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
-.||+..+.+..|..+... ++... .++.. + .+....++.+++++++++++|.+ .++++||+|||+|+..++.
T Consensus 109 p~~~~~~~~~~~~~~~~~~---~l~~~-~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~-~~~~~~t~ggtea~~~al~ 183 (515)
T 2jis_A 109 PRFFNQLFSGLDPHALAGR---IITES-LNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS-SGDGIFCPGGSISNMYAVN 183 (515)
T ss_dssp TTEESSSCCCCCHHHHHHH---HHHHH-HCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCS-SCEEEEESSHHHHHHHHHH
T ss_pred CCeEEEeeCCCCHHHHHHH---HHHHH-hccCCCchhhchHHHHHHHHHHHHHHHHhCCC-CCCeEEcCCcHHHHHHHHH
Confidence 3589988888888766653 23222 22222 1 22445677888999999999997 6899999999999998888
Q ss_pred HhhcccccCCCC-CCC------EEEEeCCcchhHHHHHHHHHHhcCc---EEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 117 QIGRGFTEGRFH-RND------TVLMLHCAFQAVKKSIQAYVTRAGG---SVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 117 ~l~~~~~~~~~~-~g~------~Vl~~~~~~~s~~~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
++...+. ..++ +|+ +|+++..+|+++..++.. .|. +++.++ .++++.+ +++|+++|++..
T Consensus 184 ~ar~~~~-~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~----~g~g~~~v~~v~----~~~~~~~d~~~L~~~i~~~~ 254 (515)
T 2jis_A 184 LARYQRY-PDCKQRGLRTLPPLALFTSKECHYSIQKGAAF----LGLGTDSVRVVK----ADERGKMVPEDLERQIGMAE 254 (515)
T ss_dssp HHHHHHC-TTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH----TTSCGGGEEEEC----BCTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHh-hHHhhcCccccCCeEEEECCCccHHHHHHHHH----cCCCCCcEEEEe----cCCCCcCCHHHHHHHHHHHH
Confidence 7632110 0011 343 899999999998877654 355 888884 3444555 899999886432
Q ss_pred cCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc-----cccc-CccEEEEcCcccCcCCC
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID-----VKEI-GADFYVSNLHKWFFCPP 259 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~l~g~~ 259 (452)
..+.+|++|++++++|++|.+.|+++|+++|+++|+ ++|+|++++.+....+ +..+ ++|++++|+|||+++|.
T Consensus 255 ~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~-~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~ 333 (515)
T 2jis_A 255 AEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL-WLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGL 333 (515)
T ss_dssp HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC-EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS
T ss_pred hCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-eEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCC
Confidence 223469999999999999999999999999999999 6999999998877544 3333 78999999999988899
Q ss_pred CcEEEEEecC--cccc--CCCCCceeccCCCCcccc-cccccccCc-----cccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 260 SVAFLYCRKS--ILSS--DMHHPVVSHEFGNGLPIE-SAWIGTRDY-----SAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 260 G~G~l~~~~~--~~~~--~l~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
|+|+++++++ ++.. ....++.. +...... ....++... ....+++++++.+... |++++.++..+
T Consensus 334 g~G~l~~~~~~~~~~~~~~~~~~yl~---~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~--g~~~~~~~~~~ 408 (515)
T 2jis_A 334 QCSALLLQDTSNLLKRCHGSQASYLF---QQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQ--GLERRIDQAFV 408 (515)
T ss_dssp CCEEEEESCCSCHHHHHHCC------------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CeeEEEEeChHHHHHHHhcCCchhcc---CCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHH--HHHHHHHHHHH
Confidence 9999999877 4432 01122221 1100000 000111111 1123344455555543 78899999999
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEc-CCcccc---CChhh------HHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGL-PSRLRV---MGEDD------ALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~------~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
+++++.+.|.+++++++..++. ...++|.. |..... ..... ...+.+.|.+. |+.+......
T Consensus 409 ~a~~l~~~L~~~~g~~~~~~~~--~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~----- 480 (515)
T 2jis_A 409 LARYLVEEMKKREGFELVMEPE--FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPH----- 480 (515)
T ss_dssp HHHHHHHHHHTSTTEEESSCCS--SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEE-----
T ss_pred HHHHHHHHHhcCCCEEEeCCCC--eeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEE-----
Confidence 9999999999988888876643 34566654 311000 00110 12366677665 7644211110
Q ss_pred CCCCCCCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHHh
Q 012991 400 QPQAGARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~ 441 (452)
....+++|+++ +.++|++||++++++|+++.+
T Consensus 481 ----------~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 481 ----------GTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp ----------TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred ----------CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 12246899999 789999999999999998875
No 53
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.97 E-value=2.7e-30 Score=254.43 Aligned_cols=339 Identities=17% Similarity=0.147 Sum_probs=239.9
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCc-EEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGE-ISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~-i~~t~g~t~a 110 (452)
+++++|+.+.+. ..|+.+.+++.+.+... ... |.......++++.+++++ |.+ ++++ +++|+||++|
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~--y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a 99 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDKG----LTH--YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQA 99 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHTT----CCS--CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHH
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhCC----CCC--CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHH
Confidence 578999888765 46777999988876531 111 222223456666666666 842 3578 9999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ +++||+|++++++|++....+ +..|.+++.++++. ++...+ +++|++++ .+
T Consensus 100 ~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l------~~ 159 (389)
T 1gd9_A 100 FLMGLSAF--------LKDGEEVLIPTPAFVSYAPAV----ILAGGKPVEVPTYE--EDEFRLNVDELKKYV------TD 159 (389)
T ss_dssp HHHHHTTT--------CCTTCEEEEEESCCTTHHHHH----HHHTCEEEEEECCG--GGTTCCCHHHHHHHC------CT
T ss_pred HHHHHHHh--------CCCCCEEEEcCCCchhHHHHH----HHCCCEEEEeccCC--ccCCCCCHHHHHHhc------Cc
Confidence 99999875 478999999999999976655 44599999996531 111223 89999998 45
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccc----cCccEEEEcCcccCcCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE----IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~l~g~ 258 (452)
++++|++++++||||.++| +++|+++|++||+ ++|+|++++.+.. ..++.. .+.|+++.|+||+ +|+
T Consensus 160 ~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~ 237 (389)
T 1gd9_A 160 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDL-IVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKT-FAM 237 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTT-TTC
T ss_pred CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhh-cCC
Confidence 7899999999999999985 8889999999999 7999999987543 122222 3568999999997 566
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + .... .....+.+...+.++.++++.... ....+.++++++++++++.+
T Consensus 238 ~G~r~G~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~ 303 (389)
T 1gd9_A 238 TGWRLGFVAAPSWIIER-M-VKFQ-----------MYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWK 303 (389)
T ss_dssp GGGCCEEEECCHHHHHH-H-HHHH-----------TTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECHHHHHH-H-HHHH-----------hhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHH
Confidence 66 6999998877664 1 1110 000123333344444444443221 01367788889999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++ ++++..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.. ..++++
T Consensus 304 ~L~~~-g~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------~~~~~i 361 (389)
T 1gd9_A 304 RLNEM-GLPTVKPKG--AFYIFPRIRD-----TGLTSKKFSELMLKEARVAVVPGSAFGK--------------AGEGYV 361 (389)
T ss_dssp HHHHT-TCCCCCCCB--TTEECCBCGG-----GTCCHHHHHHHHHHHTCEECEEGGGGCG--------------GGTTBE
T ss_pred HHHHc-CCeecCCCe--eeEEEEeccC-----CCCCHHHHHHHHHHhCCEEEeCchhhCC--------------CCCCeE
Confidence 99987 777765543 5567777651 1346778999987446999977655421 235799
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++. +++++++++++|+++++.
T Consensus 362 Ri~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 362 RISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp EEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred EEEecC--CHHHHHHHHHHHHHHHHh
Confidence 999985 899999999999998865
No 54
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=1.2e-30 Score=257.93 Aligned_cols=355 Identities=12% Similarity=0.114 Sum_probs=248.7
Q ss_pred CHHHHHhhhccCC--------CCe-EEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHh
Q 012991 25 SEAEIRDEFSHHQ--------HGV-ARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLI 93 (452)
Q Consensus 25 ~~~~ir~~~~~~~--------~~~-~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~ 93 (452)
+++.+|+.||... +.+ .|+++...+ ..++.+.+++.+.+.....+++.+ ..+...+...++++++++++
T Consensus 25 ~~~~~~~~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~ 104 (401)
T 2bwn_A 25 DIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH 104 (401)
T ss_dssp EEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT
T ss_pred hhhcccccccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh
Confidence 3456788898642 233 355544434 234569999999887654433321 22345577899999999999
Q ss_pred CCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH
Q 012991 94 NADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI 173 (452)
Q Consensus 94 ~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 173 (452)
+.+ +++++++|++ ++..++.++. ...+||+|+++.++|+++..++. ..|.+++.++ .++
T Consensus 105 ~~~--~~i~~~sG~~-a~~~~~~~l~------~~~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~v~----~~d---- 163 (401)
T 2bwn_A 105 QKE--AALVFSSAYN-ANDATLSTLR------VLFPGLIIYSDSLNHASMIEGIK----RNAGPKRIFR----HND---- 163 (401)
T ss_dssp TCS--EEEEESCHHH-HHHHHHHHHH------HHSTTCEEEEETTCCHHHHHHHH----HSCCCEEEEC----TTC----
T ss_pred CCC--cEEEECCcHH-HHHHHHHHHh------cCCCCCEEEECchhhHHHHHHHH----HcCCeEEEEc----CCC----
Confidence 984 7777766655 7777766542 12588999999999999877764 4699999984 332
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-----c-cccc--cCcc
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK-----I-DVKE--IGAD 245 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~-----~-~~~~--~~~d 245 (452)
.+++++.+++.. .+++++|++++++||||.+.|+++|.++|++||+ ++|+|++|+.|... + .... ...|
T Consensus 164 ~~~le~~l~~~~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~ 240 (401)
T 2bwn_A 164 VAHLRELIAADD--PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGA-LTYIDEVHAVGMYGPRGAGVAERDGLMHRID 240 (401)
T ss_dssp HHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTC-EEEEECTTTTTTSSTTSCCHHHHHTCGGGCS
T ss_pred HHHHHHHHHhhc--cCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCC-EEEEeccccccccCCCCceeeeccCccccCc
Confidence 567777775421 1478999999999999999999999999999999 79999999965421 1 1111 1358
Q ss_pred EEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHH
Q 012991 246 FYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQ 325 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~ 325 (452)
+++.|++|+ +|++| |+++.++++.+. + ..... .. .+..++++ ..+.++.++++++.+. |++.+++
T Consensus 241 i~~~s~sK~-~~~~G-G~~~~~~~~~~~-l-~~~~~-------~~-~~~~~~~~-~~~~a~~~al~~~~~~--~~~~~~~ 305 (401)
T 2bwn_A 241 IFNGTLAKA-YGVFG-GYIAASARMVDA-V-RSYAP-------GF-IFSTSLPP-AIAAGAQASIAFLKTA--EGQKLRD 305 (401)
T ss_dssp EEEEESSST-TCSCC-EEEEECHHHHHH-H-HHHCH-------HH-HTSBCCCH-HHHHHHHHHHHHHTSH--HHHHHHH
T ss_pred EEEeechhh-ccCCC-CEEecCHHHHHH-H-HHhCc-------Cc-eecCCCCH-HHHHHHHHHHHHHHhc--ccHHHHH
Confidence 899999997 56566 888887766553 1 10000 00 00113333 4555666777777643 5688999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCC
Q 012991 326 RNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGA 405 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~ 405 (452)
+++++++++.+.|.++ ++++..+. ++++++.++ .+.+..++.+.|.+++||.+..+..+..
T Consensus 306 ~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~~~------~~~~~~~~~~~L~~~~gi~v~~~~~~~~--------- 366 (401)
T 2bwn_A 306 AQQMHAKVLKMRLKAL-GMPIIDHG---SHIVPVVIG------DPVHTKAVSDMLLSDYGVYVQPINFPTV--------- 366 (401)
T ss_dssp HHHHHHHHHHHHHHHH-TCCBCCCS---SSCEEEECC------CHHHHHHHHHHHHHHHCEECCEECTTTS---------
T ss_pred HHHHHHHHHHHHHHHC-CCcccCCC---CCeEEEEeC------ChHHHHHHHHHHHhcCCEEEeecCCCCC---------
Confidence 9999999999999988 88776543 458888886 3456778999986345999976543311
Q ss_pred CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 406 RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 406 ~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
....+++|++++.++|++|+++++++|+++++
T Consensus 367 ----~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 367 ----PRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp ----CTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred ----CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 01235899999999999999999999998864
No 55
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.97 E-value=3.3e-30 Score=261.92 Aligned_cols=366 Identities=14% Similarity=0.085 Sum_probs=246.0
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
+-.||+....++.++.+.+++..... +.+...+ ......++.+++++++++++|.++.+.++||+|||+|+..++.+
T Consensus 100 ~~~yl~~~~~~~~~~~v~~~~~~~~~--n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ 177 (497)
T 2qma_A 100 HPDCIAHLHTPPLMPAVAAEAMIAAL--NQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLML 177 (497)
T ss_dssp STTBCSSSCCCCBHHHHHHHHHHHHH--CCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHH
T ss_pred CCCeeEeCCCCCcHHHHHHHHHHHhh--cccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHH
Confidence 34699999999999999888865543 2222221 12344566777899999999996347999999999999999987
Q ss_pred hhcccc---------cCCCCC--CC-EEEEeCCcchhHHHHHHHHHHhcCc---EEEEEeCCCCCCChHHH-HHHHHHHH
Q 012991 118 IGRGFT---------EGRFHR--ND-TVLMLHCAFQAVKKSIQAYVTRAGG---SVVEVQLPFPLASEEEI-INEFKKGI 181 (452)
Q Consensus 118 l~~~~~---------~~~~~~--g~-~Vl~~~~~~~s~~~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~-~~~l~~~i 181 (452)
+...+. +.-..+ ++ +|+++..+|.++..++.. .|. +++.++ .++++.+ +++|++++
T Consensus 178 ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~----~g~g~~~v~~v~----~~~~~~~d~~~L~~~i 249 (497)
T 2qma_A 178 ARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASW----MGLGEKAVMTVD----ANADGTMDITKLDEVI 249 (497)
T ss_dssp HHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHH----TTSCGGGEEEEC----BCTTSSBCGGGHHHHH
T ss_pred HHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHH----cCCCcccEEEEe----cCCCCcCCHHHHHHHH
Confidence 421110 000111 45 899999999998877654 344 788884 3444444 78888888
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc----cccc-CccEEEEcCcccCc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID----VKEI-GADFYVSNLHKWFF 256 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~----~~~~-~~d~~~~s~~K~l~ 256 (452)
++....+.++.+|++++++|++|.+.|+++|+++|++||+ ++|+|++++.+..+.+ +..+ ++|++++|+|||++
T Consensus 250 ~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~-~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~ 328 (497)
T 2qma_A 250 AQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDM-WMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFY 328 (497)
T ss_dssp HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC-EEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTC
T ss_pred HHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCC-EEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccC
Confidence 6422112235689999999999999999999999999999 6999999988776554 2233 68999999999999
Q ss_pred CCCCcEEEEEecCc-cccCCCC--CceeccCCCCc----ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 257 CPPSVAFLYCRKSI-LSSDMHH--PVVSHEFGNGL----PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 257 g~~G~G~l~~~~~~-~~~~l~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
+|.|+|+++++++. +.. +.. .++. .... .......++..+ ..+++.++++.+.. +|++.+.++..+
T Consensus 329 ~p~~~G~l~~~~~~~~~~-~~~~~~yl~---~~~~~~~~~~~~~~~~~r~~-~al~~~~~l~~lg~--~g~~~~~~~~~~ 401 (497)
T 2qma_A 329 QTISCGALLVNDKSNFKF-LLHHADYLN---REHDELPNLVDKSIATTKRF-DALKVFMTMQNVGP--KALGDMYDHLLA 401 (497)
T ss_dssp CCSSCEEEEESCGGGGGG-GCC-----------------------CCSCCC-THHHHHHHHHHTCH--HHHHHHHHHHHH
T ss_pred CCcceEEEEEeCHHHHHH-hcCCchhcC---CccccCCCccccCCCCCCch-hHHHHHHHHHHhCH--HHHHHHHHHHHH
Confidence 99999999998654 332 211 1110 0000 000000011111 12234445555443 267888999999
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+++++.+.|.+++++++..++. .++++|.++.... ....-..++.+.|.++ |+.+..+...
T Consensus 402 ~a~~l~~~L~~~~~~~~~~~~~--~~~v~f~~~~~~~-~~~~l~~~l~~~l~~~-G~~~~~~~~~--------------- 462 (497)
T 2qma_A 402 QTLEVADMIRTNDQFELLAEPS--LSTVLFRATHETA-DLDELNKALRLEALTR-GIAVLGETIV--------------- 462 (497)
T ss_dssp HHHHHHHHHHTCTTEEECSCCS--SSEEEEEECCSSS-CHHHHHHHHHHHHHHH-TSCBCEEEEE---------------
T ss_pred HHHHHHHHHhhCCCeEEEcCCC--ceEEEEEEcCCcc-CHHHHHHHHHHHHHhC-CCEEEEeeEE---------------
Confidence 9999999999888888765544 5688888752100 0000124577777665 8877433221
Q ss_pred CCccceEEecc-cccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISH-QVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+++|+++ +.++|++||+++++.|++++++
T Consensus 463 -~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 463 -DGKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp -TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 2246899998 7889999999999999998754
No 56
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=1.1e-30 Score=257.39 Aligned_cols=330 Identities=15% Similarity=0.180 Sum_probs=236.8
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChhH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNATT 109 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t~ 109 (452)
.++.+++|+.+.+. ..|+.+.+++.+.+... ... |.......++++.+++++ |++ +++++++|+|+|+
T Consensus 39 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~--y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~ 112 (389)
T 1o4s_A 39 KGEDVINLTAGEPDFPTPEPVVEEAVRFLQKG----EVK--YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQ 112 (389)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHTTC----CCC--CCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHH
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHHHHHhcC----CCC--CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHH
Confidence 46788999888765 45777899888776421 111 222233566677777766 753 3689999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ +++||+|++++++|++....+ +..|.+++.++.+. ++...+ +++|++++ .
T Consensus 113 al~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l------~ 172 (389)
T 1o4s_A 113 ALFNAFMAL--------LDPGDEVIVFSPVWVSYIPQI----ILAGGTVNVVETFM--SKNFQPSLEEVEGLL------V 172 (389)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECCG--GGTTCCCHHHHHHTC------C
T ss_pred HHHHHHHHh--------CCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEecCC--ccCCCCCHHHHHHhc------c
Confidence 999999987 478999999999999976554 45699999996521 111223 89999988 4
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc---ccccc----cCccEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK---IDVKE----IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~~~~~----~~~d~~~~s~~K~l~g~ 258 (452)
+++++|++++++||||.++| +++|+++|+++|+ ++|+|++++.+... .++.. .+.|+++.|+||+ +|+
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~-~~~ 250 (389)
T 1o4s_A 173 GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNF-YIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKS-HSM 250 (389)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTT-TTC
T ss_pred cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhh-cCC
Confidence 67999999999999999988 8899999999999 89999999865431 12211 3679999999997 566
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + .... .....+.+.. +..++...+.. +.+.++++++++++++.+
T Consensus 251 ~G~r~G~l~~~~~~~~~-l-~~~~-----------~~~~~~~~~~---~~~a~~~~l~~---~~~~~~~~~~~~~~~l~~ 311 (389)
T 1o4s_A 251 TGWRVGYLISSEKVATA-V-SKIQ-----------SHTTSCINTV---AQYAALKALEV---DNSYMVQTFKERKNFVVE 311 (389)
T ss_dssp GGGCCEEEECCHHHHHH-H-HHHH-----------HHHTCSCCHH---HHHHHHHHTTC---CCHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEeCHHHHHH-H-HHHh-----------hhcccCCCHH---HHHHHHHHHhc---cHHHHHHHHHHHHHHHHH
Confidence 66 7999998877654 1 1110 0001112222 22333334332 578888999999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++ ++++..+.. +.++++.++ .+..++.+.|.+++||.+..+..+. .++++
T Consensus 312 ~L~~~-g~~~~~~~~--~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~f~----------------~~~~~ 364 (389)
T 1o4s_A 312 RLKKM-GVKFVEPEG--AFYLFFKVR--------GDDVKFCERLLEEKKVALVPGSAFL----------------KPGFV 364 (389)
T ss_dssp HHHHT-TCCCCCCSB--SSEEEEECS--------SCHHHHHHHHHHHHCEECEEGGGGT----------------CTTEE
T ss_pred HHHhc-CCeeecCCc--ceEEEEeCC--------CCHHHHHHHHHHHCCEEEeCchhcC----------------CCCeE
Confidence 99987 777765543 566777764 2467888888634599997765541 14699
Q ss_pred EecccccCCHHHHHHHHHHHHHHHh
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~ 441 (452)
|++++. ++++++++++.|+++++
T Consensus 365 Ris~~~--~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 365 RLSFAT--SIERLTEALDRIEDFLN 387 (389)
T ss_dssp EEECCS--CHHHHHHHHHHHHHHHT
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHh
Confidence 999984 89999999999998874
No 57
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.97 E-value=2.3e-30 Score=254.83 Aligned_cols=348 Identities=9% Similarity=0.059 Sum_probs=248.8
Q ss_pred HHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC--CCCCCcEE
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN--ADDVGEIS 102 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~i~ 102 (452)
++...+.|. +.++++|+.+..+ +.|+.+.+++.+.+.. ....+.....+..+++++.+++.+| ++ +++++
T Consensus 22 ~d~~~~~~~--~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~y~~~~~~~~~~l~~~l~~~~g~~~~-~~~v~ 94 (391)
T 4dq6_A 22 WSEMEKKYG--TNDLLPMWVADMDFKAAPCIIDSLKNRLEQ----EIYGYTTRPDSYNESIVNWLYRRHNWKIK-SEWLI 94 (391)
T ss_dssp HHCHHHHHS--CSCSEECCSSSCSSCCCHHHHHHHHHHHTT----CCCCCBCCCHHHHHHHHHHHHHHHCCCCC-GGGEE
T ss_pred eeecccccC--CCCceeccccCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCHHHHHHHHHHHHHHhCCCCc-HHHeE
Confidence 455555563 4788999888765 6678899999887643 1122233446778899999999999 54 68999
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCC-CCCCChHHH-HHHHHHH
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLP-FPLASEEEI-INEFKKG 180 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~-~~~l~~~ 180 (452)
+|+|+|+|+.+++.++ .++||+|+++.++|++....+ ...|.+++.+++. +. +....+ +++++++
T Consensus 95 ~~~g~~~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~-~~~~~~d~~~l~~~ 161 (391)
T 4dq6_A 95 YSPGVIPAISLLINEL--------TKANDKIMIQEPVYSPFNSVV----KNNNRELIISPLQKLE-NGNYIMDYEDIENK 161 (391)
T ss_dssp EESCHHHHHHHHHHHH--------SCTTCEEEECSSCCTHHHHHH----HHTTCEEEECCCEECT-TSCEECCHHHHHHH
T ss_pred EcCChHHHHHHHHHHh--------CCCCCEEEEcCCCCHHHHHHH----HHcCCeEEeeeeeecC-CCceEeeHHHHHHH
Confidence 9999999999999987 478999999999999876655 4569999988543 11 111223 8999999
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccccC-----ccEEE
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEIG-----ADFYV 248 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~~-----~d~~~ 248 (452)
+ .+ +++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ..++.... .++++
T Consensus 162 l------~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~ 233 (391)
T 4dq6_A 162 I------KD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNV-KIISDEIHSDIILKKHKHIPMASISKEFEKNTITC 233 (391)
T ss_dssp C------TT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEE
T ss_pred h------hc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCC-EEEeeccccccccCCCCccCHHHcCccccCcEEEE
Confidence 9 45 999999999999999954 7788899999999 8999999976332 22333332 33888
Q ss_pred EcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHH
Q 012991 249 SNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQ 325 (452)
Q Consensus 249 ~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~ 325 (452)
.|+||++ |++| +|++++++ ++.+. + .... .....++++...+.++.++++.... ..+.+++
T Consensus 234 ~s~sK~~-g~~G~r~G~~~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~ 297 (391)
T 4dq6_A 234 MAPTKTF-NIAGLQSSYVVLPDEKDYKL-L-DDAF----------TRIDIKRNNCFSLVATEASYNNGES---WLESFLE 297 (391)
T ss_dssp ECSHHHH-TCGGGCCEEEECCSHHHHHH-H-HHHH----------HHTTCCCCCHHHHHHHHHHHHHCHH---HHHHHHH
T ss_pred Eechhhc-cCcccceEEEEeCCHHHHHH-H-HHHH----------HhhcCCCCCHHHHHHHHHHHhchHH---HHHHHHH
Confidence 9999974 4444 78888876 55543 1 1110 0001134444444444445544222 3677888
Q ss_pred HHHHHHHHHHHHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCC
Q 012991 326 RNHEQALKMARMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG 404 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~ 404 (452)
+.+++++++.+.|.+ ++++.+..+.. +.++++.++. .+.+..++.+.|.+++||.+.++..+..
T Consensus 298 ~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------- 362 (391)
T 4dq6_A 298 YLESNIDFAIKYINENMPKLKVRKPEG--TYLLWVDFSA-----LGLSDEELESILVQKGKVALNQGNSFGI-------- 362 (391)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEECCCSB--SSEEEEECGG-----GCCCHHHHHHHHHHTTCEECEEGGGGCT--------
T ss_pred HHHHHHHHHHHHHHhhCCCCEecCCCc--cEEEEEEhhh-----cCCCHHHHHHHHHHhCCEEeeCchhhCC--------
Confidence 899999999999988 57887766554 5566677752 1346788999997756999987665422
Q ss_pred CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 405 ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 405 ~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
...+++|++++ ++++++++++++|++++
T Consensus 363 ------~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 363 ------GGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp ------TCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred ------CCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 23579999998 58999999999999876
No 58
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.97 E-value=1.1e-29 Score=252.22 Aligned_cols=341 Identities=13% Similarity=0.092 Sum_probs=239.5
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CC-CcEEEecChh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DV-GEISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~-~~i~~t~g~t 108 (452)
.+..+++|+.+... ..++.+.+++.+.+... ....|.......++++.+++++ |.+ ++ ++|++|+|++
T Consensus 35 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~-----~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~ 109 (412)
T 2x5d_A 35 RGEDIIDLSMGNPDGPTPPHIVEKLCTVAQRE-----DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSK 109 (412)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHTC--------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHH
T ss_pred cCCCEEecCCCCCCCCCCHHHHHHHHHHHhCC-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChH
Confidence 46778999887765 35677888888765432 0112222344567777888877 753 25 6999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+|+.+++.++ +++||+|+++.++|++....+. ..|.+++.++... +....+ +++|++++
T Consensus 110 ~a~~~~~~~~--------~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~--~~~~~~d~~~l~~~i------ 169 (412)
T 2x5d_A 110 EGLAHLMLAT--------LDHGDTILVPNPSYPIHIYGAV----IAGAQVRSVPLVP--GIDFFNELERAIRES------ 169 (412)
T ss_dssp HHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHHH----HHTCEEEEEECST--TSCHHHHHHHHHHTE------
T ss_pred HHHHHHHHHh--------CCCCCEEEEcCCCchhHHHHHH----HcCCEEEEeecCC--ccCCCCCHHHHHHhc------
Confidence 9999999987 4789999999999998766654 4599999986531 112234 88899888
Q ss_pred CCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccc----cCccEEEEcCcccCc
Q 012991 188 GKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE----IGADFYVSNLHKWFF 256 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~l~ 256 (452)
.+++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ..++.. .+.|+++.|+||+ +
T Consensus 170 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~-~ 247 (412)
T 2x5d_A 170 IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDV-MVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKS-Y 247 (412)
T ss_dssp ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-C-C
T ss_pred ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCC-EEEEeccccccccCCCCCCChhhccCccCcEEEEecCccc-c
Confidence 467899999999999999987 5788999999999 8999999987542 122222 3568999999997 5
Q ss_pred CCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 257 CPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 257 g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
|++| +|++++++++++. + ... ......+.+...+.++.++++... ..++.++++++++++++
T Consensus 248 ~~~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~l 311 (412)
T 2x5d_A 248 NMAGWRIGFMVGNPELVSA-L-ARI-----------KSYHDYGTFTPLQVAAIAALEGDQ---QCVRDIARQYQQRRDVL 311 (412)
T ss_dssp SCTTSCCEEEEECHHHHHH-H-HHH-----------HHHHCCCCCHHHHHHHHHHHHSCS---HHHHHHHHHHHHHHHHH
T ss_pred CCcccceEEEEcCHHHHHH-H-HHH-----------HhhhccCCCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHH
Confidence 5555 7999998877764 1 111 000112333334333333333211 13677888899999999
Q ss_pred HHHHHHHcCCCcCCCcccccceEEEEcCCccccCChh---hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 335 ARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGED---DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 335 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
.+.|.++ ++.+..+.. +.++++.++. +. +..++.+.|.+++||.+..+..+.. .
T Consensus 312 ~~~L~~~-g~~~~~~~~--g~~~~~~~~~------~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--------------~ 368 (412)
T 2x5d_A 312 VKGLREA-GWMVENPKA--SMYVWAKIPE------PYAHLGSLEFAKKLLQDAKVSVSPGIGFGD--------------Y 368 (412)
T ss_dssp HHHHHHH-TCCCCCCSB--SSEEEEECCT------TTGGGCHHHHHHHHHHHHCEECEEGGGGCG--------------G
T ss_pred HHHHHHC-CCEecCCCe--eeEEEEEcCC------ccCCCCHHHHHHHHHHHCCEEEeCchhhCC--------------C
Confidence 9999988 777765543 5678888862 33 5678888886546999987665421 2
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
.++++|++++. ++++++++++.|+++++...
T Consensus 369 ~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 369 GDDHVRFALIE--NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp GTTEEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEecC--CHHHHHHHHHHHHHHHHhcC
Confidence 35799999996 89999999999999987543
No 59
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=4.1e-30 Score=252.65 Aligned_cols=337 Identities=11% Similarity=0.125 Sum_probs=242.3
Q ss_pred CCCeEEeccCCC-C-CCcHHHHHHHHHHHHHHhc-CCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSF-G-SCPKSVLADQQKWQLKFLQ-QPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
+..++.|..+.. + +.++.+.+++.+.+..... ++...+.+...+...++++.+++++|++ +.+++++||+++..
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~~ 114 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYS---RALLFISGFAANQA 114 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHH
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCC---cEEEeCCcHHHHHH
Confidence 445666666553 5 4678899999988865421 1122233344577899999999999984 46666777999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++ .++||.|+++.+.|.+...++ ...|.+++.++ ..+ .++|++.+++. .+++++
T Consensus 115 ~~~~~--------~~~gd~v~~~~~~~~~~~~~~----~~~g~~~~~~~----~~d----~~~l~~~l~~~---~~~~~~ 171 (384)
T 1bs0_A 115 VIAAM--------MAKEDRIAADRLSHASLLEAA----SLSPSQLRRFA----HND----VTHLARLLASP---CPGQQM 171 (384)
T ss_dssp HHHHH--------CCTTCEEEEETTCCHHHHHHH----HTSSSEEEEEC----TTC----HHHHHHHHHSC---CSSCEE
T ss_pred HHHHh--------CCCCcEEEEcccccHHHHHHH----HHcCCCEEEeC----CCC----HHHHHHHHHhc---CCCCeE
Confidence 99876 478999999999999876665 44699999884 322 67888888642 224789
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---c---cccccCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---I---DVKEIGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~---~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
|++++++||||.+.|+++|.++|++||+ ++|+|++|+.+... . +....++|+++.|+||+ +++.| |+++++
T Consensus 172 v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~-~~~~G-G~~~~~ 248 (384)
T 1bs0_A 172 VVTEGVFSMDGDSAPLAEIQQVTQQHNG-WLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKG-FGVSG-AAVLCS 248 (384)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHTTC-EEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSST-TSSCC-EEEEEC
T ss_pred EEEeCCCCCCCCccCHHHHHHHHHHcCc-EEEEECCcccceecCCCCchHHhcCCCCcEEEeeccch-hhccC-cEEEeC
Confidence 9999999999999999999999999999 79999999876532 1 11123589999999997 56888 999998
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + ..... .....++.+...+.++.++++.+.+. ..+.++++++++++++.+.|.++ ++++.
T Consensus 249 ~~~~~~-l-~~~~~---------~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 314 (384)
T 1bs0_A 249 STVADY-L-LQFAR---------HLIYSTSMPPAQAQALRASLAVIRSD--EGDARREKLAALITRFRAGVQDL-PFTLA 314 (384)
T ss_dssp HHHHHH-H-HHHCH---------HHHSSBCCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHHHHTTS-SCEEC
T ss_pred HHHHHH-H-HHhch---------hhhcCCCCCHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHhc-CCccc
Confidence 877664 1 11000 00011234444555555566665521 24678888999999999999886 66654
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
. . .++++++.++ .+.+..++.+.|.++ ||.+..+..+.. ....+++|++++..++++
T Consensus 315 ~-~--~~~~~~~~~~------~~~~~~~l~~~l~~~-gi~v~~~~~~~~-------------~~~~~~~Ri~~~~~~~~~ 371 (384)
T 1bs0_A 315 D-S--CSAIQPLIVG------DNSRALQLAEKLRQQ-GCWVTAIRPPTV-------------PAGTARLRLTLTAAHEMQ 371 (384)
T ss_dssp S-C--CSSBCCEEEE------SHHHHHHHHHHHHHT-TEECCEECTTSS-------------CTTCEEECCBCCTTCCHH
T ss_pred C-C--CCCEEEEEeC------CHHHHHHHHHHHHHC-CcEEEeecCCCC-------------CCCCceEEEEEcCCCCHH
Confidence 2 2 2567777775 345678899999775 999976554311 123478999999888999
Q ss_pred HHHHHHHHHHHH
Q 012991 428 DYEKFRDAVILL 439 (452)
Q Consensus 428 di~~l~~~l~~~ 439 (452)
|+++++++|+++
T Consensus 372 ~i~~~~~~l~~~ 383 (384)
T 1bs0_A 372 DIDRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
No 60
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=1.5e-30 Score=255.95 Aligned_cols=335 Identities=16% Similarity=0.139 Sum_probs=235.5
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChhH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNATT 109 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t~ 109 (452)
.++.+++|+.+.+. +.|+.+.+++.+.+... ... |....+..++++.+++++ |.+ ++++|++|+|+++
T Consensus 29 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~--y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~ 102 (385)
T 1b5p_A 29 QGVDLVALTAGEPDFDTPEHVKEAARRALAQG----KTK--YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQ 102 (385)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHHTT----CCS--CCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHH
T ss_pred cCCCEEEecCCCCCCCCCHHHHHHHHHHHhcC----CCC--CCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHH
Confidence 45678999887765 45677888887766431 111 222233456666677666 432 3679999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ +++||+|+++.|+|++....+ +..|.+++.++++. ++...+ ++++++++ .
T Consensus 103 al~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l------~ 162 (385)
T 1b5p_A 103 ALFNLFQAI--------LDPGDEVIVLSPYWVSYPEMV----RFAGGVVVEVETLP--EEGFVPDPERVRRAI------T 162 (385)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEECCG--GGTTCCCHHHHHTTC------C
T ss_pred HHHHHHHHh--------cCCCCEEEEcCCCchhHHHHH----HHcCCEEEEeecCc--ccCCCCCHHHHHHhc------C
Confidence 999999987 589999999999998865554 45699999996521 111223 78999888 5
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccccccc--CccEEEEcCcccCcCCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKEI--GADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~~--~~d~~~~s~~K~l~g~~G 260 (452)
+++++|++++++||||.++| +++|+++|++||+ ++|+|++++.... ..++..+ +.++++.|+||+ +|++|
T Consensus 163 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~-~~~~G 240 (385)
T 1b5p_A 163 PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDF-YLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKA-FAMTG 240 (385)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTT-TTCGG
T ss_pred CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCC-EEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhh-cCCcc
Confidence 67999999999999999987 7789999999999 8999999875432 1122222 557889999996 77667
Q ss_pred --cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH---HHHhhcCHHHHHHHHHHHHHHHH
Q 012991 261 --VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF---VSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 261 --~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
+|++++++++++. + .... .....+.+...+.++.++++. ... .++.++++++++++++.
T Consensus 241 ~RiG~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~ 304 (385)
T 1b5p_A 241 WRIGYACGPKEVIKA-M-ASVS-----------RQSTTSPDTIAQWATLEALTNQEASRA---FVEMAREAYRRRRDLLL 304 (385)
T ss_dssp GCCEEEECCHHHHHH-H-HHHH-----------HTTTCSCCHHHHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCHHHHHH-H-HHHH-----------hhccCCCCHHHHHHHHHHHhCCCcchH---HHHHHHHHHHHHHHHHH
Confidence 8999998777654 1 1110 000112333333334444432 222 36778888899999999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.++ ++++..++. +.++++.++. .+.+..++.+.|.+ +||.+..+..+. . +++
T Consensus 305 ~~L~~~-g~~~~~~~~--~~~~~~~~~~-----~~~~~~~l~~~l~~-~gv~v~~g~~f~---------------~-~~~ 359 (385)
T 1b5p_A 305 EGLTAL-GLKAVRPSG--AFYVLMDTSP-----IAPDEVRAAERLLE-AGVAVVPGTDFA---------------A-FGH 359 (385)
T ss_dssp HHHHHH-TCCBCCCSB--TTEEEEECTT-----TCSSHHHHHHHHHH-TTEECEESGGGT---------------C-TTE
T ss_pred HHHHHC-CCeecCCCe--eEEEEEecCC-----CCCCHHHHHHHHHH-CCeEEecccccC---------------C-CCe
Confidence 999988 887766554 5677777641 13467789999875 599998765541 1 479
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHh
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+|+|++ ++.++++++++.|+++++
T Consensus 360 iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 360 VRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp EEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHh
Confidence 999998 589999999999887664
No 61
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.97 E-value=2.1e-30 Score=251.94 Aligned_cols=334 Identities=11% Similarity=0.114 Sum_probs=238.3
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
.+.++||+++..++.|+.+.+++.+.+.. +. ......+..+++++++++++|.+ ++++++|+|||+|+..++.
T Consensus 12 ~p~~i~l~~~~~~~~~~~v~~a~~~~~~~---~~---~~~g~~~~~~~~~~~l~~~~g~~-~~~v~~~~g~t~a~~~~~~ 84 (359)
T 1svv_A 12 KPKPYSFVNDYSVGMHPKILDLMARDNMT---QH---AGYGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACS 84 (359)
T ss_dssp ---CEECSCSCSSCCCHHHHHHHHHHTTC---CC---CSTTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHH
T ss_pred CCeeEEecCCCcCCCCHHHHHHHHHHHhh---cc---ccccccHHHHHHHHHHHHHhCCC-CccEEEeCCchHHHHHHHH
Confidence 34589999988888889999999887642 11 12334677899999999999985 7899999999999999999
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc-cCCCceEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK-KDGKMIRLA 194 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~-~~~~~~~lv 194 (452)
++ .++||+|++++++|+++..+ . .+...|.+++.++. + ++.+ +++|++.+++.. .++.++++|
T Consensus 85 ~~--------~~~gd~vl~~~~~~~~~~~~-~-~~~~~g~~~~~v~~----~-~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 85 LA--------LRPWEAVIATQLGHISTHET-G-AIEATGHKVVTAPC----P-DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp HH--------CCTTEEEEEETTSHHHHSST-T-HHHHTTCCEEEECC----T-TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred HH--------hCCCCEEEEcccchHHHHHH-H-HHhcCCCeeEEEeC----C-CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 87 47899999999999987653 1 13556999999953 3 2334 889999886420 112358999
Q ss_pred EEeccCCCCccccc---HHHHHHHHHHcCCCEEEEeccc---ccCCccccccc----cCccEEEEcCcccCcCCCCcEEE
Q 012991 195 IIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAH---AMGSIKIDVKE----IGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 195 ~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~---~~g~~~~~~~~----~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
+++++ ||||.++| +++|.++|++||+ ++|+|+++ +.|..+.+... ..+|++++|++|+ +++.|.|++
T Consensus 150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l 226 (359)
T 1svv_A 150 YISNT-TEVGTQYTKQELEDISASCKEHGL-YLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALI 226 (359)
T ss_dssp EEESS-CTTSCCCCHHHHHHHHHHHHHHTC-EEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEE
T ss_pred EEEcC-CCCceecCHHHHHHHHHHHHHhCC-EEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEE
Confidence 99998 78999998 8889999999999 79999998 55655544332 3579999999996 888889999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. + .+... .+... .........+ ....+.. ++++.++++++++++++.+.| +.+++
T Consensus 227 ~~~~~~~~~-~-~~~~~--~~~~~-------~~~~~~~~~~---~~~~l~~--~~~~~~~~~~~~~~~~l~~~L-~~~~~ 289 (359)
T 1svv_A 227 ILNDALKPN-A-RHLIK--QRGAL-------MAKGWLLGIQ---FEVLMKD--NLFFELGAHSNKMAAILKAGL-EACGI 289 (359)
T ss_dssp ECSGGGCTT-H-HHHHH--HTTCC-------CTTTHHHHHH---HHHHTST--THHHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred EEcccHHHH-H-HHHHh--cCCcc-------cccchhhHHH---HHHHHhh--hhHHHHHHHHHHHHHHHHHHh-ccCCe
Confidence 998887765 2 11100 00000 0000011111 1222332 256788899999999999999 66788
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
++..+.. ++++++.++ .++.+.|.+++||.+.. ... ..++++|++++..+
T Consensus 290 ~~~~~~~--~~~~~~~~~-----------~~~~~~l~~~~gi~v~~-~~~----------------~~~~~iRi~~~~~~ 339 (359)
T 1svv_A 290 RLAWPSA--SNQLFPILE-----------NTMIAELNNDFDMYTVE-PLK----------------DGTCIMRLCTSWAT 339 (359)
T ss_dssp CBSSCCS--SSEECBEEE-----------HHHHHHHTTTEECEEEE-EET----------------TTEEEEEEECCTTC
T ss_pred EEccCCc--cceEEEEcC-----------HHHHHHHHHhcCEEEEe-ccc----------------CCCceEEEEccCcC
Confidence 8776544 566666543 36888887755999821 111 23579999998888
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
+++|+++++++|+++++.
T Consensus 340 ~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 340 EEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp CHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999987753
No 62
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.97 E-value=5.9e-30 Score=256.04 Aligned_cols=359 Identities=16% Similarity=0.202 Sum_probs=247.3
Q ss_pred CCCCHHHHHhhhccC---CC--CeEEeccCCCC-CCcHHHHHHH--HHHHHHHhcCCch-hhhhhhhHHHHHHHHHHHhH
Q 012991 22 RCISEAEIRDEFSHH---QH--GVARINNGSFG-SCPKSVLADQ--QKWQLKFLQQPDD-FYFNSLRKGILESRAAVKDL 92 (452)
Q Consensus 22 ~~~~~~~ir~~~~~~---~~--~~~~l~~~~~~-~~p~~v~e~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~ 92 (452)
..++..+++++|+.+ .. -+.|++.+.++ ..|+.+.+.+ ..+... ..+.. ....+..+..++++++++++
T Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~la~~ 120 (438)
T 1wyu_A 43 EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTA--YTPYQPEVSQGVLQATFEYQTMIAEL 120 (438)
T ss_dssp CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHC--CSCCSGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhc--CCCCcchhhhhHHHHHHHHHHHHHHH
Confidence 457888999988752 12 12355555443 4677554443 222221 11211 11344567789999999999
Q ss_pred hCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 93 INADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 93 ~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
+|++ ++++++++|+|.+++.+..++. +++||+|+++.++|+++..++..+++..|++++.++.+ ++.
T Consensus 121 ~g~~-~~~i~~~~g~taa~ea~~~a~~-------~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~-----~~~ 187 (438)
T 1wyu_A 121 AGLE-IANASMYDGATALAEGVLLALR-------ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE-----GGR 187 (438)
T ss_dssp HTSS-EECSCBSSHHHHHHHHHHHHHH-------HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB-----TTB
T ss_pred hCCC-ccceEEeCcHHHHHHHHHHHHh-------cCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc-----CCc
Confidence 9996 6788999999966555555441 36899999999999999999988788899999999531 121
Q ss_pred H-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecc-cccCCccccccccCccEEEEc
Q 012991 173 I-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAA-HAMGSIKIDVKEIGADFYVSN 250 (452)
Q Consensus 173 ~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a-~~~g~~~~~~~~~~~d~~~~s 250 (452)
+ +++ + +++|++|+++++ |++|.+.|+++|+++|+++|+ ++|+|.. ++.|....+ ..+++|++++|
T Consensus 188 ~d~~~----i------~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~-~vivd~d~~a~g~~~~~-~~~g~D~~~~s 254 (438)
T 1wyu_A 188 TPLPE----V------GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGA-LFVAVADPLSLGVLKPP-GAYGADIAVGD 254 (438)
T ss_dssp CCCCC----C------CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTC-EEEEECCTTGGGTBCCH-HHHTCSEEEEE
T ss_pred cCHHH----h------CCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCC-EEEEEechhhccCcCCC-ccCCCCEEEEC
Confidence 1 222 4 568999999998 999999999999999999999 7997754 666654433 44679999999
Q ss_pred Ccc-----cCcCCCCcEEEEEecCccccCCCCCceec---cCCCC--ccc--------ccccccccCc---cccccHHHH
Q 012991 251 LHK-----WFFCPPSVAFLYCRKSILSSDMHHPVVSH---EFGNG--LPI--------ESAWIGTRDY---SAQLVIPSA 309 (452)
Q Consensus 251 ~~K-----~l~g~~G~G~l~~~~~~~~~~l~~~~~~~---~~~~~--~~~--------~~~~~~~~~~---~~~~~~~~a 309 (452)
.+| |++|| |+|++++++++++. + .+.... +..+. ... .....+++++ ..+.++.++
T Consensus 255 ~kk~~~~~~~~Gp-~~G~l~~~~~~~~~-l-~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa 331 (438)
T 1wyu_A 255 GQSLGLPMGFGGP-HFGFLATKKAFVRQ-L-PGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGA 331 (438)
T ss_dssp CTTTTCCCGGGCS-CCEEEEECGGGGGG-C-CSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHH
T ss_pred CcccCCCccCCCC-CeeEEEEcHHHHHh-C-CCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHH
Confidence 777 66777 78999999887775 2 222100 00000 000 0122455655 233444444
Q ss_pred --HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceE
Q 012991 310 --VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVE 387 (452)
Q Consensus 310 --l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~ 387 (452)
+..+... |++++.++.+++++++.+.|.+++|+++..+.. ...++.+..+ .+..++.+.|.++ ||.
T Consensus 332 ~~l~~~~~~--g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~L~~~-gi~ 399 (438)
T 1wyu_A 332 MYLAALGPE--GLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-FFNEFALALP--------KDPEAVRRALAER-GFH 399 (438)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-BCSEEEEECS--------SCHHHHHHHHHHT-TCC
T ss_pred HHHHHhCHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCC-eEEEEEEeCC--------CCHHHHHHHHHHC-Cce
Confidence 5555543 788999999999999999999888888766532 2333445442 3567899999775 998
Q ss_pred e--eecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 388 V--PIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 388 v--~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+ +.+..+ .++++|+|++.++|.+|+++++++|++++
T Consensus 400 v~~~~~~~~-----------------~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 400 GATPVPREY-----------------GENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp CCEECCTTS-----------------CSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ecccccccc-----------------CCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 8 333222 24799999999999999999999998864
No 63
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=6.6e-30 Score=255.54 Aligned_cols=352 Identities=13% Similarity=0.076 Sum_probs=246.4
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCCCcEEEecChhH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDVGEISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~i~~t~g~t~ 109 (452)
++.+++|+.+.+. +.|+.+.+++.+.+... . ...+.......++++.++++++ ++ +++|++|+|+|+
T Consensus 43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~-~~~y~~~~g~~~lr~~la~~~~~~~g~~~~-~~~i~~t~g~t~ 116 (437)
T 3g0t_A 43 GTKFCRMEMGVPGLPAPQIGIETEIQKLREG----V-ASIYPNLDGLPELKQEASRFAKLFVNIDIP-ARACVPTVGSMQ 116 (437)
T ss_dssp TCCCEECCCCSCCSCCCHHHHHHHHHHHHHT----G-GGSCCCTTCCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHH
T ss_pred CCCEEeccCcCCCCCCCHHHHHHHHHHHhCC----c-CcCCCCCCChHHHHHHHHHHHHHhhCCCCC-cccEEEeCCHHH
Confidence 5789999888766 45788999998877641 1 0122223334677777777776 43 689999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCC--EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc
Q 012991 110 AAAIVLQQIGRGFTEGRFHRND--TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~--~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 186 (452)
|+.+++.++. ..++|| +|+++.++|++....+. ..|.+++.+++. ++...+ +++|+++++
T Consensus 117 al~~~~~~l~------~~~~gd~~~Vl~~~p~~~~~~~~~~----~~g~~~~~v~~~---~~~~~~d~~~l~~~l~---- 179 (437)
T 3g0t_A 117 GCFVSFLVAN------RTHKNREYGTLFIDPGFNLNKLQCR----ILGQKFESFDLF---EYRGEKLREKLESYLQ---- 179 (437)
T ss_dssp HHHHHHHHHT------TSCTTCSCCEEEEESCCHHHHHHHH----HHTCCCEEEEGG---GGCTTHHHHHHHHHHT----
T ss_pred HHHHHHHHHh------cCCCCCccEEEEeCCCcHhHHHHHH----HcCCEEEEEeec---CCCCccCHHHHHHHHh----
Confidence 9999999872 127899 99999999998766654 459999999652 112224 899999995
Q ss_pred CCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cc--------cccc-cCccEEEEc
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KI--------DVKE-IGADFYVSN 250 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~--------~~~~-~~~d~~~~s 250 (452)
++++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ++ ++.. .+.++++.|
T Consensus 180 -~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 257 (437)
T 3g0t_A 180 -TGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDV-IVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALS 257 (437)
T ss_dssp -TTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEE
T ss_pred -cCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCc-EEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEc
Confidence 467899999999999999997 6668999999999 8999999975322 21 2222 456789999
Q ss_pred CcccCcCCCC--cEEEEEecCccc-cCCCCCceeccCCCC------c-ccccccccccCccccccHHHHHHHHHHhhcCH
Q 012991 251 LHKWFFCPPS--VAFLYCRKSILS-SDMHHPVVSHEFGNG------L-PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGI 320 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~~~~~~~-~~l~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~ 320 (452)
+||+ +|++| +|++++++++++ . + .... ..++.. . ........+.+...+.++..+++....++...
T Consensus 258 ~sK~-~~~~G~r~G~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 333 (437)
T 3g0t_A 258 SSKA-FSYAGQRIGVLMISGKLYERE-Y-PDLE-ESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNF 333 (437)
T ss_dssp STTT-TSCGGGCCEEEEECHHHHHCB-C-GGGH-HHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCH
T ss_pred CccC-CCCccceeEEEEECHHHhhhh-h-hccc-ccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHH
Confidence 9997 55455 899999877765 3 0 0000 000000 0 00111123445555555555555544211127
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcC------CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 321 DGIMQRNHEQALKMARMLANAWGTSLG------SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 321 ~~~~~~~~~~~~~l~~~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
+.++++++++++++.+.|.++ ++.+. .++ ..+.++++.++ +.+..++.+.|.++ ||.+..+..+
T Consensus 334 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~l~~~L~~~-gi~v~~~~~~ 403 (437)
T 3g0t_A 334 RDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPL-ADGFYFTVGYK-------GMDSSKLIEKFVRY-GMCAITLKTT 403 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEEC-CSSSEEEEEET-------TCCHHHHHHHHHHT-TEECEESTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCC-ceeEEEEEecC-------CCCHHHHHHHHHHc-CeEEeecccc
Confidence 889999999999999999988 77766 231 12678888875 45678899999875 9999866554
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.. ..++++|+|++. .+.+|+++++++|++++++
T Consensus 404 ~~--------------~~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 404 GS--------------KRNEAMRICTSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TC--------------CCTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred CC--------------CCCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 21 223789999984 4899999999999998865
No 64
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.97 E-value=3.1e-30 Score=251.90 Aligned_cols=328 Identities=13% Similarity=0.090 Sum_probs=238.0
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
...+++|+.+... +.|+.+.+++.+.+..... ..+. .....++++++++++|+++++++++|+|+|+|+.+++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-----~~y~-~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 102 (367)
T 3euc_A 29 SHGLVKLDAMENPYRLPPALRSELAARLGEVAL-----NRYP-VPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLA 102 (367)
T ss_dssp CTTCEECCSSCCCCCCCHHHHHHHHHHHHHHHT-----TCSC-CCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHH
T ss_pred CCCeeEccCCCCCCCCCHHHHHHHHHHhhhhhh-----hcCC-CCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHH
Confidence 4578999887755 5678899999888764211 1111 1246889999999999943689999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.++ +++||+|+++.++|++....+ ...|.+++.++++ .++.+ +++|++++++ .++++|
T Consensus 103 ~~~--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~----~~~~~d~~~l~~~l~~-----~~~~~v 161 (367)
T 3euc_A 103 LAA--------ARPGAKVMAPVPGFVMYAMSA----QFAGLEFVGVPLR----ADFTLDRGAMLAAMAE-----HQPAIV 161 (367)
T ss_dssp HHT--------CCTTCEEEEEESCSCCSCHHH----HTTTCEEEEEECC----TTSCCCHHHHHHHHHH-----HCCSEE
T ss_pred HHH--------cCCCCEEEEcCCCHHHHHHHH----HHcCCeEEEecCC----CCCCCCHHHHHHHhhc-----cCCCEE
Confidence 976 588999999999999876554 5569999999653 23333 8999999952 278999
Q ss_pred EEeccCCCCccccc---HHHHHHHHHHc--CCCEEEEecccccCCc---cccccccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 195 IIDHITSMPCVVIP---VRKLVKICRDE--GVDQVFVDAAHAMGSI---KIDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 195 ~~~~~~n~tG~~~~---l~~i~~l~~~~--~~~~~ivD~a~~~g~~---~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
++++++||||.++| +++|+++|++| |+ ++|+|++|+.... .......+.++++.|++|+..++.++|++++
T Consensus 162 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~ 240 (367)
T 3euc_A 162 YLAYPNNPTGNLFDAADMEAIVRAAQGSVCRS-LVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAG 240 (367)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHTBTTSCBC-EEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEE
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCc-EEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeee
Confidence 99999999999976 56777789999 99 8999999874321 1122333556889999996222333789988
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
++++++. + .... ...+.+...+.++..+++. .. .++..+++.+++++++.+.|.+++++.+
T Consensus 241 ~~~~~~~-~-~~~~-------------~~~~~~~~~~~a~~~~l~~-~~---~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 301 (367)
T 3euc_A 241 DPQWLEQ-L-DKVR-------------PPYNVNVLTEATALFALEH-VA---VLDEQAAQLRAERSRVAEGMAAHGGVTV 301 (367)
T ss_dssp CHHHHHH-H-GGGC-------------CSSCCCHHHHHHHHHHHTT-HH---HHHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred CHHHHHH-H-HHhC-------------CCCCCCHHHHHHHHHHhcC-HH---HHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 8777664 1 1110 0123444444444445544 22 4678888899999999999998878775
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
.. +. ++++++.++ +..++.+.|.+ +||.+..+..+.. ...+++|++++ +.
T Consensus 302 ~~-~~--~~~~~~~~~---------~~~~l~~~l~~-~gi~v~~~~~~~~--------------~~~~~iRis~~---~~ 351 (367)
T 3euc_A 302 FP-SA--ANFLLARVP---------DAAQTFDRLLA-RKVLIKNVSKMHP--------------LLANCLRVTVS---TP 351 (367)
T ss_dssp CC-CS--SSEEEEECS---------CHHHHHHHHHT-TTEECEECGGGCG--------------GGTTEEEEECC---CH
T ss_pred CC-CC--CeEEEEECC---------CHHHHHHHHHH-CCeEEEECCccCC--------------CCCCEEEEecC---CH
Confidence 43 32 567787774 56788888866 5999976654321 34679999987 89
Q ss_pred HHHHHHHHHHHHHHh
Q 012991 427 EDYEKFRDAVILLVE 441 (452)
Q Consensus 427 ~di~~l~~~l~~~~~ 441 (452)
+|+++++++|+++++
T Consensus 352 ~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 352 EENAQFLEAFAASLQ 366 (367)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998864
No 65
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.97 E-value=1.2e-29 Score=250.05 Aligned_cols=345 Identities=12% Similarity=0.140 Sum_probs=237.3
Q ss_pred HHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C--CCCC
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N--ADDV 98 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~ 98 (452)
+....+++...++.+++|+.+... +.|+.+.+++.+.+... . ..+....+..++++.+++++ | ++ +
T Consensus 19 ~~~~~~~~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~----~--~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-~ 91 (391)
T 3h14_A 19 VMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETD----A--LGYTVALGLPALRQRIARLYGEWYGVDLD-P 91 (391)
T ss_dssp HHHHHHHHHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHCCCCC-G
T ss_pred HHHHHHHHHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcC----C--CCCCCCCChHHHHHHHHHHHHHHhCCCCC-H
Confidence 333344444467889999988766 45677999988876431 1 12222233456666666665 4 43 6
Q ss_pred CcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHH
Q 012991 99 GEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l 177 (452)
++|++|+|+|+|+.+++.++ +++||+|+++.++|++....+ +..|.+++.+++.. +....+ ++++
T Consensus 92 ~~v~~t~g~~~al~~~~~~l--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l 157 (391)
T 3h14_A 92 GRVVITPGSSGGFLLAFTAL--------FDSGDRVGIGAPGYPSYRQIL----RALGLVPVDLPTAP--ENRLQPVPADF 157 (391)
T ss_dssp GGEEEESSHHHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEECCG--GGTTSCCHHHH
T ss_pred HHEEEecChHHHHHHHHHHh--------cCCCCEEEEcCCCCccHHHHH----HHcCCEEEEeecCc--ccCCCCCHHHH
Confidence 89999999999999999987 588999999999999876554 45699999996521 111112 5555
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---cccccc-cCccEEEEc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKE-IGADFYVSN 250 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~-~~~d~~~~s 250 (452)
++. ++++|++++++||||.++| +++|+++|++||+ ++|+|++++.... +..... .+.++++.|
T Consensus 158 ~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s 227 (391)
T 3h14_A 158 AGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGA-SFISDEIYHGIEYEAKAVTALELTDECYVINS 227 (391)
T ss_dssp TTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBSSSCCCCGGGTCSSSEEEEE
T ss_pred Hhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCC-EEEEECcchhcccCCCCcChhhcCCCEEEEEe
Confidence 432 6889999999999999998 7788999999999 8999999875332 222222 245688889
Q ss_pred CcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 251 LHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
++|+ +|++| +|++++++++++. + ... ...+..+++...+.++.++++ .. ..++..+++++
T Consensus 228 ~sK~-~g~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~-~~---~~~~~~~~~~~ 289 (391)
T 3h14_A 228 FSKY-FSMTGWRVGWMVVPEDQVRV-V-ERI-----------AQNMFICAPHASQVAALAALD-CD---AELQANLDVYK 289 (391)
T ss_dssp SSST-TCCTTSCCEEEECCGGGHHH-H-HHH-----------HHHTTCCCCHHHHHHHHHHTT-CH---HHHHHHHHHHH
T ss_pred chhc-cCCccceeEEEEeCHHHHHH-H-HHH-----------HhhhccCCCHHHHHHHHHHhC-Ch---HHHHHHHHHHH
Confidence 9997 45444 7999888877664 1 111 111123444444444444554 11 25678888899
Q ss_pred HHHHHHHHHHHHHcCCCc-CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSL-GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
++++++.+.|.+. ++.. ..+.. +.++++.++. .+.+..++.+.|.+++||.+.++..+..
T Consensus 290 ~~~~~l~~~l~~~-~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~----------- 350 (391)
T 3h14_A 290 ANRKLMLERLPKA-GFTRIAPPDG--AFYVYADVSD-----LTDDSRAFAAEILEKAGVAVTPGLDFDP----------- 350 (391)
T ss_dssp HHHHHHHHHHHHH-TCCCBCCCCB--TTEEEEECTT-----TCSCHHHHHHHHHHHHCEECEEGGGTCT-----------
T ss_pred HHHHHHHHHHHHc-CCCcccCCCe--eEEEEEecCc-----cCCCHHHHHHHHHHHCCEEEcCchhhCC-----------
Confidence 9999999999988 5443 33433 5677777752 1346778888877656999987766532
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...++++|++++. +++++++++++|++++++
T Consensus 351 --~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 351 --ERGAGTLRFSYAR--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp --TTGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 1346799999987 789999999999999875
No 66
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.97 E-value=1.8e-29 Score=256.89 Aligned_cols=388 Identities=14% Similarity=0.077 Sum_probs=248.8
Q ss_pred CCCCCHHHHHhhh----cc---CCCCeEEeccCCCCCCcHHHHHHHHHHHHHH-hcCCchh-hhhhhhHHHHHHHHHHHh
Q 012991 21 TRCISEAEIRDEF----SH---HQHGVARINNGSFGSCPKSVLADQQKWQLKF-LQQPDDF-YFNSLRKGILESRAAVKD 91 (452)
Q Consensus 21 ~~~~~~~~ir~~~----~~---~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~la~ 91 (452)
...++.+++.+++ +. ..++ .|++....+..|..+.. +++... +.+...+ .+....++.+++++++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~---~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~ 143 (504)
T 2okj_A 68 DHPESLEQILVDCRDTLKYGVRTGHP-RFFNQLSTGLDIIGLAG---EWLTSTANTNMFTYEIAPVFVLMEQITLKKMRE 143 (504)
T ss_dssp SSCCCHHHHHHHHHHHHHTSCCTTCT-TEESSSSCCCCHHHHHH---HHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhccCCCCCC-CEEEEccCCCCHHHHHH---HHHHHhhccCCCchhhChHHHHHHHHHHHHHHH
Confidence 3456665555443 21 1233 47887777777765543 222222 2222111 123345567778899999
Q ss_pred HhCCCC-CCcEEEecChhHHHHHHHHHhhcccccCCCCCC-----C-EEEEeCCcchhHHHHHHHHHHhcCc-EEEEEeC
Q 012991 92 LINADD-VGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN-----D-TVLMLHCAFQAVKKSIQAYVTRAGG-SVVEVQL 163 (452)
Q Consensus 92 ~~~~~~-~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g-----~-~Vl~~~~~~~s~~~~~~~~a~~~g~-~v~~~~~ 163 (452)
++|.+. .++++||+|||+|+.+++.++.........++| + +|+++.++|+++..++..+ . .|. +++.++
T Consensus 144 ~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~-g-~g~~~v~~v~- 220 (504)
T 2okj_A 144 IVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL-G-FGTDNVILIK- 220 (504)
T ss_dssp HHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT-T-SCGGGEEEEC-
T ss_pred HhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc-C-CCcccEEEEe-
Confidence 999963 578999999999999999887421100000134 5 7899999999988877553 1 133 788884
Q ss_pred CCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-----c
Q 012991 164 PFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK-----I 237 (452)
Q Consensus 164 ~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~-----~ 237 (452)
.++++.+ +++|+++|++....+.+|++|++++++|++|.+.|+++|+++|++||+ ++|+|++++.+... .
T Consensus 221 ---~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~-~lhvD~a~~~~~~~~~~~~~ 296 (504)
T 2okj_A 221 ---CNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL-WLHVDAAWGGGLLMSRKHRH 296 (504)
T ss_dssp ---BCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTC-EEEEEETTGGGGGGCTTTGG
T ss_pred ---cCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-EEEEehhhhhHHHhCHhhHh
Confidence 4444555 899999986432223479999999999999999999999999999999 69999999887653 2
Q ss_pred cccc-cCccEEEEcCcccCcCCCCcEEEEEecC-cccc--CCCCCceeccCCCCc----cccc---ccccccCccccccH
Q 012991 238 DVKE-IGADFYVSNLHKWFFCPPSVAFLYCRKS-ILSS--DMHHPVVSHEFGNGL----PIES---AWIGTRDYSAQLVI 306 (452)
Q Consensus 238 ~~~~-~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~~~--~l~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~ 306 (452)
.+.. .++|++++++|||+++|.|+|+++++++ ++.. ....++.. +... .... ....+... ...++
T Consensus 297 ~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~rr~-~~l~~ 372 (504)
T 2okj_A 297 KLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLF---QPDKQYDVSYDTGDKAIQCGRHV-DIFKF 372 (504)
T ss_dssp GGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSC---CSCCSSCGGGCCGGGSSCSSCBC-CHHHH
T ss_pred hcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCcccc---CCcccccCcCCcccCCCCCCCCc-cHHHH
Confidence 3332 2689999999999888999999999874 4331 01223321 1110 0000 00011111 12344
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEc-CCcc-ccCC--h------hhHHHH
Q 012991 307 PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGL-PSRL-RVMG--E------DDALRL 376 (452)
Q Consensus 307 ~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--~------~~~~~l 376 (452)
.++++.+... |++.+.++..++++++.+.|.+.+++++..+.....++++|.. +... ...+ . ....++
T Consensus 373 ~a~l~~lg~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l 450 (504)
T 2okj_A 373 WLMWKAKGTV--GFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKI 450 (504)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHH
T ss_pred HHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHH
Confidence 4555555543 7888999999999999999998888887762111245566654 3110 0000 0 013578
Q ss_pred HHHHhhhcce-EeeecccCCCCCCCCCCCCCCCCCCccceEEeccc-ccCCHHHHHHHHHHHHHHHhc
Q 012991 377 RGHLRVRFGV-EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ-VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 377 ~~~L~~~~gI-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.|.++ |+ .+..... ....+++|+++. .++|++||++++++|+++.++
T Consensus 451 ~~~L~~~-G~~~~~~~~~----------------~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 451 KALMMES-GTTMVGYQPQ----------------GDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp HHHHHHH-TSCEEEEEEE----------------TTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC-CcEEEEeeEE----------------CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888776 75 4432211 112368999996 889999999999999998754
No 67
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.97 E-value=3.5e-30 Score=252.80 Aligned_cols=340 Identities=11% Similarity=0.001 Sum_probs=241.0
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC--CCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN--ADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~i~~t~g~t~a~~~ 113 (452)
++.++.|+.+... +.|+.+.+++.+.+.. ....+.....+..+++.+.+++.+| ++ ++++++|+|+|+|+.+
T Consensus 23 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~y~~~~~~~~~~l~~~l~~~~g~~~~-~~~v~~~~g~~~a~~~ 97 (383)
T 3kax_A 23 NEELIHAWIADMDFEVPQPIQTALKKRIEH----PIFGYTLPPENIGDIICNWTKKQYNWDIQ-KEWIVFSAGIVPALST 97 (383)
T ss_dssp SSCCEECCCSSCSSCCCHHHHHHHHHHHHS----CCCCCCCCCTTHHHHHHHHHHHHHCCCCC-GGGEEEESCHHHHHHH
T ss_pred CCCeeecccccCCCCCCHHHHHHHHHHHhc----CCCCCCCCCHHHHHHHHHHHHHHhCCCCC-hhhEEEcCCHHHHHHH
Confidence 4678999877655 5678899999887753 1112222256778889999999998 43 6899999999999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~ 192 (452)
++.++ +++||+|+++.++|++....+ ...|.+++.++.... +....+ +++|++++ .++++
T Consensus 98 ~~~~l--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~l------~~~~~ 158 (383)
T 3kax_A 98 SIQAF--------TKENESVLVQPPIYPPFFEMV----TTNNRQLCVSPLQKQ-NDTYAIDFEHLEKQF------QQGVK 158 (383)
T ss_dssp HHHHH--------CCTTCEEEECSSCCHHHHHHH----HHTTCEEEECCCEEE-TTEEECCHHHHHHHH------TTTCC
T ss_pred HHHHh--------CCCCCEEEEcCCCcHHHHHHH----HHcCCEEEeccceec-CCcEEEcHHHHHHHh------CcCCe
Confidence 99987 588999999999999876554 456999998854210 111123 89999999 57899
Q ss_pred EEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCc----ccccccc-----CccEEEEcCcccCcCCCC
Q 012991 193 LAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEI-----GADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~-----~~d~~~~s~~K~l~g~~G 260 (452)
+|++++++||||.++|.+ +|+++|++||+ ++|+|++|+.... ..++... +.++++.|++|+ +|++|
T Consensus 159 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G 236 (383)
T 3kax_A 159 LMLLCSPHNPIGRVWKKEELTKLGSLCTKYNV-IVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKT-FNIAG 236 (383)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHH-HTCGG
T ss_pred EEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCC-EEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhh-ccCcc
Confidence 999999999999998855 56666999999 8999999876332 2222222 445889999997 45444
Q ss_pred --cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 261 --VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 261 --~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
+|++++ ++++.+. + .... .....++++...+.++.++++...+ ..+.++++++++++++.+.
T Consensus 237 ~r~G~~~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~ 301 (383)
T 3kax_A 237 LQASIIIIPNEKLRQA-F-TSIQ----------YRQGFHGLNIFAYTAMQSAYTECND---WLNEIRFYIEDNAKFACEY 301 (383)
T ss_dssp GCCEEEECCCHHHHHH-H-HHHH----------HHTTCCCCCHHHHHHHHHHTTTCHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhheEEEeCCHHHHHH-H-HHHH----------hhcccCCCCHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 788887 4555553 1 1110 0000124444444444444443222 3677888899999999999
Q ss_pred HHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 338 LAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 338 L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
|.+ ++++.+..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.. ...+++
T Consensus 302 l~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------~~~~~i 360 (383)
T 3kax_A 302 IKDHIPTLSVMKPEG--SFLLWIDCSA-----LNLSQDERTKLLEEKGKIIVEPGEKYGL--------------GGEEHI 360 (383)
T ss_dssp HHHHCTTCEECCCSB--SSEEEEECGG-----GCCCHHHHHHHHHHTSCEECEESGGGCT--------------TCTTEE
T ss_pred HHhhCCCceEecCCc--eEEEEEEccc-----cCCCHHHHHHHHHhhCCEEeECchhhcC--------------CCCCeE
Confidence 988 57887766554 5566677752 1347788999997556999987665432 235799
Q ss_pred EecccccCCHHHHHHHHHHHHHHH
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~ 440 (452)
|++++. +++++++++++|++++
T Consensus 361 Ri~~~~--~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 361 GINIGC--PRSVLEEILNRLRHTF 382 (383)
T ss_dssp EEECSS--CHHHHHHHHHHHHHHH
T ss_pred EEEEcC--CHHHHHHHHHHHHHHh
Confidence 999984 8999999999999876
No 68
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.97 E-value=2e-30 Score=256.97 Aligned_cols=343 Identities=13% Similarity=0.119 Sum_probs=237.4
Q ss_pred hhccCCCCeEEeccCCC---C-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh------CCCCCCcE
Q 012991 32 EFSHHQHGVARINNGSF---G-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI------NADDVGEI 101 (452)
Q Consensus 32 ~~~~~~~~~~~l~~~~~---~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~~i 101 (452)
.+...++.+++|+.+.+ . +.|+.+.+++.+.+... .. .|.......++++.+++++ +++ ++++
T Consensus 32 ~~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~--~y~~~~g~~~l~~~la~~l~~~~g~~~~-~~~v 104 (406)
T 1xi9_A 32 ELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEG----HN--YYGDSEGLPELRKAIVEREKRKNGVDIT-PDDV 104 (406)
T ss_dssp HHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTT----CC--SCCCTTCCHHHHHHHHHHHHHHHCCCCC-GGGE
T ss_pred HHHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcC----CC--CCCCCCCcHHHHHHHHHHHHHhcCCCCC-HHHE
Confidence 33335678999998877 3 45677999988876431 11 1222223456666666666 343 6899
Q ss_pred EEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHH
Q 012991 102 SLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKG 180 (452)
Q Consensus 102 ~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~ 180 (452)
++|+|+|+|+.+++.++ +++||+|++++++|++....+ ...|.+++.++.+. ++...+ +++|++.
T Consensus 105 ~~t~g~~~al~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~ 170 (406)
T 1xi9_A 105 RVTAAVTEALQLIFGAL--------LDPGDEILVPGPSYPPYTGLV----KFYGGKPVEYRTIE--EEDWQPDIDDIRKK 170 (406)
T ss_dssp EEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEEEEG--GGTSEECHHHHHHH
T ss_pred EEcCChHHHHHHHHHHh--------CCCCCEEEEcCCCCccHHHHH----HHcCCEEEEeecCC--CcCCcCCHHHHHHh
Confidence 99999999999999987 478999999999999876554 45699999986521 111123 8999999
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---cccccc--cCc-cEEEEcC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKE--IGA-DFYVSNL 251 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~--~~~-d~~~~s~ 251 (452)
+ .+++++|++++++||||.++| +++|+++|++||+ ++|+|++++.+.. ...+.. .+. |+++.|+
T Consensus 171 l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 243 (406)
T 1xi9_A 171 I------TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEI-PVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGL 243 (406)
T ss_dssp C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-CEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEES
T ss_pred h------CcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCC-EEEEEcCccccccCCCCCCHHHcCCCceEEEEecc
Confidence 8 467999999999999999987 8899999999999 6999999876442 112222 245 7899999
Q ss_pred cccCcCCCC--cEEEE--Eec----CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHH
Q 012991 252 HKWFFCPPS--VAFLY--CRK----SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGI 323 (452)
Q Consensus 252 ~K~l~g~~G--~G~l~--~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~ 323 (452)
||+ +|++| +|+++ .++ ++++. + ... .... .+.+...+.++.++++... ..++.+
T Consensus 244 sK~-~~~~G~r~G~~~~~~~~~~~~~l~~~-l-~~~-----------~~~~-~~~~~~~~~a~~~~l~~~~---~~~~~~ 305 (406)
T 1xi9_A 244 SKV-YFATGWRLGYMYFVDPENKLSEVREA-I-DRL-----------ARIR-LCPNTPAQFAAIAGLTGPM---DYLKEY 305 (406)
T ss_dssp TTT-TCCGGGCCEEEEEECTTCTTHHHHHH-H-HHH-----------HHHT-CCSCSHHHHHHHHHHHSCC---HHHHHH
T ss_pred ccc-cCCCccEEEEEEEecCchhHHHHHHH-H-HHH-----------HHhh-cCCCHHHHHHHHHHHhCCc---HHHHHH
Confidence 997 55566 79988 666 55543 1 111 0000 2333334444444443211 136778
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA 403 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~ 403 (452)
+++++++++++.+.|.+++++.+..+.. +.++++.++.. .+.+..++.+.|.+++||.+..+..+..
T Consensus 306 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~l~~~l~~~~gi~v~~g~~f~~------- 372 (406)
T 1xi9_A 306 MKKLKERRDYIYKRLNEIPGISTTKPQG--AFYIFPKIEVG----PWKNDKEFVLDVLHNAHVLFVHGSGFGE------- 372 (406)
T ss_dssp HHHHHHHHHHHHHHHHTSTTEECCCCCB--SSEECCEECSC----SCSSHHHHHHHHHHHHCEECEEGGGGCG-------
T ss_pred HHHHHHHHHHHHHHHHhCCCCeeecCCe--eEEEEEecCcc----CCCCHHHHHHHHHHhCCEEEeCchhcCC-------
Confidence 8889999999999998877777655443 45555566510 0246678888886345999977655421
Q ss_pred CCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 404 GARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 404 ~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++ ++++++++++++|++++++
T Consensus 373 -------~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 373 -------YGAGHFRAVFL--PPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp -------GGTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 23579999998 6999999999999998864
No 69
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.97 E-value=2.1e-29 Score=254.06 Aligned_cols=330 Identities=13% Similarity=0.078 Sum_probs=230.8
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCC--------CcEEEecChhHHHHHHHHHhhcccccC-----------CCCCCCEEEEe
Q 012991 76 NSLRKGILESRAAVKDLINADDV--------GEISLVDNATTAAAIVLQQIGRGFTEG-----------RFHRNDTVLML 136 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~--------~~i~~t~g~t~a~~~~~~~l~~~~~~~-----------~~~~g~~Vl~~ 136 (452)
....++.+++.+++++++|.++. ...+||+|||+|+..++.+....+... ...+++.|+++
T Consensus 109 p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s 188 (475)
T 3k40_A 109 PACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCS 188 (475)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEEC
Confidence 45567788889999999999721 268999999999988888764322100 01134689999
Q ss_pred CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHH
Q 012991 137 HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKI 215 (452)
Q Consensus 137 ~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l 215 (452)
..+|.|+.+++.. .|.+++.+ +.++++ + +++|+++|++....+..|.+|++++++|++|.+.|+++|+++
T Consensus 189 ~~~H~s~~~~~~~----~g~~~~~v----~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~l 259 (475)
T 3k40_A 189 DQAHSSVERAGLL----GGVKLRSV----QSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPV 259 (475)
T ss_dssp TTSCHHHHHHHHH----HTCEEEEE----CCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred CCchHHHHHHHHH----cCCceEEE----ECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHH
Confidence 9999998877654 59999999 445566 7 999999997543333458899999999999999999999999
Q ss_pred HHHcCCCEEEEecccccCCcccc-c----cc-cCccEEEEcCcccCcCCCCcEEEEEecCcc-cc--CCCCCceeccCCC
Q 012991 216 CRDEGVDQVFVDAAHAMGSIKID-V----KE-IGADFYVSNLHKWFFCPPSVAFLYCRKSIL-SS--DMHHPVVSHEFGN 286 (452)
Q Consensus 216 ~~~~~~~~~ivD~a~~~g~~~~~-~----~~-~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~-~~--~l~~~~~~~~~~~ 286 (452)
|++||+ ++|+|+|++.+....+ . .. ..+|++++++|||+++|.|+|++++++... .. ....+++......
T Consensus 260 a~~~~~-~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~ 338 (475)
T 3k40_A 260 GNKHNL-WIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQG 338 (475)
T ss_dssp HHHTTC-EEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------------
T ss_pred HHHhCC-eEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCC
Confidence 999999 6999999987654221 1 11 146999999999999999999999986533 22 0112222111000
Q ss_pred Ccc--cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCc
Q 012991 287 GLP--IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSR 364 (452)
Q Consensus 287 ~~~--~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (452)
..+ ......++.. ...+.++++++.+... |++++.++..++++++.+.|.+++++++..++. .++++|.++.
T Consensus 339 ~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~--g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~--~~iv~f~~~~- 412 (475)
T 3k40_A 339 SAPDYRHWQIPLGRR-FRALKLWFVLRLYGVE--NLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN--MGLVCFRLKG- 412 (475)
T ss_dssp ----------CCCGG-GTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCB--TTEEEEEESS-
T ss_pred CCCCcccccccCCCc-ccHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc--eEEEEEEeCC-
Confidence 000 0000011111 2345566777776653 899999999999999999999998998877654 6788898752
Q ss_pred cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHHHHhc
Q 012991 365 LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 365 ~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~ 442 (452)
......++.+.|.++.++++..... ....++|+++..+ +|++||++++++|+++.++
T Consensus 413 ----~~~~~~~l~~~L~~~g~~~~~~~~~-----------------~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 413 ----SNERNEALLKRINGRGHIHLVPAKI-----------------KDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp ----CHHHHHHHHHHHHHHTSCBCEEEEE-----------------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHhCCcEEEEeeEE-----------------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2334678999998763334432221 2246999998644 6899999999999998764
No 70
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.97 E-value=2.7e-29 Score=248.72 Aligned_cols=349 Identities=15% Similarity=0.134 Sum_probs=239.5
Q ss_pred CCCeEEeccCCCC---CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChh
Q 012991 37 QHGVARINNGSFG---SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNAT 108 (452)
Q Consensus 37 ~~~~~~l~~~~~~---~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t 108 (452)
++.+++|+.+.+. ..++.+.+++.+.+... +.... |.......++++.+++++ |.+ ++++|++|+|+|
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~---~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t 108 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKE---PKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGT 108 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHC---GGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhc---ccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHH
Confidence 3478899776543 25677888888877542 11112 333344677888888887 832 268999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+|+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+ .++ + +++|++++++....
T Consensus 109 ~a~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~----~~~-~d~~~l~~~l~~~~~~ 171 (407)
T 2zc0_A 109 GALDLLGRVL--------IDPGDVVITENPSYINTLLAF----EQLGAKIEGVPVD----NDG-MRVDLLEEKIKELKAK 171 (407)
T ss_dssp HHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HTTTCEEEEEEEE----TTE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--------cCCCCEEEEeCCChHHHHHHH----HHcCCEEEEcccC----CCC-CCHHHHHHHHHhhhcc
Confidence 9999999987 478999999999999875554 5569999998652 223 4 88899888511000
Q ss_pred CCceEEE-EEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCcc----cccccc---CccEEEEcCcccCc
Q 012991 188 GKMIRLA-IIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSIK----IDVKEI---GADFYVSNLHKWFF 256 (452)
Q Consensus 188 ~~~~~lv-~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~~---~~d~~~~s~~K~l~ 256 (452)
..++++| ++++++||||.++|.+ +|+++|++||+ ++|+|++++.+... .++..+ +.++++.|++|+++
T Consensus 172 ~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 250 (407)
T 2zc0_A 172 GQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDL-LIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG 250 (407)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC
T ss_pred cCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC
Confidence 2478887 5789999999999986 89999999999 79999999865431 122222 34578889999854
Q ss_pred CCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHH
Q 012991 257 CPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFE-GGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 257 g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~g~~~~~~~~~~~~~~l~ 335 (452)
++..+|++++++++++. + .... . . +....+...+.++..+++... .+ ..++.++++++++++++.
T Consensus 251 ~G~r~G~~~~~~~~~~~-~-~~~~-~--~--------~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~ 316 (407)
T 2zc0_A 251 TGFRIGWIIAEGEILKK-V-LMQK-Q--P--------IDFCAPAISQYIALEYLKRGY-FEKYHLEGALLGYKEKRDIML 316 (407)
T ss_dssp TTSCCEEEECCHHHHHH-H-HHHH-T--T--------TTSSSCHHHHHHHHHHHHTTH-HHHHTTTTHHHHHHHHHHHHH
T ss_pred CCcceEEEecCHHHHHH-H-HHHH-H--h--------hcCCCCHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHH
Confidence 21127999998776654 1 1110 0 0 001122333333333443220 01 256777888889999999
Q ss_pred HHHHHH-cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 336 RMLANA-WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 336 ~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
+.|.+. +++.+..+.. +.++++.++ .+.+..++.+.|.+++||.+..+..+... ...++
T Consensus 317 ~~L~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~l~~~l~~~~gi~v~~g~~~~~~------------~~~~~ 376 (407)
T 2zc0_A 317 KALENHLPNAEFTKPIA--GMFVMFFLP------EGADGISFANELMEREGVVVVPGKPFYTD------------ESGKN 376 (407)
T ss_dssp HHHHHHCTTSCBCCCSB--SSEEEEECS------TTCCHHHHHHHHHHHTCEECBCSGGGCSS------------SCCTT
T ss_pred HHHHHhCCCCEEecCCC--cEEEEEEcC------CCCCHHHHHHHHHHhCCeEEECchhccCC------------CCCCC
Confidence 999874 5676655543 678888886 34567789999977669999766544221 12357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++|++++.. +++|+++++++|++++++
T Consensus 377 ~iRis~~~~-~~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 377 AIRLNFSRP-SKEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp EEEEECSSS-CTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-CHHHHHHHHHHHHHHHHH
Confidence 999999876 899999999999998864
No 71
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.97 E-value=4e-30 Score=253.93 Aligned_cols=350 Identities=14% Similarity=0.092 Sum_probs=242.8
Q ss_pred HHhhhcc-CCCCeEEeccCCCCC---CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEe
Q 012991 29 IRDEFSH-HQHGVARINNGSFGS---CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLV 104 (452)
Q Consensus 29 ir~~~~~-~~~~~~~l~~~~~~~---~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t 104 (452)
+++.+.. .++.+++|+.+.+.+ .++.+.+++.+.+.... .....|.......++++.+++++|++ +++|++|
T Consensus 22 ~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~---~~~~~y~~~~~~~~l~~~la~~~g~~-~~~v~~~ 97 (397)
T 2zyj_A 22 IRELLKLTQRPGILSFAGGLPAPELFPKEEAAEAAARILREKG---EVALQYSPTEGYAPLRAFVAEWIGVR-PEEVLIT 97 (397)
T ss_dssp HHHHHHHHTSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHH---HHHTSCCCTTCCHHHHHHHHHHHTSC-GGGEEEE
T ss_pred HHHHHhhccCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcc---hhhhCCCCCCCCHHHHHHHHHHhCCC-hhhEEEe
Confidence 4444432 346789998776542 56778898888775421 11122333345788999999999975 6899999
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
+|+++|+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+ .++ + +++|++++++
T Consensus 98 ~g~~~al~~~~~~~--------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~----~~~-~d~~~l~~~l~~ 160 (397)
T 2zyj_A 98 TGSQQALDLVGKVF--------LDEGSPVLLEAPSYMGAIQAF----RLQGPRFLTVPAG----EEG-PDLDALEEVLKR 160 (397)
T ss_dssp SHHHHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEE----TTE-ECHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh--------CCCCCEEEEeCCCcHHHHHHH----HHcCCEEEecCcC----CCC-CCHHHHHHHHhh
Confidence 99999999999987 478999999999999876554 4569999988652 223 4 8999999853
Q ss_pred cccCCCceEEE-EEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCc----cccccccC------ccEEEE
Q 012991 184 GKKDGKMIRLA-IIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEIG------ADFYVS 249 (452)
Q Consensus 184 ~~~~~~~~~lv-~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~~------~d~~~~ 249 (452)
.++++| ++++++||||.++|.+ +|+++|++||+ ++|+|++++.+.. +.++..++ .++++.
T Consensus 161 -----~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~ 234 (397)
T 2zyj_A 161 -----ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGL-VVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLG 234 (397)
T ss_dssp -----CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTC-CEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEE
T ss_pred -----cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC-EEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEe
Confidence 367887 5799999999999865 88999999999 6999999986432 22333332 338889
Q ss_pred cCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 250 NLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 250 s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
|+||+++++.++|++++++++++. + .... ..+..+.+...+.++.++++... + ...+.+++++++
T Consensus 235 s~sK~~~~G~r~G~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~~a~~~~l~~~~-~-~~~~~~~~~~~~ 299 (397)
T 2zyj_A 235 SFSKVLSPGLRVAFAVAHPEALQK-L-VQAK-----------QGADLHTPMLNQMLVHELLKEGF-S-ERLERVRRVYRE 299 (397)
T ss_dssp ESTTTTCGGGCCEEEECCHHHHHH-H-HHHH-----------HHHHSSCCHHHHHHHHHHHTTTH-H-HHHHHHHHHHHH
T ss_pred cccccccccceeEEEecCHHHHHH-H-HHHH-----------HhhcCCCCHHHHHHHHHHHHhCC-H-HHHHHHHHHHHH
Confidence 999985522337999998777664 1 1110 00001123333333333332211 0 136677888888
Q ss_pred HHHHHHHHHHHH-c-CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANA-W-GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 330 ~~~~l~~~L~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
+++++.+.|.+. + ++.+..+.. +.++++.++ .+.+..++.+.|.++ ||.+..+..+...
T Consensus 300 ~~~~l~~~L~~~~~~g~~~~~~~~--g~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~g~~f~~~---------- 360 (397)
T 2zyj_A 300 KAQAMLHALDREVPKEVRYTRPKG--GMFVWMELP------KGLSAEGLFRRALEE-NVAFVPGGPFFAN---------- 360 (397)
T ss_dssp HHHHHHHHHHHHSCTTSEECCCSB--SSEEEEECS------TTCCHHHHHHHHHHT-TEEEEESGGGCTT----------
T ss_pred HHHHHHHHHHHHCCCCeEEccCCc--cEEEEEEcC------CCCCHHHHHHHHHHC-CCEEechHHhcCC----------
Confidence 999999999874 5 576655543 678888886 245677899999876 9999776544211
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...++++|++++.. +++++++++++|++++++
T Consensus 361 --~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 361 --GGGENTLRLSYATL-DREGIAEGVRRLGRALKG 392 (397)
T ss_dssp --SCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 12357999999875 899999999999998864
No 72
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.97 E-value=4.1e-30 Score=254.53 Aligned_cols=342 Identities=12% Similarity=0.099 Sum_probs=242.7
Q ss_pred CeEEeccCCCC--CCcHHHHHHHHHHHHHHhcCCchhh--hhhhhHHHHHHHHHHHhHhCCCC-C-CcEEEecChhHHHH
Q 012991 39 GVARINNGSFG--SCPKSVLADQQKWQLKFLQQPDDFY--FNSLRKGILESRAAVKDLINADD-V-GEISLVDNATTAAA 112 (452)
Q Consensus 39 ~~~~l~~~~~~--~~p~~v~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~-~-~~i~~t~g~t~a~~ 112 (452)
.+++|+.+.+. +.|+.|.+++.+.+.... ...| .....+..+++.+.+++++|.+- + +++++|+|+++|+.
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~---~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~ 116 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGG---VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 116 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTH---HHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCC---CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHH
Confidence 47899876655 566779999988876421 0011 12345677888888999888741 2 69999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC--CChHHH-HHHHHHHHhccccCCC
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL--ASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~--~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
.++.++ +++||+|+++.++|.+....+ +..|.+++.++..... ++.+.+ +++|+++++ +
T Consensus 117 ~~~~~l--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~------~ 178 (407)
T 3nra_A 117 LAVAAT--------VARGDKVAIVQPDYFANRKLV----EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK------A 178 (407)
T ss_dssp HHHHTT--------CCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH------T
T ss_pred HHHHHh--------CCCCCEEEEcCCcccchHHHH----HHcCCEEEEeecccccccCcCCCcCHHHHHHHHh------h
Confidence 999876 588999999999999876554 4569999999752110 122333 899999994 4
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccccc-----ccCccEEEEcCcccCcC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVK-----EIGADFYVSNLHKWFFC 257 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~-----~~~~d~~~~s~~K~l~g 257 (452)
++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ...+. ..+.++++.|++|+ +|
T Consensus 179 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~-~g 256 (407)
T 3nra_A 179 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGA-TVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKT-ES 256 (407)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSST-TC
T ss_pred CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccc-cC
Confidence 7889999999999999999 8899999999999 7999999986332 11211 23456899999997 45
Q ss_pred CCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 258 ~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
++| +|+++.++++++. + ... ...+..+++...+.++..+++.. .+.++..+++.+++++++.
T Consensus 257 ~~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~ 320 (407)
T 3nra_A 257 LSGYRLGVAFGSRAIIAR-M-EKL-----------QAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIRDELL 320 (407)
T ss_dssp CGGGCCEEEEECHHHHHH-H-HHH-----------HHHHTSSSCHHHHGGGGGTTCCC---TTHHHHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEEcCHHHHHH-H-HHH-----------HhhhccCCChHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHH
Confidence 444 7999888777664 1 111 01111222222333333333211 1135667788889999999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.+++++.+..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.. ...++
T Consensus 321 ~~L~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------~~~~~ 379 (407)
T 3nra_A 321 HVLRGCEGVFARTPQA--GSYLFPRLPK-----LAVAPAEFVKILRLQAGVVVTPGTEFSP--------------HTADS 379 (407)
T ss_dssp HHHHTSTTCBCCCCSB--SSEECCBCCC-----BSSCHHHHHHHHHHHHCEECEEGGGTCT--------------TCTTB
T ss_pred HHHhcCCCceeccCCe--eEEEEEeCCC-----CCCCHHHHHHHHHHhCCEEEeCchhhCC--------------CCCCE
Confidence 9998887887766554 5677777752 1456778999987656999987766532 34679
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|++++. ++++|++++++|++++++
T Consensus 380 iRis~~~--~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 380 VRLNFSQ--DHEAAVAAARRIVTLVER 404 (407)
T ss_dssp EEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 9999985 899999999999998865
No 73
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.97 E-value=1.3e-28 Score=250.40 Aligned_cols=390 Identities=14% Similarity=0.050 Sum_probs=252.3
Q ss_pred CCCCCCHHHHHhhhcc-------CCCCeEEeccCCCCCCcHHH-HHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHH
Q 012991 20 LTRCISEAEIRDEFSH-------HQHGVARINNGSFGSCPKSV-LADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVK 90 (452)
Q Consensus 20 ~~~~~~~~~ir~~~~~-------~~~~~~~l~~~~~~~~p~~v-~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la 90 (452)
|..+.+++++.+++.. ..++. |++.-..+..+..+ .+.+...+ +.+...+ .+....++.+++.++++
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~~p~-f~~~~~~~~~~~~~~~e~l~~~~---~~~~~~~~~~p~~~~le~~~~~~l~ 145 (511)
T 3vp6_A 70 SDHPESLEQILVDCRDTLKYGVRTGHPR-FFNQLSTGLDIIGLAGEWLTSTA---NTNMFTYEIAPVFVLMEQITLKKMR 145 (511)
T ss_dssp CSSCCCHHHHHHHHHHHHHTSCCTTSTT-EESSSSCCCCHHHHHHHHHHHHH---CCCSSCTTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCCC-ceEeecCCCcHHHHHHHHHHHHh---ccCCCCcccCchHHHHHHHHHHHHH
Confidence 4445677666654421 12222 55544444333333 33333332 2222222 22455667788999999
Q ss_pred hHhCCCC-CCcEEEecChhHHHHHHHHHhhcccc----c-C-CCCCCCEEEEeCCcchhHHHHHHHHHHhcCc---EEEE
Q 012991 91 DLINADD-VGEISLVDNATTAAAIVLQQIGRGFT----E-G-RFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG---SVVE 160 (452)
Q Consensus 91 ~~~~~~~-~~~i~~t~g~t~a~~~~~~~l~~~~~----~-~-~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~---~v~~ 160 (452)
+++|.+. .+.++||+|||+|+..++.++...+. + . ...+++.|+++..+|.++..++.. .|. +++.
T Consensus 146 ~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~----~g~g~~~~~~ 221 (511)
T 3vp6_A 146 EIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA----LGFGTDNVIL 221 (511)
T ss_dssp HHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHH----TTSCGGGEEE
T ss_pred HHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHH----cCCCCCcEEE
Confidence 9999963 36899999999999998887753210 0 0 002567899999999998777654 466 8888
Q ss_pred EeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc--
Q 012991 161 VQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI-- 237 (452)
Q Consensus 161 ~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~-- 237 (452)
+ +.+.++.+ +++|+++|++....+.+|++|++++++|++|.+.|+++|+++|++||+ ++|+|++++.+....
T Consensus 222 v----~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~-~lhvD~a~~~~~~~~~~ 296 (511)
T 3vp6_A 222 I----KCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL-WLHVDAAWGGGLLMSRK 296 (511)
T ss_dssp E----CBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTC-EEEEEETTGGGGGGCTT
T ss_pred e----ecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCC-EEEEEccchhhHhhChh
Confidence 8 44445555 899999997543334459999999999999999999999999999999 699999999877632
Q ss_pred ---ccc-ccCccEEEEcCcccCcCCCCcEEEEEecCc-ccc--CCCCCceeccCCC-Ccccc---cccccccCccccccH
Q 012991 238 ---DVK-EIGADFYVSNLHKWFFCPPSVAFLYCRKSI-LSS--DMHHPVVSHEFGN-GLPIE---SAWIGTRDYSAQLVI 306 (452)
Q Consensus 238 ---~~~-~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~-~~~--~l~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~ 306 (452)
.+. ..++|++++++|||+++|.|+|+++++++. +.. .....+....... ..... .....+.. ...+++
T Consensus 297 ~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~-~~al~~ 375 (511)
T 3vp6_A 297 HRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRH-VDIFKF 375 (511)
T ss_dssp TGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCC-CCHHHH
T ss_pred hhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCc-hHHHHH
Confidence 122 125799999999999999999999997653 332 0112221100000 00000 00011111 244556
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEc-CCccccC--C-------hhhHHHH
Q 012991 307 PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGL-PSRLRVM--G-------EDDALRL 376 (452)
Q Consensus 307 ~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-------~~~~~~l 376 (452)
+.+++.+... |++++.++..++++++.+.|.+.+++++..+.....++++|.+ |...... + .....++
T Consensus 376 ~~al~~~g~~--gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l 453 (511)
T 3vp6_A 376 WLMWKAKGTV--GFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKI 453 (511)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHH
Confidence 6777766643 8899999999999999999998889988763111255666654 3111000 0 0113468
Q ss_pred HHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHHh
Q 012991 377 RGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.|.++ |+.+... .+. ....+++|+++ +..++.+||++++++|+++.+
T Consensus 454 ~~~L~~~-G~~~~~~-~~~--------------~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 454 KALMMES-GTTMVGY-QPQ--------------GDKANFFRMVISNPAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp HHHHHHH-TSCEEEE-EEE--------------TTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhc-CCEEEEE-EEe--------------CCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 8888776 7654331 111 12345899999 788999999999999998764
No 74
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=249.00 Aligned_cols=330 Identities=12% Similarity=0.041 Sum_probs=233.0
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCC---------CcEEEecChhHHHHHHHHHhhccccc-----------CCCCCCCEEEE
Q 012991 76 NSLRKGILESRAAVKDLINADDV---------GEISLVDNATTAAAIVLQQIGRGFTE-----------GRFHRNDTVLM 135 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~---------~~i~~t~g~t~a~~~~~~~l~~~~~~-----------~~~~~g~~Vl~ 135 (452)
....++.+++.+++++++|.++. ...++|+|||+|+..++.+....+.. ....+++.|++
T Consensus 114 p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~ 193 (481)
T 4e1o_A 114 PACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYA 193 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEE
Confidence 45567788889999999999632 26799999999999988876432110 00125679999
Q ss_pred eCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHH
Q 012991 136 LHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVK 214 (452)
Q Consensus 136 ~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~ 214 (452)
+..+|.|+.++... .|.+++.++ .++++.+ +++|+++|++....+..+.+|++++++|++|.+.|+++|++
T Consensus 194 s~~~H~s~~~~~~~----~g~~~~~v~----~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~ 265 (481)
T 4e1o_A 194 SDQAHSSVEKAGLI----SLVKMKFLP----VDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265 (481)
T ss_dssp ETTSCHHHHHHHHH----HTCEEEEEC----CCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred cCcchHHHHHHHHh----CCCceEEEE----cCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHH
Confidence 99999998777643 589999994 4445556 89999999754333345889999999999999999999999
Q ss_pred HHHHcCCCEEEEecccccCCcccc-cc--cc---CccEEEEcCcccCcCCCCcEEEEEecCcc-cc--CCCCCceeccCC
Q 012991 215 ICRDEGVDQVFVDAAHAMGSIKID-VK--EI---GADFYVSNLHKWFFCPPSVAFLYCRKSIL-SS--DMHHPVVSHEFG 285 (452)
Q Consensus 215 l~~~~~~~~~ivD~a~~~g~~~~~-~~--~~---~~d~~~~s~~K~l~g~~G~G~l~~~~~~~-~~--~l~~~~~~~~~~ 285 (452)
+|++||+ ++|+|+|++.+....+ .. .. .+|++++++|||+++|.|+|++++++... .. ....++......
T Consensus 266 la~~~~~-~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~ 344 (481)
T 4e1o_A 266 ICAREGL-WLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS 344 (481)
T ss_dssp HHHHHTC-EEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT
T ss_pred HHHHcCC-eEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc
Confidence 9999999 6999999987654221 11 11 35999999999999999999999876533 21 011222211100
Q ss_pred CCc--ccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCC
Q 012991 286 NGL--PIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPS 363 (452)
Q Consensus 286 ~~~--~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (452)
... .......++.. ...+.++++++.+... |++++.++..++++++.+.|.+++++++..++. .++++|.++.
T Consensus 345 ~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~--g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~--~~~v~f~~~~ 419 (481)
T 4e1o_A 345 GVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVK--NLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRH--LGLVVFRLKG 419 (481)
T ss_dssp TTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCC--SSEEEEEESS
T ss_pred CCCCCcccccccCCCC-ccHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc--eeEEEEEeCC
Confidence 000 00001111112 2345566677766643 889999999999999999999988998876654 6788898852
Q ss_pred ccccCChhhHHHHHHHHhhhcce-EeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHHHHh
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGV-EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~ 441 (452)
.+....++.+.|.++ |+ ++..... ....++|+++..+ +|++||++++++|+++.+
T Consensus 420 -----~~~~~~~l~~~L~~~-g~~~~~~~~~-----------------~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 476 (481)
T 4e1o_A 420 -----PNSLTENVLKEIAKA-GRLFLIPATI-----------------QDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT 476 (481)
T ss_dssp -----CHHHHHHHHHHHHHH-CSSBCEEEEE-----------------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHhC-CeEEEEeeEE-----------------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 233457899999876 64 4432221 2246899998755 589999999999999876
Q ss_pred c
Q 012991 442 E 442 (452)
Q Consensus 442 ~ 442 (452)
+
T Consensus 477 ~ 477 (481)
T 4e1o_A 477 L 477 (481)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=1e-29 Score=247.62 Aligned_cols=324 Identities=13% Similarity=0.073 Sum_probs=230.8
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
+..+++|+.+..+ +.|+.+.+++.+.+... +.....+. .....++++++++++|++ +++|++|+|+|+|+.+++
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~~y~-~~~~~~lr~~la~~~g~~-~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGPD---GAALRIYP-SASSQKLREVAGELYGFD-PSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTTT---CGGGGSCC-CSSCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHH
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhcc---cchhhcCC-CCchHHHHHHHHHHhCcC-cceEEEcCCHHHHHHHHH
Confidence 4568999888765 56788999998876531 01111121 122478999999999985 789999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
.++ +++||+|++++++|++....+ ...|.+++.++. +++..+ +++++ ..++++|+
T Consensus 100 ~~l--------~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~v~~----~~~~~~-~~l~~--------~~~~~~v~ 154 (360)
T 3hdo_A 100 RAF--------AAEGEEIGYVHPSYSYYGTLA----EVQGARVRTFGL----TGDFRI-AGFPE--------RYEGKVFF 154 (360)
T ss_dssp HHH--------CCTTCEEEEESSSCTHHHHHH----HHHTCEEEEECB----CTTSSB-TTCCS--------SBCSSEEE
T ss_pred HHH--------hCCCCEEEEcCCChHHHHHHH----HHCCCEEEEeeC----CCCCCH-HHHHh--------hcCCCEEE
Confidence 987 588999999999999876655 445999999954 332222 22211 12467999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCC--ccccc-cccCccEEEEcCcccCcCCCC--cEEEEEecCc
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGS--IKIDV-KEIGADFYVSNLHKWFFCPPS--VAFLYCRKSI 270 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~--~~~~~-~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~ 270 (452)
+++++||||.++|+++|.++|+++|+ ++|+|++|+... ..... ...+.++++.|++|+ +|++| +|++++++++
T Consensus 155 i~~p~nptG~~~~~~~l~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~ 232 (360)
T 3hdo_A 155 LTTPNAPLGPSFPLEYIDELARRCAG-MLVLDETYAEFAESNALELVRRHENVVVTRTLSKS-YSLAGMRIGLAIARPEV 232 (360)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHBSS-EEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTT-TSCTTSCCEEEECCHHH
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHCCC-EEEEECChHhhCCcchhHHhccCCCEEEEecchHh-hcCCccceeeEeeCHHH
Confidence 99999999999999999999999999 899999987421 11111 123456888899997 44444 7998888777
Q ss_pred cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Q 012991 271 LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP 350 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 350 (452)
++. + .... ...+.+...+.++.++++.. +.++..+++++++++++.+.|.++ ++.+..+.
T Consensus 233 ~~~-~-~~~~-------------~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 292 (360)
T 3hdo_A 233 IAA-L-DKIR-------------DHYNLDRLAQAACVAALRDQ----AYLSECCRRIRETREWFTTELRSI-GYDVIPSQ 292 (360)
T ss_dssp HHH-H-HHHS-------------CSCCSCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCS
T ss_pred HHH-H-HHhC-------------CCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCC
Confidence 664 1 1110 01233444444444444431 146788888999999999999987 77665332
Q ss_pred ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHH
Q 012991 351 EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~ 430 (452)
+.++++.++ +.+..++.+.|.+ +||.+..+..+ ..++++|++++ +.+|++
T Consensus 293 ---~~~~~~~~~-------~~~~~~l~~~l~~-~gi~v~~~~~~----------------~~~~~iRis~~---~~~e~~ 342 (360)
T 3hdo_A 293 ---GNYLFATPP-------DRDGKRVYDGLYA-RKVLVRHFSDP----------------LLAHGMRISIG---TREEME 342 (360)
T ss_dssp ---SSEEEEECT-------TCCHHHHHHHHHH-TTEECBCCCST----------------TTTTSEEEECC---CHHHHH
T ss_pred ---ccEEEEECC-------CCCHHHHHHHHHH-CCEEEEECCCC----------------CCCCEEEEEcC---CHHHHH
Confidence 567888775 3467889999976 59999754331 23579999998 899999
Q ss_pred HHHHHHHHHHhc
Q 012991 431 KFRDAVILLVEE 442 (452)
Q Consensus 431 ~l~~~l~~~~~~ 442 (452)
+++++|+++.+.
T Consensus 343 ~l~~al~~~~~~ 354 (360)
T 3hdo_A 343 QTLAALKEIGEG 354 (360)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 999999998753
No 76
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.97 E-value=1.2e-29 Score=248.99 Aligned_cols=335 Identities=15% Similarity=0.127 Sum_probs=241.4
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ 116 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~ 116 (452)
.++++|+.+.+. +.|+.+.+++.+.+.. ... |.......++++.++++++++ ++++++|+|||+|+.+++.
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~--y~~~~~~~~l~~~la~~~~~~-~~~v~~~~g~~~a~~~~~~ 96 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRALGR-----QDQ--YAPPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLLQ 96 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHTTT-----SCS--CCCTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHH-----hcC--CCCCCCCHHHHHHHHHhcCCC-hhhEEEcCChHHHHHHHHH
Confidence 457888877655 4677799998887643 111 222334678999999999996 6889999999999999999
Q ss_pred HhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 117 QIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 117 ~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++ .++||+|++++++|++....+ +..|.+++.++.+... +++.+ +++|++++ .+++++|+
T Consensus 97 ~~--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~l------~~~~~~v~ 157 (381)
T 1v2d_A 97 SL--------VGPGDEVVVLEPFFDVYLPDA----FLAGAKARLVRLDLTP-EGFRLDLSALEKAL------TPRTRALL 157 (381)
T ss_dssp HH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEEET-TEEECCHHHHHTTC------CTTEEEEE
T ss_pred Hh--------CCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeCCCCC-ccCCcCHHHHHHhc------CcCCEEEE
Confidence 87 478999999999999976543 5569999999652000 12233 88999888 56799999
Q ss_pred EeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccccc--ccCccEEEEcCcccCcCCCC--cEEEE
Q 012991 196 IDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVK--EIGADFYVSNLHKWFFCPPS--VAFLY 265 (452)
Q Consensus 196 ~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~--~~~~d~~~~s~~K~l~g~~G--~G~l~ 265 (452)
+++++||||.++| +++|+++|++||+ ++|+|++++.+.. +.++. ..+.|+++.|+||+ +|++| +|+++
T Consensus 158 ~~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~-~~~~G~r~G~~~ 235 (381)
T 1v2d_A 158 LNTPMNPTGLVFGERELEAIARLARAHDL-FLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKR-LEATGYRVGWIV 235 (381)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHH-TTCGGGCCEEEE
T ss_pred ECCCCCCCCCccCHHHHHHHHHHHHHcCC-EEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhh-cCCcccceEEEE
Confidence 9999999999987 7889999999999 7999999975432 22322 34689999999997 56666 89999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+++++++. + ... ......+.+...+.++.++++.... ..+++.++++++++++++.+.|.+. +++
T Consensus 236 ~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 300 (381)
T 1v2d_A 236 GPKEFMPR-L-AGM-----------RQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAM-GLR 300 (381)
T ss_dssp CCTTTHHH-H-HHH-----------HHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred eCHHHHHH-H-HHH-----------HhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence 98877764 1 111 0011133444455555556654421 2257888999999999999999885 787
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+..+.. +.++++.++. . + +...|.+ +||.+..+..+... ...++++|++++. +
T Consensus 301 ~~~~~~--~~~~~~~~~~------~-~---~~~~l~~-~gi~v~~g~~~~~~------------~~~~~~iRi~~~~--~ 353 (381)
T 1v2d_A 301 VYVPEG--TYFLMAELPG------W-D---AFRLVEE-ARVALIPASAFYLE------------DPPKDLFRFAFCK--T 353 (381)
T ss_dssp EECCSB--SSEEEEECTT------C-C---HHHHHHH-TCEECEEGGGGCSS------------SCCTTEEEEECCS--C
T ss_pred ecCCCc--ceEEEEecCh------H-h---HHHHHHh-CCEEEecchHhCCC------------CCCCCEEEEEeCC--C
Confidence 766543 5678888762 1 2 5556644 69999776554221 1235799999986 8
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 012991 426 LEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~~ 443 (452)
.+++++++++|+++++..
T Consensus 354 ~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 354 EEELHLALERLGRVVNSP 371 (381)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999998653
No 77
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.97 E-value=1.2e-28 Score=244.31 Aligned_cols=335 Identities=16% Similarity=0.144 Sum_probs=242.2
Q ss_pred CCCeEEeccCCCC--CCcHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 37 QHGVARINNGSFG--SCPKSVLADQQKWQLKFLQQ-PDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 37 ~~~~~~l~~~~~~--~~p~~v~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
++.+++|..+.+. ..++.+.+++.+.+..+... ......++..+..++++++++++++.+ ..+++++|++|+..
T Consensus 58 g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~~ 134 (409)
T 3kki_A 58 SPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFD---ECLLSQSGWNANVG 134 (409)
T ss_dssp CTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCS---EEEEESCHHHHHHH
T ss_pred CCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCC---eEEEecchHHHHHH
Confidence 4557777655432 34677999998887653111 111222334456778999999999985 35666777899999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
++.++ +++||.|+++.+.|.+...++.. .|.++..++ ..+ +++|++++++ .++++
T Consensus 135 ~l~~~--------~~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~----~~d----~~~le~~l~~-----~~~~~ 189 (409)
T 3kki_A 135 LLQTI--------CQPNTNVYIDFFAHMSLWEGARY----ANAQAHPFM----HNN----CDHLRMLIQR-----HGPGI 189 (409)
T ss_dssp HHHHH--------CCTTCEEEEETTSCHHHHHHHHH----TTCEEEEEC----TTC----HHHHHHHHHH-----HCSCE
T ss_pred HHHHh--------cCCCCEEEECCCcCHHHHHHHHH----cCCeEEEec----CCC----HHHHHHHHHh-----cCCeE
Confidence 99877 58999999999999998776643 588888873 222 7888988863 34799
Q ss_pred EEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccc---------cccccCccEEEEcCcccCcCCCCcEEE
Q 012991 194 AIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKI---------DVKEIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 194 v~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~---------~~~~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
|++++++||||.+.|+++|.++|++||+ ++|+|++|+.+.... +.. .++|+++.|++|++ ++.| |++
T Consensus 190 vi~~~~~nptG~~~~l~~l~~la~~~~~-~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~-~~~g-g~v 265 (409)
T 3kki_A 190 IVVDSIYSTLGTIAPLAELVNISKEFGC-ALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTF-AYRA-GAI 265 (409)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTC-EEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTT-CSSC-EEE
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHcCC-EEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhh-CCCc-eEE
Confidence 9999999999999999999999999999 799999998755421 121 25789999999985 4445 898
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
+.++++++. + .... ....+.++.+...+.++.++++.... . +.++++++++++++.+.|.++ ++
T Consensus 266 ~~~~~~~~~-~-~~~~---------~~~~~~~~~~~~~~aa~~aal~~~~~---~-~~~~~~~~~~~~~l~~~L~~~-g~ 329 (409)
T 3kki_A 266 WCNNEVNRC-V-PFIS---------YPAIFSSTLLPYEAAGLETTLEIIES---A-DNRRQHLDRMARKLRIGLSQL-GL 329 (409)
T ss_dssp EESSSGGGT-H-HHHC---------HHHHHSBCCCHHHHHHHHHHHHHHHH---C-HHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred EECHHHHHH-H-HHhC---------cCccccCCCcHHHHHHHHHHHHHHhc---C-HHHHHHHHHHHHHHHHHHHHc-CC
Confidence 888887765 1 1100 00111123333444455566676654 2 678888999999999999887 66
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+.. .+.++++.++ ...+..++.+.|.++ ||.+...+.+.. ....+++|++++..+
T Consensus 330 ~~~~----~~~~~~~~~~------~~~~~~~~~~~L~~~-Gv~v~~~~~~~~-------------~~~~~~iRi~~~~~~ 385 (409)
T 3kki_A 330 TIRS----ESQIIGLETG------DERNTEKVRDYLESN-GVFGSVFCRPAT-------------SKNKNIIRLSLNSDV 385 (409)
T ss_dssp CCCC----SSSEEEEEEE------SHHHHHHHHHHHHHT-TEECEEECTTSS-------------CTTCEEEEEECCTTC
T ss_pred ccCC----CCCEEEEEeC------CHHHHHHHHHHHHHC-CceEeeeCCCCc-------------CCCCcEEEEEccCCC
Confidence 6552 2678888776 344567899999876 999876544311 134579999999989
Q ss_pred CHHHHHHHHHHHHHHHhcc
Q 012991 425 TLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~~ 443 (452)
|++||++++++|+++++..
T Consensus 386 t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 386 NDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp CHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998753
No 78
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.97 E-value=3.4e-29 Score=241.47 Aligned_cols=316 Identities=12% Similarity=0.092 Sum_probs=226.1
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
.+.+++|+.+... +.|+.+.+++.+....... | +.....+++++++++++++ +++|++|+|+++++.+++
T Consensus 15 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~-------y-~~~~~~~lr~~la~~~~~~-~~~i~~t~G~~~~l~~~~ 85 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAVEPRVQAAIAAAAARINR-------Y-PFDAEPRVMRKLAEHFSCP-EDNLMLVRGIDECFDRIS 85 (337)
T ss_dssp CCCCEECSSCCCCSCCCHHHHHHHHHHGGGTTS-------C-CTTHHHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHH
T ss_pred CCCceEeeCCCCCCCCCHHHHHHHHHhhhhhcc-------C-CCCchHHHHHHHHHHhCcC-HHHEEEeCCHHHHHHHHH
Confidence 4578999888543 5677799998886543211 2 2356889999999999996 789999999999999998
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
.+ + +||+|++++++|.+....+ +..|.+++.+++ ++++.+ ++++++. .++++|
T Consensus 86 ~~---------~-~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~----~~~~~~d~~~l~~~--------~~~~~v 139 (337)
T 3p1t_A 86 AE---------F-SSMRFVTAWPGFDGYRARI----AVSGLRHFEIGL----TDDLLLDPNDLAQV--------SRDDCV 139 (337)
T ss_dssp HH---------S-TTSEEEEESSSCSHHHHHH----TTSCCEEEEECB----CTTSSBCHHHHTTC--------CTTEEE
T ss_pred Hh---------c-CCCeEEEeCCCcHHHHHHH----HHcCCEEEEecC----CCCCCCCHHHHHhh--------cCCCEE
Confidence 84 3 7899999999999875554 556999999954 333333 6766643 357899
Q ss_pred EEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC--CccccccccCccEEEEcCcccCcCCCC--cEEEEEecCc
Q 012991 195 IIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG--SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSI 270 (452)
Q Consensus 195 ~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g--~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~ 270 (452)
++++++||||.++|++++.++|+++++ + |+|++++.. .........+.++++.|+||+ +|++| +|+++.++++
T Consensus 140 ~i~~p~nptG~~~~~~~l~~l~~~~~~-~-ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~-~g~~G~r~G~~~~~~~~ 216 (337)
T 3p1t_A 140 VLANPSNPTGQALSAGELDQLRQRAGK-L-LIDETYVDYSSFRARGLAYGENELVFRSFSKS-YGLAGLRLGALFGPSEL 216 (337)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHCSE-E-EEECTTGGGSSCSSSCCCCBTTEEEEEESSST-TCCTTTCCEEEECCHHH
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCc-E-EEECCChhhccccccccccCCCEEEEeeCchh-ccCcchheEEEEeCHHH
Confidence 999999999999999999999999987 4 559998632 112222233567899999997 55444 6999888877
Q ss_pred cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Q 012991 271 LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP 350 (452)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 350 (452)
+.. + .... ...+.+...+.++..+++... .++..+++..++++++.+.|.++ ++.+..+.
T Consensus 217 ~~~-l-~~~~-------------~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 276 (337)
T 3p1t_A 217 IAA-M-KRKQ-------------WFCNVGTLDLHALEAALDNDR----AREAHIAKTLAQRRRVADALRGL-GYRVASSE 276 (337)
T ss_dssp HHH-H-HTTS-------------CTTCSCHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS
T ss_pred HHH-H-Hhhc-------------CCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHC-cCEECCCC
Confidence 765 2 1110 112333334444443433221 34566677778889999999887 77765443
Q ss_pred ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHH
Q 012991 351 EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYE 430 (452)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~ 430 (452)
++++++..+ +..++.+.|.+ +||.+..+..+. .++++|+|++ +.+|++
T Consensus 277 ---~~~~~~~~~---------~~~~~~~~l~~-~gi~v~~g~~~~----------------~~~~iRis~~---~~~~~~ 324 (337)
T 3p1t_A 277 ---ANFVLVENA---------AGERTLRFLRE-RGIQVKDAGQFG----------------LHHHIRISIG---REEDND 324 (337)
T ss_dssp ---SSEEEEECT---------TTHHHHHHHHH-TTEECEEGGGGT----------------CCSEEEEECC---CHHHHH
T ss_pred ---CeEEEEEcC---------CHHHHHHHHHH-CCeEEEECccCC----------------CCCeEEEecC---CHHHHH
Confidence 567777765 23467777866 599998776652 2479999998 799999
Q ss_pred HHHHHHHHHHhc
Q 012991 431 KFRDAVILLVEE 442 (452)
Q Consensus 431 ~l~~~l~~~~~~ 442 (452)
+++++|+++.++
T Consensus 325 ~l~~al~~~~~~ 336 (337)
T 3p1t_A 325 RLLAALAEYSDH 336 (337)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHhhc
Confidence 999999988653
No 79
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.97 E-value=4.2e-29 Score=249.15 Aligned_cols=356 Identities=13% Similarity=0.130 Sum_probs=234.9
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHH-----hcCCchhhhhhhhHHHHHHHHHHHhHhC--------CCCCCcEEEe
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKF-----LQQPDDFYFNSLRKGILESRAAVKDLIN--------ADDVGEISLV 104 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~~~i~~t 104 (452)
.+++.|+.+.....++.+.+++.+..... .........|....+..++++.++++++ ++ +++|++|
T Consensus 36 ~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~~~i~~~ 114 (428)
T 1iay_A 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFD-PERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCC-TTSCEEE
T ss_pred CceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC-hhhEEEc
Confidence 46788886655555556777776431000 0000011122222336778888888876 54 6899999
Q ss_pred cChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 105 DNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 105 ~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
+|+++++.+++.++ .++||+|++++++|++....+ +...|.+++.++.+. ++...+ ++++++++++
T Consensus 115 ~G~~~ai~~~~~~~--------~~~gd~Vl~~~p~y~~~~~~~---~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~ 181 (428)
T 1iay_A 115 GGATGANETIIFCL--------ADPGDAFLVPSPYYPAFNRDL---RWRTGVQLIPIHCES--SNNFKITSKAVKEAYEN 181 (428)
T ss_dssp EHHHHHHHHHHHHH--------CCTTCEEEEESSCCTTHHHHT---TTTTCCEEEEECCCT--TTTTCCCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHh--------CCCCCeEEEccCCCcchHHHH---HHhcCCEEEEeecCC--ccCCcCCHHHHHHHHHH
Confidence 99999999999987 478999999999999875543 334689999885421 111223 7888888864
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc----ccccc---------cCcc--
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKE---------IGAD-- 245 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~---------~~~d-- 245 (452)
....+.++++|++++++||||.++| +++|+++|+++|+ ++|+|++|+.+... .++.. +++|
T Consensus 182 ~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 260 (428)
T 1iay_A 182 AQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNI-HLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLV 260 (428)
T ss_dssp HHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTC-EEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSE
T ss_pred HHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCe-EEEEeccccccccCCCCccCHHHhccccccccCCCCcE
Confidence 2212357999999999999999999 8899999999999 89999999753221 11111 1256
Q ss_pred EEEEcCcccCcCCCC--cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHH
Q 012991 246 FYVSNLHKWFFCPPS--VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDG 322 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G--~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~ 322 (452)
+++.|+||+ +|++| +|++++ ++++++. + ... .. ..+.+...+.++..+++.........+.
T Consensus 261 iv~~s~sK~-~g~~Glr~G~~~~~~~~~~~~-~-~~~-----------~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 324 (428)
T 1iay_A 261 HIVYSLSKD-MGLPGFRVGIIYSFNDDVVNC-A-RKM-----------SS--FGLVSTQTQYFLAAMLSDEKFVDNFLRE 324 (428)
T ss_dssp EEEEESTTT-SSCGGGCEEEEEESCHHHHHH-H-HHH-----------HT--TSCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEecchhh-cCCCCceEEEEEeCCHHHHHH-H-HHH-----------Hh--cccCCHHHHHHHHHHhcChHHHHHHHHH
Confidence 889999997 56556 599988 4555553 1 111 00 0122333333333333321100113567
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
++++++++++++.+.|.++ ++.+..+.. ++++++.++......+..+..++.+.|.+++||.+..+..+..
T Consensus 325 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~------ 395 (428)
T 1iay_A 325 SAMRLGKRHKHFTNGLEVV-GIKCLKNNA--GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC------ 395 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBCCCSS--SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC------
T ss_pred HHHHHHHHHHHHHHHHHhc-CCcccCCCe--eEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCC------
Confidence 8888899999999999987 777655433 6788888863110001124567888887656999977655421
Q ss_pred CCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 403 AGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++ .++++++++++++|++++++
T Consensus 396 --------~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 396 --------QEPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp --------SSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred --------CCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 22579999998 57999999999999999865
No 80
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.97 E-value=1.9e-29 Score=251.10 Aligned_cols=343 Identities=12% Similarity=0.070 Sum_probs=244.7
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-DVGEISLVDNATTAAAIV 114 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a~~~~ 114 (452)
+..++.|..+... +.|+.+.+++.+.+... ...|.....+..+++.+.+++.++.+ ++++|++|+|+++|+..+
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a 135 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREH----IFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIA 135 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHC----CSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcC----CcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHH
Confidence 5778888777654 56788999999887541 11222223667788889999988832 368999999999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
+.++ .++|++|++..+.|++....+ ...|.+++.+++.+ .+....+ +++|+++++ .+++++
T Consensus 136 ~~~~--------~~~gd~Vi~~~~~y~~~~~~~----~~~g~~~~~~~~~~-~~~~~~~d~~~le~~i~-----~~~~~~ 197 (421)
T 3l8a_A 136 LQAF--------SEKGDAVLINSPVYYPFARTI----RLNDHRLVENSLQI-INGRFEIDFEQLEKDII-----DNNVKI 197 (421)
T ss_dssp HHHH--------SCTEEEEEEEESCCHHHHHHH----HHTTEEEEEEECEE-ETTEEECCHHHHHHHHH-----HTTEEE
T ss_pred HHHh--------cCCCCEEEECCCCcHHHHHHH----HHCCCEEEeccccc-cCCCeeeCHHHHHHHhh-----ccCCeE
Confidence 9987 478999999999999876655 44699999986531 1111123 899999995 268999
Q ss_pred EEEeccCCCCcccc---cHHHHHHHHHHcCCCEEEEecccccCCc----cccccc-----cCccEEEEcCcccCcCCCC-
Q 012991 194 AIIDHITSMPCVVI---PVRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE-----IGADFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 194 v~~~~~~n~tG~~~---~l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~-----~~~d~~~~s~~K~l~g~~G- 260 (452)
|++++++||+|.++ ++++|+++|++||+ ++|+|++|+.... ...+.. .+.++++.|++|++ |+.|
T Consensus 198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~ 275 (421)
T 3l8a_A 198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGV-ILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTF-NIAGT 275 (421)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHH-TCGGG
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhc-cCchh
Confidence 99999999999984 57889999999999 8999999875321 112211 24558899999974 4344
Q ss_pred -cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 -VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 -~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|+++++ +++.+. + .+.. .....++++...+.++.++++...+ .+++++++++++++++.+.|
T Consensus 276 ~~G~~~~~~~~l~~~-~-~~~~----------~~~~~~~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~~~l~~~L 340 (421)
T 3l8a_A 276 KNSFAIIQNESLRRK-F-QYRQ----------LANNQHEVPTVGMIATQAAFQYGKP---WLEELKTVIEGNIKLVIKEL 340 (421)
T ss_dssp CCEEEECCSHHHHHH-H-HHHH----------HHTTCSCCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred heEeEEcCCHHHHHH-H-HHHH----------HhcccCCCCHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6998887 565554 1 1110 0011134555555555556554332 36788888999999999999
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
.+.+++.+..+.. ..+.|+.++. .+.+..++.+.|.+++||.+..+..+.. ...+++|+
T Consensus 341 ~~~~~i~~~~~~~--~~~~~v~~~~-----~~~~~~~l~~~l~~~~gi~v~~g~~f~~--------------~~~~~iRi 399 (421)
T 3l8a_A 341 EAKTKIKVMEPEG--TYLVWLDFSA-----YAIAQPQLSEKLQNEAKVVLNDGAHFGK--------------EGKYFARL 399 (421)
T ss_dssp HHHCSCEEECCSB--SSEEEEECGG-----GTCCTTHHHHHHHHTTCEECEEGGGGCG--------------GGTTEEEE
T ss_pred HhCCCceEeCCCe--eEEEEEeccc-----cCCCHHHHHHHHHHhCCEEEECchhhCC--------------CCCCEEEE
Confidence 8887887766654 5566677752 1245668888887657999987665421 34689999
Q ss_pred cccccCCHHHHHHHHHHHHHHHh
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+++ +++++|++++++|+++++
T Consensus 400 ~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 400 NVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp ECC--SCHHHHHHHHHHHHHHC-
T ss_pred Eec--CCHHHHHHHHHHHHHHHh
Confidence 998 489999999999998764
No 81
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.97 E-value=1.6e-29 Score=249.77 Aligned_cols=336 Identities=14% Similarity=0.119 Sum_probs=234.9
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHhcCCc-hhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE-ecChhHHHHHHHHHhh
Q 012991 42 RINNGSFGSCPKSVLADQQKWQLKFLQQPD-DFYFNSLRKGILESRAAVKDLINADDVGEISL-VDNATTAAAIVLQQIG 119 (452)
Q Consensus 42 ~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~-t~g~t~a~~~~~~~l~ 119 (452)
++.++++.+.|+.|++++.+... .... ..+...+.+..+++++++++++|+++++++++ |+|||+|+.+++.++
T Consensus 42 ~~~~~~~~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l- 117 (398)
T 2fyf_A 42 GRFGSGPSKVRLEQLQTLTTTAA---ALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL- 117 (398)
T ss_dssp CBCCSSSCCCCHHHHHGGGTTTT---TTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT-
T ss_pred ccccCCCCCCCHHHHHHHhhcCC---CccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh-
Confidence 44445566777879998876310 0011 11223345678999999999999963468998 999999999999987
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc--CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA--GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
+++| .+++....|... +...+... |.+++.+++++ +...+. .+ ++++++|+++
T Consensus 118 -------~~~g-v~~v~~~~~~~~---~~~~~~~~~~g~~~~~v~~~~-----g~~~~~---~i------~~~~~~v~~~ 172 (398)
T 2fyf_A 118 -------IDKR-SLHLTYGEFSAK---FASAVSKNPFVGEPIIITSDP-----GSAPEP---QT------DPSVDVIAWA 172 (398)
T ss_dssp -------CSSC-EEEEECSHHHHH---HHHHHHHCTTSCCCEEEECCT-----TCCCCC---CC------CTTCSEEEEE
T ss_pred -------cCCC-eEEEeCCHHHHH---HHHHHHHhCCCCceEEEecCC-----CCCCCc---cc------cCCCCEEEEe
Confidence 3555 233345555322 11124445 78888886531 111110 13 5689999999
Q ss_pred ccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCC-
Q 012991 198 HITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMH- 276 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~- 276 (452)
+++||||.+.|+++|.++ +|+ ++|+|++|+.+..++++. ++|++++|+||+++++.|+|++++++++++. +.
T Consensus 173 ~~~nptG~~~~~~~i~~~---~~~-~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~-l~~ 245 (398)
T 2fyf_A 173 HNETSTGVAVAVRRPEGS---DDA-LVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSR-IEA 245 (398)
T ss_dssp SEETTTTEECCCCCCTTC---C-C-EEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHH-HHH
T ss_pred CcCCCcceecchHHhhhh---cCC-eEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHH-hhc
Confidence 999999999999999887 899 799999999988877654 4799999999985555469999999887654 10
Q ss_pred --------CCceeccCCCCcccc----cccccccCccccccHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 277 --------HPVVSHEFGNGLPIE----SAWIGTRDYSAQLVIPSAVTFVSRFEGG-IDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 277 --------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~al~~~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
.++.. .+.... ....++++...++++.++++++.+. | ++.++++.+++++++.+.|.++++
T Consensus 246 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~--g~~~~~~~~~~~~~~~l~~~L~~~~g 319 (398)
T 2fyf_A 246 IAATGRWVPDFLS----LPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGN--GGLDWAVKRTADSSQRLYSWAQERPY 319 (398)
T ss_dssp HHHTTCCCCGGGC----HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccCCCCCcEEe----hHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11110 000000 1123566776777788888877753 5 899999999999999999998877
Q ss_pred CCcCC-Ccccccc-eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 344 TSLGS-PPEICAA-MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 344 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
+++.. ++...++ ++++.++ .+.+..++.+.|.++ ||.++.++.. ..++++|+|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~-gI~v~~g~~~----------------~~~~~iRis~~ 376 (398)
T 2fyf_A 320 TTPFVTDPGLRSQVVGTIDFV------DDVDAGTVAKILRAN-GIVDTEPYRK----------------LGRNQLRVAMF 376 (398)
T ss_dssp EEESCCSGGGBCSSEEEEEEC------TTSCHHHHHHHHHHT-TCBCCSCCTT----------------TCSSEEEEECC
T ss_pred ceeccCChhhcCCcEEEEECC------CCCCHHHHHHHHHHC-CcEEecCccc----------------CCCCEEEEEec
Confidence 77664 2222244 8888886 345678899999876 9998654221 22479999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++|++|+++++++|++++++
T Consensus 377 ~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 377 PAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998753
No 82
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=1.1e-29 Score=251.84 Aligned_cols=338 Identities=15% Similarity=0.116 Sum_probs=235.4
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC----CC-CCCcEEEecChhH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----AD-DVGEISLVDNATT 109 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~~~i~~t~g~t~ 109 (452)
.++.+++|+.+.++ ..|+.+.+++ +.+.. ... .+.......++++.++++++ .+ +++++++|+|||+
T Consensus 41 ~g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~----~~~--~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~ 113 (409)
T 2gb3_A 41 RGVRIHHLNIGQPDLKTPEVFFERI-YENKP----EVV--YYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSE 113 (409)
T ss_dssp TTCEEEECSSCCCCSCCCTHHHHHH-HHTCC----SSC--CCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHH
T ss_pred cCCCEEeccCCCCCCCCCHHHHHHH-HHHhc----CCC--CCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHH
Confidence 46789999988876 4566688888 65431 111 12222335667777777764 21 2579999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGK 189 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 189 (452)
|+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.... +.... +++|++++ .+
T Consensus 114 a~~~~~~~~--------~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~-~~~~~-~~~l~~~l------~~ 173 (409)
T 2gb3_A 114 AILFSFAVI--------ANPGDEILVLEPFYANYNAFA----KIAGVKLIPVTRRME-EGFAI-PQNLESFI------NE 173 (409)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCTHHHHHH----HHHTCEEEEEECCGG-GTSCC-CTTGGGGC------CT
T ss_pred HHHHHHHHh--------CCCCCEEEEcCCCchhHHHHH----HHcCCEEEEeccCCC-CCCcc-HHHHHHhh------Cc
Confidence 999999987 478999999999999876655 445999999965310 01011 46777777 46
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccc-ccc-cCccEEEEcCcccCcCCCC-
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KID-VKE-IGADFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~-~~~-~~~d~~~~s~~K~l~g~~G- 260 (452)
++++|++++++||||.++| +++|.++|+++|+ ++|+|++++.+.. ... +.. .+.|+++.|+||+ +|++|
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~g~~G~ 251 (409)
T 2gb3_A 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGL-FLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKK-FSACGA 251 (409)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTT-TTCGGG
T ss_pred CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCC-EEEEECcccccccCCCCCCccccCCCCEEEEecchhc-cCCccc
Confidence 8999999999999999975 7889999999999 7999999986543 122 222 2568999999997 56666
Q ss_pred -cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 -VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 -~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|++++++ ++++. + ... ...+. +++...+.++.++++.... +++.++++++++++++.+.|
T Consensus 252 r~G~~~~~~~~l~~~-l-~~~-----------~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L 314 (409)
T 2gb3_A 252 RVGCLITRNEELISH-A-MKL-----------AQGRL-APPLLEQIGSVGLLNLDDS---FFDFVRETYRERVETVLKKL 314 (409)
T ss_dssp CCEEEECSCHHHHHH-H-HHH-----------HHHSC-CCCHHHHHHHHHHHTCCHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECcHHHHHH-H-HHH-----------HhccC-CCCHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHHH
Confidence 89999988 77654 1 111 00111 3333333334444432121 46778888899999999999
Q ss_pred HHHcCCCc-CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhh-----cceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 339 ANAWGTSL-GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVR-----FGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 339 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
.++ ++.+ ..+.. +.++++.++ +.+..++.+.|.++ +||.+..+..+.... ...
T Consensus 315 ~~~-g~~~~~~~~~--~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~-----------~~~ 373 (409)
T 2gb3_A 315 EEH-GLKRFTKPSG--AFYITAELP-------VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTP-----------GLG 373 (409)
T ss_dssp HHT-TCCCBCCCSB--SSEEEEECS-------SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSST-----------TTT
T ss_pred HHc-CceeeeCCCe--eEEEEEEeC-------CCCHHHHHHHHHhccccccCcEEEeCchHhCCCC-----------CCC
Confidence 887 7776 54443 566777775 24567898888765 599997765442100 123
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++|++++ ++++++++++++|++++++
T Consensus 374 ~~~iRis~~--~~~e~i~~~~~~l~~~l~~ 401 (409)
T 2gb3_A 374 KKEIRIACV--LEKDLLSRAIDVLMEGLKM 401 (409)
T ss_dssp SSEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 579999998 6999999999999998864
No 83
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.97 E-value=2.7e-28 Score=247.30 Aligned_cols=385 Identities=11% Similarity=0.032 Sum_probs=247.5
Q ss_pred CCCCCCCCCHHHHHhhhcc-----C---CCCeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHH
Q 012991 17 KPKLTRCISEAEIRDEFSH-----H---QHGVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESR 86 (452)
Q Consensus 17 ~~~~~~~~~~~~ir~~~~~-----~---~~~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 86 (452)
.+.|...++++++.+++.. . .++ .|++.-..+. .|..+.+.+...+ +.+...+ .+....++.++++
T Consensus 44 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~---n~~~~~~~~~~~~~~le~~~~ 119 (486)
T 1js3_A 44 ATAPQEPDTFEDILQDVEKIIMPGVTHWHSP-YFFAYFPTASSYPAMLADMLCGAI---GCIGFSWAASPACTELETVMM 119 (486)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTGGGCCCTTST-TBCSSSCCCCCHHHHHHHHHHHHH---CCCCSSGGGCHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCCCCCCC-CceEeCCCCCCHHHHHHHHHHHHh---CcCccccccChhHHHHHHHHH
Confidence 3334556777666555421 1 122 2444433333 3344555555543 2222221 2234566777899
Q ss_pred HHHHhHhCCCC--------CCcEEEecChhHHHHHHHHHhhcccccCCC-CCC---------C-EEEEeCCcchhHHHHH
Q 012991 87 AAVKDLINADD--------VGEISLVDNATTAAAIVLQQIGRGFTEGRF-HRN---------D-TVLMLHCAFQAVKKSI 147 (452)
Q Consensus 87 ~~la~~~~~~~--------~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~-~~g---------~-~Vl~~~~~~~s~~~~~ 147 (452)
+++++++|.+. ...+++|+|||+|+..++.++...+..... ..| + .|+++.++|+++..++
T Consensus 120 ~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~ 199 (486)
T 1js3_A 120 DWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAG 199 (486)
T ss_dssp HHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHH
T ss_pred HHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHH
Confidence 99999999962 146899999999999998876321100000 002 2 3778999999977665
Q ss_pred HHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEE
Q 012991 148 QAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFV 226 (452)
Q Consensus 148 ~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~iv 226 (452)
.. .|++++.++ .++++.+ +++|+++|++....+..+.+|++++++|++|.+.|+++|+++|++||+ ++|+
T Consensus 200 ~~----~G~~v~~v~----~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~-~lhv 270 (486)
T 1js3_A 200 LI----GGVKLKAIP----SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDI-WLHV 270 (486)
T ss_dssp HH----HTCEEEEEC----CCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTC-EEEE
T ss_pred Hh----CCCceEEee----cCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-EEEE
Confidence 44 599999995 4445555 899999996543223346799999999999999999999999999999 6999
Q ss_pred ecccccCCcccc-ccc-----cCccEEEEcCcccCcCCCCcEEEEEecCc--cccCC--CCCceeccCC-CCccccc---
Q 012991 227 DAAHAMGSIKID-VKE-----IGADFYVSNLHKWFFCPPSVAFLYCRKSI--LSSDM--HHPVVSHEFG-NGLPIES--- 292 (452)
Q Consensus 227 D~a~~~g~~~~~-~~~-----~~~d~~~~s~~K~l~g~~G~G~l~~~~~~--~~~~l--~~~~~~~~~~-~~~~~~~--- 292 (452)
|++++.+....+ ... .++|++++++|||+++|.|+|+++++++. .+. + ..++...... .+.....
T Consensus 271 D~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~-~~~~~~yl~~~~~~~~~~~~~~~~ 349 (486)
T 1js3_A 271 DAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGA-FKLDPVYLKHSHQGSGLITDYRHW 349 (486)
T ss_dssp ECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGG-GC------------CCSCCCGGGS
T ss_pred ehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHH-hcCCchhhCCCcccccCCCCcccc
Confidence 999987765332 221 26899999999998888899999997653 232 1 1122111000 0000000
Q ss_pred ccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhh
Q 012991 293 AWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDD 372 (452)
Q Consensus 293 ~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (452)
....+.. ...+++.++++.+... |++++.++..++++++.+.|.+++++++..++. .+++.|.++. ....
T Consensus 350 ~~~~~rr-~~~~~~~~al~~~g~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~v~f~~~~-----~~~~ 419 (486)
T 1js3_A 350 QLPLGRR-FRSLKMWFVFRMYGVK--GLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT--LGLVCFRLKG-----SDGL 419 (486)
T ss_dssp SSCSCCC-CTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC--SSEEEEEESS-----CHHH
T ss_pred CCCCCCc-hhHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCc--eeEEEEEecC-----hHHH
Confidence 0001111 1234566666665543 788999999999999999999988888766543 6688887751 1112
Q ss_pred HHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc-cccCCHHHHHHHHHHHHHHHhc
Q 012991 373 ALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH-QVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 373 ~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++.+.|.++ |+.+...... ...+++|+++ +.++|.+||+++++.|++++++
T Consensus 420 ~~~l~~~L~~~-g~~~~~~~~~----------------~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 420 NEALLERINSA-RKIHLVPCRL----------------RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp HHHHHHHHHHH-TSCBCEEEEE----------------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCEEEEEEEE----------------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46788888776 7654222211 2256999997 5668999999999999988754
No 84
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.97 E-value=3.1e-29 Score=249.09 Aligned_cols=344 Identities=13% Similarity=0.102 Sum_probs=238.9
Q ss_pred CCeEEeccCCC-----CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------------CCCCCc
Q 012991 38 HGVARINNGSF-----GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------------ADDVGE 100 (452)
Q Consensus 38 ~~~~~l~~~~~-----~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~~ 100 (452)
.++++|+.+.+ .+.|+.+.+++.+.+... . ...|.......+++++++++++ ++ +++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~----~-~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-~~~ 106 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQ----E-CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-KDN 106 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTT----C-SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-GGG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCC----c-cCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-cce
Confidence 46899988864 366788999998876531 1 1122223446778888888887 54 689
Q ss_pred EEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHH
Q 012991 101 ISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKK 179 (452)
Q Consensus 101 i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~ 179 (452)
|++|+|+++|+.+++.++ +++||+|+++.++|++....+ ...|.+++.++... ++...+ +++|++
T Consensus 107 v~~~~g~~~al~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~ 172 (416)
T 1bw0_A 107 VVLCSGGSHGILMAITAI--------CDAGDYALVPQPGFPHYETVC----KAYGIGMHFYNCRP--ENDWEADLDEIRR 172 (416)
T ss_dssp EEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTHHHHHH----HHTTCEEEEEEEEG--GGTTEECHHHHHH
T ss_pred EEEeCChHHHHHHHHHHh--------CCCCCEEEEcCCCcHhHHHHH----HHcCcEEEEeecCc--ccCCCCCHHHHHH
Confidence 999999999999999987 478999999999999876544 55699999886421 111223 899999
Q ss_pred HHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc--------ccccccc---Ccc
Q 012991 180 GIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI--------KIDVKEI---GAD 245 (452)
Q Consensus 180 ~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~--------~~~~~~~---~~d 245 (452)
++ .+++++|++++++||||.++| +++|+++|++||+ ++|+|++++.... ..++..+ +.+
T Consensus 173 ~l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (416)
T 1bw0_A 173 LK------DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRL-PLFSDEIYAGMVFKGKDPNATFTSVADFETTVPR 245 (416)
T ss_dssp HC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-CEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCE
T ss_pred Hh------ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCCCCccCHHHccCCCcE
Confidence 88 567899999999999999999 8899999999999 7999999876321 1122222 235
Q ss_pred EEEEcCcccCcCCCC--cEEEEEecC--ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHH
Q 012991 246 FYVSNLHKWFFCPPS--VAFLYCRKS--ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGID 321 (452)
Q Consensus 246 ~~~~s~~K~l~g~~G--~G~l~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~ 321 (452)
+++.|++|+ ++.+| +|+++++++ +++. +...... . .....+++...+.++.++++.... ++++
T Consensus 246 i~~~s~sK~-~~~~Glr~G~~~~~~~~~~~~~-~~~~~~~--------~-~~~~~~~~~~~~~a~~~~l~~~~~--~~~~ 312 (416)
T 1bw0_A 246 VILGGTAKN-LVVPGWRLGWLLYVDPHGNGPS-FLEGLKR--------V-GMLVCGPCTVVQAALGEALLNTPQ--EHLD 312 (416)
T ss_dssp EEEEESTTT-TSCGGGCCEEEEEECTTCSCHH-HHHHHHH--------H-HHHHTCSCHHHHHHHHHHHHSSCH--HHHH
T ss_pred EEEecchhh-CCCCCceEEEEEeeCchhhHHH-HHHHHHH--------H-hccccCCCcHHHHHHHHHHhcccH--HHHH
Confidence 778899997 44455 799998774 4443 1100000 0 001133444455555555543111 1467
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
.++++++++++++.+.|.+++++.+..+.. +.++++.++... .....+..++.+.|.+++||.+..+..+.
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~gi~v~~g~~f~------ 383 (416)
T 1bw0_A 313 QIVAKIEESAMYLYNHIGECIGLAPTMPRG--AMYLMSRIDLEK-YRDIKTDVEFFEKLLEEENVQVLPGTIFH------ 383 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEEECCCCB--TTEEEEEECGGG-BSSCCSHHHHHHHHHHHHCEECEEGGGGT------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCCCe--eEEEEEeCCHHH-cCCCCCHHHHHHHHHHHCCEEEecccccC------
Confidence 788889999999999998876777655543 667887775210 00113567888887544599998766541
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|++++ +++++++++++.|++++++
T Consensus 384 ----------~~~~iRis~~--~~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 384 ----------APGFTRLTTT--RPVEVYREAVERIKAFCQR 412 (416)
T ss_dssp ----------CTTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 2469999996 5899999999999998865
No 85
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.97 E-value=5.6e-29 Score=245.80 Aligned_cols=338 Identities=9% Similarity=0.024 Sum_probs=235.4
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH----hC--CCCCCcEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL----IN--ADDVGEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~--~~~~~~i~~t~g~t~a 110 (452)
+.+++|+.+..+ ..|+.+.+++.+.+... ...|... ..++++.++++ +| ++ +++|++|+|+++|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~y~~~----~~~l~~~la~~l~~~~g~~~~-~~~v~~t~g~~~a 101 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDET----VLGYTGP----TEEYKKTVKKWMKDRHQWDIQ-TDWIINTAGVVPA 101 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHC----CCSSBCC----CHHHHHHHHHHHHHHHCCCCC-GGGEEEESSHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcC----CCCCCCC----cHHHHHHHHHHHHHHhCCCCC-hhhEEEcCCHHHH
Confidence 467888777765 45778999998887531 1112221 45555666655 47 43 6799999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ .++||+|+++.++|++....+ ...|.+++.++...+ +....+ +++|+++++ .+
T Consensus 102 ~~~~~~~l--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~-~g~~~~d~~~l~~~l~-----~~ 163 (399)
T 1c7n_A 102 VFNAVREF--------TKPGDGVIIITPVYYPFFMAI----KNQERKIIECELLEK-DGYYTIDFQKLEKLSK-----DK 163 (399)
T ss_dssp HHHHHHHH--------CCTTCEEEECSSCCTHHHHHH----HTTTCEEEECCCEEE-TTEEECCHHHHHHHHT-----CT
T ss_pred HHHHHHHh--------cCCCCEEEEcCCCcHhHHHHH----HHcCCEEEecccccC-CCCEEEcHHHHHHHhc-----cC
Confidence 99999987 478999999999999876554 456999988854200 001123 899999994 26
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccc-----cCccEEEEcCcccCcC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE-----IGADFYVSNLHKWFFC 257 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~-----~~~d~~~~s~~K~l~g 257 (452)
++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ..++.. .+.++++.|++|+ +|
T Consensus 164 ~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~-~~ 241 (399)
T 1c7n_A 164 NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDL-MLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKT-FN 241 (399)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSC-EEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHH-HT
T ss_pred CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhh-cc
Confidence 7999999999999999999 8899999999999 8999999986332 223322 2456889999997 55
Q ss_pred CCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM 334 (452)
Q Consensus 258 ~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l 334 (452)
++| +|++++++ ++++. + .... .....++++...+.++.++++...+ .++.++++++++++++
T Consensus 242 ~~G~r~G~~~~~~~~~~~~-l-~~~~----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l 306 (399)
T 1c7n_A 242 IAGMGMSNIIIKNPDIRER-F-TKSR----------DATSGMPFTTLGYKACEICYKECGK---WLDGCIKVIDKNQRIV 306 (399)
T ss_dssp CGGGCCEEEECCCHHHHHH-H-HHHH----------HHTTCCCCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHH
T ss_pred ccchheEEEEECCHHHHHH-H-HHHH----------hhcccCCCCHHHHHHHHHHHhCChH---HHHHHHHHHHHHHHHH
Confidence 455 79998864 45554 1 1110 0000123444444444445543222 4677888889999999
Q ss_pred HHHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 335 ARMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 335 ~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.+.|.+ ++++.+..+.. +.++|+.++. .+.+..++.+.|.+++||.+.++..+.. ..+
T Consensus 307 ~~~L~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------~~~ 365 (399)
T 1c7n_A 307 KDFFEVNHPEIKAPLIEG--TYLQWIDFRA-----LKMDHKAMEEFMIHKAQIFFDEGYIFGD--------------GGI 365 (399)
T ss_dssp HHHHHHHCTTSBCCCCSB--SSEEEEECGG-----GCCCHHHHHHHHHHTTCCCCEEGGGGCG--------------GGT
T ss_pred HHHHHhhCCCCeEecCCc--eEEEEEEccc-----CCCCHHHHHHHHHHhCCEEEeCccccCC--------------CCC
Confidence 999988 67877665543 5566788762 0246778999986446999977655421 235
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++. ++++++++++.|++++++
T Consensus 366 ~~iRis~~~--~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 366 GFERINLAA--PSSVIQESLERLNKALKD 392 (399)
T ss_dssp TEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecc--CHHHHHHHHHHHHHHHHH
Confidence 799999986 478899999999998865
No 86
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.97 E-value=1.4e-29 Score=250.61 Aligned_cols=338 Identities=13% Similarity=0.053 Sum_probs=237.3
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CC-CcEEEecChhH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DV-GEISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~-~~i~~t~g~t~ 109 (452)
+..+++|+.+... ..++.+.+++.+.+... ....|.......++++++++++ |++ ++ ++|++|+|+++
T Consensus 46 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 46 PLPLINMAVGIPDGPTPQGIIDHFQKALTIP-----ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp SSCCEECCCCSCSSCCCHHHHHHHHHHTTCH-----HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred CCCEEecCCcCCCCCCCHHHHHHHHHHHhCC-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 3458899887665 35677888888765321 1111222234566777777777 874 33 69999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+. +...+ +++|+++++
T Consensus 121 al~~~~~~l--------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~---~~~~~d~~~l~~~l~------ 179 (404)
T 2o1b_A 121 GLVAVPTCV--------INPGDYVLLPDPGYTDYLAGV----LLADGKPVPLNLEP---PHYLPDWSKVDSQII------ 179 (404)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCSSHHHHH----HHTTCEEEEEECCT---TTCCCCGGGSCHHHH------
T ss_pred HHHHHHHHh--------cCCCCEEEEcCCCchhHHHHH----HHCCCEEEEeccCc---ccCcCCHHHHHHhhc------
Confidence 999999987 478999999999999976654 44699999997531 11112 677888773
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccccccc----CccEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKEI----GADFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~~----~~d~~~~s~~K~l~g~ 258 (452)
+++++|++++++||||.++| +++|+++|+++|+ ++|+|++++.+.. +.++... +.++++.|++|+ +|+
T Consensus 180 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~-~g~ 257 (404)
T 2o1b_A 180 DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDT-KIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKG-YNM 257 (404)
T ss_dssp HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSC-EEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTT-TTC
T ss_pred cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCC-EEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchh-ccC
Confidence 57899999999999999986 6788999999999 7999999986432 2222222 457899999997 454
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + ... ...+..+.+...+.++.++++.... .++.++++++++++++.+
T Consensus 258 ~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~~ 321 (404)
T 2o1b_A 258 SGFRVGFAVGNKDMIQA-L-KKY-----------QTHTNAGMFGALQDAAIYALNHYDD---FLEEQSNVFKTRRDRFEA 321 (404)
T ss_dssp GGGCCEEEEECHHHHHH-H-HHH-----------HHHHCCCCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHH
T ss_pred chhheEeEecCHHHHHH-H-HHH-----------HhhccCCCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHH
Confidence 45 7999988877764 1 111 1111123444444444444443221 467788888999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++ ++.+..+.. +.++++.++ .+.+..++.+.|.+++||.+..+..+.. ..++++
T Consensus 322 ~L~~~-g~~~~~~~~--g~~~~~~~~------~~~~~~~l~~~l~~~~gi~v~~g~~f~~--------------~~~~~i 378 (404)
T 2o1b_A 322 MLAKA-DLPFVHAKG--GIYVWLETP------PGYDSEQFEQFLVQEKSILVAPGKPFGE--------------NGNRYV 378 (404)
T ss_dssp HHHHT-TCCEECCCB--SSEEEEECC------TTCCHHHHHHHHHHHHCEECEESGGGCG--------------GGTTEE
T ss_pred HHHhc-CCeecCCCc--ceEEEEeCC------CCCCHHHHHHHHHHHCCEEEeCchhhCc--------------CCCCeE
Confidence 99887 777655443 556888886 2446678888876546999977655421 235799
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
|++++. ++++++++++.|++++++.
T Consensus 379 Ris~~~--~~e~l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 379 RISLAL--DDQKLDEAAIRLTELAYLY 403 (404)
T ss_dssp EEECCS--CTTHHHHHHHHHHGGGGGG
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHHhh
Confidence 999986 7889999999999887653
No 87
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.97 E-value=1.3e-28 Score=246.88 Aligned_cols=348 Identities=13% Similarity=0.122 Sum_probs=241.5
Q ss_pred CCCeEEeccCCCCC---CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCCCCCcEEEecChhH
Q 012991 37 QHGVARINNGSFGS---CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NADDVGEISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~~---~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~i~~t~g~t~ 109 (452)
.++++.|..+.+.+ .++.+.+++.+.+... +.....|....+..++++++++++ |.+++++|++|+|+++
T Consensus 75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~---~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~ 151 (448)
T 3aow_A 75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKY---ADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQ 151 (448)
T ss_dssp TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHS---HHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHH
T ss_pred CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhh---hHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHH
Confidence 46789998776542 5667888888776541 111223433445677888888888 8732689999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGK 189 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 189 (452)
|+.+++.++ +++||+|+++.|.|++....+ +..|.+++.++. +.++..+++|+++++.......
T Consensus 152 al~~~~~~l--------~~~Gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~----~~~g~d~~~L~~~l~~~~~~~~ 215 (448)
T 3aow_A 152 ALDLIGRVF--------LNPGDIVVVEAPTYLAALQAF----NFYEPQYIQIPL----DDEGMKVEILEEKLKELKSQGK 215 (448)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEE----ETTEECHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH--------cCCCCEEEEeCCChHHHHHHH----HHcCCEEEEecc----CCCCCCHHHHHHHHhhhhccCC
Confidence 999999987 478999999999999876654 446999999864 2233228899988851000024
Q ss_pred ceEEE-EEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----cccc---cccCccEEEEcCcccCcCC
Q 012991 190 MIRLA-IIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KIDV---KEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv-~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~---~~~~~d~~~~s~~K~l~g~ 258 (452)
++++| ++++++||||.++|. ++|.++|++||+ ++|+|++++.+.. ..++ ...+.++++.|++|++ +
T Consensus 216 ~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~-~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~-~- 292 (448)
T 3aow_A 216 KVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDF-IVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKIL-A- 292 (448)
T ss_dssp CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTT-C-
T ss_pred CCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCC-EEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhc-c-
Confidence 78997 578999999999874 588999999999 8999999986432 1122 2224578899999974 5
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + ... ...+..+.+...+.++..+++... +...++.++++++++++++.+
T Consensus 293 ~GlriG~v~~~~~l~~~-l-~~~-----------~~~~~~~~~~~~q~a~~~~L~~~~-~~~~~~~~~~~~~~~~~~l~~ 358 (448)
T 3aow_A 293 PGFRIGWMVGDPGIIRK-M-EIA-----------KQSTDLCTNVFGQVVAWRYVDGGY-LEKHIPEIRKFYKPRRDAMLE 358 (448)
T ss_dssp GGGCCEEEEECHHHHHH-H-HHH-----------HHHHHSSCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccEEEEEeCHHHHHH-H-HHH-----------HHHhcCCCCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 56 7999998877765 1 111 000111223334433333443210 011366777788889999999
Q ss_pred HHHHH-c-CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 337 MLANA-W-GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 337 ~L~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
.|.+. + ++.+..|.. +.++|+.++ .+.+..++.+.|.++ ||.+.++..+... ...++
T Consensus 359 ~L~~~~~~g~~~~~p~~--g~~~~v~~~------~~~~~~~l~~~l~~~-gV~v~pg~~f~~~------------~~~~~ 417 (448)
T 3aow_A 359 ALEEFMPEGVKWTKPEG--GMFIWVTLP------DGIDSKKMLERAIKK-GVAYVPGEAFYAH------------RDVKN 417 (448)
T ss_dssp HHHHHCCTTCEECCCSB--SSEEEEECS------TTCCHHHHHHHHHHT-TEECEEGGGGSTT------------CCCCS
T ss_pred HHHHhCCCCeEEeCCCc--cEEEEEEcC------CCCCHHHHHHHHHHC-CcEEEcchhhcCC------------CCCCC
Confidence 99874 5 566655544 678899887 345677899999876 9999876554221 12357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++|+|++. .++++|+.++++|++++++
T Consensus 418 ~iRls~~~-~~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 418 TMRLNFTY-VDEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp EEEEECSS-SCTHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 99999986 3899999999999998865
No 88
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.97 E-value=2.4e-29 Score=246.52 Aligned_cols=333 Identities=16% Similarity=0.124 Sum_probs=233.8
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChh
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNAT 108 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t 108 (452)
.+..++.|+.+.+. ..|+.+.+++.+.+.. + ....|.......++++++++++ |++ +++ +|++|+|++
T Consensus 23 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~----~-~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~ 97 (376)
T 2dou_A 23 RGVGLIDLSIGSTDLPPPEAPLKALAEALND----P-TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQ 97 (376)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHTTC----G-GGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHH
T ss_pred cCCCEEeccCCCCCCCCCHHHHHHHHHHHhC----C-CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence 46778999887765 3567788888876532 1 1112333346778888888887 874 345 999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+|+.+++.++ .++||+|++++++|++....+ ...|.+++.++. ++...+ ++++++.++
T Consensus 98 ~a~~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~~~----~~~~~~d~~~l~~~l~----- 156 (376)
T 2dou_A 98 EGLAHLLLAL--------TEPEDLLLLPEVAYPSYFGAA----RVASLRTFLIPL----REDGLADLKAVPEGVW----- 156 (376)
T ss_dssp HHHHHHHHHH--------CCTTCEEEEESSCCHHHHHHH----HHTTCEEEEECB----CTTSSBCGGGSCHHHH-----
T ss_pred HHHHHHHHHh--------cCCCCEEEECCCCcHhHHHHH----HHcCCEEEEeeC----CCCCCCCHHHHHHhhc-----
Confidence 9999999987 478999999999999876554 446999999854 111112 677888773
Q ss_pred CCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---c---ccc-cccCccEEEEcCcccCcC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---K---IDV-KEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~---~~~-~~~~~d~~~~s~~K~l~g 257 (452)
+++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. + ++. ...+.++++.|++|+ +|
T Consensus 157 -~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~ 233 (376)
T 2dou_A 157 -REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGL-WLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKS-YN 233 (376)
T ss_dssp -HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHH-HT
T ss_pred -cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCC-EEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhh-cC
Confidence 57899999999999999987 5678899999999 7999999986432 1 122 122457889999997 55
Q ss_pred CCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 258 PPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 258 ~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
++| +|+++.++++++. + ... ...+..+.+...+.++.++++.... .++..+++++++++++.
T Consensus 234 ~~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~ 297 (376)
T 2dou_A 234 LAGFRLGFALGSEEALAR-L-ERV-----------KGVIDFNQYAGVLRMGVEALKTPKE---VVRGYARVYRERALGMA 297 (376)
T ss_dssp CGGGCCEEEEECHHHHHH-H-HHH-----------HHHHCCCSCHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHH
T ss_pred ChhheeEEEecCHHHHHH-H-HHH-----------HHhcccCCCHHHHHHHHHHHhCcHH---HHHHHHHHHHHHHHHHH
Confidence 455 7999988877764 1 111 0111122333344444444433111 46677888888899999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
+.|.+. +.+..+.. +.++++.++ .+.+..++.+.|.++ ||.+..+..+.. ..+++
T Consensus 298 ~~L~~~--~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~l~~~-gi~v~~g~~f~~--------------~~~~~ 352 (376)
T 2dou_A 298 EALKGV--LSLLPPRA--TMYLWGRLP------EGVDDLEFGLRLVER-GVALAPGRGFGP--------------GGKGF 352 (376)
T ss_dssp HHHTTT--SEECCCCB--SSEEEEECC------TTCCHHHHHHHHHHT-TEECEEGGGGCG--------------GGTTE
T ss_pred HHHHHh--cCccCCCe--eEEEEEECC------CCCCHHHHHHHHHHC-CEEEcCchhhCC--------------CCCCe
Confidence 988775 55544433 567888886 244667899999876 999987655421 23579
Q ss_pred EEecccccCCHHHHHHHHHHHHHHH
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+|++++. +++++++++++|++++
T Consensus 353 ~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 353 VRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp EEEECCS--CHHHHHHHHHHHHHTC
T ss_pred EEEEecC--CHHHHHHHHHHHHHHh
Confidence 9999985 7899999999998764
No 89
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.97 E-value=3.6e-29 Score=245.18 Aligned_cols=343 Identities=11% Similarity=0.051 Sum_probs=239.5
Q ss_pred CHHHHHhh----hccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC-----
Q 012991 25 SEAEIRDE----FSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN----- 94 (452)
Q Consensus 25 ~~~~ir~~----~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----- 94 (452)
+++.+|.. |...++.++.|+.+... +.|+.+.+++.+.+... ...|+ . .. .++++.++++++
T Consensus 6 ~~~~~~~~g~~~~d~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~----~~~y~--~-~~-~~lr~~la~~~~~~~~~ 77 (377)
T 3fdb_A 6 SIEDLRARNTMKWTRYGQGVLPLWVAESDFSTCPAVLQAITDAVQRE----AFGYQ--P-DG-SLLSQATAEFYADRYGY 77 (377)
T ss_dssp CHHHHHHTCCHHHHSSCTTSEECCSSCCCSCCCHHHHHHHHHHHHTT----CCSSC--C-SS-CCHHHHHHHHHHHHHCC
T ss_pred hHHHhcCCCCceeeccCCCeeeecccCCCCCCCHHHHHHHHHHHHcC----CCCCC--C-CC-HHHHHHHHHHHHHHhCC
Confidence 35555554 33467889999887655 56788999998877531 11121 1 22 556666666665
Q ss_pred -CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH
Q 012991 95 -ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI 173 (452)
Q Consensus 95 -~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 173 (452)
++ ++++++|+|+|+|+..++.++ .++||+|+++.++|++....+ ...|.+++.++.. .+ +
T Consensus 78 ~~~-~~~i~~t~g~~~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~----~~--~ 138 (377)
T 3fdb_A 78 QAR-PEWIFPIPDVVRGLYIAIDHF--------TPAQSKVIVPTPAYPPFFHLL----SATQREGIFIDAT----GG--I 138 (377)
T ss_dssp CCC-GGGEEEESCHHHHHHHHHHHH--------SCTTCCEEEEESCCTHHHHHH----HHHTCCEEEEECT----TS--C
T ss_pred CCC-HHHEEEeCChHHHHHHHHHHh--------cCCCCEEEEcCCCcHhHHHHH----HHcCCEEEEccCC----CC--C
Confidence 54 689999999999999999987 478999999999999876655 4459999999653 22 4
Q ss_pred -HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc-----cccccc---
Q 012991 174 -INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKE--- 241 (452)
Q Consensus 174 -~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~--- 241 (452)
+++|+++++ +++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.... ..++..
T Consensus 139 d~~~l~~~l~------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~ 211 (377)
T 3fdb_A 139 NLHDVEKGFQ------AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDA-RVLVDEIHAPLVFDGQHTVAAGVSDTA 211 (377)
T ss_dssp CHHHHHHHHH------TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTC-EEEEECTTGGGBSSSCCCCGGGSCHHH
T ss_pred CHHHHHHHhc------cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEcccchhhcCCCCCcccHHHccC
Confidence 899999994 46889999999999999986 5567777999999 8999999876322 222221
Q ss_pred cCccEEEEcCcccCcCCCC--cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhc
Q 012991 242 IGADFYVSNLHKWFFCPPS--VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEG 318 (452)
Q Consensus 242 ~~~d~~~~s~~K~l~g~~G--~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 318 (452)
.+.++++.|++|+ +|++| +|++++ ++++++. + ... .....++++...+.++.++++...+
T Consensus 212 ~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~--- 274 (377)
T 3fdb_A 212 ASVCITITAPSKA-WNIAGLKCAQIIFSNPSDAEH-W-QQL-----------SPVIKDGASTLGLIAAEAAYRYGTD--- 274 (377)
T ss_dssp HHHEEEEECSTTT-TTCGGGCCEEEECCSHHHHHH-H-HHS-----------CHHHHCCCCHHHHHHHHHHHHHCHH---
T ss_pred CCcEEEEEeChHh-ccCcchhheEEEeCCHHHHHH-H-HHH-----------HHhhcCCCCHHHHHHHHHHHhccHH---
Confidence 2345889999997 45444 787776 4555543 1 110 0001133444444444444443222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCC
Q 012991 319 GIDGIMQRNHEQALKMARMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKD 397 (452)
Q Consensus 319 g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~ 397 (452)
.++.++++++++++++.+.|.+ ++++.+..+.. +.++++.++.. +.+ .++.+.|.+++||.+.++..+..
T Consensus 275 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~-~~~~~~l~~~~gi~v~~g~~~~~- 345 (377)
T 3fdb_A 275 FLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQA--TYLMWIDFRDT-----TIE-GSPSEFFIEKAKVAMNDGAWFGE- 345 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSB--CSEEEEECTTS-----CCC-SCHHHHHHHHHCEECEEGGGGCG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCe--eEEEEEECccc-----CCC-HHHHHHHHHhCCEEecCChhccC-
Confidence 3677888899999999999988 67787766554 55667887621 122 35666666656999987765521
Q ss_pred CCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 398 DGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++. +++++++++++|++++++
T Consensus 346 -------------~~~~~~Ris~~~--~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 346 -------------DGTGFCRLNFAT--SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp -------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHTT
T ss_pred -------------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 246799999984 899999999999998864
No 90
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.97 E-value=1.7e-28 Score=247.78 Aligned_cols=366 Identities=15% Similarity=0.165 Sum_probs=244.3
Q ss_pred CCCHHHHHhhhcc---C----CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchh--hhhhhhHHHHHHHHHHHhHh
Q 012991 23 CISEAEIRDEFSH---H----QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDF--YFNSLRKGILESRAAVKDLI 93 (452)
Q Consensus 23 ~~~~~~ir~~~~~---~----~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~ 93 (452)
.++..++.+++.. . ...+++|+ +.+....+.+.+++.+.... .++... ...+..+..+++++++++++
T Consensus 44 ~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~ 120 (474)
T 1wyu_B 44 EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFAD--LHPYQDPRTAQGALRLMWELGEYLKALT 120 (474)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSS--CCTTSCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHh--cCCCCchhhChHHHHHHHHHHHHHHHHH
Confidence 4555555555432 1 23467888 44554433466666554211 122111 13445678899999999999
Q ss_pred CCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC-----EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 012991 94 NADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND-----TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLA 168 (452)
Q Consensus 94 ~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~-----~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~ 168 (452)
|.+ ..+++|+|||+|+..++.++.... .++|| +|+++.+.|+++..++ ...|.+++.++. +
T Consensus 121 g~~--~~~~~~~ggt~a~~~al~~~~~~~----~~~Gd~~~r~~Vlv~~~~h~~~~~~~----~~~G~~vv~v~~----~ 186 (474)
T 1wyu_B 121 GMD--AITLEPAAGAHGELTGILIIRAYH----EDRGEGRTRRVVLVPDSAHGSNPATA----SMAGYQVREIPS----G 186 (474)
T ss_dssp TCS--EEECCCSSHHHHHHHHHHHHHHHH----HHTTCTTTCCEEEEETTSCTHHHHHH----HHTTCEEEEECB----C
T ss_pred CCC--ceeecChHHHHHHHHHHHHHHHHH----HhcCCccCCCEEEEeCCcChhhHHHH----HHCCCEEEEecC----C
Confidence 996 356788999999988666542110 13555 9999999999987664 456999999954 3
Q ss_pred ChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc-ccHHHHHHHHHHcCCCEEEEecccccCCc-cccccccCcc
Q 012991 169 SEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV-IPVRKLVKICRDEGVDQVFVDAAHAMGSI-KIDVKEIGAD 245 (452)
Q Consensus 169 ~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~-~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~~~~~~~~d 245 (452)
+++.+ +++|++++ ++++++|+++++ |++|.+ .++++|+++|++||+ ++|+|++++.+.. ..+...+++|
T Consensus 187 ~~~~~d~~~L~~~i------~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~-~li~Dea~~~~~~g~~~~~~~g~d 258 (474)
T 1wyu_B 187 PEGEVDLEALKREL------GPHVAALMLTNP-NTLGLFERRILEISRLCKEAGV-QLYYDGANLNAIMGWARPGDMGFD 258 (474)
T ss_dssp TTSSBCHHHHHHHC------STTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTC-EEEEEGGGGGGTTTTCCHHHHTCS
T ss_pred CCCCcCHHHHHHhh------CCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCC-EEEEeCchhhhhccCCCcccCCCc
Confidence 44445 89999999 578999999997 579998 699999999999999 7999999976654 2333445799
Q ss_pred EEEEcCcccCcCCC-----CcEEEEEecCccccCCCCCceeccCCCCccc--------ccccccccCccccccHHHHHHH
Q 012991 246 FYVSNLHKWFFCPP-----SVAFLYCRKSILSSDMHHPVVSHEFGNGLPI--------ESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 246 ~~~~s~~K~l~g~~-----G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~al~~ 312 (452)
++++|+||++++|. |+|++++++++++. +..++... .|..... .....++.+. .++.+++.+
T Consensus 259 i~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~-l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~~~ 333 (474)
T 1wyu_B 259 VVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPY-LPVPLVER-GEEGFYLDFDRPKSIGRVRSFYGNF---LALVRAWAY 333 (474)
T ss_dssp EEECCTTTTTCCCCTTSCCCCCCEEECGGGGGG-CCSCEEEE-CSSCEEEECCCTTCCCCSSSTTSCH---HHHHHHHHH
T ss_pred EEEEeCccccccCCCCCCCCeEEEEEcHHHHHh-CCCCeeec-cCCeeEecccCcccCcccccCcCcH---HHHHHHHHH
Confidence 99999999987764 58999999988765 32122210 0100000 0011122222 334445555
Q ss_pred HHHh-hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeec
Q 012991 313 VSRF-EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIH 391 (452)
Q Consensus 313 ~~~~-~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~ 391 (452)
+... .++++.+.++..++++++.+.|.+. ++++..+... ...+++.++ .+.+..++.+.|.++ ||.++..
T Consensus 334 l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~~~------~~~~~~~l~~~L~~~-Gi~~~~~ 404 (474)
T 1wyu_B 334 IRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPS-MHEFVAQPP------EGFRALDLAKGLLEL-GFHPPTV 404 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSC-CSCEEEBCS------TTCCHHHHHHHHHHT-TCCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCc-ceEEEEEcC------CCCCHHHHHHHHHHC-Ccccccc
Confidence 4422 1256667888999999999999987 7776433211 222344443 245678899999775 9987532
Q ss_pred ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 392 YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+ ....+++|++++..+|.+|+++++++|++++++
T Consensus 405 ~~~---------------~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 405 YFP---------------LIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp SCS---------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred ccc---------------cccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 221 012578999999989999999999999999876
No 91
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.97 E-value=6e-29 Score=246.68 Aligned_cols=351 Identities=13% Similarity=0.117 Sum_probs=238.1
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t~a 110 (452)
.++++|+.+.+. ..|+.+.+++.+.+... ... |.......++++.+++++ |.+ +++ +|++|+|+++|
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~--y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~a 98 (411)
T 2o0r_A 25 IGAVNLGQGFPDEDGPPKMLQAAQDAIAGG----VNQ--YPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEA 98 (411)
T ss_dssp TTCEESSCSSCSSCCCHHHHHHHHHHHHTT----CCS--CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHH
T ss_pred CCeeeccCcCCCCCCCHHHHHHHHHHHhcC----CCC--CCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHH
Confidence 568899888765 46677999998877531 111 111222345555555554 743 356 99999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+.. +..+.+ +++|++++ .+
T Consensus 99 l~~~~~~~--------~~~gd~Vl~~~~~y~~~~~~~----~~~g~~~~~v~~~~~-~~~~~~d~~~l~~~l------~~ 159 (411)
T 2o0r_A 99 IAAAVLGL--------VEPGSEVLLIEPFYDSYSPVV----AMAGAHRVTVPLVPD-GRGFALDADALRRAV------TP 159 (411)
T ss_dssp HHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEEE-TTEEECCHHHHHHHC------CT
T ss_pred HHHHHHHh--------cCCCCEEEEeCCCcHhHHHHH----HHcCCEEEEeecccc-ccCCCCCHHHHHHhh------cc
Confidence 99999987 478999999999999976554 456999999865211 011223 89999998 56
Q ss_pred ceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----cccccc----cCccEEEEcCcccCcCC
Q 012991 190 MIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE----IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~l~g~ 258 (452)
++++|++++++||||.++|. ++|+++|+++|+ ++|+|++++.+.. ..++.. .+.|+++.|++|+ +|+
T Consensus 160 ~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~-~~~ 237 (411)
T 2o0r_A 160 RTRALIINSPHNPTGAVLSATELAAIAEIAVAANL-VVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKM-FNC 237 (411)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHH-TTC
T ss_pred CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhh-cCC
Confidence 89999999999999999875 789999999999 8999999986432 112221 3679999999996 666
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + ... ......+.+...+.++.++++.... .++.++++++++++++.+
T Consensus 238 ~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~~ 301 (411)
T 2o0r_A 238 TGWKIGWACGPAELIAG-V-RAA-----------KQYLSYVGGAPFQPAVALALDTEDA---WVAALRNSLRARRDRLAA 301 (411)
T ss_dssp TTTCEEEEECCHHHHHH-H-HHH-----------HHHHTSCCCTTHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeeCHHHHHH-H-HHH-----------HhhccCCCChHHHHHHHHHHhCChH---HHHHHHHHHHHHHHHHHH
Confidence 77 8999998777664 1 111 0001122333344444455543322 467788889999999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.+. ++.+..+.. +.++++.++.. ...+..++.+.|.+++||.+..+..+..... .+...-.....+++
T Consensus 302 ~L~~~-g~~~~~~~~--g~~~~~~~~~~----~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~---~~~~~~~~~~~~~i 371 (411)
T 2o0r_A 302 GLTEI-GFAVHDSYG--TYFLCADPRPL----GYDDSTEFCAALPEKVGVAAIPMSAFCDPAA---GQASQQADVWNHLV 371 (411)
T ss_dssp HHHHH-TCEECCCCB--SSEEEEECGGG----TCCCHHHHHHHHHHHHSEECEEGGGGSCCC-----------CCGGGCE
T ss_pred HHHHc-CCEecCCCe--eEEEEEecCCC----CCCCHHHHHHHHHHhCCEEEcChhhhCCCcc---ccccccccCCCCeE
Confidence 99987 777665543 56888888621 0135678888876546999977654411000 00000000135799
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
|+++.. +++++++++++|+++++..
T Consensus 372 Ris~~~--~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 372 RFTFCK--RDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp EEECCS--CHHHHHHHHHHHGGGGC--
T ss_pred EEEecC--CHHHHHHHHHHHHHHHhcc
Confidence 999974 8999999999999877543
No 92
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.97 E-value=7.3e-29 Score=247.44 Aligned_cols=354 Identities=14% Similarity=0.092 Sum_probs=239.8
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCC-cEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVG-EISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~-~i~~t~g~t~a 110 (452)
+++++|+.+.+. ..|+.+.+++.+.+... +.....+.......++++.+++++ |.+ +++ +|++|+|+++|
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANSP---DPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTCS---CGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcc---ccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 568899888665 46677999988876431 101112222223455666666664 742 367 99999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC------CChHHH-HHHHHHHHhc
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL------ASEEEI-INEFKKGIEK 183 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~------~~~~~~-~~~l~~~i~~ 183 (452)
+.+++.++ .++||+|+++.+.|++....+ +..|.+++.++.+... ...+.+ +++|++++
T Consensus 114 ~~~~~~~~--------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-- 179 (429)
T 1yiz_A 114 LYATIQGH--------VDEGDEVIIIEPFFDCYEPMV----KAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF-- 179 (429)
T ss_dssp HHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHC--
T ss_pred HHHHHHHh--------cCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeCCcccccccccccCcccCHHHHHHHh--
Confidence 99999987 478999999999999976654 4469999999763210 001223 89999988
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC------ccc-ccc-ccCccEEEEcCc
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS------IKI-DVK-EIGADFYVSNLH 252 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~------~~~-~~~-~~~~d~~~~s~~ 252 (452)
.+++++|++++++||||.++| +++|+++|++||+ ++|+|++++... .++ .+. ..+.|+++.|+|
T Consensus 180 ----~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~s 254 (429)
T 1yiz_A 180 ----NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNV-LCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAG 254 (429)
T ss_dssp ----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHH
T ss_pred ----ccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCc-EEEEeccccccccCCCCCcChhhccCCcCceEEEecch
Confidence 568999999999999999996 8899999999999 899999987522 122 121 346799999999
Q ss_pred ccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH----HHhhcCHHHHHHH
Q 012991 253 KWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV----SRFEGGIDGIMQR 326 (452)
Q Consensus 253 K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~----~~~~~g~~~~~~~ 326 (452)
|+ +|++| +|++++++++++. + ... ......+.+...+.++.++++.. ......+++++++
T Consensus 255 K~-~~~~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 320 (429)
T 1yiz_A 255 KT-FSLTGWKIGWAYGPEALLKN-L-QMV-----------HQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGE 320 (429)
T ss_dssp HH-HTCGGGCCEEEESCHHHHHH-H-HHH-----------HHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHH
T ss_pred hc-cCCCCcceEEEEeCHHHHHH-H-HHH-----------HhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 96 66667 8999998877664 1 111 00011233333444444455441 1002247788888
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc------cCChhhHHHHHHHHhhhcceEeeecccCCCCCCC
Q 012991 327 NHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQ 400 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~ 400 (452)
++++++++.+.|.+. ++.+..+.. +.++++.++.... .....+..++.+.|.+++||.+..+..+....
T Consensus 321 ~~~~~~~l~~~L~~~-g~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~-- 395 (429)
T 1yiz_A 321 LMAKRDYMASFLAEV-GMNPTVPQG--GYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP-- 395 (429)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEECSB--SSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGG--
T ss_pred HHHHHHHHHHHHHhC-CCcccCCCc--ceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCc--
Confidence 999999999999887 777654433 6788888863100 00013567888888645699997654432100
Q ss_pred CCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 401 PQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 401 ~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
. . ...++++|++++. ++++|++++++|+++++
T Consensus 396 ----~--~-~~~~~~iRis~~~--~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 396 ----N--K-HLGEDFVRYCFFK--KDENLQKAAEILRKWKG 427 (429)
T ss_dssp ----G--G-GGTTTEEEEECCS--CHHHHHHHHHHHHHHSC
T ss_pred ----c--c-CCCCCeEEEEecC--CHHHHHHHHHHHHHhcc
Confidence 0 0 0125799999984 89999999999998864
No 93
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.97 E-value=1.3e-30 Score=263.63 Aligned_cols=353 Identities=12% Similarity=0.092 Sum_probs=243.9
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCc----EEEecChh
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDD-FYF--NSLRKGILESRAAVKDLINADDVGE----ISLVDNAT 108 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~----i~~t~g~t 108 (452)
+..+.|..+ .++.|+.|++++.+.+.... ++|+. ++. ....+..+.+++++++++|++ .++ |++++|+
T Consensus 44 ~~~i~L~a~-e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~-~~~~~~~V~~~sGs- 120 (483)
T 1rv3_A 44 RVGLELIAS-ENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLD-PQCWGVNVQPYSGS- 120 (483)
T ss_dssp HSSEECCTT-CCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCC-TTTEEEECCCSSHH-
T ss_pred hcCeEEEcC-CCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCC-cccCceEEEECCcH-
Confidence 567888644 45778889999988765422 22322 111 233566778889999999996 443 5666555
Q ss_pred HHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHH----HHhcC--cEEEEEeCCCCCC-ChHHH-HHHHHHH
Q 012991 109 TAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAY----VTRAG--GSVVEVQLPFPLA-SEEEI-INEFKKG 180 (452)
Q Consensus 109 ~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~----a~~~g--~~v~~~~~~~~~~-~~~~~-~~~l~~~ 180 (452)
+++..++.++ +++||+|++++++|.++...+... ++..| .++..+ +.+ +++.+ +++|+++
T Consensus 121 ~an~~~~~al--------l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~----~~~~~~~~iD~d~le~~ 188 (483)
T 1rv3_A 121 PANFAVYTAL--------VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAY----KVNPDTGYIDYDRLEEN 188 (483)
T ss_dssp HHHHHHHHHH--------TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEE----CBCTTTCSBCHHHHHHH
T ss_pred HHHHHHHHHh--------cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEEC----ccccCCCcCCHHHHHHH
Confidence 8888888876 589999999999998865332100 01123 344444 223 23445 8999999
Q ss_pred HhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccccccc---CccEEEEcCcccCcC
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEI---GADFYVSNLHKWFFC 257 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~g 257 (452)
+++ ++|++|++ +++|++ .+.|+++|.++|+++|+ ++++|++|+.|....+.... ++|++++|+||++.|
T Consensus 189 i~~-----~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~-~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~G 260 (483)
T 1rv3_A 189 ARL-----FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGA-YLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRG 260 (483)
T ss_dssp HHH-----HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTC-EEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCC
T ss_pred Hhh-----cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCC-EEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCC
Confidence 952 57899999 888887 88999999999999999 89999999887665544433 689999999999999
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCC----cc--cc----cccccccCccccccHHHHHHHHHHhhcCHHHHHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNG----LP--IE----SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~----~~--~~----~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~ 327 (452)
|.| |++++++++... . .. .|.. .. .+ ....|+++...+.++..+++..... +++.+.+++
T Consensus 261 prg-G~i~~~~~~~~~--~-~~----~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~--~~~~~~~~~ 330 (483)
T 1rv3_A 261 CRA-GMIFYRRGVRSV--D-PK----TGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP--EFKEYQRQV 330 (483)
T ss_dssp CSC-EEEEEECSBCC--------------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSH--HHHHHHHHH
T ss_pred CCc-eEEEEcchhhhh--c-cc----cCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhCh--hHHHHHHHH
Confidence 998 999999875421 0 00 0000 00 00 0113667776777777788776532 678899999
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 328 HEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
.++++++.+.|.+. |+++..+.. ...++++.+.. .+.+..++.+.|.+ .||.+...+.+.. .+
T Consensus 331 ~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~v~~~~-----~g~~~~~~~~~L~~-~gI~v~~~~~pg~---~~------ 393 (483)
T 1rv3_A 331 VANCRALSAALVEL-GYKIVTGGS-DNHLILVDLRS-----KGTDGGRAEKVLEA-CSIACNKNTCPGD---KS------ 393 (483)
T ss_dssp HHHHHHHHHHHHHT-TCEEGGGSC-SSSEEEEEGGG-----GTCCHHHHHHHHHH-TTEECEEECCSSC---SC------
T ss_pred HHHHHHHHHHHHhc-CCEeccCCC-CCceEEEeccC-----CCCCHHHHHHHHHh-CCcEEecCCCCCC---Cc------
Confidence 99999999999987 887765432 23466666641 13467778888865 6999873222211 00
Q ss_pred CCCCccceEEecccccCC----HHHHHHHHHHHHHHHhc
Q 012991 408 KDGIITGYARISHQVYNT----LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t----~~di~~l~~~l~~~~~~ 442 (452)
...++++|||++.++| ++|+++++++|+++++.
T Consensus 394 --~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 394 --ALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp --TTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred --CCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 1235799999998888 99999999999999865
No 94
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=2e-29 Score=251.29 Aligned_cols=354 Identities=10% Similarity=0.027 Sum_probs=241.3
Q ss_pred CCCeEEeccCCCC---CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC--CCCcEEEecCh
Q 012991 37 QHGVARINNGSFG---SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD--DVGEISLVDNA 107 (452)
Q Consensus 37 ~~~~~~l~~~~~~---~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~--~~~~i~~t~g~ 107 (452)
++.++.|..+.+. ..++.+.+++.+.+... +.....|.......++++.+++++ |.+ ++++|++|+|+
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~---~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~ 118 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKE---YHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGS 118 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHS---HHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHH
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhc---chhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccH
Confidence 4678899776543 35677899988877541 111112323334567777788877 831 36899999999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 186 (452)
++|+.+++.++ .++||+|++++++|++....+ +..|.+++.++.+ .++ + +++|++++++...
T Consensus 119 ~~al~~~~~~l--------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~~~----~~~-~d~~~l~~~l~~~~~ 181 (425)
T 1vp4_A 119 QQALDLIGKLF--------LDDESYCVLDDPAYLGAINAF----RQYLANFVVVPLE----DDG-MDLNVLERKLSEFDK 181 (425)
T ss_dssp HHHHHHHHHHH--------CCTTCEEEEEESCCHHHHHHH----HTTTCEEEEEEEE----TTE-ECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCCCCEEEEeCCCcHHHHHHH----HHcCCEEEEeccC----CCC-CCHHHHHHHHHhhhh
Confidence 99999999987 478999999999999876554 4569999988652 223 4 7888888853100
Q ss_pred --CCCceEEE-EEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccccc---ccCccEEEEcCcc
Q 012991 187 --DGKMIRLA-IIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVK---EIGADFYVSNLHK 253 (452)
Q Consensus 187 --~~~~~~lv-~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~---~~~~d~~~~s~~K 253 (452)
++.++++| ++++++||||.++| +++|+++|+++|+ ++|+|++++.+.. ..++. ..+.++++.|++|
T Consensus 182 ~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK 260 (425)
T 1vp4_A 182 NGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDL-FIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK 260 (425)
T ss_dssp TTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTT
T ss_pred cccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCC-EEEEECCCccccCCCCCCcCHHHhCCCCCEEEEecccc
Confidence 01378888 58999999999987 4578899999999 7999999976432 12221 2245788999999
Q ss_pred cCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 254 WFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 254 ~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
++ | +| +|++++++++++. + ... ...+..+.+...+.++..+++... ....++.+++++++++
T Consensus 261 ~~-~-~G~r~G~~~~~~~~~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~ 324 (425)
T 1vp4_A 261 VL-A-PGLRIGMVAGSKEFIRK-I-VQA-----------KQSADLCSPAITHRLAARYLERYD-LLEQLKPTIELYRRKR 324 (425)
T ss_dssp TT-C-GGGCEEEEECCHHHHHH-H-HHH-----------HHHHHSSCCHHHHHHHHHHHHHSC-HHHHTHHHHHHHHHHH
T ss_pred cc-c-cccceEEEeeCHHHHHH-H-HHH-----------hhhhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence 74 5 55 6999998877664 1 111 001112233334444444444320 0113567778888899
Q ss_pred HHHHHHHHHH-c---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANA-W---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 332 ~~l~~~L~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
+++.+.|.+. + ++.+..+.. +.++++.++ .+.+..++.+.|.++ ||.+..+..+...
T Consensus 325 ~~l~~~L~~~~~~~~g~~~~~~~~--g~~~~~~~~------~~~~~~~l~~~l~~~-gi~v~~g~~f~~~---------- 385 (425)
T 1vp4_A 325 TVMLNALEEYFSDIPGVKWVKSEG--GLFIWLTLP------EGFDTWEMFEYAKRK-KVFYVPGRVFKVY---------- 385 (425)
T ss_dssp HHHHHHHHHHSTTSTTCEECCCSB--SSEEEEECC------TTCCTTTTHHHHHHH-TEECEEGGGGCTT----------
T ss_pred HHHHHHHHHhCCCCCceEEecCCc--cEEEEEEcC------CCCCHHHHHHHHHHC-CCEEECchhhcCC----------
Confidence 9999999875 4 566655543 678899886 234556788888776 9999876554221
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHHhcccccccc
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQVCQML 449 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~~~~~~ 449 (452)
...++++|++++.. +++++++++++|+++++.....+.|
T Consensus 386 --~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~~~~~~ 424 (425)
T 1vp4_A 386 --DEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYGKEKHL 424 (425)
T ss_dssp --CCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhhccc
Confidence 12357999999874 8999999999999998765444443
No 95
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.97 E-value=1.1e-28 Score=242.56 Aligned_cols=335 Identities=14% Similarity=0.121 Sum_probs=233.3
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH----hCCC-CCC-cEEEecChhHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL----INAD-DVG-EISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~-~~~-~i~~t~g~t~a 110 (452)
.++++|+.+.+. ..|+.+.+++.+.+.. +...|. ......++++.++++ +|.+ +++ ++++|+|+++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~y~--~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 103 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHVAQ----GANQYA--PMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEA 103 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHHT----TCCSCC--CTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHHh----hccCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHH
Confidence 568899888765 4667799999887653 111121 112244555556655 4743 367 99999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++ .++||+|+++.++|++....+ +..|.+++.++.+.. ++.+ +++|++++ .+
T Consensus 104 ~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~~---~~~~d~~~l~~~l------~~ 162 (386)
T 1u08_A 104 LYAAITAL--------VRNGDEVICFDPSYDSYAPAI----ALSGGIVKRMALQPP---HFRVDWQEFAALL------SE 162 (386)
T ss_dssp HHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECCTT---TCCCCHHHHHHHC------CT
T ss_pred HHHHHHHh--------CCCCCEEEEeCCCchhHHHHH----HHcCCEEEEeecCcc---cCcCCHHHHHHhh------cc
Confidence 99999987 478999999999999876544 556999999975311 1223 89999988 57
Q ss_pred ceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc------cc-ccc-ccCccEEEEcCcccCcCC
Q 012991 190 MIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI------KI-DVK-EIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~------~~-~~~-~~~~d~~~~s~~K~l~g~ 258 (452)
++++|++++++||||.++| +++|+++|++||+ ++|+|++++.... ++ .+. ..+.|+++.|+||+ +|+
T Consensus 163 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~-~~~ 240 (386)
T 1u08_A 163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEI-FVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKT-YHM 240 (386)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCC-EEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHH-TTC
T ss_pred cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCc-EEEEEccccccccCCCCCcChhcccCccCcEEEEecchhh-cCC
Confidence 8999999999999999986 5788999999999 7999999976321 12 121 24678999999997 566
Q ss_pred CC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 259 ~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+| +|++++++++++. + .... .....+.+...+.++.++++... ..++.++++++++++++.+
T Consensus 241 ~G~r~G~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~l~~ 304 (386)
T 1u08_A 241 TGWKVGYCVAPAPISAE-I-RKVH-----------QYLTFSVNTPAQLALADMLRAEP---EHYLALPDFYRQKRDILVN 304 (386)
T ss_dssp GGGCCEEEECCHHHHHH-H-HHHH-----------HHHTSSCCHHHHHHHHHHHHHCT---HHHHTHHHHHHHHHHHHHH
T ss_pred cccceEEEEcCHHHHHH-H-HHHH-----------HhhccCCChHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHH
Confidence 66 8999998877664 1 1110 00012233333344444444321 1467778888899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.+. ++++..+.. +.++++.++.. ...+..++.+.|.+++||.+..+..+... ...++++
T Consensus 305 ~L~~~-g~~~~~~~~--g~~~~~~~~~~----~~~~~~~~~~~l~~~~gi~v~~g~~f~~~------------~~~~~~i 365 (386)
T 1u08_A 305 ALNES-RLEILPCEG--TYFLLVDYSAV----STLDDVEFCQWLTQEHGVAAIPLSVFCAD------------PFPHKLI 365 (386)
T ss_dssp HTTSS-SCEECCCCB--SSEEEEECTTT----CCSCHHHHHHHHHHHSCEECEEGGGGCSS------------CCCSCEE
T ss_pred HHHHC-CCeecCCCc--eEEEEEecCCC----CCCCHHHHHHHHHHhCCEEEeCchHhCCC------------CCCCCEE
Confidence 99876 777665543 67888888621 01456788888865569999766543210 1235799
Q ss_pred EecccccCCHHHHHHHHHHHHH
Q 012991 417 RISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~ 438 (452)
|++++. ++++|++++++|++
T Consensus 366 Ris~~~--~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 366 RLCFAK--KESTLLAAAERLRQ 385 (386)
T ss_dssp EEECCS--CHHHHHHHHHHHTT
T ss_pred EEEEcC--CHHHHHHHHHHHhh
Confidence 999984 89999999999864
No 96
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=2e-28 Score=241.79 Aligned_cols=337 Identities=15% Similarity=0.141 Sum_probs=230.1
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH----hCCC-CCCcEEEecChhHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL----INAD-DVGEISLVDNATTA 110 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~-~~~~i~~t~g~t~a 110 (452)
++.++.|+.+.+. +.|+.+.+++.+.+... .+.....|.......++++.++++ +|.+ ++++|++|+|+|+|
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIKELVTDY--DSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHHHHHHHS--CHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHHHHHhcC--CccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 3578999888765 56788999998887651 111112232233334555555555 4532 36899999999999
Q ss_pred HHHHHHHhhcccccCCCCCC-CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
+.+++.++ +++| |+|+++++.|++....+ +..|.+++.++++. +...+ +++|++++ .
T Consensus 112 l~~~~~~l--------~~~g~d~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~---~~~~~d~~~l~~~l------~ 170 (398)
T 3ele_A 112 LSICFRAL--------TSDAYDEFITIAPYFPEYKVFV----NAAGARLVEVPADT---EHFQIDFDALEERI------N 170 (398)
T ss_dssp HHHHHHHH--------CCSTTCEEEEESSCCTHHHHHH----HHTTCEEEEECCCT---TTSSCCHHHHHHTC------C
T ss_pred HHHHHHHH--------cCCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEecCC---cCCcCCHHHHHHHh------C
Confidence 99999987 4889 99999999999876554 45699999995421 12233 89999998 5
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHH------cCCCEEEEecccccCC-----ccccccccCccEEEEcCccc
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRD------EGVDQVFVDAAHAMGS-----IKIDVKEIGADFYVSNLHKW 254 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~------~~~~~~ivD~a~~~g~-----~~~~~~~~~~d~~~~s~~K~ 254 (452)
+++++|++++++||||.++| +++|+++|++ ||+ ++|+|++|+... .+......+.++++.|+||+
T Consensus 171 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 249 (398)
T 3ele_A 171 AHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPI-FIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKS 249 (398)
T ss_dssp TTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCC-EEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTT
T ss_pred cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCe-EEEEeccccccccCCCCcCChHhhcCCeEEEEehhhc
Confidence 68999999999999999998 5667789999 999 899999987532 22222334567899999997
Q ss_pred CcCCCC--cEEEEEecCcccc-CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 012991 255 FFCPPS--VAFLYCRKSILSS-DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQA 331 (452)
Q Consensus 255 l~g~~G--~G~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~ 331 (452)
+|++| +|++++++++... .+....... .......+++. .+..++...+.. + ..++++++++
T Consensus 250 -~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~a~~~~l~~---~--~~~~~~~~~~ 313 (398)
T 3ele_A 250 -LSLPGERIGYVLVPDEVYDKAELYAAVCGA-------GRALGYVCAPS---LFQKMIVKCQGA---T--GDINAYKENR 313 (398)
T ss_dssp -SSCTTTCCEEEECCTTSTTHHHHHHHHHHH-------HHHTTCCCSCH---HHHHHHTTCTTC---C--CCHHHHHHHH
T ss_pred -CCCccceeEEEEEcchhhhHHHHHHHHHHH-------hhhccccCCCH---HHHHHHHHHhcC---H--HHHHHHHHHH
Confidence 45444 8999998876542 000000000 00000011111 122222222222 1 1356778889
Q ss_pred HHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 332 LKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 332 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
+++.+.|.++ ++.+..+.. +.++++.++ ..+..++.+.|.+ +||.+.++..+.
T Consensus 314 ~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~l~~-~gi~v~~g~~~~---------------- 366 (398)
T 3ele_A 314 DLLYEGLTRI-GYHCFKPDG--AFYMFVKAL-------EDDSNAFCEKAKE-EDVLIVAADGFG---------------- 366 (398)
T ss_dssp HHHHHHHHHH-TCCEECCSB--SSEEEEECS-------SSCHHHHHHHHHT-TTEECEESGGGT----------------
T ss_pred HHHHHHHHHc-CCeecCCCe--eEEEEEEcC-------CCCHHHHHHHHHH-CCEEEeCccccC----------------
Confidence 9999999887 777666554 566888886 2356788888865 599998766542
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|++++ +++++|++++++|++++++
T Consensus 367 ~~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 367 CPGWVRISYC--VDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp CTTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 2479999997 5999999999999998865
No 97
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.97 E-value=2.3e-28 Score=240.70 Aligned_cols=338 Identities=13% Similarity=0.077 Sum_probs=232.2
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH-HHHHHHhHh----C--CCCCCcEEEecChhH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILE-SRAAVKDLI----N--ADDVGEISLVDNATT 109 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~----~--~~~~~~i~~t~g~t~ 109 (452)
+.+++|+.+..+ ..|+.+.+++.+.+.. ....|... ..+ +++.+++++ | ++ +++|++|+|+++
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~y~~~----~~~~lr~~la~~l~~~~g~~~~-~~~v~~t~g~~~ 98 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMH----GVFGYSRW----KNDEFLAAIAHWFSTQHYTAID-SQTVVYGPSVIY 98 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTT----CCCCCCCS----CCHHHHHHHHHHHHHHSCCCCC-GGGEEEESCHHH
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhC----CCCCCCCC----ChHHHHHHHHHHHHHhcCCCCC-HHHEEEcCCHHH
Confidence 468888877664 4667799999887642 11122221 334 556666654 6 43 689999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCC
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~ 188 (452)
|+.+++.++ .++||+|+++.++|++....+ ...|.+++.++.+.. +....+ +++|+++++ .
T Consensus 99 al~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~~~-~~~~~~d~~~l~~~l~-----~ 160 (390)
T 1d2f_A 99 MVSELIRQW--------SETGEGVVIHTPAYDAFYKAI----EGNQRTVMPVALEKQ-ADGWFCDMGKLEAVLA-----K 160 (390)
T ss_dssp HHHHHHHHS--------SCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEECEEC-SSSEECCHHHHHHHHT-----S
T ss_pred HHHHHHHHh--------cCCCCEEEEcCCCcHHHHHHH----HHCCCEEEEeecccC-CCccccCHHHHHHHhc-----c
Confidence 999999976 478999999999999876654 446999999865311 001123 899999994 2
Q ss_pred CceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccccCc---cEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKEIGA---DFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~~~~---d~~~~s~~K~l~g~ 258 (452)
.++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. ..++..+.. |. +.|++|+ +|+
T Consensus 161 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~-~~~ 237 (390)
T 1d2f_A 161 PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGV-RVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKS-FNI 237 (390)
T ss_dssp TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTC-EEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHH-HTC
T ss_pred CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHh-hcc
Confidence 47999999999999999988 7889999999999 8999999986432 223332322 66 8999997 555
Q ss_pred CC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 259 ~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
+| +|+++++ +++++. + .... .+ ....++++...+.++.++++...+ .++.++++++++++++.
T Consensus 238 ~G~r~G~~~~~~~~~~~~-~-~~~~---~~------~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~ 303 (390)
T 1d2f_A 238 PALTGAYGIIENSSSRDA-Y-LSAL---KG------RDGLSSPSVLALTAHIAAYQQGAP---WLDALRIYLKDNLTYIA 303 (390)
T ss_dssp GGGCCEEEEECSHHHHHH-H-HHHH---HT------TSCCCSCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHH
T ss_pred cChhheEEEECCHHHHHH-H-HHHH---hh------hcccCCCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHH
Confidence 55 6999885 455543 1 1110 00 000124444444444445553222 36777888899999999
Q ss_pred HHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 336 RMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 336 ~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
+.|.+ ++++.+..+.. +.++++.++. .+.+..++.+.|.+++||.+..+..+.. ..++
T Consensus 304 ~~L~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~l~~~l~~~~gi~v~~g~~f~~--------------~~~~ 362 (390)
T 1d2f_A 304 DKMNAAFPELNWQIPQS--TYLAWLDLRP-----LNIDDNALQKALIEQEKVAIMPGYTYGE--------------EGRG 362 (390)
T ss_dssp HHHHHHCSSCCCCCCSB--CSEEEEECGG-----GCCCHHHHHHHHHHTTCEECEEGGGGCG--------------GGTT
T ss_pred HHHHhhCCCCEEecCCc--cEEEEEEccc-----cCCCHHHHHHHHHHHcCEEeeCccccCC--------------CCCC
Confidence 99988 67777665543 4566788762 1146778999997446999987655421 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++|++++. ++++++.+++.|++++++
T Consensus 363 ~~Ris~~~--~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 363 FVRLNAGC--PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp EEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 99999996 688999999999998764
No 98
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.96 E-value=1.4e-28 Score=246.93 Aligned_cols=344 Identities=13% Similarity=0.115 Sum_probs=236.2
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCCCCCcEEEecChhHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NADDVGEISLVDNATTAA 111 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~i~~t~g~t~a~ 111 (452)
++.+++|+.+..+ +.|+.|.+++.+.+....... ....|.......++++++++++ +++ +++|++|+|+++++
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~-~~~~y~~~~g~~~lr~~ia~~~~~g~~~~-~~~i~~t~G~~~al 145 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGLATRE-GYSGYGAEQGQGALREAVASTFYGHAGRA-ADEIFISDGSKCDI 145 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSC-CCCCSTTTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHHH
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhcccc-CCCCCCCCCCcHHHHHHHHHHHHcCCCCC-HHHEEEccCHHHHH
Confidence 6789999988765 577889999998876532211 1122334456788999999998 664 68999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE----------EEEEeCCCCCCChHHHHHHHHHHH
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS----------VVEVQLPFPLASEEEIINEFKKGI 181 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~----------v~~~~~~~~~~~~~~~~~~l~~~i 181 (452)
.++ .++ +++||+|++++|.|++....+.. .|.+ ++.++. +.++.+..+ +
T Consensus 146 ~~~-~~l--------~~~gd~Vl~~~p~~~~~~~~~~~----~g~~g~~~~~~~~~~~~~~~----~~~~~~~~~----~ 204 (449)
T 3qgu_A 146 ARI-QMM--------FGSKPTVAVQDPSYPVYVDTSVM----MGMTGDHNGTGFDGIEYMVC----NPDNHFFPD----L 204 (449)
T ss_dssp HHH-HHH--------HCSSSCEEEEESCCTHHHHHHHH----HTCSCCBCSSSBTTEEEEEC----CGGGTTCCC----G
T ss_pred HHH-HHH--------hCCCCEEEEcCCCChhHHHHHHH----cCCcccccccccceeEEEec----ccccCCcCC----h
Confidence 988 665 47899999999999998766644 4777 888854 222222111 1
Q ss_pred hccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccccc----cCccEEEEc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE----IGADFYVSN 250 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s 250 (452)
.+ .+++++|++++++||||.+++ +++|+++|++||+ ++|+|++|+.... +..+.. .+.++++.|
T Consensus 205 ~~----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 279 (449)
T 3qgu_A 205 SK----AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGS-ILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCS 279 (449)
T ss_dssp GG----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEE
T ss_pred hH----cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCc-EEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEec
Confidence 11 257899999999999999987 6678888999999 8999999986322 222222 245789999
Q ss_pred CcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH
Q 012991 251 LHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH 328 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~ 328 (452)
++|+ +|++| +|++++++++++. ........ .. ........+.+...+.+..++++.... ...+.++++++
T Consensus 280 ~sK~-~g~~G~r~G~~~~~~~~~~~-~~~~~~~~-~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~ 351 (449)
T 3qgu_A 280 FSKY-AGFTGVRLGWTVVPKALKYA-NGEPVHAD-WN---RVMTTCFNGASNIVQAGGLACLQPEGL--KEMNAMIKFYK 351 (449)
T ss_dssp CSGG-GTCTTCCCEEEECCTTCBCT-TSCBHHHH-HH---HHHHHSCCCCCHHHHHHHHHHTSHHHH--HHHHHHHHHHH
T ss_pred chhh-cCCccceeEEEecCHHHHhh-hhhhHHHH-HH---HHhhcccCCCCHHHHHHHHHHHhhcCH--HHHHHHHHHHH
Confidence 9997 55444 8999998887752 00000000 00 000001123333344333334432111 13677888899
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
++++++.+.|.++ ++++..+.. +.++++.++ +.+..++.+.|.+++||.+.++..+..
T Consensus 352 ~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~l~~~~gI~v~pg~~f~~------------ 409 (449)
T 3qgu_A 352 ENAQILKTTFTEM-GFSVYGGDD--APYIWVGFP-------GKPSWDVFAEILERCNIVTTPGSGYGP------------ 409 (449)
T ss_dssp HHHHHHHHHHHHT-TCCEEESSS--SSEEEEECT-------TSCHHHHHHHHHHHHCEECEEGGGGCG------------
T ss_pred HHHHHHHHHHHHC-CCeeeCCCC--eeEEEEECC-------CCCHHHHHHHHHHHCCEEEecchHhCC------------
Confidence 9999999999987 777665543 678888875 345678888887767999987665522
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+++||++.. ++++|++++++|+++++.
T Consensus 410 --~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 410 --AGEGFVRASAFG--SRENILEAVRRFKEAYGK 439 (449)
T ss_dssp --GGTTEEEEECCS--CHHHHHHHHHHHHHHHC-
T ss_pred --CCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 335799999754 899999999999999865
No 99
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.96 E-value=2.6e-28 Score=237.57 Aligned_cols=321 Identities=14% Similarity=0.123 Sum_probs=230.4
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
.++.+++|+.+... +.|+.+.+++.+.+.....++ .....+++++++++++++ ++++++|+|+|+|+.++
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~--------~~~~~~l~~~la~~~~~~-~~~i~~~~g~t~al~~~ 94 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYP--------DVNYRRLNKSIENYLKLK-DIGIVLGNGASEIIELS 94 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCC--------CTTCHHHHHHHHHHHTCC-SCEEEEESSHHHHHHHH
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCC--------CccHHHHHHHHHHHhCCC-cceEEEcCCHHHHHHHH
Confidence 45678999877544 567889999988776432222 234688999999999985 78999999999999998
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEE
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
+.+ + |+|+++.++|++....+ ...|.+++.++++ .++.+ ++++++++ .+ +++
T Consensus 95 ~~~---------~---d~vi~~~~~~~~~~~~~----~~~g~~~~~~~~~----~~~~~~~~~l~~~l------~~-~~~ 147 (361)
T 3ftb_A 95 ISL---------F---EKILIIVPSYAEYEINA----KKHGVSVVFSYLD----ENMCIDYEDIISKI------DD-VDS 147 (361)
T ss_dssp HTT---------C---SEEEEEESCCTHHHHHH----HHTTCEEEEEECC----TTSCCCHHHHHHHT------TT-CSE
T ss_pred HHH---------c---CcEEEecCChHHHHHHH----HHcCCeEEEeecC----cccCCCHHHHHHhc------cC-CCE
Confidence 873 3 89999999999876655 4469999999653 22223 68999988 45 899
Q ss_pred EEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc--c---cc-cccCccEEEEcCcccCcCCCC--cE
Q 012991 194 AIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK--I---DV-KEIGADFYVSNLHKWFFCPPS--VA 262 (452)
Q Consensus 194 v~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~--~---~~-~~~~~d~~~~s~~K~l~g~~G--~G 262 (452)
|++++++||||.++| +++|+++|++||+ ++|+|++++.+... . .. ...+.++++.|++|+ +|++| +|
T Consensus 148 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~g 225 (361)
T 3ftb_A 148 VIIGNPNNPNGGLINKEKFIHVLKLAEEKKK-TIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKF-FAMPGIRFG 225 (361)
T ss_dssp EEEETTBTTTTBCCCHHHHHHHHHHHHHHTC-EEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSST-TSCGGGCCE
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHhhhcCC-EEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhh-cCCCCccee
Confidence 999999999999987 5567788889999 89999998754431 1 11 112345778899997 45444 68
Q ss_pred EEE-EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 263 FLY-CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 263 ~l~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
+++ .++++.+. + .... ...+++...+.++.++++.. +.++..+++.+++++++.+.|.++
T Consensus 226 ~~~~~~~~~~~~-~-~~~~-------------~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~ 286 (361)
T 3ftb_A 226 YGITNNKEIAAK-I-KAKQ-------------NPWNINCFAEMAAINCLKDT----NYIEESLLWIKKERKRFIEELNKI 286 (361)
T ss_dssp EEEESCHHHHHH-H-HTTS-------------CTTCSCHHHHHHHHHTSSCH----HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEeCCHHHHHH-H-HhhC-------------CCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 877 56666554 1 1110 01234444444444444431 246778888999999999999988
Q ss_pred cCCC-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc
Q 012991 342 WGTS-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420 (452)
Q Consensus 342 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 420 (452)
+++. +..+. ++++++.++ ..+..++.+.|.++ ||.+..+..+.. ..++++|+++
T Consensus 287 ~~~~~~~~~~---~~~~~~~~~-------~~~~~~l~~~l~~~-gi~v~~g~~~~~--------------~~~~~iRis~ 341 (361)
T 3ftb_A 287 GFIKRVFSPH---ANFVLCRLE-------NISGEKLYDSLLKE-DIVIRRCCNFIG--------------LDDSFVRFAI 341 (361)
T ss_dssp SSEEEEECCS---SSEEEEEES-------SSCHHHHHHHHHTT-TEECEECTTSTT--------------CCTTEEEEEC
T ss_pred CCCceecCCC---CeEEEEEcC-------CCCHHHHHHHHHHC-CeEEeeCccCCC--------------CCCCEEEEEc
Confidence 7776 55443 567888886 24677899999876 999987655422 3367999999
Q ss_pred cccCCHHHHHHHHHHHHHHHh
Q 012991 421 QVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 421 ~~~~t~~di~~l~~~l~~~~~ 441 (452)
+ +.+++++++++|+++.+
T Consensus 342 ~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 342 K---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp C---CHHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHHHh
Confidence 7 89999999999998865
No 100
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.96 E-value=1.2e-28 Score=245.37 Aligned_cols=355 Identities=12% Similarity=0.075 Sum_probs=237.2
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CC-CcEEEecChhH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DV-GEISLVDNATT 109 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~-~~i~~t~g~t~ 109 (452)
+.+++.|+.+.+. +.|+.+.+++.+.+... .....|.......++++.+++++ |.+ ++ ++|++|+|+++
T Consensus 27 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~ 102 (422)
T 3fvs_A 27 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGD----FMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYG 102 (422)
T ss_dssp TSCCEECCCSSCSSCCCHHHHHHHHHHHHSC----GGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHH
T ss_pred cCCceEeCCCCCCCCCCHHHHHHHHHHHhCC----CccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHH
Confidence 4678999988866 56788999998877531 11112222223344555555555 432 24 58999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC--------CChHHH-HHHHHHH
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL--------ASEEEI-INEFKKG 180 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~--------~~~~~~-~~~l~~~ 180 (452)
|+..++.++ +++||+|+++.+.|++....+ ...|.+++.+++.... .....+ +++++++
T Consensus 103 a~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~ 170 (422)
T 3fvs_A 103 ALFTAFQAL--------VDEGDEVIIIEPFFDCYEPMT----MMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGK 170 (422)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTT
T ss_pred HHHHHHHHH--------cCCCCEEEEcCCCchhhHHHH----HHcCCEEEEEecccccccccccccccCCCCCHHHHHhh
Confidence 999999987 589999999999999876554 4569999999764200 011223 8899988
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCC----ccccccc----cCccEEEE
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGS----IKIDVKE----IGADFYVS 249 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~----~~~~~~~----~~~d~~~~ 249 (452)
+ .+++++|++++++||||.++| +++|+++|++||+ ++|+|++|+... ...++.. .+.++++.
T Consensus 171 ~------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 243 (422)
T 3fvs_A 171 F------TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDV-VCITDEVYQWMVYDGHQHISIASLPGMWERTLTIG 243 (422)
T ss_dssp C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred c------CCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCc-EEEEEccchhhccCCCCCCChhhcccccCcEEEEe
Confidence 8 568999999999999999994 8889999999999 899999997532 2222222 24558889
Q ss_pred cCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH----HhhcCHHHH
Q 012991 250 NLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS----RFEGGIDGI 323 (452)
Q Consensus 250 s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----~~~~g~~~~ 323 (452)
|++|+ +|++| +|+++++++++.. + ... ......+.+...+.++.++++... .....++.+
T Consensus 244 S~sK~-~g~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 309 (422)
T 3fvs_A 244 SAGKT-FSATGWKVGWVLGPDHIMKH-L-RTV-----------HQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQF 309 (422)
T ss_dssp EHHHH-HTCGGGCCEEEECCHHHHHH-H-HHH-----------HHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHH
T ss_pred cchhc-cCCccceEEEEEeCHHHHHH-H-HHH-----------HhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHH
Confidence 99997 55555 7999888877664 1 111 000012333344444444444310 012246788
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCcc-ccC------ChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 324 MQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRL-RVM------GEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
+++++++++++.+.|.++ ++.+..+.. +.++++.++... ... +.....++.+.|.+++||.+.++..+..
T Consensus 310 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~ 386 (422)
T 3fvs_A 310 PQAMQRCRDHMIRSLQSV-GLKPIIPQG--SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYS 386 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCEEEBCSB--SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHc-CCeecCCCe--eeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcC
Confidence 889999999999999887 777655544 677887764200 000 0000457777766656999987665421
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.. ......+++|+|++. ++++|++++++|++++++
T Consensus 387 ~~---------~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 387 VP---------HQKHFDHYIRFCFVK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HH---------HHTTSCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred Cc---------CCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 00 000235799999986 999999999999998754
No 101
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.96 E-value=1.6e-28 Score=239.55 Aligned_cols=336 Identities=10% Similarity=0.074 Sum_probs=234.2
Q ss_pred CCHHHHHhhhccCCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEE
Q 012991 24 ISEAEIRDEFSHHQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEIS 102 (452)
Q Consensus 24 ~~~~~ir~~~~~~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~ 102 (452)
.++..+.+.+...++.+++|+.+..+ ..|+.+.+++.+.+.... .+. .....+++++++++++++ +++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~-------~y~-~~~~~~l~~~la~~~~~~-~~~v~ 80 (364)
T 1lc5_A 10 GNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIE-------RYP-DADYFHLHQALARHHQVP-ASWIL 80 (364)
T ss_dssp CCCHHHHHHHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTGGGGG-------SCC-CTTCHHHHHHHHHHHTSC-GGGEE
T ss_pred ccHHHHHHhcCCCccceEEeccccCCCCCCHHHHHHHHHHHHHhh-------cCC-CCCHHHHHHHHHHHHCcC-HHHEE
Confidence 34445555565445678899877643 356778888887654311 121 124688999999999985 68999
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH--HHHHHHH
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI--INEFKKG 180 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~--~~~l~~~ 180 (452)
+|+|+++++.+++.++ +||+|+++.++|++....+ +..|.+++.++.. ..+.+ ++++.+.
T Consensus 81 ~~~g~~~al~~~~~~~----------~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~~----~~~~~~~l~~~~~~ 142 (364)
T 1lc5_A 81 AGNGETESIFTVASGL----------KPRRAMIVTPGFAEYGRAL----AQSGCEIRRWSLR----EADGWQLTDAILEA 142 (364)
T ss_dssp EESSHHHHHHHHHHHH----------CCSEEEEEESCCTHHHHHH----HHTTCEEEEEECC----GGGTTCCCTTHHHH
T ss_pred ECCCHHHHHHHHHHHc----------CCCeEEEeCCCcHHHHHHH----HHcCCeEEEEeCC----cccccchhHHHHHh
Confidence 9999999999999854 4699999999999876554 4569999999653 11111 2434444
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----cccc-cccCccEEEEcCc
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDV-KEIGADFYVSNLH 252 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~-~~~~~d~~~~s~~ 252 (452)
+ ++++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+.. .++. ...+.++++.|+|
T Consensus 143 ~------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 215 (364)
T 1lc5_A 143 L------TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNI-NLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLT 215 (364)
T ss_dssp C------CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEEST
T ss_pred c------cCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCc-EEEEECcChhhccCccchhhHhccCCCEEEEEECc
Confidence 4 467889999999999999998 8899999999999 8999999975432 1222 2346789999999
Q ss_pred ccCcCCCC--cEEEE-EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 253 KWFFCPPS--VAFLY-CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 253 K~l~g~~G--~G~l~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
|+ +|++| +|+++ .++++++. + .... ...+.+...+.++.++++.. ..++..++++++
T Consensus 216 K~-~~~~G~r~G~~~~~~~~~~~~-l-~~~~-------------~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~ 275 (364)
T 1lc5_A 216 KF-YAIPGLRLGYLVNSDDAAMAR-M-RRQQ-------------MPWSVNALAALAGEVALQDS----AWQQATWHWLRE 275 (364)
T ss_dssp TT-TTCTTTCCEEEECCCHHHHHH-H-HHHS-------------CTTCSCHHHHHHHHHGGGCH----HHHHHHHHHHHH
T ss_pred hh-hcCCccceEEEEECCHHHHHH-H-HHhC-------------CCCCCCHHHHHHHHHHHhCc----HHHHHHHHHHHH
Confidence 97 55455 69998 78777654 1 1110 01233333333333333331 146777888889
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+++++.+.|.+++++.+..+ . ++++++.+++ +..++.+.|.++ ||.+..+..+..
T Consensus 276 ~~~~l~~~L~~~~~~~~~~~-~--g~~~~~~~~~--------~~~~l~~~l~~~-gi~v~~g~~~~~------------- 330 (364)
T 1lc5_A 276 EGARFYQALCQLPLLTVYPG-R--ANYLLLRCER--------EDIDLQRRLLTQ-RILIRSCANYPG------------- 330 (364)
T ss_dssp HHHHHHHHHHTSTTEEECCC-S--SSEEEEEESC--------TTCCHHHHHHTT-TEECEECTTSTT-------------
T ss_pred HHHHHHHHHhcCCCCEECCC-C--CeEEEEECCC--------cHHHHHHHHHHC-CcEEeeCcccCC-------------
Confidence 99999999988777776532 2 5677887762 234688888765 999976654421
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+++. +.+|+++++++|+++++.
T Consensus 331 -~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 331 -LDSRYYRVAIR---SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp -CCTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred -CCCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 23579999986 799999999999998754
No 102
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.96 E-value=7.6e-28 Score=235.28 Aligned_cols=321 Identities=14% Similarity=0.087 Sum_probs=229.5
Q ss_pred eEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH------hCCCCCCcEEEecChhHHHH
Q 012991 40 VARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL------INADDVGEISLVDNATTAAA 112 (452)
Q Consensus 40 ~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~i~~t~g~t~a~~ 112 (452)
.++|+.+... ..|+.+.+++.+.+..... ....+..... .++++.++++ ++++ +++|++|+|+++++.
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~---~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIAT---ELNRYPERDA-VELRDELAAYITKQTGVAVT-RDNLWAANGSNEILQ 106 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGG---GTTSCCCTTC-HHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhccc---ccccCCCccH-HHHHHHHHHhhhhcccCCCC-hHhEEECCChHHHHH
Confidence 3788877654 4677799999888765311 1111211122 4677777777 4554 689999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
+++.++ .++||+|++++++|++....+ ...|.+++.++. ++++.+ ++++++++++ .++
T Consensus 107 ~~~~~l--------~~~gd~Vl~~~~~y~~~~~~~----~~~g~~~~~v~~----~~~~~~d~~~l~~~i~~-----~~~ 165 (369)
T 3cq5_A 107 QLLQAF--------GGPGRTALGFQPSYSMHPILA----KGTHTEFIAVSR----GADFRIDMDVALEEIRA-----KQP 165 (369)
T ss_dssp HHHHHH--------CSTTCEEEEEESSCTHHHHHH----HHTTCEEEEEEC----CTTSSCCHHHHHHHHHH-----HCC
T ss_pred HHHHHh--------cCCCCEEEEcCCChHHHHHHH----HHcCCEEEEecC----CcCCCCCHHHHHHHhhc-----cCC
Confidence 999987 478999999999999876554 456999999964 222233 8899998852 268
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc---ccc-cccC-ccEEEEcCcccCcCCCC--cEEE
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK---IDV-KEIG-ADFYVSNLHKWFFCPPS--VAFL 264 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~---~~~-~~~~-~d~~~~s~~K~l~g~~G--~G~l 264 (452)
++|++++++||||.+.|.+++.++|+.+++ ++|+|++|+.+... ... ...+ .++++.|+||+ +|++| +|++
T Consensus 166 ~~v~~~~~~nptG~~~~~~~l~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~G~r~G~~ 243 (369)
T 3cq5_A 166 DIVFVTTPNNPTGDVTSLDDVERIINVAPG-IVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKA-FDFAGGRLGYF 243 (369)
T ss_dssp SEEEEESSCTTTCCCCCHHHHHHHHHHCSS-EEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSST-TSCGGGCCEEE
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-EEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHh-cCCcccceEEE
Confidence 899999999999999999999999999999 89999999876532 222 2234 56899999997 55445 6999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. +. .... ..+.+...+.++.++++.. +.++..+++++++++++.+.|.+. ++
T Consensus 244 ~~~~~~~~~-l~-~~~~-------------~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~-g~ 303 (369)
T 3cq5_A 244 VANPAFIDA-VM-LVRL-------------PYHLSALSQAAAIVALRHS----ADTLGTVEKLSVERVRVAARLEEL-GY 303 (369)
T ss_dssp EECTHHHHH-HH-TTSC-------------TTCSCHHHHHHHHHHHHTH----HHHHTHHHHHHHHHHHHHHHHHHH-TC
T ss_pred EeCHHHHHH-HH-HcCC-------------CCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 998877654 21 1100 0123333443344444431 135677888899999999999885 77
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+.. +. ++++++.++ .+..++.+.|.+ +||.+..+ ..++++|++++
T Consensus 304 ~~~~-~~--~~~~~~~~~--------~~~~~l~~~l~~-~gi~v~~~-------------------~~~~~iRis~~--- 349 (369)
T 3cq5_A 304 AVVP-SE--SNFVFFGDF--------SDQHAAWQAFLD-RGVLIRDV-------------------GIAGHLRTTIG--- 349 (369)
T ss_dssp EEEC-CS--SSEEEEECC--------SSHHHHHHHHHH-TTEECBCC-------------------SCTTEEEEECC---
T ss_pred EECC-CC--CeEEEEECC--------CCHHHHHHHHHH-CCEEEEEC-------------------CCCCeEEEEeC---
Confidence 7653 22 568888774 256678888865 59998643 01368999998
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
+++|+++++++|+++++.
T Consensus 350 ~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 350 VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 799999999999998754
No 103
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-28 Score=246.60 Aligned_cols=351 Identities=16% Similarity=0.166 Sum_probs=240.5
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCC-CCCcEEEecChhH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NAD-DVGEISLVDNATT 109 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~i~~t~g~t~ 109 (452)
.+.+++.|..+.+. ..|+.+.+++.+.+... .. ..|....+..++++.+++++ |.+ ++++|++|+|+++
T Consensus 55 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---~~--~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~ 129 (447)
T 3b46_A 55 QGRELINLGQGFFSYSPPQFAIKEAQKALDIP---MV--NQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANE 129 (447)
T ss_dssp TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSG---GG--GSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHH
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhCc---CC--CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHH
Confidence 35678999888654 45677888888776421 11 12222233456677777765 432 2578999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC--------CChHHH-HHHHHHH
Q 012991 110 AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL--------ASEEEI-INEFKKG 180 (452)
Q Consensus 110 a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~--------~~~~~~-~~~l~~~ 180 (452)
|+.+++.++ +++||+|+++++.|++....+ ...|.+++.+++.... ..+..+ +++|+++
T Consensus 130 al~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 197 (447)
T 3b46_A 130 GILSCLMGL--------LNAGDEVIVFEPFFDQYIPNI----ELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKA 197 (447)
T ss_dssp HHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTT
T ss_pred HHHHHHHHH--------cCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEeCCCccccccccccccCcccCHHHHHHh
Confidence 999999987 478999999999999876554 4569999988653110 001223 8999988
Q ss_pred HhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc-----cc-cc--cccCccEEEE
Q 012991 181 IEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI-----KI-DV--KEIGADFYVS 249 (452)
Q Consensus 181 i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~-~~--~~~~~d~~~~ 249 (452)
+ .+++++|++++++||||.+++ +++|+++|++||+ ++|+|++++.... ++ .+ ...+.++++.
T Consensus 198 l------~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~ 270 (447)
T 3b46_A 198 I------TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNV-VIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVG 270 (447)
T ss_dssp C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEE
T ss_pred h------ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCc-EEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEe
Confidence 8 578999999999999999975 7789999999999 8999999875322 11 11 1236789999
Q ss_pred cCcccCcCCCC--cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHH
Q 012991 250 NLHKWFFCPPS--VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQR 326 (452)
Q Consensus 250 s~~K~l~g~~G--~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~ 326 (452)
|++|+ ++++| +|++++ ++++++. + ... ......+.+...+.++.++++.... ++.++.++++
T Consensus 271 S~sK~-~~~~G~riG~~~~~~~~l~~~-l-~~~-----------~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~ 335 (447)
T 3b46_A 271 SAGKS-FAATGWRIGWVLSLNAELLSY-A-AKA-----------HTRICFASPSPLQEACANSINDALK-IGYFEKMRQE 335 (447)
T ss_dssp EHHHH-TTCTTSCCEEEECSCHHHHHH-H-HHH-----------HHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHH
T ss_pred cCchh-cCCcchhhEEEEeCCHHHHHH-H-HHH-----------HhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHH
Confidence 99997 66666 899999 7777664 1 110 0011123344455555556665421 1247788899
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc---------cCChhhHHHHHHHHhhhcceEeeecccCCCC
Q 012991 327 NHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR---------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKD 397 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~ 397 (452)
++++++++.+.|.++ ++++..+.. +.++++.++.... .....+..++++.|.+++||.+.++..+...
T Consensus 336 ~~~~~~~l~~~L~~~-g~~~~~~~~--g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 412 (447)
T 3b46_A 336 YINKFKIFTSIFDEL-GLPYTAPEG--TYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIK 412 (447)
T ss_dssp HHHHHHHHHHHHHHH-TCCEECCSB--SSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCG
T ss_pred HHHHHHHHHHHHHHC-CCeecCCCe--eEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCC
Confidence 999999999999988 777665544 6788888763100 0001356688888875569999765443210
Q ss_pred CCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 398 DGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.. .....+++|+|+.. ++++|++++++|+++
T Consensus 413 ~~---------~~~~~~~iRls~~~--~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 413 EH---------EKAAENLLRFAVCK--DDAYLENAVERLKLL 443 (447)
T ss_dssp GG---------GGGGTTEEEEECCS--CHHHHHHHHHHGGGG
T ss_pred Cc---------cCCCCCEEEEEEeC--CHHHHHHHHHHHHHH
Confidence 00 00125799999985 899999999999873
No 104
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.96 E-value=1.8e-28 Score=245.13 Aligned_cols=356 Identities=13% Similarity=0.145 Sum_probs=235.8
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCc----hhhhhhhhHHHHHHHHHHHhHhC--------CCCCCcEEE
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPD----DFYFNSLRKGILESRAAVKDLIN--------ADDVGEISL 103 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~la~~~~--------~~~~~~i~~ 103 (452)
..++.|+.+......+.+.+++.+....... ++. ....|....+..++++.++++++ ++ ++++++
T Consensus 38 ~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~-~~~v~~ 116 (435)
T 3piu_A 38 NGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFD-PNHLVL 116 (435)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCC-GGGEEE
T ss_pred CCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCC-HHHEEE
Confidence 3588888876666666666666654321100 000 01224444556788899999887 43 689999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+||++|+..++.++ .++||+|+++.+.|++....+. ...|.+++.++... +....+ +++|+++++
T Consensus 117 ~~gg~~a~~~~~~~l--------~~~gd~vl~~~p~~~~~~~~~~---~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~ 183 (435)
T 3piu_A 117 TAGATSANETFIFCL--------ADPGEAVLIPTPYYPGFDRDLK---WRTGVEIVPIHCTS--SNGFQITETALEEAYQ 183 (435)
T ss_dssp EEHHHHHHHHHHHHH--------CCTTCEEEEEESCCTTHHHHTT---TTTCCEEEEEECCG--GGTSCCCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHh--------cCCCCeEEECCCccccHHHHHH---HhcCCEEEEeeCCC--ccCCcCCHHHHHHHHH
Confidence 999999999999987 4789999999999998766553 14699999996531 111123 788888886
Q ss_pred ccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc----cccccc-------------c
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE-------------I 242 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~-------------~ 242 (452)
+....+.++++|++++++||||.++|. ++|+++|++||+ ++|+|++|+.+.. ...... .
T Consensus 184 ~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 262 (435)
T 3piu_A 184 EAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGI-HLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVW 262 (435)
T ss_dssp HHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTGGGCCSSSCCCCHHHHHHC-------CGG
T ss_pred HHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeccccccccCCCCCcCHHHhccccccccccCCC
Confidence 543334589999999999999999875 678888999999 7999999976322 111111 1
Q ss_pred CccEEEEcCcccCcCCCC--cEEEEEecC-ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC
Q 012991 243 GADFYVSNLHKWFFCPPS--VAFLYCRKS-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG 319 (452)
Q Consensus 243 ~~d~~~~s~~K~l~g~~G--~G~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g 319 (452)
+.++++.|++|+ +|.+| +|+++++++ +... + ... .. .++.+.....++.++++....+...
T Consensus 263 ~~~i~i~s~sK~-~g~~G~r~G~~~~~~~~~~~~-~-~~~-----------~~--~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (435)
T 3piu_A 263 QRVHVVYSLSKD-LGLPGFRVGAIYSNDDMVVAA-A-TKM-----------SS--FGLVSSQTQHLLSAMLSDKKLTKNY 326 (435)
T ss_dssp GGEEEEEESSSS-SCCGGGCEEEEEESCHHHHHH-H-HHH-----------GG--GSCCCHHHHHHHHHHHHCHHHHHHH
T ss_pred CCEEEEEeeecc-cCCCceeEEEEEeCCHHHHHH-H-HHH-----------hh--cCCCCHHHHHHHHHHhcChHHHHHH
Confidence 223888999997 45444 799888543 4332 1 110 00 0122223333333333321110113
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 320 IDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
.+..+++++++++++.+.|.+. ++++..+.. +.++++.++.........+..++.+.|.+++||.+.++..+..
T Consensus 327 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--- 400 (435)
T 3piu_A 327 IAENHKRLKQRQKKLVSGLQKS-GISCLNGNA--GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC--- 400 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TCEECCCCS--SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCcccCCCe--eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC---
Confidence 5667788888999999999877 777665543 5788888863211111114567888887767999987655422
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|++++.. ++++|++++++|++++++
T Consensus 401 -----------~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 401 -----------TEPGWFRVCFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp -----------SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 3467999999765 899999999999999865
No 105
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.96 E-value=1.5e-28 Score=240.80 Aligned_cols=331 Identities=11% Similarity=0.029 Sum_probs=224.0
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-CCCcEEEecChhHHHHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-DVGEISLVDNATTAAAI 113 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~i~~t~g~t~a~~~ 113 (452)
.+ .++.|+.+... +.|+.+.+++.+.+.....++.. ....++.+.+.+.+++.+|.+ ++++|++|+|+|+++.+
T Consensus 22 ~g-~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~---~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~ 97 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKS---AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN 97 (376)
T ss_dssp SS-CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCT---TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred cC-CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCC---CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence 44 78899877765 46778888888765222111110 112233344444444444863 26899999999999999
Q ss_pred HHHHhhcccccCCCCC--CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 114 VLQQIGRGFTEGRFHR--NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~--g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
++.++ .++ ||+|+++.++|++....+ ...|.+++.++.. .++.+ . ++++++. ++
T Consensus 98 ~~~~~--------~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~----~~~~~~~-~l~~~~~------~~ 154 (376)
T 3ezs_A 98 FPSFV--------LFDYQNPTIAYPNPFYQIYEGAA----KFIKAKSLLMPLT----KENDFTP-SLNEKEL------QE 154 (376)
T ss_dssp HHHHH--------TTTCSSCEEEEEESCCTHHHHHH----HHTTCEEEEEECC----GGGTSCC-CCCHHHH------HH
T ss_pred HHHHH--------cCCCCCCEEEEecCCcHhHHHHH----HHcCCEEEEcccC----CCCCcch-hHHhhhc------cC
Confidence 99987 477 899999999999876554 5569999999653 22222 3 5666663 47
Q ss_pred eEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccccc---------ccCccEEEEcCcccC
Q 012991 191 IRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVK---------EIGADFYVSNLHKWF 255 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~---------~~~~d~~~~s~~K~l 255 (452)
+++|++++++||||.++| +++|+++|++||+ ++|+|++|+.... +.... ..+.++++.|++|++
T Consensus 155 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 233 (376)
T 3ezs_A 155 VDLVILNSPNNPTGRTLSLEELISWVKLALKHDF-ILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRS 233 (376)
T ss_dssp CSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTT
T ss_pred CCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCc-EEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhcc
Confidence 889999999999999988 5567777999999 8999999876432 11111 346778999999974
Q ss_pred cCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 012991 256 FCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 256 ~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~ 333 (452)
|++| +|+++.++++++. + ... ......+.+...+.++.++++.. +..+..++++++++++
T Consensus 234 -g~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~ 295 (376)
T 3ezs_A 234 -SAPGLRSGFIAGDSRLLEK-Y-KAF-----------RAYLGYTSANAIQKASEAAWLDD----RHAEFFRNIYANNLKL 295 (376)
T ss_dssp -TCGGGCCEEEEECHHHHHH-H-HHH-----------HTTTCCCCCHHHHHHHHHHHHCS----HHHHHHHHHHHHHHHH
T ss_pred -CCccceeEEEeeCHHHHHH-H-HHH-----------HhhhcCCCChHHHHHHHHHHhCc----HHHHHHHHHHHHHHHH
Confidence 5444 7998888777764 1 111 00011233444444444444431 1357777788888888
Q ss_pred HHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 334 MARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 334 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
+.+.|. ++. .+. .+.++++.++ +..++.+.|.+++||.+.++..+... ...+
T Consensus 296 l~~~l~---~~~--~~~--~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~------------~~~~ 347 (376)
T 3ezs_A 296 ARKIFK---NTL--IYP--YSFYVYLPVQ---------NGENFAKTLYQNEGIITLPALYLGRN------------RIGA 347 (376)
T ss_dssp HHHHST---TCC--CCS--BSSEEEEECS---------CHHHHHHHHHHHHCCBCEEGGGGCST------------TTTT
T ss_pred HHHHhc---CCC--CCC--cceEEEEECC---------CHHHHHHHHHHhCCEEEeCcHHhCCC------------CCCC
Confidence 888776 443 333 2678888774 45678888876459999877665311 1346
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++. +++|+++++++|++++++
T Consensus 348 ~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 348 DYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp TEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred CeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 799999985 899999999999998864
No 106
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.96 E-value=7.8e-28 Score=237.29 Aligned_cols=340 Identities=13% Similarity=0.097 Sum_probs=232.1
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC--CCC-cEEEecChhHHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD--DVG-EISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~-~i~~t~g~t~a~ 111 (452)
.++.++.|+.+... +.|+.+.+++.+.+.....++.. ....+..+.+.+.+.+.+|.+ +++ +|++|+|+++|+
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~---~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al 104 (396)
T 3jtx_A 28 EGMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLT---AGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREAL 104 (396)
T ss_dssp TTCCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCT---TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHH
T ss_pred cCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCC---CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHH
Confidence 46789999888765 56778999988866432222211 112344444555555555742 367 999999999999
Q ss_pred HHHHHHhhcccccCCCCCC-----CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChH-HH-HHHHHHHHhcc
Q 012991 112 AIVLQQIGRGFTEGRFHRN-----DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEE-EI-INEFKKGIEKG 184 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g-----~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~-~~~l~~~i~~~ 184 (452)
.+++.++ .++| ++|+++.+.|++....+ ...|.+++.++++ +++ .+ +++|+++++
T Consensus 105 ~~~~~~~--------~~~g~~~~~d~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~----~~g~~~d~~~l~~~~~-- 166 (396)
T 3jtx_A 105 FSFVQTV--------LNPVSDGIKPAIVSPNPFYQIYEGAT----LLGGGEIHFANCP----APSFNPDWRSISEEVW-- 166 (396)
T ss_dssp HHHHHHH--------CCC---CCCCEEEEEESCCHHHHHHH----HHTTCEEEEEECC----TTTCCCCGGGSCHHHH--
T ss_pred HHHHHHH--------hCCCCccCCCEEEEcCCCcHhHHHHH----HHcCCEEEEeecC----CCCCccCHHHHHHhhc--
Confidence 9999987 3665 79999999999876554 5569999999752 111 22 678888884
Q ss_pred ccCCCceEEEEEeccCCCCcccccHHH---HHHHHHHcCCCEEEEecccccCCc----ccccc--------ccCccEEEE
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIPVRK---LVKICRDEGVDQVFVDAAHAMGSI----KIDVK--------EIGADFYVS 249 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~l~~---i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~--------~~~~d~~~~ 249 (452)
+++++|++++++||||.++|.++ |+++|++||+ ++|+|++|+.... +.... ..+.++++.
T Consensus 167 ----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 241 (396)
T 3jtx_A 167 ----KRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGF-IIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFT 241 (396)
T ss_dssp ----HTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCC-EEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEE
T ss_pred ----cCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCC-EEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEe
Confidence 57999999999999999998665 8899999999 8999999875332 22211 145678999
Q ss_pred cCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH
Q 012991 250 NLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327 (452)
Q Consensus 250 s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~ 327 (452)
|++|. ++++| +|+++.++++++. + ... ......+.+...+.++.++++. ...++..++++
T Consensus 242 s~sK~-~~~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~ 303 (396)
T 3jtx_A 242 SLSKR-SNVPGLRSGFVAGDAELLKN-F-LLY-----------RTYHGSAMSIPVQRASIAAWDD----EQHVIDNRRLY 303 (396)
T ss_dssp ESTTT-SSCGGGCCEEEEECHHHHHH-H-HHH-----------HHHHTCCCCHHHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred ccccc-cCCcccceEEEEeCHHHHHH-H-HHH-----------HhhcccCCCHHHHHHHHHHhCC----HHHHHHHHHHH
Confidence 99995 45444 7898888777764 1 111 0111233444444444444442 12467778888
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC
Q 012991 328 HEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD 407 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~ 407 (452)
+++++.+.+.|.+. +.+..+.. +.++++.++ ..+..++.+.|.+++||.+.++..+.....
T Consensus 304 ~~~~~~l~~~l~~~--~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~-------- 364 (396)
T 3jtx_A 304 QEKFERVIPILQQV--FDVKLPDA--SFYIWLKVP-------DGDDLAFARNLWQKAAIQVLPGRFLARDTE-------- 364 (396)
T ss_dssp HHHHHHHHHHHTTT--SCCCCCSS--SSEEEEECT-------TSCHHHHHHHHHHHHCEECEEGGGGCCCCT--------
T ss_pred HHHHHHHHHHHHhc--CCccCCCe--eEEEEEECC-------CCCHHHHHHHHHHHCCEEEeCChHhCCccc--------
Confidence 88888888888765 33444433 678888886 245678888886556999987765532100
Q ss_pred CCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 408 KDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 408 ~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
......+++|++++. +.+++++++++|++++
T Consensus 365 ~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 365 QGNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp TCCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred ccCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 001346799999986 8999999999998865
No 107
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.96 E-value=1.7e-27 Score=233.04 Aligned_cols=342 Identities=14% Similarity=0.066 Sum_probs=226.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.++.|+.+.+++.+.+.....+ ......++++.+++++|.+ ++++|+|||+|+.+++.++.+ .+
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~--------~~~~~~~l~~~la~~~~~~---~v~~~~ggt~al~~~~~~~~~-----~~ 71 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLT--------QGKRSLLFEEALCEFLGVK---HALVFNSATSALLTLYRNFSE-----FS 71 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCS--------SSHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHSSC-----CC
T ss_pred CCCCCHHHHHHHHHHHHcCccc--------CChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHhcc-----cC
Confidence 3567777999998876431111 1345789999999999984 899999999999999998621 05
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
++||+|+++.++|+++..++. ..|.+++.+++ +.++.+ +++|++.+ .+++++|+++++ +|.+
T Consensus 72 ~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~~~----~~~~~~d~~~l~~~i------~~~~~~v~~~~~---tG~~ 134 (375)
T 2fnu_A 72 ADRNEIITTPISFVATANMLL----ESGYTPVFAGI----KNDGNIDELALEKLI------NERTKAIVSVDY---AGKS 134 (375)
T ss_dssp TTSCEEEECSSSCTHHHHHHH----HTTCEEEECCB----CTTSSBCGGGSGGGC------CTTEEEEEEECG---GGCC
T ss_pred CCCCEEEECCCccHhHHHHHH----HCCCEEEEecc----CCCCCCCHHHHHhhc------CcCceEEEEeCC---cCCc
Confidence 789999999999999877764 36999998854 322333 78888888 567899888877 8999
Q ss_pred ccHHHHHHHHHHcCCCEEEEecccccCCcccc--ccccCccEEEEcC--cccCcCCCCcEEEEEe--cCccccCCCCCce
Q 012991 207 IPVRKLVKICRDEGVDQVFVDAAHAMGSIKID--VKEIGADFYVSNL--HKWFFCPPSVAFLYCR--KSILSSDMHHPVV 280 (452)
Q Consensus 207 ~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~--~~~~~~d~~~~s~--~K~l~g~~G~G~l~~~--~~~~~~~l~~~~~ 280 (452)
.|+++|.++|++||+ ++|+|++|+.|..+.+ +..++ |+++.|+ ||+ +|+ |.|+++++ +++.+. + .+..
T Consensus 135 ~~l~~i~~l~~~~~~-~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~-~~~-g~g~~~~~~~~~~~~~-~-~~~~ 208 (375)
T 2fnu_A 135 VEVESVQKLCKKHSL-SFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKP-ITT-AEGGAVVTNDSELHEK-M-KLFR 208 (375)
T ss_dssp CCHHHHHHHHHHHTC-EEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSS-SCC-SSCEEEEESCHHHHHH-H-HHHT
T ss_pred cCHHHHHHHHHHcCC-EEEEECccccCCeECCeeccccC-CeEEEeCCCCCC-ccc-cCceEEEeCCHHHHHH-H-HHHH
Confidence 999999999999999 7999999998876433 22222 5555555 597 466 78888884 345443 1 1110
Q ss_pred eccCCCC--cccccccccccCcc-ccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc---cccc
Q 012991 281 SHEFGNG--LPIESAWIGTRDYS-AQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP---EICA 354 (452)
Q Consensus 281 ~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~~ 354 (452)
. .+.. .+.. +..++..+. ....+.+++..... ++++.+.++.+++++++.+.|.+++++++..++ ....
T Consensus 209 ~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 283 (375)
T 2fnu_A 209 S--HGMLKKDFFE-GEVKSIGHNFRLNEIQSALGLSQL--KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSN 283 (375)
T ss_dssp B--TTEEESSSSC-EEESSCCCBCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCC
T ss_pred h--cCCccccccc-cccccccccCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcce
Confidence 0 0100 0000 000111111 22333334443332 278888999999999999999887777765542 1123
Q ss_pred ceEEEEcCCccccCChh-hHHHHHHHHhhhcceEeeecccCCCCCCCCCCC----CCCCC----CCccceEEecccccCC
Q 012991 355 AMVMVGLPSRLRVMGED-DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAG----ARDKD----GIITGYARISHQVYNT 425 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~----~~~~~----~~~~~~iRis~~~~~t 425 (452)
.++++.++. .+. +..++.+.|.+ .||.++..+.+... .... ..... ....+++|++++.++|
T Consensus 284 ~~~~~~~~~-----~~~~~~~~l~~~L~~-~gi~v~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 354 (375)
T 2fnu_A 284 HLYPILMHQ-----KFFTCKKLILESLHK-RGILAQVHYKPIYQ---YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN 354 (375)
T ss_dssp SCEEEEECG-----GGGGGHHHHHHHHHH-TTEECBCCCCCGGG---SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred EEEEEEeCc-----cccchHHHHHHHHHH-CCCCcccccccccc---chhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence 455666651 123 67789999976 49999743322100 0000 00000 0113689999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012991 426 LEDYEKFRDAVILLVEE 442 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~ 442 (452)
.+|+++++++|+++++.
T Consensus 355 ~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 355 LESVQNIAHSVLKTFES 371 (375)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
No 108
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.96 E-value=1e-28 Score=239.87 Aligned_cols=329 Identities=12% Similarity=0.085 Sum_probs=228.8
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
+.+++|+++.....++.+.+++.+... . ....+...+..+++++++++++| + +.++++|+|||+|+.+++.+
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~-----~-~~~~~~~~~~~~~l~~~la~~~g-~-~~~v~~~~~gt~a~~~al~~ 78 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSS-----G-QAGPYGTDELTAQVKRKFCEIFE-R-DVEVFLVPTGTAANALCLSA 78 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTS-----S-CCCSTTCSHHHHHHHHHHHHHHT-S-CCEEEEESCHHHHHHHHHHT
T ss_pred CceEeeccCCccCCCHHHHHHHHhhcc-----C-cccccccchHHHHHHHHHHHHhC-C-CCcEEEeCCccHHHHHHHHH
Confidence 457889888777788889999887631 1 11123345678999999999999 4 45699999999999999886
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHH--HHHHHHhc--CcEEEEEeCCCCCCChHHH-HHHHHH-HHhccc-cCCCc
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKS--IQAYVTRA--GGSVVEVQLPFPLASEEEI-INEFKK-GIEKGK-KDGKM 190 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~--~~~~a~~~--g~~v~~~~~~~~~~~~~~~-~~~l~~-~i~~~~-~~~~~ 190 (452)
+ .++||+|+++.+.|.+.... + ... |.+++.++. + ++.+ +++|++ ++++.. ..+.+
T Consensus 79 ~--------~~~gd~vi~~~~~~~~~~~~~~~----~~~~~g~~~~~v~~----~-~~~~d~~~l~~~~i~~~~~~~~~~ 141 (356)
T 1v72_A 79 M--------TPPWGNIYCHPASHINNDECGAP----EFFSNGAKLMTVDG----P-AAKLDIVRLRERTREKVGDVHTTQ 141 (356)
T ss_dssp S--------CCTTEEEEECTTSHHHHSSTTHH----HHHTTSCEEEECCC----G-GGCCCHHHHHHHTTSSTTCTTSCE
T ss_pred h--------cCCCCEEEEcCccchhhhhchHH----HHHhCCcEEEEecC----C-CCeEcHHHHHHHhhhcchhhccCC
Confidence 5 47899999999999876544 3 334 888888743 2 2334 899998 885310 01237
Q ss_pred eEEEEEeccCCCCcccc---cHHHHHHHHHHcCCCEEEEecccccCC-----cccccc--ccCccEEEEcCcccCcCCCC
Q 012991 191 IRLAIIDHITSMPCVVI---PVRKLVKICRDEGVDQVFVDAAHAMGS-----IKIDVK--EIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~---~l~~i~~l~~~~~~~~~ivD~a~~~g~-----~~~~~~--~~~~d~~~~s~~K~l~g~~G 260 (452)
+++|++++++| ||.++ ++++|.++|++||+ ++|+|++++.+. ...... ..++|++++|+||+ ++|.|
T Consensus 142 ~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G 218 (356)
T 1v72_A 142 PACVSITQATE-VGSIYTLDEIEAIGDVCKSSSL-GLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAA 218 (356)
T ss_dssp EEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTC-EEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSC
T ss_pred ceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCC-eEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCc
Confidence 89999999876 99955 47789999999999 799999986431 111111 13678999999998 77777
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
+|+++.++++++. + ... .. ..+........+...+++.+.+ +.+..+.++..++++++.+.|.+
T Consensus 219 ~g~~~~~~~~~~~-~-~~~-~~-----------~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~L~~ 282 (356)
T 1v72_A 219 EAIVLFNTSLATE-M-SYR-RK-----------RAGHLSSKMRFLSAQIDAYLTD--DLWLRNARKANAAAQRLAQGLEG 282 (356)
T ss_dssp EEEEESSGGGHHH-H-HHH-HH-----------HTTCCCSSTHHHHHHHHHHTST--THHHHHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEECHHHHhh-H-HHH-hh-----------ccCchhhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhh
Confidence 7888888877764 1 111 00 0111111122222223333332 13456677788899999999987
Q ss_pred HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecc
Q 012991 341 AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISH 420 (452)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~ 420 (452)
++++++..+.. ++++++.++ .++.+.|.+ .||.+..+. + . ++++|+++
T Consensus 283 ~~g~~~~~~~~--~~~~~~~~~-----------~~~~~~l~~-~gi~v~~g~-~---------------~--~~~iRi~~ 330 (356)
T 1v72_A 283 LGGVEVLGGTE--ANILFCRLD-----------SAMIDALLK-AGFGFYHDR-W---------------G--PNVVRFVT 330 (356)
T ss_dssp CTTEEEESCCC--SSEEEEEEC-----------HHHHHHHHH-TTCBCBCSS-S---------------S--TTEEEEEC
T ss_pred CCCcEEccCCC--ccEEEEEcC-----------HHHHHHHHh-cCeEEeccc-c---------------C--CCeEEEEe
Confidence 66777655543 677887764 268888866 499986433 1 1 46999999
Q ss_pred cccCCHHHHHHHHHHHHHHHhc
Q 012991 421 QVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 421 ~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+..+|++|+++++++|++++++
T Consensus 331 ~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 331 SFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CTTCCHHHHHHHHHHHHHTC--
T ss_pred cCCCCHHHHHHHHHHHHHHHHh
Confidence 9889999999999999998754
No 109
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.96 E-value=3.3e-28 Score=240.45 Aligned_cols=339 Identities=15% Similarity=0.103 Sum_probs=226.8
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH--hC-CCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL--IN-ADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~-~~~~~~i~~t~g~t~a~~ 112 (452)
++.+++|+.+..+ +.|+.+.+++.+.+..... +.....|.......+++++++++ +| ++ +++|++|+|+++++.
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~y~~~~g~~~lr~~la~~l~~g~~~-~~~v~~~~G~~~al~ 109 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIARLSS-PTTCRGYGPDFGLPALRQKLSEDFYRGFVD-AKEIFISDGAKVDLF 109 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTS-SSCCCCCCCTTCCHHHHHHHHHTTSTTSSC-GGGEEEESCHHHHHH
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhcccc-cccccCCCCCCCCHHHHHHHHHHHHcCCCC-HHHEEEccChHHHHH
Confidence 5689999988775 5677899999988766422 11112233345578899999999 47 54 689999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE-EEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS-VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
+++.. +++||+|++++|+|++....+ ...|.+ ++.++.+ .++.+..++ ++ .+++
T Consensus 110 ~~~~~---------~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~----~~~~~~~~l----~~----~~~~ 164 (400)
T 3asa_A 110 RLLSF---------FGPNQTVAIQDPSYPAYLDIA----RLTGAKEIIALPCL----QENAFFPEF----PE----DTHI 164 (400)
T ss_dssp HHHHH---------HCSSCEEEEEESCCHHHHHHH----HHTTCSEEEEEECC----GGGTTCCCC----CT----TCCC
T ss_pred HHHHH---------cCCCCEEEECCCCcHHHHHHH----HHcCCcceEecccc----hhcCcccCh----hh----ccCc
Confidence 87653 368999999999999876554 446887 8888642 211111111 11 1568
Q ss_pred EEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccc-cC---Ccccccccc----CccEEEEcCcccCcCCCC
Q 012991 192 RLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHA-MG---SIKIDVKEI----GADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~-~g---~~~~~~~~~----~~d~~~~s~~K~l~g~~G 260 (452)
++|++++++||||.++| +++|+++|+++|+ ++|+|++++ ++ ..+.++..+ +.++++.|++|+ +|++|
T Consensus 165 ~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~g~~G 242 (400)
T 3asa_A 165 DILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEI-LILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKP-LGFAG 242 (400)
T ss_dssp SEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGG-GTTTT
T ss_pred cEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCC-EEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhh-cCCcc
Confidence 89999999999999998 4568889999999 899999998 32 222233322 235888999997 56566
Q ss_pred --cEEEEEecCccccCCC---CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 261 --VAFLYCRKSILSSDMH---HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 261 --~G~l~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
+|++++++++... .. ...... ......++.+...+.++ ...+... ..+.++++++++++++.
T Consensus 243 lriG~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~---~~~l~~~--~~~~~~~~~~~~~~~l~ 309 (400)
T 3asa_A 243 IRLGWTVIPQELTYA-DGHFVIQDWER-------FLSTTFNGASIPAQEAG---VAGLSIL--PQLEAIHYYRENSDLLR 309 (400)
T ss_dssp CCCEEEECCTTCBCT-TSCBHHHHHHH-------HHHHHCCCCCHHHHHHH---HHHHHHT--TTCHHHHHHHHHHHHHH
T ss_pred hheeEEeeChhhccc-hhhhHHHHHHH-------HhccCccCCChHHHHHH---HHHhCcH--HHHHHHHHHHHHHHHHH
Confidence 7999988877422 00 000000 00000123333333333 3333431 46778888999999999
Q ss_pred HHHHHHcCCCcCCCcccccceEEEE-cCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 336 RMLANAWGTSLGSPPEICAAMVMVG-LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 336 ~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
+.|.+. ++++..+.. ++++|+. ++ .+.+..++.+.|.+++||.+.++..+.. ..++
T Consensus 310 ~~L~~~-g~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~l~~~~gv~v~~g~~f~~--------------~~~~ 366 (400)
T 3asa_A 310 KALLAT-GFEVFGGEH--APYLWVKPTQ------ANISDRDLFDFFLREYHIAITPGIGFGR--------------SGSG 366 (400)
T ss_dssp HHHHHT-TCEEEECSS--SSEEEEECCC------TTCCTTTHHHHHHHHHSEECEEGGGGCG--------------GGTT
T ss_pred HHHHHC-CCeeeCCCC--ceEEEEeccC------CCCCHHHHHHHHHHhCCEEEeChhHhCC--------------CCCC
Confidence 999887 776654433 6788888 76 2334456777776556999987655421 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++|+++ +++++++++++++|+++++.
T Consensus 367 ~iRis~--~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 367 FVRFSS--LGKREDILAACERLQMAPAL 392 (400)
T ss_dssp CEEEEC--CSCHHHHHHHHHHHHC----
T ss_pred EEEEEe--eCCHHHHHHHHHHHHHHHHh
Confidence 899995 46899999999999988764
No 110
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.96 E-value=5.3e-28 Score=236.76 Aligned_cols=303 Identities=15% Similarity=0.105 Sum_probs=218.7
Q ss_pred hhhhHHHHHHHHHHHhHhC-CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 76 NSLRKGILESRAAVKDLIN-ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~-~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
+....+..++++.++++++ ++ ++++++|+|||+|+.+++.++ +++||+|+++.+.|++....+ ...
T Consensus 59 y~~~~g~~~l~~~la~~~~~~~-~~~v~~~~g~~~a~~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~----~~~ 125 (375)
T 3op7_A 59 YGWIEGSPAFKKSVSQLYTGVK-PEQILQTNGATGANLLVLYSL--------IEPGDHVISLYPTYQQLYDIP----KSL 125 (375)
T ss_dssp SCCTTCCHHHHHHHHTTSSSCC-GGGEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESSCTHHHHHH----HHT
T ss_pred CCCCCChHHHHHHHHHHhccCC-hhhEEEcCChHHHHHHHHHHh--------cCCCCEEEEeCCCchhHHHHH----HHc
Confidence 3344556889999999984 54 789999999999999999987 589999999999999876554 456
Q ss_pred CcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEeccc
Q 012991 155 GGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAH 230 (452)
Q Consensus 155 g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~ 230 (452)
|.+++.++++. ++...+ ++++++++ .+++++|++++++||+|.++| +++|.++|++||+ ++|+|++|
T Consensus 126 g~~~~~v~~~~--~~~~~~d~~~l~~~l------~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~-~li~De~~ 196 (375)
T 3op7_A 126 GAEVDLWQIEE--ENGWLPDLEKLRQLI------RPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGA-YILSDEVY 196 (375)
T ss_dssp TCEEEEEEEEG--GGTTEECHHHHHHHC------CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTC-EEEEECCS
T ss_pred CCEEEEEeccc--cCCCCCCHHHHHHhh------ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEccc
Confidence 99999986521 111123 89999999 578999999999999999999 8999999999999 79999998
Q ss_pred ccCCcc---ccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCcccccc
Q 012991 231 AMGSIK---IDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLV 305 (452)
Q Consensus 231 ~~g~~~---~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (452)
+.+... .-....+.++++.|++|++ |++| +|++++++++++. + .... ..+..+.+.....+
T Consensus 197 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~v~~~~~l~~~-~-~~~~-----------~~~~~~~~~~~~~~ 262 (375)
T 3op7_A 197 RSFSELDVPSIIEVYDKGIAVNSLSKTY-SLPGIRIGWVAANHQVTDI-L-RDYR-----------DYTMICAGVFDDLV 262 (375)
T ss_dssp CCCSSSCCCCHHHHCTTEEEEEESSSSS-SCGGGCCEEEECCHHHHHH-H-TTTG-----------GGTTSCCCHHHHHH
T ss_pred ccccccCCCchhhhcCCEEEEeEChhhc-CCcccceEEEEeCHHHHHH-H-HHHH-----------hhhccCCCcHHHHH
Confidence 764332 1111234568889999974 5444 6999888777765 2 1110 00112223333333
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcc
Q 012991 306 IPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFG 385 (452)
Q Consensus 306 ~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 385 (452)
...+++.... ..+..+++.+++++.+.+.|.+.+++.+..+.. +.++++.++ ...+..++.+.|.+++|
T Consensus 263 ~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~ll~~~g 331 (375)
T 3op7_A 263 AQLALAHYQE---ILERNRHILEENLAILDQWIEEEPLVSYIRPAV--VSTSFVKIA------VDMPMEDFCLQLLQEHG 331 (375)
T ss_dssp HHHHHHTHHH---HHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSS--SSCEEEEEC------CSSCHHHHHHHHHHHHC
T ss_pred HHHHHhccHH---HHHHHHHHHHHHHHHHHHHHhhCCCceEecCCC--eEEEeEEcC------CCCCHHHHHHHHHHhCC
Confidence 3344443332 356777777888999999998877777665554 445555554 24466788888754569
Q ss_pred eEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 386 VEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 386 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
|.+.++..+ ..++++|++++. +.+++++++++|+++++.-
T Consensus 332 i~v~~g~~~----------------~~~~~iRi~~~~--~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 332 VLLVPGNRF----------------ERDGYVRLGFAC--EQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp EECEEGGGG----------------TCTTEEEECCCS--CHHHHHHHHHHHHHHHGGG
T ss_pred EEEeChhhh----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence 999776654 125799999886 5689999999999998754
No 111
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.96 E-value=9.1e-28 Score=237.93 Aligned_cols=358 Identities=11% Similarity=0.057 Sum_probs=237.3
Q ss_pred HHHhhhcc-CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC------CCCC-
Q 012991 28 EIRDEFSH-HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN------ADDV- 98 (452)
Q Consensus 28 ~ir~~~~~-~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~- 98 (452)
.+++.+.. .+.++++|+.+.+. +.|+.+.+++.+.+... ....|.......++++.++++++ ++ +
T Consensus 12 ~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~-~~ 85 (410)
T 3e2y_A 12 VWVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFID-----NMNQYTRGFGHPALVKALSCLYGKIYQRQID-PN 85 (410)
T ss_dssp HHHHTTTTTTSTTSEECSSCCCCSCCCHHHHHHHHHHHTCG-----GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCC-TT
T ss_pred HHHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCc-----cccCCCCCCChHHHHHHHHHHHHHHhCCCCC-CC
Confidence 34444332 34679999998877 56788999998876421 11122222234566666666665 43 5
Q ss_pred CcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCC-------CCChH
Q 012991 99 GEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFP-------LASEE 171 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~-------~~~~~ 171 (452)
++|++|+|+++|+..++.++ +++||+|+++.+.|++....+ ...|.+++.+++... .+.++
T Consensus 86 ~~i~~~~g~~~a~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~g~~~~~~~~ 153 (410)
T 3e2y_A 86 EEILVAVGAYGSLFNSIQGL--------VDPGDEVIIMVPFYDCYEPMV----RMAGAVPVFIPLRSKPTDGMKWTSSDW 153 (410)
T ss_dssp TSEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEECCCCSSCCBGGGE
T ss_pred CCEEEeCCcHHHHHHHHHHh--------cCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEeccccccccccccccCC
Confidence 79999999999999999987 478999999999999876554 456999999876310 01122
Q ss_pred HH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccc---cHHHHHHHHHHcCCCEEEEecccccCCc----cccccc--
Q 012991 172 EI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVI---PVRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVKE-- 241 (452)
Q Consensus 172 ~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~---~l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~~-- 241 (452)
.+ ++++++++ .+++++|++++++||||.++ ++++|+++|++||+ ++|+|++|+.... ..++..
T Consensus 154 ~~d~~~l~~~~------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~ 226 (410)
T 3e2y_A 154 TFDPRELESKF------SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDT-LCISDEVYEWLVYTGHTHVKIATLP 226 (410)
T ss_dssp ECCHHHHHTTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCTTCCCCCGGGST
T ss_pred cCCHHHHHhhc------CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCc-EEEEEhhhhhcccCCCCCCCHHHcC
Confidence 33 88999888 56899999999999999996 57889999999999 8999999875321 112222
Q ss_pred --cCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH----
Q 012991 242 --IGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV---- 313 (452)
Q Consensus 242 --~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---- 313 (452)
.+.++++.|++|+ +|++| +|+++++++++.. + ... ......+.+...+.++..+++..
T Consensus 227 ~~~~~~i~~~S~sK~-~g~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~~l~~~~~~~ 292 (410)
T 3e2y_A 227 GMWERTITIGSAGKT-FSVTGWKLGWSIGPAHLIKH-L-QTV-----------QQNSFYTCATPLQAALAEAFWIDIKRM 292 (410)
T ss_dssp TCGGGEEEEEEHHHH-SSCGGGCCEEEECCHHHHHH-H-HHH-----------HHTTTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CccCeEEEEecchhh-cCCCCceEEEEEECHHHHHH-H-HHH-----------HHhhccCCChHHHHHHHHHHHhhhccc
Confidence 2345888899997 55444 7999888877764 1 111 00001233333444444444321
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc-cC----ChhhHHHHHHHHhhhcceEe
Q 012991 314 SRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR-VM----GEDDALRLRGHLRVRFGVEV 388 (452)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~l~~~L~~~~gI~v 388 (452)
.......+.++++++++++++.+.|.++ ++.+..+.. +.++++.++.... .. +..+..++.+.|.+++||.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v 369 (410)
T 3e2y_A 293 DDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDG--GYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTA 369 (410)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSB--SSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEEC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCc--cEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEE
Confidence 0011246778888899999999999887 777655544 6777777642100 00 01123467776655569999
Q ss_pred eecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 389 PIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
.++..+..... .....+++|+|++. ++++|++++++|++
T Consensus 370 ~~g~~f~~~~~---------~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 370 IPVSAFCDSKS---------KPHFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp EEGGGGSCTTT---------HHHHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred eCchhhCCCCC---------CCCCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 87665421100 00135799999886 99999999999875
No 112
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.96 E-value=1.1e-26 Score=230.44 Aligned_cols=322 Identities=16% Similarity=0.130 Sum_probs=214.6
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.....+..+++++++++++|.+ ++++++|||+|+..++.++ +++||+|+++.++|+++...+..+++.
T Consensus 50 y~~~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~al~~l--------~~~gd~vi~~~~~~~~~~~~~~~~~~~ 118 (412)
T 2cb1_A 50 YARQKDPTAKALEERLKALEGAL---EAVVLASGQAATFAALLAL--------LRPGDEVVAAKGLFGQTIGLFGQVLSL 118 (412)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT--------CCTTCEEEEETTCCHHHHHHHHHTTTT
T ss_pred cCCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 33334567899999999999984 8999999999999999976 478999999999999988887654566
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|.+++.++ .+ +++|++++ .+++++|++++++||+|.+.|+++|+++|++||+ ++|+|++|+.+
T Consensus 119 ~g~~~~~~~----~~-----~~~l~~~i------~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~-~li~D~~~~~~ 182 (412)
T 2cb1_A 119 MGVTVRYVD----PE-----PEAVREAL------SAKTRAVFVETVANPALLVPDLEALATLAEEAGV-ALVVDNTFGAA 182 (412)
T ss_dssp TTCEEEEEC----SS-----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTC-EEEEECGGGTT
T ss_pred cCCEEEEEC----CC-----HHHHHHHh------ccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCC-EEEEECCCccc
Confidence 799999994 33 68899888 5789999999999999999999999999999999 79999999887
Q ss_pred CccccccccCccEEEEcCcccCcCCCC-cEEEEEecCcccc----CCCCCceeccCCCC--------cccccccccccCc
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS-VAFLYCRKSILSS----DMHHPVVSHEFGNG--------LPIESAWIGTRDY 300 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G-~G~l~~~~~~~~~----~l~~~~~~~~~~~~--------~~~~~~~~~~~~~ 300 (452)
.........++|++++|+||++++|.+ +|++++.++.... .+..+.. +|.. ........++.+.
T Consensus 183 ~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~r~~~~~~ 259 (412)
T 2cb1_A 183 GALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL---KGQIPWEALRARCFPERVRTLGLSL 259 (412)
T ss_dssp TTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC----------HHHHGGGHHHHHHHHHHTTT
T ss_pred cccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc---cccchhhccchHHHHHHHHHHHHHh
Confidence 322233345799999999999777665 6777765532110 0111110 1100 0000000011010
Q ss_pred c--ccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCC
Q 012991 301 S--AQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPS 363 (452)
Q Consensus 301 ~--~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~ 363 (452)
. ......+++.+..- +.++...++..++.+++.+.|.+.+++. +..|. ...++++.|.+.
T Consensus 260 ~g~~~~~~~a~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~- 336 (412)
T 2cb1_A 260 CGMALSPFNAYLLFQGL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLG- 336 (412)
T ss_dssp TCCCCCHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECS-
T ss_pred cCCCCChHHhHHHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeC-
Confidence 0 11112222222111 1344555666788999999999887876 32232 134778888772
Q ss_pred ccccCChhhHHHHHHHHhhhcceEeeecccCCCCC--CCCCCCCCC--------CCCCccceEEecccccCCHHHHHHHH
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDD--GQPQAGARD--------KDGIITGYARISHQVYNTLEDYEKFR 433 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~iRis~~~~~t~~di~~l~ 433 (452)
+...+.+.|.+ .||.+ .+....... .+|...... +.+..++.||+|++.++++++|+++.
T Consensus 337 --------~~~~~~~~l~~-~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~ 406 (412)
T 2cb1_A 337 --------DLERASRFLGA-IRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFE 406 (412)
T ss_dssp --------SHHHHHHHHHH-CSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHH
T ss_pred --------CHHHHHHHHHh-CCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHH
Confidence 34567777755 59988 552100000 011111111 01223689999999999999999999
Q ss_pred HHHHH
Q 012991 434 DAVIL 438 (452)
Q Consensus 434 ~~l~~ 438 (452)
++|++
T Consensus 407 ~al~~ 411 (412)
T 2cb1_A 407 EALEA 411 (412)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 99874
No 113
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.96 E-value=1.2e-27 Score=232.66 Aligned_cols=284 Identities=10% Similarity=0.053 Sum_probs=202.7
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC-CEEEEeCCcchhHHHHHHHHHHhcCcEEEE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGSVVE 160 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~ 160 (452)
..+++++++++++++ +++|++|+|+++++.+++.++ .++| |+|++++|+|++....+. ..|.+++.
T Consensus 60 ~~~lr~~la~~~~~~-~~~v~~~~G~~~ai~~~~~~~--------~~~g~d~Vl~~~p~~~~~~~~~~----~~g~~~~~ 126 (356)
T 1fg7_A 60 PKAVIENYAQYAGVK-PEQVLVSRGADEGIELLIRAF--------CEPGKDAILYCPPTYGMYSVSAE----TIGVECRT 126 (356)
T ss_dssp CHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHHHH--------CCTTTCEEEECSSSCTHHHHHHH----HHTCEEEE
T ss_pred HHHHHHHHHHHhCCC-hHHEEEcCCHHHHHHHHHHHH--------hCCCCCEEEEeCCChHHHHHHHH----HcCCEEEE
Confidence 688999999999996 789999999999999999987 4788 999999999999766554 45999988
Q ss_pred EeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCcc-
Q 012991 161 VQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSIK- 236 (452)
Q Consensus 161 ~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~~- 236 (452)
++. ++++.+ ++++++++ + ++++|++++++||||.++|.++|.++++. +|+ ++|+|++|+.....
T Consensus 127 v~~----~~~~~~d~~~l~~~i------~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~-~li~De~~~~~~~~~ 194 (356)
T 1fg7_A 127 VPT----LDNWQLDLQGISDKL------D-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKA-IVVADEAYIEFCPQA 194 (356)
T ss_dssp CCC----CTTSCCCHHHHHTSC------T-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTC-EEEEECTTGGGSGGG
T ss_pred eeC----CCCCCCCHHHHHHHh------c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCC-EEEEEccchhhcCCC
Confidence 854 222233 78888877 5 78999999999999999987665554433 899 89999999854311
Q ss_pred --ccc-cccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH
Q 012991 237 --IDV-KEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT 311 (452)
Q Consensus 237 --~~~-~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 311 (452)
.++ ...+.++++.|++|+ +|++| +|++++++++++. + .... .. .+.+...+.+..++++
T Consensus 195 ~~~~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~~~~~~~-l-~~~~-----------~~--~~~~~~~~~a~~~~l~ 258 (356)
T 1fg7_A 195 SLAGWLAEYPHLAILRTLSKA-FALAGLRCGFTLANEEVINL-L-MKVI-----------AP--YPLSTPVADIAAQALS 258 (356)
T ss_dssp CSGGGTTTCTTEEEEEESSST-TCCGGGCCEEEEECHHHHHH-H-HHHS-----------CS--SCSCHHHHHHHHHHTS
T ss_pred cHHHHHhhCCCEEEEecchHh-hcCchhhhEEEEeCHHHHHH-H-HHhc-----------CC--CCCCHHHHHHHHHHhc
Confidence 122 223567889999996 66666 7999998877664 1 1110 00 1233333333333332
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee-
Q 012991 312 FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI- 390 (452)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~- 390 (452)
.... ..++..+++++++++++.+.|.+++++....+.. ++++++.++ +..++.+.|.+ +||.++.
T Consensus 259 ~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~---------~~~~l~~~L~~-~gI~v~~~ 324 (356)
T 1fg7_A 259 PQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSE--TNYILARFK---------ASSAVFKSLWD-QGIILRDQ 324 (356)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCS--SSEEEEEET---------THHHHHHHHHH-TTEECEEC
T ss_pred CccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCC--CeEEEEECC---------CHHHHHHHHHH-CCEEEEEC
Confidence 2110 0157778888899999999998875432223332 678888774 45688899965 5999976
Q ss_pred cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 391 HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+..+ ..++++|++++ +.+|+++++++|+++
T Consensus 325 g~~~----------------~~~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 325 NKQP----------------SLSGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp TTST----------------TCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred CCCC----------------CCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 4433 12469999997 689999999999753
No 114
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.96 E-value=1.7e-27 Score=231.04 Aligned_cols=320 Identities=11% Similarity=0.070 Sum_probs=223.4
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
++.++.|+.+... +.|+.+.+++.+.+.....++. ... .+++++++++++++ ++++++|+|+|+++.+++
T Consensus 14 g~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-------~~~-~~lr~~la~~~~~~-~~~i~~t~g~~~al~~~~ 84 (350)
T 3fkd_A 14 SSEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPE-------PDA-GTLRQMLAKRNSVD-NNAILVTNGPTAAFYQIA 84 (350)
T ss_dssp --CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCC-------TTC-HHHHHHHHHHTTCC-GGGEEEESHHHHHHHHHH
T ss_pred cccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCC-------CcH-HHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHH
Confidence 4678898877544 5677799988876532222221 222 68999999999985 789999999999999999
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
.++ . ||+|+++.++|.+....+ +..|.+++.++.. ++.+. +. .+++++|+
T Consensus 85 ~~l---------~-gd~Vi~~~p~~~~~~~~~----~~~g~~~~~v~~~---~~~~~--------~~-----~~~~~~v~ 134 (350)
T 3fkd_A 85 QAF---------R-GSRSLIAIPSFAEYEDAC----RMYEHEVCFYPSN---EDIGE--------AD-----FSNMDFCW 134 (350)
T ss_dssp HHT---------T-TCEEEEEESCCHHHHHHH----HHTTCEEEEEETT---SCGGG--------SC-----CTTCSEEE
T ss_pred HHH---------C-CCEEEEeCCCcHHHHHHH----HHcCCeEEEEecC---Ccccc--------Cc-----cCCCCEEE
Confidence 976 3 899999999999876554 4569999999641 22111 11 25788999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcC-CCEEEEecccccCCcc-----ccccccCccEEEEcCcccCcCCCC--cEEEEEe
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEG-VDQVFVDAAHAMGSIK-----IDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR 267 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~-~~~~ivD~a~~~g~~~-----~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~ 267 (452)
+++++||||.++|.++|.++++.++ . ++|+|++++..... ......+.++++.|++|+ +|++| +|+++++
T Consensus 135 i~~p~nptG~~~~~~~l~~l~~~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~~G~r~G~~~~~ 212 (350)
T 3fkd_A 135 LCNPNNPDGRLLQRTEILRLLNDHPDT-TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHA-YGIPGLRIGYIVAN 212 (350)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHCTTS-EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHH-HSCGGGCCEEEECC
T ss_pred EeCCCCCcCCCCCHHHHHHHHHhCCCC-EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchh-ccCcchheEeEEeC
Confidence 9999999999999999999999987 8 79999998743321 122233556889999997 55444 7999988
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + .... ...+.+... +.++...+.....-.+.+++. .++++++.+.|.+++++.+.
T Consensus 213 ~~~~~~-~-~~~~-------------~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~ 273 (350)
T 3fkd_A 213 KDFMKR-V-AAFS-------------TPWAVNALA---IEAAKFILIHPAQFTLPIRKW-QRNTVDFITALNRLDGVEVH 273 (350)
T ss_dssp HHHHHH-H-HTTC-------------CTTCSCHHH---HHHHHHHHHCTTTTCCCHHHH-HHHHHHHHHHHHHSTTEEEC
T ss_pred HHHHHH-H-HHhC-------------CCCCCCHHH---HHHHHHHHhCHHHHHHHHHHH-HHHHHHHHHHHhcCCCcEEC
Confidence 777765 1 1110 012233333 333344444321012333443 38888999999887787764
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
.+. ++++++.++ .. +..++.+.|.+++||.+.++..+.. ..++++|+|++ +.+
T Consensus 274 ~~~---~~~~~~~~~------~~-~~~~l~~~L~~~~gi~v~~g~~f~~--------------~~~~~iRis~~---~~~ 326 (350)
T 3fkd_A 274 PSG---TTFFLLRLK------KG-TAAELKKYMLEEYNMLIRDASNFRG--------------LDESYVRITTQ---RPA 326 (350)
T ss_dssp CCS---SSEEEEEES------SS-CHHHHHHHHHHTTCEECEECTTSTT--------------CCTTEEEEECC---CHH
T ss_pred CCC---CcEEEEECC------CC-CHHHHHHHHHHHCCEEEEeCccCCC--------------CCCCEEEEEcC---CHH
Confidence 332 567788886 23 6788999997746999987665522 34679999987 899
Q ss_pred HHHHHHHHHHHHHhcc
Q 012991 428 DYEKFRDAVILLVEEG 443 (452)
Q Consensus 428 di~~l~~~l~~~~~~~ 443 (452)
++++++++|+++.++.
T Consensus 327 ~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 327 QNQLFIKALETFLEKY 342 (350)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 115
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.96 E-value=9.6e-28 Score=239.59 Aligned_cols=346 Identities=14% Similarity=0.126 Sum_probs=230.5
Q ss_pred CCCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----CCCCCCcEEEecChhHH
Q 012991 36 HQHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----NADDVGEISLVDNATTA 110 (452)
Q Consensus 36 ~~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~i~~t~g~t~a 110 (452)
.++.+++|+.+.+. +.|+.|.+++.+.+.... .......|.......++++++++++ +++ +++|++|+|++++
T Consensus 54 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~-~~~i~~t~G~~~a 131 (432)
T 3ei9_A 54 PDAQVISLGIGDTTEPIPEVITSAMAKKAHELS-TIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG-DDDVFVSDGAKCD 131 (432)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTT-STTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHH
T ss_pred CCCCeEEccCCCCCCCCCHHHHHHHHHHHhccc-ccCCccCCCCCCCCHHHHHHHHHHHHccCCCC-cceEEECCChHHH
Confidence 35679999988776 678889999999876532 1122223333445677888888886 775 7899999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC---------cEEEEEeCCCCCCChHHHHHHHHHHH
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG---------GSVVEVQLPFPLASEEEIINEFKKGI 181 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g---------~~v~~~~~~~~~~~~~~~~~~l~~~i 181 (452)
+.++ .++ +++||+|++++|.|+++...+... ...| .++..+++ +..+.+..+ +
T Consensus 132 l~~l-~~l--------~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----l 193 (432)
T 3ei9_A 132 ISRL-QVM--------FGSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYGNIEYMRC----TPENGFFPD----L 193 (432)
T ss_dssp HHHH-HHH--------HCTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEETTCEEEEC----CGGGTTSCC----G
T ss_pred HHHH-HHH--------cCCCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccCceEEecc----CcccCCcCC----h
Confidence 9875 444 479999999999999987776553 2222 35667754 222112111 2
Q ss_pred hccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---cccccc----cCccEEEEcC
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KIDVKE----IGADFYVSNL 251 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~~~~----~~~d~~~~s~ 251 (452)
++ .+++++|++++++||||.+++ +++|+++|++||+ ++|+|++|+.+.. +..+.. .+.++++.|+
T Consensus 194 ~~----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~-~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 268 (432)
T 3ei9_A 194 ST----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGS-IIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASF 268 (432)
T ss_dssp GG----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEES
T ss_pred hh----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCc-EEEEccchHhhccCCCCCChhhcCCCCCeEEEEecc
Confidence 22 367899999999999999987 4566777999999 8999999984322 222211 2456889999
Q ss_pred cccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhcCHHHHHHHHH
Q 012991 252 HKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEGGIDGIMQRNH 328 (452)
Q Consensus 252 ~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~g~~~~~~~~~ 328 (452)
+|+ +|++| +|+++++++++.... .+.... +. .......++.+...+.+..+++.. ... ..+.++++++
T Consensus 269 SK~-~g~~G~r~G~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~ 339 (432)
T 3ei9_A 269 SNY-AGFTGVRLGWTVIPKKLLYSDG-FPVAKD-FN---RIICTCFNGASNISQAGALACLTPEGLE---AMHKVIGFYK 339 (432)
T ss_dssp HHH-HCTTTTCCEEEECCTTCBCTTS-CBHHHH-HH---HHHHHSCCCSCHHHHHHHHHHSSHHHHH---HHHHHHHHHH
T ss_pred hhc-cCCcccceEEEEEChHHhhcch-HHHHHH-HH---HHhccccCCCCHHHHHHHHHHHhcccHH---HHHHHHHHHH
Confidence 997 66555 799999888742100 000000 00 000000122333333333333321 111 3677888899
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 329 EQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 329 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
++++++.+.|.++ ++.+..+.. +.++|+.++ +.+..++.+.|.+++||.+.++..+..
T Consensus 340 ~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~ll~~~gv~v~~g~~f~~------------ 397 (432)
T 3ei9_A 340 ENTNIIIDTFTSL-GYDVYGGKN--APYVWVHFP-------NQSSWDVFAEILEKTHVVTTPGSGFGP------------ 397 (432)
T ss_dssp HHHHHHHHHHHHT-TCCEEECSS--SSEEEEECT-------TSCHHHHHHHHHHHHCEECEEGGGGCG------------
T ss_pred HHHHHHHHHHHHC-CceecCCCc--ceEEEEECC-------CCCHHHHHHHHHHHCCEEEeCchHhCC------------
Confidence 9999999999887 777665443 678888886 345667777776666999987766532
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
...+++|+|+. +++++|++++++|++--.
T Consensus 398 --~~~~~iRis~~--~~~e~l~~~l~rl~~~~~ 426 (432)
T 3ei9_A 398 --GGEGFVRVSAF--GHRENILEACRRFKQLYK 426 (432)
T ss_dssp --GGTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred --CCCCEEEEEec--CCHHHHHHHHHHHHHHhh
Confidence 23579999985 489999999999987654
No 116
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.96 E-value=3.9e-27 Score=231.77 Aligned_cols=343 Identities=15% Similarity=0.121 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCE
Q 012991 53 KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDT 132 (452)
Q Consensus 53 ~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~ 132 (452)
+.+.+++.+.+... . +.+...+...++++.++++++.+ +.++++ +||+|+.+++.++ .+++||+
T Consensus 17 ~~~~~a~~~~l~~~--~----~~~~~~~~~~~l~~~la~~~~~~--~~i~~~-sGt~al~~~l~~l-------~~~~gd~ 80 (388)
T 1b9h_A 17 DAERNGLVRALEQG--Q----WWRMGGDEVNSFEREFAAHHGAA--HALAVT-NGTHALELALQVM-------GVGPGTE 80 (388)
T ss_dssp HHHHHHHHHHHHTS--C----CBTTTCSHHHHHHHHHHHHTTCS--EEEEES-CHHHHHHHHHHHT-------TCCTTCE
T ss_pred HHHHHHHHHHHHcC--C----eeecCCHHHHHHHHHHHHHhCCC--eEEEeC-CHHHHHHHHHHHc-------CCCCcCE
Confidence 77889888876531 1 12333467899999999999985 455555 5599999999976 2478999
Q ss_pred EEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHH
Q 012991 133 VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRK 211 (452)
Q Consensus 133 Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~ 211 (452)
|+++.++|+++...+ ...|.+++.++++. +.+.+ +++|++++ .+++++|+ ++|++|.+.|+++
T Consensus 81 Vi~~~~~~~~~~~~~----~~~g~~~~~v~~~~---~~~~~d~~~l~~~i------~~~~~~v~---~~n~tG~~~~l~~ 144 (388)
T 1b9h_A 81 VIVPAFTFISSSQAA----QRLGAVTVPVDVDA---ATYNLDPEAVAAAV------TPRTKVIM---PVHMAGLMADMDA 144 (388)
T ss_dssp EEEESSSCTHHHHHH----HHTTCEEEEECBCT---TTCCBCHHHHHHHC------CTTEEEEC---CBCGGGCCCCHHH
T ss_pred EEECCCccHHHHHHH----HHcCCEEEEEecCC---CcCCCCHHHHHHhc------CcCceEEE---EeCCccCcCCHHH
Confidence 999999999987665 45699999995421 11334 89999998 56788887 7889999999999
Q ss_pred HHHHHHHcCCCEEEEecccccCCcc--ccccccC-ccEEEEcCcccCcCCCCcEEEEEecCcc---ccCCCCCceeccCC
Q 012991 212 LVKICRDEGVDQVFVDAAHAMGSIK--IDVKEIG-ADFYVSNLHKWFFCPPSVAFLYCRKSIL---SSDMHHPVVSHEFG 285 (452)
Q Consensus 212 i~~l~~~~~~~~~ivD~a~~~g~~~--~~~~~~~-~d~~~~s~~K~l~g~~G~G~l~~~~~~~---~~~l~~~~~~~~~~ 285 (452)
|.++|++||+ ++|+|++|+.|... .++..++ +++.++|.+|++.|+. .|+++.+++.+ .. + ... ..++
T Consensus 145 i~~la~~~~~-~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~-~-~~~--~~~~ 218 (388)
T 1b9h_A 145 LAKISADTGV-PLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYET-A-FLR--HSCG 218 (388)
T ss_dssp HHHHHHHHTC-CBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHH-H-HHH--TBTT
T ss_pred HHHHHHHcCC-EEEEecchhcCCccCCeecccccceEEEEccCCCcccCCC-eEEEEECCHHHHHHHH-H-HHH--HhCC
Confidence 9999999999 69999999987654 3344444 4555556679877766 48888887633 32 1 000 0111
Q ss_pred CCc-c--cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc----ccccceEE
Q 012991 286 NGL-P--IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP----EICAAMVM 358 (452)
Q Consensus 286 ~~~-~--~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~ 358 (452)
... + ......|+.......++..+...+. .++...++.+++++++.+.|.+++++.+..+. ...+++++
T Consensus 219 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 294 (388)
T 1b9h_A 219 RPRDDRRYFHKIAGSNMRLNEFSASVLRAQLA----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM 294 (388)
T ss_dssp CCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE
T ss_pred CCccCccceeecccccCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEE
Confidence 100 0 0001112222122222222222222 46667788888999999999987777765432 12267888
Q ss_pred EEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC-CCCC--------CC----CCccceEEecccccC-
Q 012991 359 VGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA-GARD--------KD----GIITGYARISHQVYN- 424 (452)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~-~~~~--------~~----~~~~~~iRis~~~~~- 424 (452)
+.++.. ...+..++.+.|.+ .||.++.++.+.+....-.. .... .. ....+.+|++++..+
T Consensus 295 ~~~~~~----~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 369 (388)
T 1b9h_A 295 FRIPGL----TEERRNALVDRLVE-AGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLA 369 (388)
T ss_dssp EECTTC----CHHHHHHHHHHHHH-TTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGS
T ss_pred EEeCCc----CcccHHHHHHHHHH-CCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCC
Confidence 988620 12367789999976 49999765543210000000 0000 00 011347999999999
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
|++||++++++|+++++.
T Consensus 370 t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 370 GEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999998753
No 117
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.95 E-value=1.6e-27 Score=236.69 Aligned_cols=348 Identities=11% Similarity=0.031 Sum_probs=218.7
Q ss_pred CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCc---hhhhhhhhHHHHHHHHHHHhHh------CCCCCCcEEEecCh
Q 012991 37 QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPD---DFYFNSLRKGILESRAAVKDLI------NADDVGEISLVDNA 107 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~------~~~~~~~i~~t~g~ 107 (452)
+++++.|..+.+...|. +.+++.+.+.....++. ....|....+..++|+++++++ +++ +++|++|+|+
T Consensus 30 ~~~~i~l~~g~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~ 107 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPA-MQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIE-PQNIALTNGS 107 (417)
T ss_dssp --CCEECSCCCCCCCHH-HHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCC-GGGEEEESCH
T ss_pred CCCceEecCcCCCCCCh-HHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCC-cccEEEeCCc
Confidence 46799999887776443 44444444443322221 1123555566788899999887 454 7899999999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCC-----EEEEe-CCcchhHHHHHHHHH--HhcCcEEEEEeCCCCCCC-hHHH-HHHH
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRND-----TVLML-HCAFQAVKKSIQAYV--TRAGGSVVEVQLPFPLAS-EEEI-INEF 177 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~-----~Vl~~-~~~~~s~~~~~~~~a--~~~g~~v~~~~~~~~~~~-~~~~-~~~l 177 (452)
|+|+++++.++ .++|| +|+++ .|+|++....+.... ...+..+..++ .+. ...+ ++++
T Consensus 108 t~al~~~~~~l--------~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~l 175 (417)
T 3g7q_A 108 QSAFFYLFNLF--------AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLP----EGQFKYHVDFEHL 175 (417)
T ss_dssp HHHHHHHHHHH--------SBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEG----GGEEEEECCGGGC
T ss_pred HHHHHHHHHHH--------cCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccC----CcccccccCHHHh
Confidence 99999999987 36665 89997 999988654432210 01133444442 110 1112 4555
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc-----cccccCccEEEE
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI-----DVKEIGADFYVS 249 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~-----~~~~~~~d~~~~ 249 (452)
+ + .+++++|++++++||||.++| +++|+++|++||+ ++|+|++++.+.... .....+.++++.
T Consensus 176 ~--~------~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~ 246 (417)
T 3g7q_A 176 H--I------GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNI-PLVIDNAYGVPFPGIIFSEARPLWNPNIILCM 246 (417)
T ss_dssp C--C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-CEEEECTTCTTTTCCBCSCCCCCCCTTEEEEE
T ss_pred c--c------ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCC-EEEEeCCCccccccccccccccCCCCCEEEEE
Confidence 5 4 578999999999999999999 7788999999999 799999997532211 112235678899
Q ss_pred cCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHH----H-HH
Q 012991 250 NLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGID----G-IM 324 (452)
Q Consensus 250 s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~----~-~~ 324 (452)
|++|++.++.++|+++.++++++. + ... ...+...++...+ .++..++... .+. . ++
T Consensus 247 s~sK~~~~G~r~G~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~~~~---~~~~~~l~~~--~~~~~~~~~~~ 308 (417)
T 3g7q_A 247 SLSKLGLPGSRCGIIIANDKTITA-I-ANM-----------NGIISLAPGGMGP---AMMCEMIKRN--DLLRLSETVIK 308 (417)
T ss_dssp ESGGGTCTTSCCEEEECCHHHHHH-H-HHH-----------HHHHCCCCCSHHH---HHHHHHHHTT--CHHHHHHHTHH
T ss_pred echhccCCCcceEEEEeCHHHHHH-H-HHh-----------hcceeeCCCcHHH---HHHHHHHcCc--chHHHHHHHHH
Confidence 999953333348998888777764 1 111 0001112222232 2333333321 222 2 55
Q ss_pred HHHHHHHHHHHHHHHHH-cC--CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 325 QRNHEQALKMARMLANA-WG--TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 325 ~~~~~~~~~l~~~L~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
++++++++.+.+.|.+. ++ +.+..+.. +.++|+.++. .+.+..++.+.|.+ +||.+.++..+...+.
T Consensus 309 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--g~~~~~~~~~-----~~~~~~~l~~~l~~-~gi~v~~g~~f~~~~~-- 378 (417)
T 3g7q_A 309 PFYYQRVQQTIAIIRRYLSEERCLIHKPEG--AIFLWLWFKD-----LPITTELLYQRLKA-RGVLMVPGHYFFPGLD-- 378 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTTCEEECCCB--SSEEEEECTT-----CSSCHHHHHHHHHH-TTEECEEGGGGCTTBS--
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeeCCCc--ceEEEEEcCC-----CCCCHHHHHHHHHH-CCEEEECchhhCCCCc--
Confidence 66777888888888774 33 44444443 7788888862 14577889999965 5999987665422100
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+......+++|+|++. ++++|++++++|++++++
T Consensus 379 -----~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 379 -----KPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIER 412 (417)
T ss_dssp -----SCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHH
T ss_pred -----cccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 0000115799999985 899999999999998865
No 118
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.95 E-value=4.2e-27 Score=238.93 Aligned_cols=317 Identities=16% Similarity=0.155 Sum_probs=209.9
Q ss_pred hhhhHHHHHHHHHHHhHhC------CCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHH
Q 012991 76 NSLRKGILESRAAVKDLIN------ADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQA 149 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~------~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~ 149 (452)
|....+..++++.++++++ ++ +++|++|+|+++++..++.++. ..+||+|+++.|.|++....+.
T Consensus 130 Y~~~~G~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~-------~~~gd~Vlv~~p~y~~~~~~~~- 200 (500)
T 3tcm_A 130 YSHSQGIHGLRDAIASGIASRDGFPAN-ADDIFLTDGASPGVHLMMQLLI-------RNEKDGILVPIPQYPLYSASIA- 200 (500)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHSSCCC-GGGEEEESSSHHHHHHHHHHHC-------CSTTEEEEEEESCCTHHHHHHH-
T ss_pred cCCCcChHHHHHHHHHHHHhhcCCCCC-cccEEEcCCHHHHHHHHHHHHc-------CCCCCEEEEeCCCcHhHHHHHH-
Confidence 4444556667777777663 43 6899999999999999999872 2689999999999998766654
Q ss_pred HHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEE
Q 012991 150 YVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVF 225 (452)
Q Consensus 150 ~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~i 225 (452)
..|.+++.++++. +....+ +++|++.+++....+.++++|++++++||||.+++. ++|+++|++||+ ++|
T Consensus 201 ---~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~-~li 274 (500)
T 3tcm_A 201 ---LHGGALVPYYLNE--STGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGL-VLL 274 (500)
T ss_dssp ---HTTCEEEEEECBT--TTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEE
T ss_pred ---HcCCEEEEEeccc--ccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCC-EEE
Confidence 4599999997532 111233 888988886432223489999999999999999885 466777999999 799
Q ss_pred EecccccCCcc-----cccc---------ccCc-cEEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCC
Q 012991 226 VDAAHAMGSIK-----IDVK---------EIGA-DFYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFG 285 (452)
Q Consensus 226 vD~a~~~g~~~-----~~~~---------~~~~-d~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~ 285 (452)
+|++|+.+... .++. ..+. .+++.|+||+++|++| +|++++ ++++++. +. ...
T Consensus 275 ~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~-l~-~~~----- 347 (500)
T 3tcm_A 275 ADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQ-IY-KIA----- 347 (500)
T ss_dssp EECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHH-HH-HHH-----
T ss_pred EecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHH-HH-HHH-----
Confidence 99998763321 1111 1112 2566799998646555 688887 6666654 11 110
Q ss_pred CCcccccccccccCccccccHHHHHH-----------HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccccc
Q 012991 286 NGLPIESAWIGTRDYSAQLVIPSAVT-----------FVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA 354 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~al~-----------~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 354 (452)
....+++...+.++..++. +.. ..+.++++++++++++.+.|.+++|+.+..++. +
T Consensus 348 -------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g--~ 414 (500)
T 3tcm_A 348 -------SVNLCSNITGQILASLVMNPPKASDESYASYKA----EKDGILASLARRAKALEHAFNKLEGITCNEAEG--A 414 (500)
T ss_dssp -------HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCB--T
T ss_pred -------hcccCCCHHHHHHHHHHhcCccccchhHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCe--E
Confidence 0012334444444444443 222 356778888999999999999887888776654 5
Q ss_pred ceEEE--EcCCccc---cCChh-hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHH
Q 012991 355 AMVMV--GLPSRLR---VMGED-DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLED 428 (452)
Q Consensus 355 ~~~~~--~~~~~~~---~~~~~-~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~d 428 (452)
.++|+ .+|.... ...+. +...++..+.+++||.+.++..+.. ....+++|+++. ++.++
T Consensus 415 ~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~-------------~~g~~~iRis~~--~~~e~ 479 (500)
T 3tcm_A 415 MYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQ-------------VPGTWHFRCTIL--PQEDK 479 (500)
T ss_dssp TEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCC-------------CTTCCBEEEESC--SCTTT
T ss_pred EEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC-------------CCCCCEEEEEEC--CCHHH
Confidence 55553 3331000 00001 1222333333446999987766532 123568999999 68899
Q ss_pred HHHHHHHHHHHHhc
Q 012991 429 YEKFRDAVILLVEE 442 (452)
Q Consensus 429 i~~l~~~l~~~~~~ 442 (452)
+++++++|++++++
T Consensus 480 i~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 480 IPAVISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 119
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.95 E-value=1.1e-27 Score=230.63 Aligned_cols=300 Identities=14% Similarity=0.167 Sum_probs=199.9
Q ss_pred HHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeC
Q 012991 84 ESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQL 163 (452)
Q Consensus 84 ~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~ 163 (452)
++++.+++++|.+ +.+++++||+|+.+++.++ +++||+|+++.++|+++...+..+++..|.+++.++.
T Consensus 2 ~l~~~la~~~g~~---~~i~~~sG~~a~~~~~~~~--------~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE---ACAATASGMGAIAASVWTF--------LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM 70 (331)
T ss_dssp HHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred hHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHh--------cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC
Confidence 5789999999985 4555666699999999977 4789999999999999888876655678999999843
Q ss_pred CCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH-cCCCEEEEecccccCCcccccccc
Q 012991 164 PFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD-EGVDQVFVDAAHAMGSIKIDVKEI 242 (452)
Q Consensus 164 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~-~~~~~~ivD~a~~~g~~~~~~~~~ 242 (452)
.+ ++++++.+ .+++++|++++++||+|.+.|+++|.++|++ +|+ ++|+|++|+.|....+. ..
T Consensus 71 ----~d----~~~l~~~i------~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~-~li~D~a~~~~~~~~~~-~~ 134 (331)
T 1pff_A 71 ----AV----PGNIEKHL------KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDI-LVIVDNTFASPILTNPL-DL 134 (331)
T ss_dssp ----TS----TTHHHHTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSC-EEEEECTTTHHHHCCGG-GG
T ss_pred ----CC----HHHHHHhh------cCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCC-EEEEECCCcccccCChh-hc
Confidence 22 57788888 5689999999999999999999999999999 999 89999999887654333 35
Q ss_pred CccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC
Q 012991 243 GADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG 319 (452)
Q Consensus 243 ~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g 319 (452)
++|+++.|+||++++|.+ .|++++++ ++++. + .+.. .+. +.++.+....+++..+++.+.
T Consensus 135 ~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~-l-~~~~---~~~-------~~~~~~~~~~~~~~~~l~~~~----- 197 (331)
T 1pff_A 135 GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKV-K-SQGI---KDI-------TGAIISPHDAWLITRGTLTLD----- 197 (331)
T ss_dssp TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHH-H-HTCC---CCC-------CCCCCCHHHHHHHHHHHHHHH-----
T ss_pred CCcEEEEECccccCCCCCceEEEEEeCcHHHHHH-H-HHHH---Hhh-------cCCCCCHHHHHHHHcCcchHH-----
Confidence 789999999998777765 68999987 76654 1 1111 000 012222222222223333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--------------CcCCCc-ccccceEEEEcCCccccCChhhHHHHHHHHhhhc
Q 012991 320 IDGIMQRNHEQALKMARMLANAWGT--------------SLGSPP-EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRF 384 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 384 (452)
...++..++...+.+.+.+.+.+ .+..++ ...++++.|.++ +..++.+.|.+ .
T Consensus 198 --~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~-~ 265 (331)
T 1pff_A 198 --MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD---------GLEKAKKVLDN-C 265 (331)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS---------SHHHHHHHHHT-C
T ss_pred --HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC---------CHHHHHHHHHh-C
Confidence 12333444555555555543221 111111 124678888774 44567777865 5
Q ss_pred ceEeeecccCCCCC--CCCCCCCC--------CCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 385 GVEVPIHYQAPKDD--GQPQAGAR--------DKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 385 gI~v~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
||.++......... .+|..... ...+..++++|+|++.++|++++++++++|+++
T Consensus 266 gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 266 HVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 99775331100000 01110000 011233589999999999999999999999764
No 120
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.95 E-value=1.8e-27 Score=233.01 Aligned_cols=334 Identities=14% Similarity=0.091 Sum_probs=220.2
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND 131 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~ 131 (452)
++.+.+++.+.+... .+...+..+++++.++++++.+ ++++++|||+|+..++.++ .+++||
T Consensus 16 ~~~~~~a~~~~~~~~--------~~~~~~~~~~l~~~la~~~~~~---~~i~~~sgt~al~~~l~~l-------~~~~gd 77 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN--------WFILGDEDKKFEQEFADYCNVN---YCIGCGNGLDALHLILKGY-------DIGFGD 77 (373)
T ss_dssp HHHHHHHHHHHHHHT--------CCSSSHHHHHHHHHHHHHHTSS---EEEEESCHHHHHHHHHHHT-------TCCTTC
T ss_pred CHHHHHHHHHHHHCC--------CccCCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHc-------CCCCcC
Confidence 345666666655431 1234567899999999999984 8999999999999999976 258899
Q ss_pred EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHH
Q 012991 132 TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR 210 (452)
Q Consensus 132 ~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~ 210 (452)
+|+++.++|+++..++.. .|.+++.++.+. +.+.+ ++++++++ .+++++|+ ++|++|...|++
T Consensus 78 ~Vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~~~d~~~l~~~l------~~~~~~v~---~~n~~G~~~~l~ 141 (373)
T 3frk_A 78 EVIVPSNTFIATALAVSY----TGAKPIFVEPDI---RTYNIDPSLIESAI------TEKTKAII---AVHLYGQPADMD 141 (373)
T ss_dssp EEEEETTSCTHHHHHHHH----HSCEEEEECEET---TTTEECGGGTGGGC------CTTEEEEE---EECCTTCCCCHH
T ss_pred EEEECCCCcHHHHHHHHH----cCCEEEEEeccc---cccCcCHHHHHHhc------CCCCeEEE---EECCCcCcccHH
Confidence 999999999998777543 599999995421 22333 78888888 56888888 567899999999
Q ss_pred HHHHHHHHcCCCEEEEecccccCCccccccccC--ccEEEEcCc--ccCcCCCCcEEEEEecC-ccccCCCCCceeccCC
Q 012991 211 KLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG--ADFYVSNLH--KWFFCPPSVAFLYCRKS-ILSSDMHHPVVSHEFG 285 (452)
Q Consensus 211 ~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~--~d~~~~s~~--K~l~g~~G~G~l~~~~~-~~~~~l~~~~~~~~~~ 285 (452)
+|.++|+++|+ ++|+|++|+.|.. ++....+ .|++++|++ |++.++...|+++.+++ +.+. + .+... ++
T Consensus 142 ~i~~l~~~~~~-~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~-~-~~~~~--~g 215 (373)
T 3frk_A 142 EIKRIAKKYNL-KLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEK-I-KALSN--YG 215 (373)
T ss_dssp HHHHHHHHHTC-EEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHH-H-HHHHB--TT
T ss_pred HHHHHHHHcCC-EEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHH-H-HHHHh--cC
Confidence 99999999999 7999999998876 5544444 799999855 98655122477777654 3332 1 11110 11
Q ss_pred CCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc-cccceEEEEcCCc
Q 012991 286 NGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE-ICAAMVMVGLPSR 364 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~ 364 (452)
..........|.+ ..+..+.+++...... +++.+.++.+++.+++.+.|.+++ +.+...+. ....+..+.+.
T Consensus 216 ~~~~~~~~~~g~~--~~~~~~~aa~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-- 288 (373)
T 3frk_A 216 SEKKYHHIYKGFN--SRLDELQAGFLRVKLK--YLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIR-- 288 (373)
T ss_dssp CSBTTBCCSCCCB--CCCCHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEE--
T ss_pred cccCCcccccccc--CCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEE--
Confidence 1100011111211 1233445555544432 678888888999999999887764 55443221 12222223322
Q ss_pred cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC----CCC------CccceEEecccccCCHHHHHHHHH
Q 012991 365 LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD----KDG------IITGYARISHQVYNTLEDYEKFRD 434 (452)
Q Consensus 365 ~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~----~~~------~~~~~iRis~~~~~t~~di~~l~~ 434 (452)
..+..++.+.|.++ ||.++.++..+. ++...... ... ...+.+|++++.++|++||+++++
T Consensus 289 -----~~~~~~l~~~L~~~-gI~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~ 359 (373)
T 3frk_A 289 -----SEKRDELQKYLNNN-GIGTLIHYPIPI---HLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVID 359 (373)
T ss_dssp -----ESSHHHHHHHHHHT-TBCCBCSCSSCG---GGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred -----eCCHHHHHHHHHHC-CCCcccCcCCcc---ccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHH
Confidence 12567899999775 999976542110 11111000 000 112689999999999999999999
Q ss_pred HHHHHHh
Q 012991 435 AVILLVE 441 (452)
Q Consensus 435 ~l~~~~~ 441 (452)
+|+++..
T Consensus 360 ~l~~~~~ 366 (373)
T 3frk_A 360 KINAWKL 366 (373)
T ss_dssp HHHTCC-
T ss_pred HHHHHhh
Confidence 9988654
No 121
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=6.2e-27 Score=231.18 Aligned_cols=344 Identities=13% Similarity=0.142 Sum_probs=220.9
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
+.+.+..++...-+.+.+++..+.... ....+.....+..+++++++++++|.+ +.+++++|++|+..++.++
T Consensus 27 ~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~a~~~~l~~~- 99 (398)
T 2rfv_A 27 LSTPIFQTSTFVFDSAEQGAARFALEE---SGYIYTRLGNPTTDALEKKLAVLERGE---AGLATASGISAITTTLLTL- 99 (398)
T ss_dssp SSCCCCCCSBCCCSSHHHHHHHC--------CCSBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH-
T ss_pred cCCCCcCCCccccCCHHHHHHhhcCCC---CCCceeCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH-
Confidence 444554444444444555554211111 111233335678899999999999984 6677777889999999987
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEecc
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHI 199 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~ 199 (452)
+++||+|++++++|+++...+..++...|.+++.++. ++ ++++++.+ .+++++|+++++
T Consensus 100 -------~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~d----~~~l~~~i------~~~~~~v~~~~~ 158 (398)
T 2rfv_A 100 -------CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA----AK----PEEIRAAM------RPETKVVYIETP 158 (398)
T ss_dssp -------CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT----TS----HHHHHHHC------CTTEEEEEEESS
T ss_pred -------hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC----CC----HHHHHHhc------CCCCeEEEEECC
Confidence 4789999999999999888886656778999999943 32 68888888 568999999999
Q ss_pred CCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCC
Q 012991 200 TSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHH 277 (452)
Q Consensus 200 ~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~ 277 (452)
+||+|.+.|+++|+++|++||+ ++|+|++++.+...... ..++|+++.|+||+++++.+ .|+++++++++.. ...
T Consensus 159 ~nptG~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~-~~~ 235 (398)
T 2rfv_A 159 ANPTLSLVDIETVAGIAHQQGA-LLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQ-ARF 235 (398)
T ss_dssp BTTTTBCCCHHHHHHHHHHTTC-EEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHH-HHH
T ss_pred CCCCCcccCHHHHHHHHHHcCC-EEEEECCCcccccCCch-hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHH-HHH
Confidence 9999999999999999999999 79999999987653222 35789999999998766655 4999998877652 011
Q ss_pred CceeccCCCCccccccc-ccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-------------
Q 012991 278 PVVSHEFGNGLPIESAW-IGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG------------- 343 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~------------- 343 (452)
+.. ..+ .++.+...+.+...+++. .....++..++.+.+.+.|.+.+.
T Consensus 236 ~~~-----------~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p 297 (398)
T 2rfv_A 236 VGL-----------KDITGGCMSPFNAWLTLRGVKT-------LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHP 297 (398)
T ss_dssp THH-----------HHTTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTST
T ss_pred HHH-----------HhCCCCCCCHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc
Confidence 111 001 123333233333333322 233344456667777777766421
Q ss_pred -CCcCCCc-ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC--------CCCCcc
Q 012991 344 -TSLGSPP-EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD--------KDGIIT 413 (452)
Q Consensus 344 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~--------~~~~~~ 413 (452)
+++..++ ...+++++|.++. ...+...+.+.+.. .|+.+..+..+.-- .+|...... ..+..+
T Consensus 298 ~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~l~~~~~~-~~i~~~~G~~~~li-~~~~~~~~~~~~~~~~~~~g~~~ 370 (398)
T 2rfv_A 298 QYELGQRQMSLPGGIISFEIAG-----GLEAGRRMINSVEL-CLLAVSLGDTETLI-QHPASMTHSPVAPEERLKAGITD 370 (398)
T ss_dssp THHHHHHHCSSCCSEEEEEETT-----HHHHHHHHHTTCSS-SEECSCCSSSSCEE-ECHHHHTSSSSCHHHHHHTTCCT
T ss_pred cHHHHHhhCCCCceEEEEEEcC-----CHHHHHHHHHhCCc-ceeccCCCCcceee-ecccccccccCCHHHHHhcCCCC
Confidence 1111111 1247888888861 11234445555433 37766544211000 000000000 002236
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHH
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+.+|+|++..+++++|+++.++|+++
T Consensus 371 ~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 371 GLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp TEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 89999999999999999999999764
No 122
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.95 E-value=7.4e-27 Score=230.05 Aligned_cols=348 Identities=14% Similarity=0.062 Sum_probs=229.0
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
.+++.++.+.+... +.+.+++.+.+... .+. ...+...++++.++++++.+ ++++++|||+|+.+++.+
T Consensus 22 ~~~~~l~~~~p~~~-~~~~~a~~~~~~~~------~~~-~~~~~~~~l~~~la~~~~~~---~~i~~~~gt~al~~~l~~ 90 (391)
T 3dr4_A 22 SDLPRISVAAPRLD-GNERDYVLECMDTT------WIS-SVGRFIVEFEKAFADYCGVK---HAIACNNGTTALHLALVA 90 (391)
T ss_dssp ------CCCCCCCC-SSHHHHHHHHHHHT------CCS-SCSHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHH
T ss_pred CCCceeccCCCCCC-HHHHHHHHHHHHcC------Ccc-CCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHH
Confidence 35667776665444 55888888776531 111 13567899999999999984 889999999999999998
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ .+++||+|+++.++|+++..++. ..|.+++.++++. +++.+ ++++++++ .+++++|++
T Consensus 91 ~-------~~~~gd~vl~~~~~~~~~~~~~~----~~g~~~~~~~~~~---~~~~~d~~~l~~~~------~~~~~~v~~ 150 (391)
T 3dr4_A 91 M-------GIGPGDEVIVPSLTYIASANSVT----YCGATPVLVDNDP---RTFNLDAAKLEALI------TPRTKAIMP 150 (391)
T ss_dssp H-------TCCTTCEEEEESSSCTHHHHHHH----HTTCEEEEECBCT---TTCSBCGGGSGGGC------CTTEEEECC
T ss_pred c-------CCCCcCEEEECCCchHHHHHHHH----HCCCEEEEEecCc---cccCcCHHHHHHhc------CCCceEEEE
Confidence 7 25889999999999999877664 4699999995421 22233 78888888 568888884
Q ss_pred eccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccc--cccCccEEEEc--CcccCcCCCCcEEEEEecC-cc
Q 012991 197 DHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDV--KEIGADFYVSN--LHKWFFCPPSVAFLYCRKS-IL 271 (452)
Q Consensus 197 ~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~--~~~~~d~~~~s--~~K~l~g~~G~G~l~~~~~-~~ 271 (452)
+|+||...|+++|.++|+++|+ ++|+|++|+.|....+. ..+ .|++++| .+|++.++. .|+++.+++ +.
T Consensus 151 ---~n~tG~~~~~~~i~~l~~~~~~-~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~-gg~~~~~~~~~~ 224 (391)
T 3dr4_A 151 ---VHLYGQICDMDPILEVARRHNL-LVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGE-GGMITTNDDDLA 224 (391)
T ss_dssp ---BCGGGCCCCHHHHHHHHHHTTC-EEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBS-CEEEEESCHHHH
T ss_pred ---ECCCCChhhHHHHHHHHHHcCC-EEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCC-eEEEEECCHHHH
Confidence 5689999999999999999999 89999999987764432 222 3566666 669976655 477777654 33
Q ss_pred ccCCCCCceeccCCCC--cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 012991 272 SSDMHHPVVSHEFGNG--LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP 349 (452)
Q Consensus 272 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 349 (452)
+. + ..... ++.. ........+.. .....+.+++...... +++.+.++.+++.+++.+.|.++ ++.+..+
T Consensus 225 ~~-~-~~~~~--~g~~~~~~~~~~~~g~~--~~~~~l~aa~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 295 (391)
T 3dr4_A 225 AK-M-RLLRG--QGMDPNRRYWFPIVGFN--YRMTNIQAAIGLAQLE--RVDEHLAARERVVGWYEQKLARL-GNRVTKP 295 (391)
T ss_dssp HH-H-HHHHB--TTCCTTSTTCCSSCCCB--CBCCHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHGGG-TTSEECC
T ss_pred HH-H-HHHHh--cCCCCCCcccccccccc--cCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC-CccccCc
Confidence 22 1 11110 1110 00000001111 1334445555544432 78888999999999999999988 8776554
Q ss_pred --cc---cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC----CC----CCccceE
Q 012991 350 --PE---ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD----KD----GIITGYA 416 (452)
Q Consensus 350 --~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~----~~----~~~~~~i 416 (452)
+. ....++++.++.. .+.+..++.+.|.++ ||.++.++.+.+ |...... .. ......+
T Consensus 296 ~~~~~~~~~~~~~~i~~~~~----~~~~~~~l~~~L~~~-GI~v~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~l 366 (391)
T 3dr4_A 296 HVALTGRHVFWMYTVRLGEG----LSTTRDQVIKDLDAL-GIESRPVFHPMH----IMPPYAHLATDDLKIAEACGVDGL 366 (391)
T ss_dssp CCCTTSCCCCSSEEEEECSS----CSSCHHHHHHHHHHT-TCCCEECCCCGG----GSGGGGGGCCTTCHHHHHHHHHEE
T ss_pred CCCCCCcceeEEEEEEECCc----cchhHHHHHHHHHHC-CCceeecCCccc----cChhhhhcCcCCChHHHHHHhCeE
Confidence 21 2233456666521 145678899999775 999976543211 1111100 00 0124689
Q ss_pred EecccccCCHHHHHHHHHHHHHHH
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~ 440 (452)
|++++.++|++||++++++|++++
T Consensus 367 rl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 367 NLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp EECCCTTCCHHHHHHHHHHHHTTC
T ss_pred EccCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 123
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.95 E-value=1.8e-27 Score=238.48 Aligned_cols=358 Identities=11% Similarity=-0.009 Sum_probs=231.9
Q ss_pred CCCeE-EeccCCCCCCcHHHHHHHHHHHHHHhcC-------Cc---hhhhhhhhHHHHHHHHHHHhHh------CCCCCC
Q 012991 37 QHGVA-RINNGSFGSCPKSVLADQQKWQLKFLQQ-------PD---DFYFNSLRKGILESRAAVKDLI------NADDVG 99 (452)
Q Consensus 37 ~~~~~-~l~~~~~~~~p~~v~e~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~la~~~------~~~~~~ 99 (452)
.++++ +|+.+.+.. ++.+.+++.+.+.....+ +. ....|....+..++|+.+++++ +++ ++
T Consensus 30 ~~~~i~~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-~~ 107 (444)
T 3if2_A 30 SDQPVNMLGGGNPAK-IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT-SE 107 (444)
T ss_dssp SSSCCEECSCCCCCC-CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC-GG
T ss_pred CchhhhccCCCCCCc-ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC-HH
Confidence 36788 999887776 444778888777766666 53 1234555556788888888887 454 78
Q ss_pred cEEEecChhHHHHHHHHHhhcccccCCCCCCC--------------EEEEe-CCcchhHHHHHHH--HHHhcCcEEEEEe
Q 012991 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRND--------------TVLML-HCAFQAVKKSIQA--YVTRAGGSVVEVQ 162 (452)
Q Consensus 100 ~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~--------------~Vl~~-~~~~~s~~~~~~~--~a~~~g~~v~~~~ 162 (452)
+|++|+|+|+|+++++.++ .++|| +|+++ .|+|+++...+.. .....|..+..++
T Consensus 108 ~i~~t~G~t~al~~~~~~l--------~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (444)
T 3if2_A 108 NIALTNGSQNAFFYLFNLF--------GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVT 179 (444)
T ss_dssp GEEEESSHHHHHHHHHHHS--------SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEE
T ss_pred HEEEecCcHHHHHHHHHHH--------hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecc
Confidence 9999999999999999987 35666 78775 8888876432100 0123467777774
Q ss_pred CCCCCCC-h----HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccC
Q 012991 163 LPFPLAS-E----EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 163 ~~~~~~~-~----~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
+ +. + ..+ +++|++++++. ++++++|++++++||||.++| +++|+++|++||+ ++|+|++|+.+
T Consensus 180 ~----~~~~g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~-~li~De~~~~~ 251 (444)
T 3if2_A 180 H----DGEEGFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDI-PLIIDNAYGMP 251 (444)
T ss_dssp E----TTEEEEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-CEEEECTTCTT
T ss_pred c----ccccCccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCC-EEEEECCCCCc
Confidence 3 22 1 123 78888874221 578999999999999999999 7788999999999 79999999753
Q ss_pred Ccccc-----ccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 234 SIKID-----VKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 234 ~~~~~-----~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
..... ....+.++++.|+||++.++.++|+++.+++++.. + ... ......+.+...+.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~-~-~~~-----------~~~~~~~~~~~~~~a~~~ 318 (444)
T 3if2_A 252 FPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEA-V-SAM-----------NAVVNLAPTRFGAAIATP 318 (444)
T ss_dssp TTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHH-H-HHH-----------HHHHHSSCCCHHHHHHHH
T ss_pred ccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHH-H-HHH-----------HHhccCCCChHHHHHHHH
Confidence 32221 12235678999999963333447888887777664 1 111 000011222223322222
Q ss_pred HHHHHHHhhcCHH-HHHHHHHHHHHHHHHHHHHH-cC--CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhc
Q 012991 309 AVTFVSRFEGGID-GIMQRNHEQALKMARMLANA-WG--TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRF 384 (452)
Q Consensus 309 al~~~~~~~~g~~-~~~~~~~~~~~~l~~~L~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 384 (452)
+++..... .... .++++++++++.+.+.|.+. ++ +.+..+.. +.++++.++. .+.+..++.+.|.+ +
T Consensus 319 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--g~~~~~~~~~-----~~~~~~~l~~~l~~-~ 389 (444)
T 3if2_A 319 LVANDRIK-QLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEG--AIFLWLWFKD-----LPISTLDLYERLKA-K 389 (444)
T ss_dssp HHHTSHHH-HHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCB--SSEEEEEETT-----CSSCHHHHHHHHHH-T
T ss_pred HHHcCchh-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCc--cEEEEEEcCC-----CCCCHHHHHHHHHH-C
Confidence 22211100 0112 25556677778888888764 33 33444433 6788888762 14577889999865 5
Q ss_pred ceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 385 GVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 385 gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
||.+.++..+...... . . .....+++|||++. ++++|++++++|++++++
T Consensus 390 gi~v~~g~~~~~~~~~-~--~---~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 390 GTLIVPSEYFFPGVDV-S--D---YQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp TEECEEGGGSCTTCCC-T--T---CSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHH
T ss_pred CeEEecchhhcCCCCC-c--c---cccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHH
Confidence 9999877665221000 0 0 00124799999997 899999999999998864
No 124
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.95 E-value=1.3e-26 Score=228.27 Aligned_cols=344 Identities=16% Similarity=0.115 Sum_probs=225.1
Q ss_pred CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC
Q 012991 51 CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN 130 (452)
Q Consensus 51 ~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g 130 (452)
.|+.+.+++.+.+.... +...+...++++.++++++.+ ++++|+|||+|+.+++.++ .+++|
T Consensus 18 ~~~~~~~a~~~~~~~~~--------~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~al~~~~~~~-------~~~~g 79 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGW--------ITTGPKNQELEAAFCRLTGNQ---YAVAVSSATAGMHIALMAL-------GIGEG 79 (393)
T ss_dssp CCHHHHHHHHHHHHHTC--------CSSSHHHHHHHHHHHHHHCCS---EEEEESCHHHHHHHHHHHT-------TCCTT
T ss_pred CCHHHHHHHHHHHhcCC--------cCCChHHHHHHHHHHHHhCCC---cEEEecChHHHHHHHHHHc-------CCCCC
Confidence 45668888888775421 112456889999999999984 7999999999999999976 24789
Q ss_pred CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh-HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc
Q 012991 131 DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE-EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP 208 (452)
Q Consensus 131 ~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~-~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~ 208 (452)
|+|+++.++|+++...+ ...|.+++.+++ +.+ +.+ ++++++++ .+++++|++++ ++|...|
T Consensus 80 d~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~----~~~~~~~d~~~l~~~l------~~~~~~v~~~~---~~G~~~~ 142 (393)
T 1mdo_A 80 DEVITPSMTWVSTLNMI----VLLGANPVMVDV----DRDTLMVTPEHIEAAI------TPQTKAIIPVH---YAGAPAD 142 (393)
T ss_dssp CEEEEESSSCHHHHHHH----HHTTCEEEEECB----CTTTCCBCHHHHHHHC------CTTEEEECCBC---GGGCCCC
T ss_pred CEEEeCCCccHhHHHHH----HHCCCEEEEEec----cCCcCCCCHHHHHHhc------CCCceEEEEeC---CCCCcCC
Confidence 99999999999986655 446999999954 222 234 89999998 46789988864 7899999
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCCccccccccC-ccEEEEcCc--ccCcCCCCcEEEEEe-cCccccCCCCCceeccC
Q 012991 209 VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG-ADFYVSNLH--KWFFCPPSVAFLYCR-KSILSSDMHHPVVSHEF 284 (452)
Q Consensus 209 l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~-~d~~~~s~~--K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~ 284 (452)
+++|.++|+++|+ ++|+|++|+.|... +...++ .|++++|+| |++.++. .|+++.+ +++++. + .+......
T Consensus 143 ~~~i~~l~~~~~~-~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~-~g~~~~~~~~~~~~-l-~~~~~~~~ 217 (393)
T 1mdo_A 143 LDAIYALGERYGI-PVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAE-GGIVVTDNPQFADK-L-RSLKFHGL 217 (393)
T ss_dssp HHHHHHHHHHHTC-CBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSS-CEEEEESCHHHHHH-H-HHHTBTTE
T ss_pred HHHHHHHHHHcCC-eEEEECccccCCeE-CCeecCCCCeEEEeCCCCCcccccc-ceEEEeCCHHHHHH-H-HHHHhcCC
Confidence 9999999999999 79999999987543 222334 899999999 9876655 5888886 555543 1 11100000
Q ss_pred CC----------CcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc----
Q 012991 285 GN----------GLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP---- 350 (452)
Q Consensus 285 ~~----------~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---- 350 (452)
.. .........|+......++...++..+. +++++.++.+++++++.+.|.+++ +++...+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~ 292 (393)
T 1mdo_A 218 GVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ----KLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEH 292 (393)
T ss_dssp ECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCE
T ss_pred cccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCC
Confidence 00 0000000112111111112222233333 567778888889999999998874 6654322
Q ss_pred ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC-----ccceEEecccccCC
Q 012991 351 EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI-----ITGYARISHQVYNT 425 (452)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iRis~~~~~t 425 (452)
...+.++++.++... .+.+..++.+.|.+ .||.++.++.+................. ...++|++++.++|
T Consensus 293 ~~~~~~~~v~~~~~~---~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 368 (393)
T 1mdo_A 293 IHAWHLFIIRVDEAR---CGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMT 368 (393)
T ss_dssp ECCCSCEEEECCHHH---HSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCC
T ss_pred CceeEEEEEEecccc---cccCHHHHHHHHHh-CCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCC
Confidence 122457888875100 02467789999977 4999876543310000000000000000 13489999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 012991 426 LEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 426 ~~di~~l~~~l~~~~~~~ 443 (452)
++|+++++++|+++++..
T Consensus 369 ~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 369 ESDFDRVITALHQIAGQG 386 (393)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999998764
No 125
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.95 E-value=4.2e-27 Score=230.21 Aligned_cols=346 Identities=16% Similarity=0.114 Sum_probs=227.8
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
++.+..+.+...+ +.+++.+.+... .+...+...++++.++++++.+ ++++++|||+|+.+++.++
T Consensus 8 ~~~l~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~~~~~- 73 (374)
T 3uwc_A 8 YSYLERQFADIEP--YLNDLREFIKTA--------DFTLGAELEKFEKRFAALHNAP---HAIGVGTGTDALAMSFKML- 73 (374)
T ss_dssp SCCHHHHTSSCHH--HHHHHHHHHHHT--------CCSSCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHHHT-
T ss_pred eeccccCCCCchH--HHHHHHHHHHcC--------CcccChhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHc-
Confidence 3444444333333 788887766432 1234567899999999999984 7899999999999999876
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
.+++||+|+++.++|++....+ ...|.+++.++. ++++.+ ++++++.+ .+++++|+
T Consensus 74 ------~~~~gd~v~~~~~~~~~~~~~~----~~~g~~~~~~~~----~~~~~~d~~~l~~~~------~~~~~~v~--- 130 (374)
T 3uwc_A 74 ------NIGAGDEVITCANTFIASVGAI----VQAGATPVLVDS----ENGYVIDPEKIEAAI------TDKTKAIM--- 130 (374)
T ss_dssp ------TCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEECB----CTTSSBCGGGTGGGC------CTTEEEEC---
T ss_pred ------CCCCCCEEEECCCccHHHHHHH----HHcCCEEEEEec----CCCCCcCHHHHHHhC------CCCceEEE---
Confidence 2588999999999999976665 456999999954 333333 78888888 56788888
Q ss_pred cCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccC--ccEEEEcCc--ccCcCCCCcEEEEEecC-cccc
Q 012991 199 ITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG--ADFYVSNLH--KWFFCPPSVAFLYCRKS-ILSS 273 (452)
Q Consensus 199 ~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~--~d~~~~s~~--K~l~g~~G~G~l~~~~~-~~~~ 273 (452)
++||+|.+.|+++|.++|+++|+ ++|+|++|+.|.. ++....+ +|++++|+| |++.++...|+++.+++ +.+.
T Consensus 131 ~~n~~G~~~~~~~i~~~~~~~~~-~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~ 208 (374)
T 3uwc_A 131 PVHYTGNIADMPALAKIAKKHNL-HIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEK 208 (374)
T ss_dssp CBCGGGCCCCHHHHHHHHHHTTC-EEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHH
T ss_pred EeCCcCCcCCHHHHHHHHHHcCC-EEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHH
Confidence 77899999999999999999999 8999999998765 3333333 699999977 98655222577777653 3222
Q ss_pred CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCcCCCcc-
Q 012991 274 DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSLGSPPE- 351 (452)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~- 351 (452)
+ ..... .+..........+ .++ ....+.+++..... ++++.+.++.+++.+++.+.|.++++ +.+...+.
T Consensus 209 -~-~~~~~--~~~~~~~~~~~~~-~~~-~~~~~~aa~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 280 (374)
T 3uwc_A 209 -L-RLYRN--HGLINRDVCVEYG-INC-RMDTIQAVIANRLM--NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREG 280 (374)
T ss_dssp -H-HHHTB--TTEEETTEESSCC-CBC-BCCHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTT
T ss_pred -H-HHHHh--cCccccCcccccc-ccC-CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCC
Confidence 1 11100 0000000000001 111 33445555555443 26788888999999999999988866 66543322
Q ss_pred cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCC------CC----CCccceEEeccc
Q 012991 352 ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARD------KD----GIITGYARISHQ 421 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~------~~----~~~~~~iRis~~ 421 (452)
....+..+.+. ..+..++.+.|.++ ||.++.++..+- ++...... .. ....+.+|++++
T Consensus 281 ~~~~~~~~~~~-------~~~~~~l~~~L~~~-gi~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~ 349 (374)
T 3uwc_A 281 VYHVFHIYVLR-------VKYRDQLFQYLKDN-GIEVKIHYPIAM---HLQPAAKSLGYQQGDFPMAEKHGEAVITLPAH 349 (374)
T ss_dssp EECCCSSEEEE-------ETTHHHHHHHHHHT-TBCCBCSCSSCG---GGSGGGGGGCCCTTSCHHHHHHHHHEEEECCC
T ss_pred CceeeEEEEEE-------cCCHHHHHHHHHHC-CCccccCCCCcc---ccChhhhhcCCccCCCccHHHHHhCEEEccCC
Confidence 11222223221 12567899999775 999876541100 00000000 00 011278999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhcc
Q 012991 422 VYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.++|++||++++++|++++++.
T Consensus 350 ~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 350 PYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998763
No 126
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.95 E-value=2.8e-27 Score=229.14 Aligned_cols=333 Identities=16% Similarity=0.161 Sum_probs=218.5
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
+.+++|+.+....+++.+.+++.+.. .... .+.......++++++++++|.+ .+++++|||+|+.+++.+
T Consensus 3 ~~~i~~~~~~~~~p~~~~~~a~~~~~-----~~~~--~y~~~~~~~~l~~~la~~~g~~---~~~~~~~gt~a~~~~~~~ 72 (347)
T 1jg8_A 3 HMMIDLRSDTVTKPTEEMRKAMAQAE-----VGDD--VYGEDPTINELERLAAETFGKE---AALFVPSGTMGNQVSIMA 72 (347)
T ss_dssp --CEECSCGGGCCCCHHHHHHHHTCC-----CCCG--GGTCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHH
T ss_pred ceEEEeccccCCCCCHHHHHHHhcCC-----CCCc--ccCCChHHHHHHHHHHHHhCCc---eEEEecCcHHHHHHHHHH
Confidence 35689988887777777888876431 1111 2334556789999999999984 678999999999988887
Q ss_pred hhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEE
Q 012991 118 IGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAII 196 (452)
Q Consensus 118 l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~ 196 (452)
+ +++||+|++++++|.+.+.... ++...|.+++.+ .. +++.+ ++++++++++.....+++++|++
T Consensus 73 ~--------~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v-~~----~~~~~d~~~l~~~i~~~~~~~~~~~~v~~ 138 (347)
T 1jg8_A 73 H--------TQRGDEVILEADSHIFWYEVGA-MAVLSGVMPHPV-PG----KNGAMDPDDVRKAIRPRNIHFPRTSLIAI 138 (347)
T ss_dssp H--------CCTTCEEEEETTCHHHHSSTTH-HHHHTCCEEEEE-CE----ETTEECHHHHHHHSCCSCTTSCCEEEEEE
T ss_pred h--------cCCCCEEEEcCcchhhhccccc-hhhccCeEEEEe-cC----CCCccCHHHHHHHhccccccccCceEEEE
Confidence 6 5799999999999987543211 145568888887 31 12223 88999988421000137999999
Q ss_pred eccCCCC-cccccH---HHHHHHHHHcCCCEEEEecccccCC---ccccccc--cCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 197 DHITSMP-CVVIPV---RKLVKICRDEGVDQVFVDAAHAMGS---IKIDVKE--IGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 197 ~~~~n~t-G~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~---~~~~~~~--~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
++++||| |.++|. ++|.++|+++|+ ++++|+++..+. .+.+... .++|.+++|+||+++++.| ++++.+
T Consensus 139 ~~~~npt~G~~~~~~~l~~i~~~a~~~~~-~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G-~~~~~~ 216 (347)
T 1jg8_A 139 ENTHNRSGGRVVPLENIKEICTIAKEHGI-NVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVG-SVVVGD 216 (347)
T ss_dssp ESSBTTTTSBCCCHHHHHHHHHHHHHHTC-EEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSC-EEEEEC
T ss_pred eccccccCCccCcHHHHHHHHHHHHHCCC-EEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCce-EEEEcC
Confidence 9999999 999875 578899999999 899999875432 1122221 2578888999998766654 456666
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + ..... .++ ++.......+ ..+...+.. ..+.+. +..++++++.+.|.++ ++.+.
T Consensus 217 ~~~~~~-~-~~~~~-~~~----------~~~~~~~~~~-~~~~~~l~~---~~~~~~-~~~~~~~~l~~~L~~~-~~~~~ 277 (347)
T 1jg8_A 217 RDFIER-A-RKARK-MLG----------GGMRQAGVLA-AAGIIALTK---MVDRLK-EDHENARFLALKLKEI-GYSVN 277 (347)
T ss_dssp HHHHHH-H-HHHHH-HHT----------CCCSSTHHHH-HHHHHHHHH---SSTTHH-HHHHHHHHHHHHHHHH-TCBCC
T ss_pred HHHHHH-H-HHHHH-HcC----------CchhHHHHHH-HHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHhc-Cceec
Confidence 666553 1 11100 011 1111111111 111222222 122222 3345678888899888 77653
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
.++ ..++++++.++. .+.+..++.+.|.+ .||.+..+. .+++|++++.+++++
T Consensus 278 ~~~-~~~~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~~~--------------------~~~iRl~~~~~~~~e 330 (347)
T 1jg8_A 278 PED-VKTNMVILRTDN-----LKVNAHGFIEALRN-SGVLANAVS--------------------DTEIRLVTHKDVSRN 330 (347)
T ss_dssp GGG-CCSSEEEEECTT-----SSSCHHHHHHHHHH-HTEECEEEE--------------------TTEEEEECCTTSCHH
T ss_pred cCC-CcceEEEEEccc-----ccCCHHHHHHHHHH-CCCEEecCC--------------------CCeEEEEeCCCCCHH
Confidence 222 236788888862 13467789999976 499986421 358999998889999
Q ss_pred HHHHHHHHHHHHHhc
Q 012991 428 DYEKFRDAVILLVEE 442 (452)
Q Consensus 428 di~~l~~~l~~~~~~ 442 (452)
|+++++++|+++++.
T Consensus 331 ~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 331 DIEEALNIFEKLFRK 345 (347)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
No 127
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.95 E-value=2.6e-28 Score=244.21 Aligned_cols=290 Identities=12% Similarity=0.127 Sum_probs=215.5
Q ss_pred hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 77 SLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
.......++++.+++ +|++ +++++|+|+|+|+.+++.++ +++||+|++++++|+++..++.. .|.
T Consensus 54 ~~~~~~~~~~~~la~-~g~~--~~v~~~~G~t~a~~~~~~a~--------~~~gd~Vlv~~~~h~s~~~~~~~----~G~ 118 (446)
T 2x3l_A 54 HPEEVILKSMKQVEK-HSDY--DGYFLVNGTTSGILSVIQSF--------SQKKGDILMARNVHKSVLHALDI----SQQ 118 (446)
T ss_dssp SCSSHHHHHHHHHCS-CTTE--EEEEESSHHHHHHHHHHHTT--------TTSSSCEEECTTCCHHHHHHHHH----HTC
T ss_pred CcchHHHHHHHHHHh-cCCC--ceEEEeCCHHHHHHHHHHHh--------cCCCCEEEEecCccHHHHHHHHH----cCC
Confidence 345568999999999 9995 78999999999999999976 58899999999999999887755 488
Q ss_pred EEEEEeCCCCCCCh----HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccc
Q 012991 157 SVVEVQLPFPLASE----EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 157 ~v~~~~~~~~~~~~----~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~ 231 (452)
+++.++... +++ +.+ +++| + ++++++|++++ .|++|.+.|+++|+++|++||+ ++|+|++|+
T Consensus 119 ~~~~v~~~~--~~~~~~~~~~d~~~l---~------~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~-~livDea~~ 185 (446)
T 2x3l_A 119 EGHFIETHQ--SPLTNHYNKVNLSRL---N------NDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNI-PVLIDEAHG 185 (446)
T ss_dssp CEEECEEEE--CTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTC-CEEEECTTC
T ss_pred eEEEEeCee--ccccCcCCCCCHHHH---c------CCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCC-eEEEcchhh
Confidence 888886411 221 222 4555 3 46789999999 5669999999999999999999 699999988
Q ss_pred cCCc-----cccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccH
Q 012991 232 MGSI-----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVI 306 (452)
Q Consensus 232 ~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (452)
. .. +.+....++|+++.|+||+++|+.|+|+++++++.++. .++... ...+..+++++..+.++
T Consensus 186 ~-~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~---~~~~~~-------~~~~~~~s~~~~~~aal 254 (446)
T 2x3l_A 186 A-HFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYR---ENIIEY-------LSYFQTSSPSYLIMASL 254 (446)
T ss_dssp T-TTTSTTSCCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTH---HHHHHH-------HHHHSCSSCCHHHHHHH
T ss_pred h-hhccCCCCCChHHcCCCEEEECCccccccccccEEEEEcCCcCCH---HHHHHH-------HHHHcCCCchHHHHHHH
Confidence 6 22 44555567899999999998999899999998886541 111000 01123467777777777
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcce
Q 012991 307 PSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGV 386 (452)
Q Consensus 307 ~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 386 (452)
.++++++... |.+++.++.+++++++++. ++++..+.. ...+++.++ +.+..++.+.|.++ ||
T Consensus 255 ~~a~~~l~~~--g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~--~~~l~i~~~-------~~~~~~l~~~L~~~-GI 317 (446)
T 2x3l_A 255 ESAAQFYKTY--DSTLFFAKRAQLIECLENK-----GFEMLQVDD--PLKLLIKYE-------GFTGHDIQNWFMNA-HI 317 (446)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHHHH-----TCEEEECSS--TTEEEEECT-------TSCHHHHHHHHHHT-TE
T ss_pred HHHHHHHHHh--CHHHHHHHHHHHHHHHHHc-----CCEECcCCC--CeEEEEEeC-------CcCHHHHHHHHHHC-CC
Confidence 7788888864 6666777777777777665 666554432 335777774 45677899999876 99
Q ss_pred EeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 387 EVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 387 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.+... ..+++|++++.++|++|+ +++++|+++.+..
T Consensus 318 ~v~~~--------------------g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 318 YLELA--------------------DDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp EESEE--------------------CSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred EEEec--------------------CCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 98511 125899999999999999 9999999998654
No 128
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.95 E-value=7.2e-28 Score=238.22 Aligned_cols=343 Identities=16% Similarity=0.153 Sum_probs=229.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHh--cCCchh-h-h-hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhc
Q 012991 46 GSFGSCPKSVLADQQKWQLKFL--QQPDDF-Y-F-NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGR 120 (452)
Q Consensus 46 ~~~~~~p~~v~e~~~~~~~~~~--~~~~~~-~-~-~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~ 120 (452)
.+.++.|+.+.+++.+.+.... +++... + + ....++.+.+++++++++|.+ ...+++++||+|+.+++.++
T Consensus 30 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~--~~~i~~~sGt~a~~~a~~~~-- 105 (405)
T 2vi8_A 30 ASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE--HANVQPHSGAQANMAVYFTV-- 105 (405)
T ss_dssp TTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHH--
T ss_pred cCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC--ceEEEecCcHHHHHHHHHHh--
Confidence 3345558889999988763211 112111 1 1 123345556889999999996 34444555699999999987
Q ss_pred ccccCCCCCCCEEEEeCCcchhHHHHHH--HHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEe
Q 012991 121 GFTEGRFHRNDTVLMLHCAFQAVKKSIQ--AYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 121 ~~~~~~~~~g~~Vl~~~~~~~s~~~~~~--~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
+++||+|+++.++|+++...+. .+.. .+.++..++++ ...+.+ ++++++++++ .++++|+++
T Consensus 106 ------~~~gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~---~~~~~~d~~~l~~~i~~-----~~~~~v~~~ 170 (405)
T 2vi8_A 106 ------LEHGDTVLGMNLSHGGHLTHGSPVNFSG-VQYNFVAYGVD---PETHVIDYDDVREKARL-----HRPKLIVAA 170 (405)
T ss_dssp ------CCTTCEEEEECGGGTCCTTTTCTTSHHH-HHSEEEEECBC---TTTCSBCHHHHHHHHHH-----HCCSEEEEC
T ss_pred ------cCCCCEEEEecccccchhcccchhhhcc-ceeEEEecccc---cccCCcCHHHHHHHHHh-----cCCeEEEEe
Confidence 4789999999999987643111 0111 13467766431 022333 8899998852 267888774
Q ss_pred ccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccccccc---CccEEEEcCcccCcCCCCcEEEEEecCccccC
Q 012991 198 HITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEI---GADFYVSNLHKWFFCPPSVAFLYCRKSILSSD 274 (452)
Q Consensus 198 ~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~ 274 (452)
+++ .|...++++|.++|++||+ ++|+|++|+.|..+.+.... .+|++++|+||+++|+.| |++++++++++.
T Consensus 171 -~~~-~~~~~~l~~i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~- 245 (405)
T 2vi8_A 171 -AAA-YPRIIDFAKFREIADEVGA-YLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQ- 245 (405)
T ss_dssp -CSS-CCSCCCHHHHHHHHHHHTC-EEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHH-
T ss_pred -CCC-CCccCCHHHHHHHHHHcCC-EEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHH-
Confidence 333 4677799999999999999 79999999876443332222 579999999999777898 999998776654
Q ss_pred CCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccccc
Q 012991 275 MHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICA 354 (452)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 354 (452)
+ .+.. . ....++++.....++.++++.+... +++.++++.+++++++.+.|.++ ++++..+.. .+
T Consensus 246 l-~~~~---~-------~~~~~~~~~~~~aa~~~al~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~ 310 (405)
T 2vi8_A 246 I-DKAI---F-------PGIQGGPLMHVIAAKAVAFGEALQD--DFKAYAKRVVDNAKRLASALQNE-GFTLVSGGT-DN 310 (405)
T ss_dssp H-HHHH---T-------TTTCSSCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-SS
T ss_pred H-Hhhh---c-------ccccCCCCHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCC-Cc
Confidence 1 1110 0 0012444555555566677765532 67889999999999999999987 777665432 36
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc----cCCHHHHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV----YNTLEDYE 430 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~t~~di~ 430 (452)
+++++.++. .+.+..++.+.|.+ +||.+..+..+.+.. ....++++|++++. ..+++|++
T Consensus 311 ~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~----------~~~~~~~iRis~~~~~~~~~~~~~i~ 374 (405)
T 2vi8_A 311 HLLLVDLRP-----QQLTGKTAEKVLDE-VGITVNKNTIPYDPE----------SPFVTSGIRIGTAAVTTRGFGLEEMD 374 (405)
T ss_dssp SEEEEECGG-----GTCCHHHHHHHHHH-HTEECEEECCTTCSS----------CTTTCSEEEEECHHHHHTTCCHHHHH
T ss_pred eEEEEEccC-----CCCCHHHHHHHHHH-cCceeccCcCccccC----------CCCCCCceEEeeeeeeecCCCHHHHH
Confidence 788888752 13356788888866 599997765321000 01234689999986 35799999
Q ss_pred HHHHHHHHHHhcc
Q 012991 431 KFRDAVILLVEEG 443 (452)
Q Consensus 431 ~l~~~l~~~~~~~ 443 (452)
+++++|+++++..
T Consensus 375 ~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 375 EIAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998754
No 129
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.95 E-value=1.3e-26 Score=228.68 Aligned_cols=316 Identities=14% Similarity=0.089 Sum_probs=219.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..++.|+.+.+++.+.+... ...... + ..+..++++++++++++.+ ++++++|+||++|+.+++.++. .
T Consensus 58 ~~g~~~~~v~~a~~~~~~~~-~~~~~~--~-~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~~a~~~al~~~~------~ 126 (395)
T 1vef_A 58 NLGHGNPEVVEAVKRQAETL-MAMPQT--L-PTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKFAR------A 126 (395)
T ss_dssp TTCBTCHHHHHHHHHHHHHC-CCCCTT--S-CCHHHHHHHHHHHHTSCTT-EEEEEEESSHHHHHHHHHHHHH------H
T ss_pred cCCCCCHHHHHHHHHHHHhC-CCCccc--c-CCHHHHHHHHHHHHhcCCC-cCEEEEcCcHHHHHHHHHHHHH------H
Confidence 34557788999999887653 222111 1 3567899999999999874 6899999999999999998652 1
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhcCcE------------EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS------------VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~------------v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
+.++++|++.++.|++....+. ...|.+ +..+ +..+ +++|++++ .+++++|
T Consensus 127 ~~~~~~vi~~~~~y~~~~~~~~---~~~g~~~~~~~~~p~~~~~~~~----~~~d----~~~l~~~i------~~~~~~v 189 (395)
T 1vef_A 127 HTGRKKFVAAMRGFSGRTMGSL---SVTWEPKYREPFLPLVEPVEFI----PYND----VEALKRAV------DEETAAV 189 (395)
T ss_dssp HHSCCEEEEETTCCCCSSHHHH---HTCCCHHHHGGGCSCSSCEEEE----CTTC----HHHHHHHC------CTTEEEE
T ss_pred HhCCCeEEEEcCCcCCCchhhh---hhcCCcccccccCCCCCCeeEe----CCCc----HHHHHHHh------ccCEEEE
Confidence 2468899999998876444332 223433 3344 2222 78899988 4679999
Q ss_pred EEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCCCCcEEEE
Q 012991 195 IIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
++++++|+||.+.| +++|.++|++||+ ++|+|++|+ ++.. +++.....+|++ |++|+++++.++|+++
T Consensus 190 ~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~-~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~ 266 (395)
T 1vef_A 190 ILEPVQGEGGVRPATPEFLRAAREITQEKGA-LLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAV 266 (395)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEE
T ss_pred EEeCccCCCCccCCCHHHHHHHHHHHHHcCC-EEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEE
Confidence 99988899999888 9999999999999 899999998 3221 122233357877 5689987767789999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+++++++. +. .. ..+ ...+.+...+.++.++++.+.+ +.+.++.+++++++.+.|.++. ..
T Consensus 267 ~~~~~~~~-l~-~~---~~~--------~~~~~~~~~~~a~~~al~~~~~-----~~~~~~~~~~~~~l~~~l~~~~-~~ 327 (395)
T 1vef_A 267 MREEVARS-MP-KG---GHG--------TTFGGNPLAMAAGVAAIRYLER-----TRLWERAAELGPWFMEKLRAIP-SP 327 (395)
T ss_dssp EEHHHHHT-SC-TT---SSC--------CSSTTCHHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHTSC-CT
T ss_pred ehHHHHhh-hc-cC---CcC--------CCcCCCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhh-cC
Confidence 99887664 21 11 000 0123344444455556665543 3457778889999999998763 22
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT 425 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 425 (452)
+.......+.++++.++. +..++.+.|.++.||.+..+ .++++|++++..++
T Consensus 328 ~~~~~~~~g~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~~--------------------~~~~iRi~~~~~~~ 379 (395)
T 1vef_A 328 KIREVRGMGLMVGLELKE--------KAAPYIARLEKEHRVLALQA--------------------GPTVIRFLPPLVIE 379 (395)
T ss_dssp TEEEEEEETTEEEEEESS--------CSHHHHHHHHHHHCEECEES--------------------STTEEEECCCTTCC
T ss_pred ceEEEEEEEEEEEEEEcC--------hHHHHHHHHHHHCCeEEecC--------------------CCCEEEEeCCCCCC
Confidence 221112236788888762 24678888872359998642 13699999998899
Q ss_pred HHHHHHHHHHHHHHH
Q 012991 426 LEDYEKFRDAVILLV 440 (452)
Q Consensus 426 ~~di~~l~~~l~~~~ 440 (452)
++|+++++++|++++
T Consensus 380 ~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 380 KEDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 130
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.95 E-value=7.9e-27 Score=230.72 Aligned_cols=313 Identities=13% Similarity=0.133 Sum_probs=208.3
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++++|+++|.+ .+++++||++|+.+++.++ +++||+|+++.++|++....+..+.++
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~~---~~i~~ssGt~Ai~~al~~l--------~~~Gd~Vi~~~~~y~~~~~~~~~~l~~ 144 (415)
T 2fq6_A 76 YGRRGTLTHFSLQQAMCELEGGA---GCVLFPCGAAAVANSILAF--------IEQGDHVLMTNTAYEPSQDFCSKILSK 144 (415)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHTT--------CCTTCEEEEETTSCHHHHHHHHHTGGG
T ss_pred ccCCCCchHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHH
Confidence 44445677899999999999984 5677789999999999876 589999999999999988877655567
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH--cCCCEEEEecccc
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHA 231 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~ 231 (452)
.|++++.++. ++ ++++++++ .++|++|++++++||+|.+.|+++|+++|++ +|+ ++|+|++++
T Consensus 145 ~G~~v~~v~~----~d----~~~le~ai------~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~-~livD~a~a 209 (415)
T 2fq6_A 145 LGVTTSWFDP----LI----GADIVKHL------QPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDA-IIMIDNTWA 209 (415)
T ss_dssp GTCEEEEECT----TC----GGGGGGGC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTC-EEEEECTTT
T ss_pred cCcEEEEECC----CC----HHHHHHhh------ccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCC-EEEEECCCc
Confidence 7999999943 32 57888888 5689999999999999999999999999999 999 899999998
Q ss_pred cCCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 232 MGSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 232 ~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
.+.....+ .+++|++++|+||+++++.+ .|+++.++++++. + .... . ..|+... .. ....+
T Consensus 210 ~~~~~~p~-~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~-l-~~~~-~-----------~~G~~~~-~~-~a~~~ 272 (415)
T 2fq6_A 210 AGVLFKAL-DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQ-L-RENA-Y-----------LMGQMVD-AD-TAYIT 272 (415)
T ss_dssp TTTSSCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHH-H-HHHH-H-----------HTTCCCC-HH-HHHHH
T ss_pred ccccCCcc-ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHH-H-HHHH-H-----------hcCCCCC-HH-HHHHH
Confidence 66432222 35799999999997544432 5899888776553 1 1110 0 0121111 11 11112
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHH
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDAL 374 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 374 (452)
+..++. +....++..+++..+.+.|.+.+.+. +..|. ...+++++|.++... +..+..
T Consensus 273 ~~~l~~----l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~---~~~~~~ 345 (415)
T 2fq6_A 273 SRGLRT----LGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL---NNEELA 345 (415)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC---CHHHHH
T ss_pred HhhhhH----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC---CHHHHH
Confidence 222221 23334556677888888887764432 21111 124789999986100 013455
Q ss_pred HHHHHHhhhcceEeeecccCCCCCCC--C----CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 375 RLRGHLRVRFGVEVPIHYQAPKDDGQ--P----QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 375 ~l~~~L~~~~gI~v~~~~~~~~~~~~--~----~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
.+.+.|. .+++.+..+..+.-. .+ + .....+..+..++.||+|++..+++++|+.+.++|++
T Consensus 346 ~~l~~l~-~~~~a~s~G~~~s~~-~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 346 NYLDNFS-LFSMAYSWGGYESLI-LANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp HHHTTCS-SCEECSCCCSSSCEE-EEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred HHHHhCC-cCeEeccCCCCceeE-EecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 6666653 346666544221100 00 0 0000011234468999999999999999999999875
No 131
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.95 E-value=4.8e-28 Score=239.66 Aligned_cols=360 Identities=15% Similarity=0.054 Sum_probs=236.9
Q ss_pred HHHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHH--HhcCCchhh--hhhhh-HHHHHHHHHHHhHhCCCCCCc
Q 012991 26 EAEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLK--FLQQPDDFY--FNSLR-KGILESRAAVKDLINADDVGE 100 (452)
Q Consensus 26 ~~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~--~~~~~~~~~--~~~~~-~~~~~~~~~la~~~~~~~~~~ 100 (452)
+..+++++.. ...++.+..+.... |+.+.+++.+.+.. ...++...+ +.... ...+.+++++++++|++ ++.
T Consensus 12 ~~~~~~~~~~-~~~~i~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~-~~~ 88 (407)
T 2dkj_A 12 FELIALEEKR-QREGLELIASENFV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA-WAN 88 (407)
T ss_dssp HHHHHHHHHH-HHTSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEE
T ss_pred HHHHHHHHHH-hhcceeeccCCCCC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC-cce
Confidence 4555555543 24567776665444 88899999887643 112222211 11111 22334678999999996 333
Q ss_pred EEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc--EEEEEeCCCCCCChHHH-HHHH
Q 012991 101 ISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG--SVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 101 i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~--~v~~~~~~~~~~~~~~~-~~~l 177 (452)
+ ++++||+|+..++.++ +++|++|++++++|+++...+.. +...|. .+..++++ .+.+.+ ++++
T Consensus 89 i-~~~sGt~a~~~~~~~~--------~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~---~~~~~~d~~~l 155 (407)
T 2dkj_A 89 V-QPHSGSQANMAVYMAL--------MEPGDTLMGMDLAAGGHLTHGSR-VNFSGKLYKVVSYGVR---PDTELIDLEEV 155 (407)
T ss_dssp C-CCSSHHHHHHHHHHHH--------CCTTCEEEEECGGGTCCGGGTCT-TSHHHHHSEEEEECCC---TTTSSCCHHHH
T ss_pred E-EecchHHHHHHHHHHh--------cCCCCEEEEecccccCccchHHH-HHhcCceEEEEecCCC---cccCccCHHHH
Confidence 4 4455677999999987 47899999999999886311110 112244 44444221 112233 8999
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccc---cCccEEEEcCccc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKE---IGADFYVSNLHKW 254 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~---~~~d~~~~s~~K~ 254 (452)
++++++ .++++|++++++|+ ...|+++|.++|++||+ ++|+|++|+.|....+... ..+|++++|+||+
T Consensus 156 ~~~l~~-----~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~ 227 (407)
T 2dkj_A 156 RRLALE-----HRPKVIVAGASAYP--RFWDFKAFREIADEVGA-YLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKT 227 (407)
T ss_dssp HHHHHH-----HCCSEEEECCSSCC--SCCCHHHHHHHHHHHTC-EEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGG
T ss_pred HHHHhh-----cCCeEEEEeccccC--CCCCHHHHHHHHHHcCC-EEEEEccccccccccCccCCccccccEEEEecccc
Confidence 999852 36889999888885 78899999999999999 7999999987554322111 1379999999999
Q ss_pred CcCCCCcEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 012991 255 FFCPPSVAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 255 l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~ 333 (452)
+.|+.| |+++++ +++++. + .+... ....++++.....++.++++..... +++.++++.++++++
T Consensus 228 l~g~~~-G~~~~~~~~~~~~-l-~~~~~----------~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~~ 292 (407)
T 2dkj_A 228 LRGPRG-GLILSNDPELGKR-I-DKLIF----------PGIQGGPLEHVIAGKAVAFFEALQP--EFKEYSRLVVENAKR 292 (407)
T ss_dssp GCCCSC-EEEEESCHHHHHH-H-HHHHT----------TTTCSSCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHH
T ss_pred CCCCCc-eEEEECCHHHHHH-H-Hhhhc----------ccccCCCcHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence 888887 999998 576654 1 11100 0011344444444556677665422 678899999999999
Q ss_pred HHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 334 MARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 334 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
+.+.|.++ ++++..++ ..++++++.++. .+.+..++.+.|.+ +||.+..+..+.+.. ....+
T Consensus 293 l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~----------~~~~~ 354 (407)
T 2dkj_A 293 LAEELARR-GYRIVTGG-TDNHLFLVDLRP-----KGLTGKEAEERLDA-VGITVNKNAIPFDPK----------PPRVT 354 (407)
T ss_dssp HHHHHHHT-TCEEGGGS-CSSSEEEEECGG-----GTCCHHHHHHHHHH-TTEECEECCCTTCSS----------CTTTC
T ss_pred HHHHHHhC-CceeecCC-CCceEEEEECcc-----cCCCHHHHHHHHHH-cCceecCCcCccccc----------cccCC
Confidence 99999987 77765432 237788888862 12366788898865 599997665321100 01235
Q ss_pred ceEEeccccc----CCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVY----NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~----~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++.+ .+++|+++++++|+++++.
T Consensus 355 ~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 355 SGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp SEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 6899999764 6899999999999999876
No 132
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.95 E-value=1.8e-26 Score=227.79 Aligned_cols=311 Identities=14% Similarity=0.128 Sum_probs=206.3
Q ss_pred hhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 75 FNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 75 ~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
.+...+..+++++.+++++|.+ +.++++||++|+..++.++ +++|++|+++.++|+++...+..++...
T Consensus 60 ~r~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~a~~~~l~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~~~ 128 (398)
T 1gc0_A 60 SRISNPTLNLLEARMASLEGGE---AGLALASGMGAITSTLWTL--------LRPGDEVLLGNTLYGCTFAFLHHGIGEF 128 (398)
T ss_dssp ---CCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEESSCCSHHHHHHHHTGGGG
T ss_pred cCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hcCCCEEEEeCCCchhHHHHHHHHHHHc
Confidence 3335678899999999999984 5667777789999999987 4789999999999999888876555678
Q ss_pred CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCC
Q 012991 155 GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGS 234 (452)
Q Consensus 155 g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~ 234 (452)
|++++.++ .++ ++++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.+.
T Consensus 129 g~~~~~~~----~~d----~~~l~~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~D~~~~~~~ 193 (398)
T 1gc0_A 129 GVKLRHVD----MAD----LQALEAAM------TPATRVIYFESPANPNMHMADIAGVAKIARKHGA-TVVVDNTYCTPY 193 (398)
T ss_dssp TCEEEEEC----TTC----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTC-EEEEECTTTHHH
T ss_pred CCEEEEEC----CCC----HHHHHHhc------CCCCeEEEEECCCCCCcccccHHHHHHHHHHcCC-EEEEECCCcccc
Confidence 99999994 332 68889888 5689999999999999999999999999999999 799999998776
Q ss_pred ccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 235 IKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 235 ~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
..... ..++|+++.|+||+++++.+ .|+++++++.+.. ...+... . .+.++.+....++...+++
T Consensus 194 ~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~-~~~~~~~-~---------~~~~~~~~~~~~~~~~~l~- 260 (398)
T 1gc0_A 194 LQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDR-IRLQGLK-D---------MTGAVLSPHDAALLMRGIK- 260 (398)
T ss_dssp HCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHH-HHHTHHH-H---------HTCCCCCHHHHHHHHHHHT-
T ss_pred cCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHH-HHHHHhh-c---------cCCCCCCHHHHHHHHhccc-
Confidence 53333 35789999999998766654 4999888776542 0111110 0 0112233222222222322
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC--------------CCcCCCc-ccccceEEEEcCCccccCChhhHHHHH
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWG--------------TSLGSPP-EICAAMVMVGLPSRLRVMGEDDALRLR 377 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (452)
.+....++..++++.+.+.|.+.+. +.+..++ ...++++.|.++ + +...+.
T Consensus 261 ------~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-------~-~~~~~~ 326 (398)
T 1gc0_A 261 ------TLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK-------G-GIGAGR 326 (398)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEET-------T-HHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEEC-------C-CHHHHH
Confidence 2344455566677777777766432 2222221 134788888875 1 123455
Q ss_pred HHHhhhcceEeeecccC--------CCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 378 GHLRVRFGVEVPIHYQA--------PKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 378 ~~L~~~~gI~v~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
+.|.+ .+|.++..... .....++.... .+..+..++.+|+|++..+++++|+.+.++|+++
T Consensus 327 ~~l~~-~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 327 RFMNA-LQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHHH-CSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 55543 47765431100 00000111111 0011234689999999999999999999999875
No 133
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.95 E-value=5.5e-26 Score=222.35 Aligned_cols=310 Identities=13% Similarity=0.112 Sum_probs=213.7
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC-
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF- 127 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~- 127 (452)
++.++.+.+++.+.+... .++...+ ......++++++++++|++ +++++|+|||+|+.+++.++ +. ..
T Consensus 43 g~~~~~v~~a~~~~~~~~-~~~~~~y---~~~~~~~l~~~la~~~g~~--~~v~~~~g~t~a~~~~~~~~-~~----~~~ 111 (375)
T 2eh6_A 43 GHAYPKLTEALKEQVEKL-LHVSNLY---ENPWQEELAHKLVKHFWTE--GKVFFANSGTESVEAAIKLA-RK----YWR 111 (375)
T ss_dssp CBSCHHHHHHHHHHHHHC-SCCCTTB---CCHHHHHHHHHHHHTSSSC--EEEEEESSHHHHHHHHHHHH-HH----HHH
T ss_pred CCCCHHHHHHHHHHHHhc-cccCccc---CCHHHHHHHHHHHhhcCCC--CeEEEeCchHHHHHHHHHHH-HH----Hhc
Confidence 336778999999887653 2222222 2346788999999999983 79999999999999998753 11 12
Q ss_pred --CCC-CEEEEeCCcchhHHHHHHHHHHh----cCcE-----EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 128 --HRN-DTVLMLHCAFQAVKKSIQAYVTR----AGGS-----VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 128 --~~g-~~Vl~~~~~~~s~~~~~~~~a~~----~g~~-----v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++| ++|++++++|++....+..+... .|.. +..+ +..+ +++|++++ .+++++|+
T Consensus 112 ~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l------~~~~~~v~ 177 (375)
T 2eh6_A 112 DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYA----KLND----IDSVYKLL------DEETAGII 177 (375)
T ss_dssp HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEE----CTTC----HHHHHTTC------CTTEEEEE
T ss_pred cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeC----CCch----HHHHHHHh------cCCeEEEE
Confidence 567 99999999988765554332100 0111 4444 2222 78888888 46899999
Q ss_pred EeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc--ccccccC--ccEEEEcCcccCcCCCCcEEEEE
Q 012991 196 IDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK--IDVKEIG--ADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 196 ~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
+++++|+||.+.| +++|.++|++||+ ++|+|++|+ ++..+ ++...++ +|++++| |+++++.++|++++
T Consensus 178 ~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~ 254 (375)
T 2eh6_A 178 IEVIQGEGGVNEASEDFLSKLQEICKEKDV-LLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILA 254 (375)
T ss_dssp ECSEETTTTSEECCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEE
T ss_pred EeCccCCCCCcCCCHHHHHHHHHHHHHhCC-EEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEE
Confidence 9999999999988 9999999999999 799999998 54432 2334444 8888655 98887777999999
Q ss_pred ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012991 267 RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL 346 (452)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (452)
++++++. +. +.. .+.. .++ +...+ ..+...+... +.+.++++++++++.+.|.+++. ..
T Consensus 255 ~~~~~~~-~~-~~~---~~~~-------~~~-~~~~~---~~~~~~l~~~----~~~~~~~~~~~~~l~~~L~~~~~-~~ 313 (375)
T 2eh6_A 255 REEVAQS-FT-PGS---HGST-------FGG-NPLAC---RAGTVVVDEV----EKLLPHVREVGNYFKEKLKELGK-GK 313 (375)
T ss_dssp EHHHHTT-CC-TTS---CCCS-------STT-CHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTS-SE
T ss_pred cHHHHhh-hc-CCC---CCCC-------CCC-CHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 9887665 22 210 1100 011 22222 2233333332 15677888999999999988632 21
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
. + ..+.++++.++. +..++.+.|.+ .||.+..+ .++++|++++..+++
T Consensus 314 ~-~--~~g~~~~~~~~~--------~~~~~~~~l~~-~gi~~~~~--------------------~~~~iRi~~~~~~~~ 361 (375)
T 2eh6_A 314 V-K--GRGLMLGLELER--------ECKDYVLKALE-KGLLINCT--------------------AGKVLRFLPPLIIQK 361 (375)
T ss_dssp E-E--EETTEEEEECSS--------CCHHHHHHHHH-TTEECEEE--------------------TTTEEEECCCTTCCH
T ss_pred c-e--EEEEEEEEEEcC--------cHHHHHHHHHH-CCCEEecC--------------------CCCEEEEECCCCCCH
Confidence 1 1 236788888751 34678888876 59998642 136899999888899
Q ss_pred HHHHHHHHHHHHH
Q 012991 427 EDYEKFRDAVILL 439 (452)
Q Consensus 427 ~di~~l~~~l~~~ 439 (452)
+|+++++++|+++
T Consensus 362 ~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 362 EHIDRAISVLREI 374 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 134
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.95 E-value=3.1e-26 Score=226.43 Aligned_cols=309 Identities=15% Similarity=0.152 Sum_probs=204.5
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|+....+..+++++++++++|.+ ++++++||++|+..++.++ +++||+|+++.+.|+++...|...++.
T Consensus 56 Y~~~~~~~~~~l~~~ia~~~g~~---~~i~~~~g~~ai~~~~~~l--------~~~gd~Vl~~~~~y~~~~~~~~~~~~~ 124 (404)
T 1e5e_A 56 YTRLGNPTVSNLEGKIAFLEKTE---ACVATSSGMGAIAATVLTI--------LKAGDHLISDECLYGCTHALFEHALTK 124 (404)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEESCCCHHHHHHHHTHHHH
T ss_pred ccCCcChHHHHHHHHHHHHhCCC---cEEEeCChHHHHHHHHHHH--------hCCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 33344567789999999999984 6788888899999999977 489999999999999988876655677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH-cCCCEEEEeccccc
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD-EGVDQVFVDAAHAM 232 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~-~~~~~~ivD~a~~~ 232 (452)
.|++++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|+++|++ +|+ ++|+|++++.
T Consensus 125 ~g~~~~~v~~----~d----~~~l~~~i------~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~-~li~De~~~~ 189 (404)
T 1e5e_A 125 FGIQVDFINT----AI----PGEVKKHM------KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGV-LVIADNTFCS 189 (404)
T ss_dssp TTCEEEEECT----TS----TTHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTC-EEEEECTTTC
T ss_pred cCCEEEEECC----CC----HHHHHHhc------CCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCC-EEEEECCCch
Confidence 8999999953 32 57888888 5689999999999999999999999999999 999 8999999998
Q ss_pred CCccccccccCccEEEEcCcccCcCCCC--cEEEEEecCccc-cCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 233 GSIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRKSILS-SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 233 g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
+...... .+++|+++.|+||+++++.+ .|+++++++++. . + .+.....++ +..+.... .++
T Consensus 190 ~~~~~~~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~-l-~~~~~~~~g----------~~~~~~~~---~~~ 253 (404)
T 1e5e_A 190 PMITNPV-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQI-R-MVGIKDITG----------SVISPHDA---WLI 253 (404)
T ss_dssp TTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHH-H-HTCCCCCCC----------CCCCHHHH---HHH
T ss_pred hhhCCcc-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHH-H-HHHHHhCCC----------CCCCHHHH---HHH
Confidence 7642222 35789999999998666655 499999988766 3 1 111100001 11222122 222
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-c-------------CCCc-ccccceEEEEcCCccccCChhhHH
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-L-------------GSPP-EICAAMVMVGLPSRLRVMGEDDAL 374 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~-------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 374 (452)
+..+. ..+...++..++...+.+.|.+.+.+. + ..++ ...++++.|.++ + ...
T Consensus 254 ~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~-------~-~~~ 321 (404)
T 1e5e_A 254 TRGLS----TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK-------S-GFE 321 (404)
T ss_dssp HHHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET-------T-HHH
T ss_pred HHhHh----HHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeC-------C-CHH
Confidence 22222 233345555667777777777653221 1 1110 123778888775 1 123
Q ss_pred HHHHHHhhhcceEeeecccCCCC-C--CCCCCCCCC--------CCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 375 RLRGHLRVRFGVEVPIHYQAPKD-D--GQPQAGARD--------KDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 375 ~l~~~L~~~~gI~v~~~~~~~~~-~--~~~~~~~~~--------~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.+.|. +.||.++.. .+++. . .+|...... ..+..++++|+|++. +|++++++.|+++++.
T Consensus 322 ~~~~~l~-~~~i~~~~~-s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 322 GAKKLLD-NLKLITLAV-SLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDA 394 (404)
T ss_dssp HHHHHHH-TCSSSEESS-CCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCceecc-CCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHH
Confidence 4555554 458854321 11000 0 011111100 002235899999985 7888888888888753
No 135
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.95 E-value=5.3e-26 Score=226.50 Aligned_cols=310 Identities=12% Similarity=0.095 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHhHhCCCC--------CCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHH
Q 012991 80 KGILESRAAVKDLINADD--------VGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYV 151 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~--------~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a 151 (452)
++.+.+.+.+++.+|.+. +++|++|+|+++|+.+++.++ +++||+|++++|.|++....+
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~---- 149 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI--------INPGDNVLLDEPAYSGTLQSL---- 149 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH--------CCTTCEEEEESSCCHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh--------CCCCCEEEEeCCCcHHHHHHH----
Confidence 344555555555568752 258999999999999999987 478999999999999865554
Q ss_pred HhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccc------cCCCceEEEEE-eccCCCCcccccHH---HHHHHHHHcCC
Q 012991 152 TRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGK------KDGKMIRLAII-DHITSMPCVVIPVR---KLVKICRDEGV 221 (452)
Q Consensus 152 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~------~~~~~~~lv~~-~~~~n~tG~~~~l~---~i~~l~~~~~~ 221 (452)
+..|.+++.+++ +.++..+++|++++++.. ...+++++|++ ++++||||.++|.+ +|+++|++||+
T Consensus 150 ~~~g~~~~~v~~----~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~ 225 (425)
T 2r2n_A 150 HPLGCNIINVAS----DESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225 (425)
T ss_dssp GGGTCEEEEECE----ETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCEEEEeCc----CCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC
Confidence 556999999854 333322889999885321 00146788866 78999999999866 88999999999
Q ss_pred CEEEEeccccc----CCcccccc---ccCccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCccccc
Q 012991 222 DQVFVDAAHAM----GSIKIDVK---EIGADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIES 292 (452)
Q Consensus 222 ~~~ivD~a~~~----g~~~~~~~---~~~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 292 (452)
++|+|++|+. |....++. ..+.++++.|++|++ + +| +|++++++++++. + ... ..
T Consensus 226 -~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~-~-~GlRiG~~~~~~~l~~~-l-~~~-----------~~ 289 (425)
T 2r2n_A 226 -LIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKII-S-SGLRIGFLTGPKPLIER-V-ILH-----------IQ 289 (425)
T ss_dssp -EEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTT-C-STTCCEEEEEEHHHHHH-H-HHH-----------HH
T ss_pred -EEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhc-c-CccceEEEecCHHHHHH-H-HHH-----------HH
Confidence 8999999873 22112222 224568889999975 5 56 7999999887764 1 111 00
Q ss_pred ccccccCccccccHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHHHHHH-cCC-CcCCCcccccceEEEEcCCccccC
Q 012991 293 AWIGTRDYSAQLVIPSAVTFVSR--FEGGIDGIMQRNHEQALKMARMLANA-WGT-SLGSPPEICAAMVMVGLPSRLRVM 368 (452)
Q Consensus 293 ~~~~~~~~~~~~~~~~al~~~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 368 (452)
....+.+...+.++..+++.+.+ +...++.++++++++++++.+.|.+. +++ .+..+.. +.++|+.++.
T Consensus 290 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~--g~~~~~~~~~----- 362 (425)
T 2r2n_A 290 VSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAA--GMFLWIKVKG----- 362 (425)
T ss_dssp TTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSB--SSEEEEEETT-----
T ss_pred HhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCc--eEEEEEEeCC-----
Confidence 01133444455555555554211 01135667788888999999999874 565 3444443 7788988862
Q ss_pred ChhhHHH-HHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 369 GEDDALR-LRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 369 ~~~~~~~-l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+..+ +.+.|.+ +||.+.++..+...+ ....+++|+|++. .+++++++++++|++++++
T Consensus 363 -~~~~~~~~~~~l~~-~gv~v~pg~~f~~~~-----------~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 363 -INDVKELIEEKAVK-MGVLMLPGNAFYVDS-----------SAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp -CSCCHHHHHTHHHH-TTEECEEGGGGSSST-----------TSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHH-CCcEEechhhhcCCC-----------CCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 233344 5677765 599998766542210 0124799999984 4899999999999998864
No 136
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.95 E-value=4.3e-27 Score=234.15 Aligned_cols=346 Identities=11% Similarity=0.078 Sum_probs=229.7
Q ss_pred CCeEEeccCCCC----CCcHHHHHHHH--HHHHHHhcCCchhhhh-hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHH
Q 012991 38 HGVARINNGSFG----SCPKSVLADQQ--KWQLKFLQQPDDFYFN-SLRKGILESRAAVKDLINADDVGEISLVDNATTA 110 (452)
Q Consensus 38 ~~~~~l~~~~~~----~~p~~v~e~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a 110 (452)
...+.|..+.+. +.|+.+.+++. +.+. .+.....| ....+..+++++++++++++ +++|++|+|++++
T Consensus 25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~----~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~a 99 (423)
T 3ez1_A 25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRM----DGLDLRNYPGGVAGLPSARALFAGYLDVK-AENVLVWNNSSLE 99 (423)
T ss_dssp TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEE----TTEETTSSCSCTTCCHHHHHHHHHHTTSC-GGGEEECSSCHHH
T ss_pred CceEecCCCCCChHhCCCcHHHHHHHhhhHHhh----cchhhhCCCCCCCChHHHHHHHHHHhCCC-hhhEEEeCCcHHH
Confidence 467899888777 35545777764 3321 22222334 44566789999999999996 7899999999999
Q ss_pred HH--HHHHHhhcccccCCCC--C---------CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHH
Q 012991 111 AA--IVLQQIGRGFTEGRFH--R---------NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEF 177 (452)
Q Consensus 111 ~~--~~~~~l~~~~~~~~~~--~---------g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l 177 (452)
+. +++.++. . + ||+|++++|+|++....+. ..|.+++.+++ +.++..+++|
T Consensus 100 l~~~~~~~~l~--------~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~----~~~g~d~~~l 163 (423)
T 3ez1_A 100 LQGLVLTFALL--------HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ----TLGFELLTVDM----QSDGPDVDAV 163 (423)
T ss_dssp HHHHHHHHHHH--------TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHH----HHTCEEEEEEE----ETTEECHHHH
T ss_pred HHHHHHHHHHh--------ccCCCccccccCCCCEEEEcCCCcHHHHHHHH----HcCCEEEeccC----CCCCCCHHHH
Confidence 97 8888763 3 5 6999999999998766654 45999999965 3333228999
Q ss_pred HHHHhccccCCCceEEEEE-eccCCCCcccccHH---HHHHHH-HHcCCCEEEEecccccCCc-------cccc------
Q 012991 178 KKGIEKGKKDGKMIRLAII-DHITSMPCVVIPVR---KLVKIC-RDEGVDQVFVDAAHAMGSI-------KIDV------ 239 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~-~~~~n~tG~~~~l~---~i~~l~-~~~~~~~~ivD~a~~~g~~-------~~~~------ 239 (452)
++++++ ++++++|++ ++++||||.++|.+ +|+++| +++|+ ++|+|++|+.... ..++
T Consensus 164 ~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 238 (423)
T 3ez1_A 164 ERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDF-TIFADDAYRVHHLVEEDRAEPVNFVVLARD 238 (423)
T ss_dssp HHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTC-EEEEECTTSSCBCCSSSCCCCCCHHHHHHH
T ss_pred HHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCC-EEEEECCcchhhcCCCCCCCCcchhhhhhc
Confidence 999953 367899875 58999999999977 778888 89999 8999999874211 1111
Q ss_pred -cccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhh
Q 012991 240 -KEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFE 317 (452)
Q Consensus 240 -~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~ 317 (452)
...+.++++.|+||++.++.++|+++.+++++.. + .... .......+...+.++..+++. ...+.
T Consensus 239 ~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~-~-~~~~-----------~~~~~~~~~~~~~a~~~~l~~~~~~~~ 305 (423)
T 3ez1_A 239 AGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRW-L-SKYL-----------GAQSIGPNKVEQARHVKFLTEYPGGLE 305 (423)
T ss_dssp HTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHH-H-HHHH-----------HHSCSCCCHHHHHHHHHHHHHSTTHHH
T ss_pred cCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHH-H-HHHH-----------hhhccCCCHHHHHHHHHHHHhccchHH
Confidence 1235678899999975555668999998877664 1 1110 000122233333333333332 11000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HcC----CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee-c
Q 012991 318 GGIDGIMQRNHEQALKMARMLAN-AWG----TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI-H 391 (452)
Q Consensus 318 ~g~~~~~~~~~~~~~~l~~~L~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~-~ 391 (452)
..++..++.++++++.+.+.|.+ ++. +.+..+.. ++++++.++. . +...+.+.|.+ +||.+.+ +
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~--g~~~~~~~~~------~-~~~~~~~~l~~-~gv~v~~~g 375 (423)
T 3ez1_A 306 GLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKG--GYFISLDTAE------P-VADRVVKLAEA-AGVSLTPAG 375 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSB--SSCEEEEESS------S-CHHHHHHHHHH-TTEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCc--cEEEEEECCC------C-cHHHHHHHHHH-CCcEEecCc
Confidence 12444555555666666666654 222 44444443 7788888862 2 56778888866 5999976 4
Q ss_pred ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 392 YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
..+.... ...++++||+++.. +++++++++++|+++++...
T Consensus 376 ~~~~~~~-----------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 376 ATYPAGQ-----------DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp TTSSTTC-----------CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCC-----------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 3332100 13467999999765 89999999999999987543
No 137
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=5.2e-26 Score=223.65 Aligned_cols=308 Identities=14% Similarity=0.144 Sum_probs=209.7
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
+...+...+++++++++++.+ +.+++ ++|++|+.+++.++ .++|++|+++.++|+++...+..+++..|
T Consensus 48 ~~~~~~~~~l~~~la~~~~~~--~~i~~-~sGt~a~~~~~~~~--------~~~g~~vl~~~~~~~~~~~~~~~~~~~~g 116 (386)
T 1cs1_A 48 RRGNPTRDVVQRALAELEGGA--GAVLT-NTGMSAIHLVTTVF--------LKPGDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHTCS--EEEEE-SSHHHHHHHHHHHH--------CCTTCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred CCCCccHHHHHHHHHHHhCCC--cEEEe-CCHHHHHHHHHHHH--------hCCCCEEEEecCCcHhHHHHHHHHHHhcC
Confidence 334567889999999999985 55555 55599999999976 47899999999999998887766667789
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc
Q 012991 156 GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI 235 (452)
Q Consensus 156 ~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~ 235 (452)
.++..++ .++ ++++++.++ +++++|++++++||+|.+.|+++|.++|+++|+ ++|+|++|+.+..
T Consensus 117 ~~~~~~~----~~d----~~~l~~~i~------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-~li~De~~~~~~~ 181 (386)
T 1cs1_A 117 YRVLFVD----QGD----EQALRAALA------EKPKLVLVESPSNPLLRVVDIAKICHLAREVGA-VSVVDNTFLSPAL 181 (386)
T ss_dssp CEEEEEC----TTC----HHHHHHHHH------TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTTCTTT
T ss_pred CEEEEeC----CCC----HHHHHHhhc------cCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCC-EEEEECCCccccc
Confidence 9999984 332 688888884 578999999999999999999999999999999 8999999988765
Q ss_pred cccccccCccEEEEcCcccCcCCCCc--EEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 236 KIDVKEIGADFYVSNLHKWFFCPPSV--AFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 236 ~~~~~~~~~d~~~~s~~K~l~g~~G~--G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
.... ..++|+++.|+||+++++.+. |++++++ ++++. + .+.. ..+.++.+....++...+++
T Consensus 182 ~~~~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~-l-~~~~-----------~~~~~~~~~~~~~~~~~~l~- 246 (386)
T 1cs1_A 182 QNPL-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTE-L-AWWA-----------NNIGVTGGAFDSYLLLRGLR- 246 (386)
T ss_dssp CCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHH-H-HHHH-----------HHHTCBCCHHHHHHHHHHHT-
T ss_pred CCcc-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHH-H-HHHH-----------HhcCCCCCHHHHHHHHhccc-
Confidence 4333 357899999999987777663 9999886 56554 1 1110 00112222222222212222
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCC-------------c-ccccceEEEEcCCccccCChhhHHHHH
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSP-------------P-EICAAMVMVGLPSRLRVMGEDDALRLR 377 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (452)
.+....++..++.+.+.+.|.+++.+. +..+ + ...++++.|.++ + ....+.
T Consensus 247 ------~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~ 312 (386)
T 1cs1_A 247 ------TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD-------G-DEQTLR 312 (386)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-------S-CHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC-------C-CHHHHH
Confidence 234445566677777777776653321 1111 0 123778888875 2 145677
Q ss_pred HHHhhhcceEeee---c------ccCCCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 378 GHLRVRFGVEVPI---H------YQAPKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 378 ~~L~~~~gI~v~~---~------~~~~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+.|.+ .||.++. + ..+.. ..+|..+. ....+..++++|+|++..+++++|+++.++|+++.
T Consensus 313 ~~l~~-~gi~~~~~~~g~~~sl~~~~~~-~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 313 RFLGG-LSLFTLAESLGGVESLISHAAT-MTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp HHHHT-CSSSEEBSCCCSSSCEEEEGGG-TTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHh-CCcceEcccCCCcceeeecccc-cccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 77765 5998863 1 11100 00111000 00001235899999999999999999999998764
No 138
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.95 E-value=7.3e-26 Score=225.19 Aligned_cols=310 Identities=13% Similarity=0.161 Sum_probs=210.0
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++++++++|.+ ..+++++|++|+.+++.++ +++||+|+++++.|++....+...+..
T Consensus 108 y~r~~~~~~~~l~~~lA~l~g~~---~~v~~~sG~~Ai~~al~~l--------~~~Gd~Vi~~~~~y~~~~~~~~~~~~~ 176 (445)
T 1qgn_A 108 YGRYGNPTTVVLEEKISALEGAE---STLLMASGMCASTVMLLAL--------VPAGGHIVTTTDCYRKTRIFIETILPK 176 (445)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH--------SCSSCEEEEETTSCHHHHHHHHHTGGG
T ss_pred ccCCCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHH--------hCCCCEEEEcCCCchhHHHHHHHHHHH
Confidence 44445678899999999999984 4455566669999999977 478999999999999877766544567
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce-EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccccc
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI-RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAM 232 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~-~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~ 232 (452)
.|++++.++ .++ +++++++++ +++ ++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.
T Consensus 177 ~G~~v~~v~----~~d----~~~l~~ai~------~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~-~livD~a~~~ 241 (445)
T 1qgn_A 177 MGITATVID----PAD----VGALELALN------QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGA-LVCIDGTFAT 241 (445)
T ss_dssp GTCEEEEEC----SSC----HHHHHHHHH------HSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTTC
T ss_pred cCCEEEEeC----CCC----HHHHHHHhc------cCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCC-EEEEECCCcc
Confidence 899999994 333 688999884 467 999999999999999999999999999999 8999999987
Q ss_pred CCccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHH
Q 012991 233 GSIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA 309 (452)
Q Consensus 233 g~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 309 (452)
+... ....+++|+++.|+||+ +|+.| .|+++.++++++. + .... ..+.++++.... ..+
T Consensus 242 ~~~~-~~~~~g~Div~~S~sK~-~gg~gd~~~G~l~~~~~l~~~-l-~~~~-----------~~~g~~~~~~~a---~~~ 303 (445)
T 1qgn_A 242 PLNQ-KALALGADLVLHSATKF-LGGHNDVLAGCISGPLKLVSE-I-RNLH-----------HILGGALNPNAA---YLI 303 (445)
T ss_dssp TTTC-CTTTTTCSEEEECTTTT-TTCSSSCCCEEEEECHHHHHH-H-HHHH-----------HHHCCCCCHHHH---HHH
T ss_pred cccC-CccccCCEEEEECCccc-ccccccceEEEEEECHHHHHH-H-HHHH-----------HHhCCCCCHHHH---HHH
Confidence 7543 22346899999999997 55565 7999998877664 1 1110 001111221111 111
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CcCCCc--------------ccccceEEEEcCCccccCChhhHH
Q 012991 310 VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT-SLGSPP--------------EICAAMVMVGLPSRLRVMGEDDAL 374 (452)
Q Consensus 310 l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 374 (452)
+..++ .+....++..++++++.+.|.+.+++ .+..|. ...+++++|.++. ...+..
T Consensus 304 ~~~l~----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~-----~~~~~~ 374 (445)
T 1qgn_A 304 IRGMK----TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG-----DLLTTA 374 (445)
T ss_dssp HHHGG----GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS-----CHHHHH
T ss_pred HHhHH----HHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC-----CHHHHH
Confidence 22222 23333455566788899999887766 443331 1257899999861 112356
Q ss_pred HHHHHHhhhcceEeeecccCCCC-------CCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 375 RLRGHLRVRFGVEVPIHYQAPKD-------DGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 375 ~l~~~L~~~~gI~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.+.+.|. .+++.+..+..+.-- ..........+.+..++.||+|++ .||++.+++.|+++++
T Consensus 375 ~~l~~l~-~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 375 KFVDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALD 443 (445)
T ss_dssp HHHHHCS-SSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred HHHHhCC-CceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 6777764 347766544332100 000000001112344689999998 4689999999998875
No 139
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.95 E-value=4e-27 Score=236.06 Aligned_cols=346 Identities=15% Similarity=0.155 Sum_probs=216.9
Q ss_pred CCeEEeccC--CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHH
Q 012991 38 HGVARINNG--SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVL 115 (452)
Q Consensus 38 ~~~~~l~~~--~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~ 115 (452)
..+++++.+ ...+.|+.+.++...........+...|........+++++++++++|.+ ++++++||++|+.+++
T Consensus 89 ~~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~---~~i~~~sGt~al~~~l 165 (464)
T 1ibj_A 89 TLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKAD---RAFCFTSGMAALSAVT 165 (464)
T ss_dssp HHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHH
T ss_pred CeEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHH
Confidence 456777764 23455555666654321000111222233334457899999999999973 7788888899988776
Q ss_pred HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 116 QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 116 ~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
. + +++||+|+++++.|+++...+..++...|.+++.++. ++ +++|++++ .+++++|+
T Consensus 166 ~-~--------~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~----~d----~~~l~~~i------~~~tk~v~ 222 (464)
T 1ibj_A 166 H-L--------IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT----TK----LDEVAAAI------GPQTKLVW 222 (464)
T ss_dssp T-T--------SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT----TS----HHHHHHHC------CSSEEEEE
T ss_pred H-H--------hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC----CC----HHHHHHHh------ccCceEEE
Confidence 4 3 5899999999999999877765556778999999943 32 68899988 57899999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCCCc--EEEEEec-Cccc
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPPSV--AFLYCRK-SILS 272 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~G~--G~l~~~~-~~~~ 272 (452)
+++++||+|.++|+++|+++|++||+ ++|+|++|+.|...... .+++|+++.|+||+++|+.|+ |++++++ ++++
T Consensus 223 l~~p~NptG~v~~l~~i~~la~~~gi-~livDea~~~g~~~~~~-~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~ 300 (464)
T 1ibj_A 223 LESPTNPRQQISDIRKISEMAHAQGA-LVLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAK 300 (464)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHTTTC-EEEEECTTTCTTTCCGG-GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHH
T ss_pred EeCCCCCCCEeecHHHHHHHHHHcCC-EEEEECCCcccccCChh-hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHH
Confidence 99999999999999999999999999 89999999887642122 257899999999998887775 9999986 5554
Q ss_pred cCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH-----------
Q 012991 273 SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA----------- 341 (452)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----------- 341 (452)
. + .... ...| +..+.... .+++..+. ......++..+....+.+.|.+.
T Consensus 301 ~-l-~~~~-~~~g----------~~~~~~~~---~a~~~al~----~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L 360 (464)
T 1ibj_A 301 E-V-YFLQ-NSEG----------SGLAPFDC---WLCLRGIK----TMALRIEKQQENARKIAMYLSSHPRVKKVYYAGL 360 (464)
T ss_dssp H-H-HHHH-HHTT----------CBCCHHHH---HHHHHHHT----THHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTS
T ss_pred H-H-HHHH-HhcC----------CCCCHHHH---HHHHhchh----hHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCC
Confidence 3 1 1110 0001 11121121 22222222 11111222223333344444432
Q ss_pred ---cCCCcCCCcc-cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeeccc----C-CCCCCCCCCC--CCCCCC
Q 012991 342 ---WGTSLGSPPE-ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ----A-PKDDGQPQAG--ARDKDG 410 (452)
Q Consensus 342 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~----~-~~~~~~~~~~--~~~~~~ 410 (452)
+++++..++. ..+++++|.++ .......+.+.|.. .||.++.+.. + +..-.++... .....+
T Consensus 361 ~~~p~~~~~~~~~~g~g~~~~~~l~------~~~~~~~~~~~L~~-~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g 433 (464)
T 1ibj_A 361 PDHPGHHLHFSQAKGAGSVFSFITG------SVALSKHLVETTKY-FSIAVSFGSVKSLISMPCFMSHASIPAEVREARG 433 (464)
T ss_dssp TTSTTHHHHTTTCSCCCSEEEEECS------CHHHHHHHHHHCSS-SEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSS
T ss_pred CCCcchHHHhccCCCCceEEEEEEC------CHHHHHHHHHhcCc-ceEeecCCCCceeeecccccccccCCHHHHHhcC
Confidence 2333333322 24678998874 12234568888754 5888865531 0 0000000000 111113
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+|++. +|++++++.|+++++.
T Consensus 434 ~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 434 LTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp CCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred CCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 346799999985 8899999999998864
No 140
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.95 E-value=1.1e-25 Score=221.53 Aligned_cols=309 Identities=17% Similarity=0.136 Sum_probs=212.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..++++++++++++.+ ++++++||++|+..++.++ +++||+|+++.++|++....+..+...
T Consensus 60 y~r~~~~~~~~l~~~la~~~g~~---~~~~~~sGt~A~~~al~~~--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~ 128 (392)
T 3qhx_A 60 YARTGNPTRTALEAALAAVEDAA---FGRAFSSGMAAADCALRAM--------LRPGDHVVIPDDAYGGTFRLIDKVFTG 128 (392)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEEETTCCHHHHHHHHHTGGG
T ss_pred ccCCCChHHHHHHHHHHHHhCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEeCCCcchHHHHHHHHHHh
Confidence 34445677899999999999984 7899999999999999977 488999999999999988777655577
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|.+++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.+
T Consensus 129 ~g~~~~~v~~----~d----~~~l~~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~-~li~D~~~~~~ 193 (392)
T 3qhx_A 129 WNVEYTPVAL----AD----LDAVRAAI------RPTTRLIWVETPTNPLLSIADIAGIAQLGADSSA-KVLVDNTFASP 193 (392)
T ss_dssp GTCEEEEECT----TC----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTC-EEEEECTTTCT
T ss_pred cCcEEEEeCC----CC----HHHHHHhh------CCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 33 78899998 5789999999999999999999999999999999 89999999876
Q ss_pred CccccccccCccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
.. .+...+++|+++.|++|+++++.+ .|+++.++ ++... + ... ...+ ....+. .....++
T Consensus 194 ~~-~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~-l-~~~-~~~~----------g~~~~~---~~~~~~~ 256 (392)
T 3qhx_A 194 AL-QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQS-F-AFL-QNGA----------GAVPGP---FDAYLTM 256 (392)
T ss_dssp TT-CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHH-H-HHH-HHHH----------CCCCCH---HHHHHHH
T ss_pred cc-CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHH-H-HHH-HHhc----------CCCCCH---HHHHHHH
Confidence 43 233355799999999998544332 68888874 44443 1 110 0000 011111 1122233
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhHHH
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDALR 375 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (452)
..+. .+....++..++++++.+.|.+.+.+. +..|. ...+++++|.++. +......
T Consensus 257 ~~l~----~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~-----~~~~~~~ 327 (392)
T 3qhx_A 257 RGLK----TLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA-----GRTAAEQ 327 (392)
T ss_dssp HHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-----CHHHHHH
T ss_pred hhhh----HHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC-----cHHHHHH
Confidence 3333 344456667788888888898776542 32221 1237789999862 1356778
Q ss_pred HHHHHhhhcceEeeecccCCC-----CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHH
Q 012991 376 LRGHLRVRFGVEVPIHYQAPK-----DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 376 l~~~L~~~~gI~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
+.+.|.. +++.+..+..+.- ...+.. ...+..+..++.||+|++..+++++|+.+.++|
T Consensus 328 ~~~~l~~-~~~~~s~G~~~sl~~~~~~~~~~~-~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 328 LCAKTNI-FILAESLGSVESLIEHPSAMTHAS-TAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp HHHHCSS-SEECSCCCCSSCEEECGGGTSCGG-GBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHhCCC-ceECCCCCCCCceeeCcccccccc-cCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 8888854 5777654332100 000000 000022345789999999887777788777765
No 141
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.95 E-value=2.1e-26 Score=230.85 Aligned_cols=353 Identities=16% Similarity=0.109 Sum_probs=221.2
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCchh-hh-h-hhhHHHHHHHHHHHhHhCCCCCC---cEEEecChhHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDDF-YF-N-SLRKGILESRAAVKDLINADDVG---EISLVDNATTA 110 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~~-~~-~-~~~~~~~~~~~~la~~~~~~~~~---~i~~t~g~t~a 110 (452)
..+.|- ++..+.++.|++++...+.... ++|+.. +. . ...++.+.+++++++++|++ .+ ..++++|||+|
T Consensus 55 ~~i~li-as~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~-~~~~~~~v~~~sGt~A 132 (490)
T 2a7v_A 55 RGLELI-ASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD-PAQWGVNVQPYSGSPA 132 (490)
T ss_dssp HSEECC-TTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCC-TTTEEEECCCSSHHHH
T ss_pred cCceEE-CCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCC-cccCceEEeCCchHHH
Confidence 344444 3666788889999988765433 334332 11 1 12345557889999999996 33 24667799999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHH----HHHhcCcEEEEEeCCCCCC-ChHHH-HHHHHHHHhcc
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQA----YVTRAGGSVVEVQLPFPLA-SEEEI-INEFKKGIEKG 184 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~----~a~~~g~~v~~~~~~~~~~-~~~~~-~~~l~~~i~~~ 184 (452)
+..++.++ +++||+|++++++|.++...... .+...|..+..+++ +.+ +.+.+ ++++++.++.
T Consensus 133 n~~al~al--------~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~--~vd~~~~~iD~d~le~~l~~- 201 (490)
T 2a7v_A 133 NLAVYTAL--------LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY--KLNPKTGLIDYNQLALTARL- 201 (490)
T ss_dssp HHHHHHHH--------CCSCEECCC-------------------------------C--CBCTTTCSBCHHHHHHHHHH-
T ss_pred HHHHHHHH--------cCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEec--ccccccCCcCHHHHHHHHhh-
Confidence 99999987 58999999999988764321110 01223544444433 223 23445 8999999853
Q ss_pred ccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCC
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
.++++|+++.++| |...|+++|.++|++||+ ++++|++|+.|.. +..+. ++|++++|+||++.||.
T Consensus 202 ----~~~klIi~~~s~~--~~~~dl~~i~~ia~~~g~-~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~ 272 (490)
T 2a7v_A 202 ----FRPRLIIAGTSAY--ARLIDYARMREVCDEVKA-HLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGAR 272 (490)
T ss_dssp ----HCCSEEEECCSSC--CSCCCHHHHHHHHHHTTC-EEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCS
T ss_pred ----cCCcEEEEcCCCC--CCcccHHHHHHHHHHcCC-EEEEccccccccccCCcCCCCCC--CCCEEEECCcccCcccc
Confidence 3678888877666 457899999999999999 8999999976543 22222 68999999999988998
Q ss_pred CcEEEEEecCcccc----------CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSS----------DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 260 G~G~l~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
| |+++++++++.. .+........+.+ ..++++...+.++..|+..+... +++...++..+
T Consensus 273 G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g-------~qggp~~~~iaAla~Al~~~~~~--~~~~~~~~~~~ 342 (490)
T 2a7v_A 273 S-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPS-------LQGGPHNHAIAAVAVALKQACTP--MFREYSLQVLK 342 (490)
T ss_dssp C-EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTT-------TCCSCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHH
T ss_pred c-hheeeccchhcccccccchhhHHHHHHHHHHhccc-------CCCCchHHHHHHHHHHHHHHhhh--hHHHHHHHHHH
Confidence 7 999998864210 0000000000000 12456666666676677665421 45778889999
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+++++.+.|.+. |+++..+. ...+++++.+.. .+.+..++.+.|.+ .||.+.....+...+
T Consensus 343 na~~L~~~L~~~-G~~v~~~~-t~t~lv~vdl~~-----~g~~~~~~~~~L~~-~GI~v~~~~~p~d~~----------- 403 (490)
T 2a7v_A 343 NARAMADALLER-GYSLVSGG-TDNHLVLVDLRP-----KGLDGARAERVLEL-VSITANKNTCPGDRS----------- 403 (490)
T ss_dssp HHHHHHHHHHHT-TCEEGGGS-CSSSEEEEECTT-----TTCCHHHHHHHHHH-TTEECEEECCTTCCC-----------
T ss_pred HHHHHHHHHHHc-CcEEecCC-CCCeEEEEEeCC-----CCCCHHHHHHHHHh-CCeEEecCccCCCCC-----------
Confidence 999999999986 88775422 125678887742 24567788888865 599997654332211
Q ss_pred CCccceEEecccc----cCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQV----YNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~----~~t~~di~~l~~~l~~~~~~ 442 (452)
...++.||+++.. ..+++|++++++.|.+++..
T Consensus 404 p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 404 AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 2345789997743 34789999999999999864
No 142
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.95 E-value=2.4e-26 Score=228.47 Aligned_cols=337 Identities=12% Similarity=0.028 Sum_probs=220.2
Q ss_pred CCCeEEeccCCC------CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC-CCCCC---cEEEecC
Q 012991 37 QHGVARINNGSF------GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN-ADDVG---EISLVDN 106 (452)
Q Consensus 37 ~~~~~~l~~~~~------~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~---~i~~t~g 106 (452)
+..++.|..+.+ .+.|+.+.+++.+..... ...|....+..++++.+++++. ...++ ++++|+|
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g 110 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE------HVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAG 110 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH------HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc------cCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCc
Confidence 457899988853 356777888876643311 1123333345667777777652 11135 9999999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
|++|+..++.++ +++||+|+++.|.|++....+ ...|.+++.+++.. +++.+ ++.|++++++..
T Consensus 111 ~~~al~~~~~~l--------~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~---~~~~~d~~~l~~~l~~~~ 175 (418)
T 3rq1_A 111 GTGGIHHLIHNY--------TEPGDEVLTADWYWGAYRVIC----SDTGRTLVTYSLFD---EHNNFNHEAFQNRVNELA 175 (418)
T ss_dssp HHHHHHHHHHHH--------SCTTCEEEEESSCCTHHHHHH----HHTTCEEEEECSBC---TTSSBCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh--------cCCCCEEEECCCCchhHHHHH----HHcCCEEEEEeeeC---CCCCcCHHHHHHHHHHhh
Confidence 999999999987 589999999999999876554 55699999996521 12233 788888885210
Q ss_pred cCCCceE-EEEEecc-CCCCcccccHHHH---HHHHH------HcCCCEEEEecccccCCcc------c--cccccCcc-
Q 012991 186 KDGKMIR-LAIIDHI-TSMPCVVIPVRKL---VKICR------DEGVDQVFVDAAHAMGSIK------I--DVKEIGAD- 245 (452)
Q Consensus 186 ~~~~~~~-lv~~~~~-~n~tG~~~~l~~i---~~l~~------~~~~~~~ivD~a~~~g~~~------~--~~~~~~~d- 245 (452)
.++++ +++++++ +||||.++|.+++ +++|+ +||+ ++|+|+++...... + .......+
T Consensus 176 --~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
T 3rq1_A 176 --AKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNV-IIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEI 252 (418)
T ss_dssp --HHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEE-EEEEECTTGGGSSCHHHHHGGGGGGTTCCTTE
T ss_pred --ccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCe-EEEEecccccccCChHHHHHHHHHHHhcCCCc
Confidence 01454 8899999 9999999986655 55566 8999 79999998532211 0 11112233
Q ss_pred --EEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH---HH
Q 012991 246 --FYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV---SR 315 (452)
Q Consensus 246 --~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~ 315 (452)
+++.|+||. +|++| +|++++ ++++++. + ...... .........+...+.++..+++.. ..
T Consensus 253 ~~i~~~S~sK~-~~~~G~r~G~~~~~~~~~~~~~~-~-~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 322 (418)
T 3rq1_A 253 LTCVCYSLSKG-FTMYGQRVGAMIGISDDEEIADE-F-FEVNKS-------TSRATWSNICRPAMRTMANIVADPAKFKE 322 (418)
T ss_dssp EEEEEEESTTT-TTCCSSCCEEEEEEESSHHHHHH-H-HHHHHH-------HHHHHTSSCCHHHHHHHHHHHTCHHHHHH
T ss_pred eEEEEEeCCCC-CcCcCCcceEEEEEeCCHHHHHH-H-HHHHHH-------HHhhccCCCchHHHHHHHHHhCCHHHHHH
Confidence 677899996 56555 788888 6666664 1 111000 000000123333333333333211 11
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCC
Q 012991 316 FEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAP 395 (452)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~ 395 (452)
+....+.++++++++++++.+.|.++ ++++..+.. +.++++.++ +..++.+.|.+ +||.+.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~---------~~~~~~~~l~~-~gi~v~~g---- 385 (418)
T 3rq1_A 323 YEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPYRG--GFFITIPTD---------SANAICEELKK-EHIYVIAL---- 385 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCS--SSEEEEECT---------THHHHHHHHHH-TTEECEEC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCc--eEEEEcCCC---------CHHHHHHHHHh-CCEEEecC----
Confidence 11124566778888999999999988 887766544 556666553 56788888865 59998642
Q ss_pred CCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 396 KDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++|+|++ ..+++++++++++|++++++
T Consensus 386 -----------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~ 414 (418)
T 3rq1_A 386 -----------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKS 414 (418)
T ss_dssp -----------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHH
T ss_pred -----------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHH
Confidence 358999987 45899999999999999875
No 143
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.94 E-value=2.3e-25 Score=219.78 Aligned_cols=319 Identities=9% Similarity=0.060 Sum_probs=215.9
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.++.++.+.+++.+.+... ...+.. + ..+..+++++.+++++|. +++++|+||++|+..++.++...... .
T Consensus 54 lg~~~~~v~~a~~~~~~~~-~~~~~~--~-~~~~~~~l~~~la~~~g~---~~v~~~~gg~~a~~~al~~~~~~~~~--~ 124 (397)
T 2ord_A 54 LGHSHPRLVEAIKDQAEKL-IHCSNL--F-WNRPQMELAELLSKNTFG---GKVFFANTGTEANEAAIKIARKYGKK--K 124 (397)
T ss_dssp TCBTCHHHHHHHHHHHHHC-SCCCTT--S-EEHHHHHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHH--H
T ss_pred cCCCCHHHHHHHHHHHHhc-ccCccc--c-CCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhc--C
Confidence 4556788999999887653 222221 1 346788999999999984 68999999999999999876310000 0
Q ss_pred CC-CCEEEEeCCcchhHHHHHHHHHHhcCcE------------EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 128 HR-NDTVLMLHCAFQAVKKSIQAYVTRAGGS------------VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 128 ~~-g~~Vl~~~~~~~s~~~~~~~~a~~~g~~------------v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
.+ +++|++.++.|++....+ +...|.+ +..++ .++ +++|++++ .+++++|
T Consensus 125 ~~~~~~vi~~~~~yh~~~~~~---~~~~g~~~~~~~~~p~~~~~~~~~----~~d----~~~l~~~l------~~~~~~v 187 (397)
T 2ord_A 125 SEKKYRILSAHNSFHGRTLGS---LTATGQPKYQKPFEPLVPGFEYFE----FNN----VEDLRRKM------SEDVCAV 187 (397)
T ss_dssp CTTCCEEEEEBTCCCCSSHHH---HHHSBCHHHHGGGCSCCTTEEEEC----TTC----HHHHHHHC------CTTEEEE
T ss_pred CCCCceEEEEcCCcCCCchhh---hhccCChhhccccCCCCCCeeEec----CCC----HHHHHHHh------hcCeEEE
Confidence 14 478999888886644422 1223443 66663 332 78899888 5689999
Q ss_pred EEeccCCCCcc-c---ccHHHHHHHHHHcCCCEEEEecccc-cCCc--ccccccc--CccEEEEcCcccCcCCCCcEEEE
Q 012991 195 IIDHITSMPCV-V---IPVRKLVKICRDEGVDQVFVDAAHA-MGSI--KIDVKEI--GADFYVSNLHKWFFCPPSVAFLY 265 (452)
Q Consensus 195 ~~~~~~n~tG~-~---~~l~~i~~l~~~~~~~~~ivD~a~~-~g~~--~~~~~~~--~~d~~~~s~~K~l~g~~G~G~l~ 265 (452)
++++++||||. + .++++|+++|++||+ ++|+|++++ ++.. +.....+ .+|+++ ++|+++++.++|+++
T Consensus 188 ~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~d~~s--~sK~~~~G~r~G~~~ 264 (397)
T 2ord_A 188 FLEPIQGESGIVPATKEFLEEARKLCDEYDA-LLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT--TAKGLGGGVPIGAVI 264 (397)
T ss_dssp EECSEECTTTCEECCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEE
T ss_pred EEecccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEecccCCccCccchhhhhhCCCCCeee--eccccCCCcCeEEEE
Confidence 99999999999 4 457899999999999 899999997 2211 1222222 378774 479877555689999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GT 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~ 344 (452)
++++++ . +.... .+ ...+.+...+.++.++++.+. . +.++++++++++++.+.|.++. ++
T Consensus 265 ~~~~~~-~-l~~~~----~~--------~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~l~~~L~~~~~~~ 325 (397)
T 2ord_A 265 VNERAN-V-LEPGD----HG--------TTFGGNPLACRAGVTVIKELT----K-EGFLEEVEEKGNYLMKKLQEMKEEY 325 (397)
T ss_dssp ECSTTC-C-CCTTS----SC--------CSSTTCHHHHHHHHHHHHHHT----S-TTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EchHhc-c-cCCCC----cC--------CCCCCCHHHHHHHHHHHHHHH----h-CCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 988876 5 32110 00 011233334444444555433 1 4577888899999999998763 33
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+.......+.++++.++ ...+..++.+.|.+ .||.+..+ .++++|++++..+
T Consensus 326 ~~~~~~~~~g~~~~~~~~------~~~~~~~l~~~l~~-~gi~v~~~--------------------~~~~iRis~~~~~ 378 (397)
T 2ord_A 326 DVVADVRGMGLMIGIQFR------EEVSNREVATKCFE-NKLLVVPA--------------------GNNTIRFLPPLTV 378 (397)
T ss_dssp TTEEEEEEETTEEEEEEC------TTSCHHHHHHHHHH-TTEECEEE--------------------TTTEEEECCCTTC
T ss_pred CceEEEEEEeEEEEEEEC------ChHHHHHHHHHHHH-CCCEEccC--------------------CCCEEEEECCcCC
Confidence 322111223678888876 23356789999977 59998643 1368999998888
Q ss_pred CHHHHHHHHHHHHHHHh
Q 012991 425 TLEDYEKFRDAVILLVE 441 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~ 441 (452)
+++|+++++++|+++++
T Consensus 379 ~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 379 EYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 144
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.94 E-value=1.2e-26 Score=231.25 Aligned_cols=347 Identities=12% Similarity=0.047 Sum_probs=226.5
Q ss_pred CCCeEEeccCCCCCC----cHHHHHHH--HHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHH
Q 012991 37 QHGVARINNGSFGSC----PKSVLADQ--QKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTA 110 (452)
Q Consensus 37 ~~~~~~l~~~~~~~~----p~~v~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a 110 (452)
...++.|..|.+... +..+.+++ .+.+. ..+.....|....+..++|++++++++++ +++|++|+|++++
T Consensus 32 ~~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~a 107 (427)
T 3ppl_A 32 KNLKLDLTRGKPSSEQLDFADELLALPGKGDFKA---ADGTDVRNYGGLDGIVDIRQIWADLLGVP-VEQVLAGDASSLN 107 (427)
T ss_dssp TCCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBC---TTSCBTTSSCCSSCCHHHHHHHHHHHTSC-GGGEEECSSCHHH
T ss_pred CCceEecCCCCCChHHCCCcHHHHHHhhhHHHhh---ccchhhcCCCCCCCcHHHHHHHHHHhCCC-cceEEEeCCcHHH
Confidence 345788887765522 11233333 22211 11112233444566789999999999996 7899999999999
Q ss_pred H--HHHHHHhhcccccCCCCC----------CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHH
Q 012991 111 A--AIVLQQIGRGFTEGRFHR----------NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEF 177 (452)
Q Consensus 111 ~--~~~~~~l~~~~~~~~~~~----------g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l 177 (452)
+ .+++.++.. ..+ ||+|++++|+|.+....+ +..|.+++.+++ +.++ + +++|
T Consensus 108 l~~~~~~~~l~~------~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~----~~~g~~~~~v~~----~~~g-~d~~~l 172 (427)
T 3ppl_A 108 IMFDVISWSYIF------GNNDSVQPWSKEETVKWICPVPGYDRHFSIT----ERFGFEMISVPM----NEDG-PDMDAV 172 (427)
T ss_dssp HHHHHHHHHHHH------CCTTCSSCGGGSSCCEEEEEESCCHHHHHHH----HHTTCEEEEEEE----ETTE-ECHHHH
T ss_pred HHHHHHHHHHhc------cCCcccccccCCCCCEEEEcCCCcHHHHHHH----HHcCCEEEEeCC----CCCC-CCHHHH
Confidence 9 578777631 014 899999999999876655 446999999965 3333 4 8999
Q ss_pred HHHHhccccCCCceEEEEEe-ccCCCCcccccHH---HHHHHH-HHcCCCEEEEecccccCCc------ccccc------
Q 012991 178 KKGIEKGKKDGKMIRLAIID-HITSMPCVVIPVR---KLVKIC-RDEGVDQVFVDAAHAMGSI------KIDVK------ 240 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~-~~~n~tG~~~~l~---~i~~l~-~~~~~~~~ivD~a~~~g~~------~~~~~------ 240 (452)
+++++ .+++++|+++ +++||||.++|.+ +|+++| +++|+ ++|+|++++.... +.++.
T Consensus 173 ~~~l~-----~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~-~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 246 (427)
T 3ppl_A 173 EELVK-----NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDF-RVVWDNAYAVHTLTDEFPEVIDIVGLGEAA 246 (427)
T ss_dssp HHHTT-----STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTC-EEEEECTTTTCBSSSCCCCCCCHHHHHHHT
T ss_pred HHHHh-----cCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCC-EEEEECCCcccccCCCCCCccchhhhhhcc
Confidence 99984 3688998865 8899999999977 788888 99999 7999999875221 11211
Q ss_pred -ccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcC
Q 012991 241 -EIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGG 319 (452)
Q Consensus 241 -~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g 319 (452)
..+.++++.|+||++.++.++|+++.+++++.. + ... ........+...+.++..+++....+...
T Consensus 247 ~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~-~-~~~-----------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 313 (427)
T 3ppl_A 247 GNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKW-Y-TGH-----------AGIRGIGPNKVNQLAHARYFGDAEGVRAV 313 (427)
T ss_dssp TCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHH-H-HHH-----------HHHHCSCCCHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCcEEEEechhhccCcCccEEEEEcCHHHHHH-H-HHH-----------hhcccCCCCHHHHHHHHHHHhChhhHHHH
Confidence 235678999999974444558999888777664 1 111 00001122333333333333321100012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-c---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee-cccC
Q 012991 320 IDGIMQRNHEQALKMARMLANA-W---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI-HYQA 394 (452)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~L~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~-~~~~ 394 (452)
++..++.++++++.+.+.|.+. + ++.+..|.. +.++++.++. . +..++.+.|.+ +||.+.+ +..+
T Consensus 314 ~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~--g~~~~~~~~~------~-~~~~~~~~l~~-~gv~v~~~g~~~ 383 (427)
T 3ppl_A 314 MRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAG--GYFISLDVVP------G-TASRVAELAKE-AGIALTGAGSSY 383 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSB--SSCEEEECST------T-CHHHHHHHHHH-TTEECCCTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCc--cEEEEEECCc------c-hHHHHHHHHHH-CCCEEecCcCcC
Confidence 4556666677777777777552 2 355555544 7889998872 2 56788888866 5999976 3222
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.... ....+++|+|++.. ++++|++++++|++++++.
T Consensus 384 ~~~~-----------~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 384 PLRQ-----------DPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp GGGC-----------CTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-----------CCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 1100 12467999999754 8999999999999998753
No 145
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.94 E-value=2.3e-25 Score=221.77 Aligned_cols=339 Identities=15% Similarity=0.123 Sum_probs=219.7
Q ss_pred CcHHHHHHHHHHHHHHhcCCchhhhhhh-hHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCC
Q 012991 51 CPKSVLADQQKWQLKFLQQPDDFYFNSL-RKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR 129 (452)
Q Consensus 51 ~p~~v~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~ 129 (452)
.|+.+.+++.+.+... . +.. .+...++++.++++++. +++++|+|||+|+.+++.++ .+
T Consensus 30 ~p~~~~~a~~~~~~~~------~--y~~~~~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~l~~l---------~~ 89 (424)
T 2po3_A 30 DRARLYERLDRALDSQ------W--LSNGGPLVREFEERVAGLAGV---RHAVATCNATAGLQLLAHAA---------GL 89 (424)
T ss_dssp CHHHHHHHHHHHHHHT------C--CSSSCHHHHHHHHHHHHHHTS---SEEEEESCHHHHHHHHHHHH---------TC
T ss_pred ChHHHHHHHHHHHhcC------C--cccCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc---------CC
Confidence 3677889888876531 1 222 46789999999999998 48999999999999999987 36
Q ss_pred CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc
Q 012991 130 NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP 208 (452)
Q Consensus 130 g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~ 208 (452)
||+|++++++|+++..++ ...|.+++.++++. +.+.+ +++|++.+ .+++++|++++ ++|...+
T Consensus 90 gd~Vlv~~~~~~~~~~~~----~~~G~~~~~v~~~~---~~~~~d~~~l~~~i------~~~~~~v~~~~---~tG~~~~ 153 (424)
T 2po3_A 90 TGEVIMPSMTFAATPHAL----RWIGLTPVFADIDP---DTGNLDPDQVAAAV------TPRTSAVVGVH---LWGRPCA 153 (424)
T ss_dssp CSEEEEESSSCTHHHHHH----HHTTCEEEEECBCT---TTSSBCHHHHGGGC------CTTEEEEEEEC---GGGCCCC
T ss_pred CCEEEECCCccHHHHHHH----HHcCCEEEEEecCC---CcCCcCHHHHHHhh------CcCCcEEEEEC---CCCCcCC
Confidence 799999999999987654 44699999995421 12334 88898888 56889998864 7899999
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCCcccccccc--CccEEEEcCc--ccCcCCCCcEEEEEe-cCccccCCCCCceecc
Q 012991 209 VRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEI--GADFYVSNLH--KWFFCPPSVAFLYCR-KSILSSDMHHPVVSHE 283 (452)
Q Consensus 209 l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~--~~d~~~~s~~--K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~ 283 (452)
+++|.++|+++|+ ++|+|++|+.|.. .+.... ..|+++.|+| |++.++ ..|+++.+ +++++. + .....
T Consensus 154 l~~i~~la~~~~~-~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~~-~~G~~v~~~~~l~~~-l-~~~~~-- 226 (424)
T 2po3_A 154 ADQLRKVADEHGL-RLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVNAF-EGGAVVTDDADLAAR-I-RALHN-- 226 (424)
T ss_dssp HHHHHHHHHHTTC-EEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHH-H-HHHHB--
T ss_pred HHHHHHHHHHcCC-EEEEECccccCCe-ECCeecccccCEEEEeCCCCCCccCC-CCeEEEeCCHHHHHH-H-HHHHh--
Confidence 9999999999999 7999999997654 221111 1588888887 976553 36888887 565543 1 11110
Q ss_pred CCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-ccc--cceEEEE
Q 012991 284 FGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-EIC--AAMVMVG 360 (452)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~--~~~~~~~ 360 (452)
.+..........+.+.....++...++.... +++.+.++.+++++++.+.|.+++++.+..++ ... ..++.+.
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~ 302 (424)
T 2po3_A 227 FGFDLPGGSPAGGTNAKMSEAAAAMGLTSLD----AFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVE 302 (424)
T ss_dssp TTTTCTTCCTTCCCBCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEE
T ss_pred cCccccccccccCcCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEE
Confidence 1110000000112221112222233333322 46677888888888998888877677766532 211 2445566
Q ss_pred cCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC-CCCc-------cceEEecccccCCHHHHHHH
Q 012991 361 LPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK-DGII-------TGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~iRis~~~~~t~~di~~l 432 (452)
+++.. .+.+..++.+.|.+ .||.+...+.+.... ....... .... ...+|++++.++|++|++++
T Consensus 303 ~~~~~---~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~---~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~ 375 (424)
T 2po3_A 303 IDEAT---TGIHRDLVMEVLKA-EGVHTRAYFSPGCHE---LEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRV 375 (424)
T ss_dssp ECHHH---HSSCHHHHHHHHHH-TTEECBCTTCSCGGG---STTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHH
T ss_pred ECCcc---chhhHHHHHHHHHH-CCCceecccCCcccc---chhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHH
Confidence 64100 02457788898866 599997533211000 0000000 0001 12388888889999999999
Q ss_pred HHHHHHHHhcc
Q 012991 433 RDAVILLVEEG 443 (452)
Q Consensus 433 ~~~l~~~~~~~ 443 (452)
+++|+++++..
T Consensus 376 ~~~L~~~~~~~ 386 (424)
T 2po3_A 376 ADLLRLCATRG 386 (424)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999988653
No 146
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.94 E-value=9.7e-26 Score=228.64 Aligned_cols=339 Identities=12% Similarity=0.061 Sum_probs=212.7
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-----CCC-CCCcEEEecChhHHHHHHHHHhhcccccC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-----NAD-DVGEISLVDNATTAAAIVLQQIGRGFTEG 125 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~-~~~~i~~t~g~t~a~~~~~~~l~~~~~~~ 125 (452)
|..+.+++.+.+.... +.....|....+..++|+.+++++ |.+ ++++|++|+|+++++.+++.++
T Consensus 103 P~~~~~~~~~~l~~~~--~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l------- 173 (498)
T 3ihj_A 103 PEDAKKRARRILQACG--GNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL------- 173 (498)
T ss_dssp CHHHHHHHHHHHHHC------------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHHHHHhcc--CCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH-------
Confidence 5555566555554321 111122333445566666666665 343 3689999999999999999987
Q ss_pred CCCCC----CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC
Q 012991 126 RFHRN----DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 126 ~~~~g----~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
.++| ++|+++.|.|++....+. ..|.+++.++... +....+ +++|++.+++... ..++++|++++++
T Consensus 174 -~~~gd~~~d~Vlv~~p~y~~~~~~~~----~~g~~~v~~~~~~--~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~ 245 (498)
T 3ihj_A 174 -VSGGGKSRTGVMIPIPQYPLYSAVIS----ELDAIQVNYYLDE--ENCWALNVNELRRAVQEAKD-HCDPKVLCIINPG 245 (498)
T ss_dssp -CCCCGGGSEEEEEEESCCTHHHHHHH----HTTCEEEEEECBG--GGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSC
T ss_pred -cCCCCCCCCEEEEeCCCchhHHHHHH----HcCCEEEEeeccc--cccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCC
Confidence 3555 499999999998766654 4599999996521 111133 8999999864321 1268999999999
Q ss_pred CCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc-----cccccc----------Cc-cEEEEcCcccCcCCCC-
Q 012991 201 SMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK-----IDVKEI----------GA-DFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 201 n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~-----~~~~~~----------~~-d~~~~s~~K~l~g~~G- 260 (452)
||||.+++ +++|+++|++||+ ++|+|++++..... .++... .. .+++.|+||.+.|.+|
T Consensus 246 NPTG~v~s~~~l~~i~~la~~~~~-~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~ 324 (498)
T 3ihj_A 246 NPTGQVQSRKCIEDVIHFAWEEKL-FLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGY 324 (498)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSS
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCc-EEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCccc
Confidence 99999987 4568999999999 79999998764331 111111 11 2567799998645444
Q ss_pred -cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH-----------HHHHhhcCHHHHHH
Q 012991 261 -VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT-----------FVSRFEGGIDGIMQ 325 (452)
Q Consensus 261 -~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-----------~~~~~~~g~~~~~~ 325 (452)
+|++++ ++++++. + .... . ....++...+.++..+++ +.. ..+.+++
T Consensus 325 R~G~~~~~~~~~~l~~~-l-~~~~-----------~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~----~~~~~~~ 386 (498)
T 3ihj_A 325 RGGYMEVINLHPEIKGQ-L-VKLL-----------S-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSR----EKESVLG 386 (498)
T ss_dssp CCEEEEEESCCHHHHHH-H-HHHH-----------H-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHH----HHHHHHH
T ss_pred ceEEEEEecCCHHHHHH-H-HHHH-----------h-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHH----HHHHHHH
Confidence 688873 5555553 1 1110 0 012333344444443331 222 2456778
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEc--CCccc---cCChhhHHHH-HHHHhhhcceEeeecccCCCCCC
Q 012991 326 RNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGL--PSRLR---VMGEDDALRL-RGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~l-~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
+++++++++.+.|.+++++++..++. +.++|+.+ |.... ...+.+.+++ +..+.+++||.+.++..+...
T Consensus 387 ~l~~~~~~l~~~L~~~~g~~~~~p~g--g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~-- 462 (498)
T 3ihj_A 387 NLAKKAKLTEDLFNQVPGIHCNPLQG--AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR-- 462 (498)
T ss_dssp HHHHHHHHHHHHHHTSTTEECCCCCB--SSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC--
T ss_pred HHHHHHHHHHHHHhcCCCcEecCCCe--EEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC--
Confidence 88899999999999887888776654 45555443 21000 0002233443 344334469999887766321
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
...+++|+++. .+.++++.++++|++++++.
T Consensus 463 -----------~~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 463 -----------EGTYHFRMTIL--PPVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp -----------TTCCBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHH
Confidence 23568999996 58999999999999988653
No 147
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.94 E-value=1.7e-25 Score=220.25 Aligned_cols=320 Identities=13% Similarity=0.154 Sum_probs=217.7
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc-cc-cCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG-FT-EGR 126 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~-~~-~~~ 126 (452)
+..++.+.+++.+.+.... .... ....+..+++++++++++|. +++++++|||+|+..++.++... +. ...
T Consensus 51 G~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~~~l~~~la~~~g~---~~v~~~~~gt~a~~~al~~~~~~~~~~~~~ 123 (392)
T 3ruy_A 51 GHRHPKIINALIDQANRVT-LTSR---AFHSDQLGPWYEKVAKLTNK---EMVLPMNTGAEAVETAIKTARRWAYDVKKV 123 (392)
T ss_dssp CBTCHHHHHHHHHHHTTCS-CCCT---TSEETTHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCHHHHHHHHHHHHhcc-cccc---ccCCHHHHHHHHHHHHhcCC---CEEEEeCcHHHHHHHHHHHHHHhhhhccCC
Confidence 3457779999988765421 1111 12345678999999999984 69999999999999999866321 00 000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhcC---------cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRAG---------GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g---------~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
-..+++|++..++|++.......+....+ ..+..+ +.++ +++|++++ .+++++|+++
T Consensus 124 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l------~~~~~~v~~~ 189 (392)
T 3ruy_A 124 EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI----PYGD----LEALKAAI------TPNTAAFILE 189 (392)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEE----CTTC----HHHHHHHC------CTTEEEEEEC
T ss_pred CCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeee----Cccc----HHHHHHHh------ccCeEEEEEe
Confidence 12367999999999876555433211000 124444 3222 78899998 5789999999
Q ss_pred ccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC-CCcEEEEEe
Q 012991 198 HITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP-PSVAFLYCR 267 (452)
Q Consensus 198 ~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~~~ 267 (452)
+++||||.+.| +++|.++|++||+ ++|+|++|+ ++.. ..+.....+|++++| |++.|+ ..+|+++++
T Consensus 190 ~~~nptG~~~~~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~ 266 (392)
T 3ruy_A 190 PIQGEAGINIPPAGFLKEALEVCKKENV-LFVADEIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAAN 266 (392)
T ss_dssp SSBSTTTSBCCCTTHHHHHHHHHHTTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEEC
T ss_pred CccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeechhCCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEEC
Confidence 99999999998 9999999999999 899999995 3321 223333457888665 987663 337999998
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + .+.. .+ ...+.+...+.++.++++.+.. +.++++++++++++.+.|.++ +....
T Consensus 267 ~~~~~~-~-~~~~---~~--------~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~~-~~~~~ 327 (392)
T 3ruy_A 267 RDILGV-F-EPGS---HG--------STFGGNPLACAVSIAALEVLEE-----EKLTERSLQLGEKLVGQLKEI-DNPMI 327 (392)
T ss_dssp HHHHTT-C-CTTS---SC--------CSSTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHTTC-CCTTE
T ss_pred HHHHhh-h-ccCC---cC--------CCCCCCHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 877765 2 2210 00 0123344444455555555432 567788889999999999876 32222
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
......++++++.++ . +..++.+.|.+ +||.+.++ .++++|++++..+|++
T Consensus 328 ~~~~~~g~~~~~~~~-------~-~~~~l~~~l~~-~gi~v~~~--------------------~~~~iRi~~~~~~~~~ 378 (392)
T 3ruy_A 328 TEVRGKGLFIGIELN-------E-PARPYCEQLKA-AGLLCKET--------------------HENVIRIAPPLVISEE 378 (392)
T ss_dssp EEEEEETTEEEEEES-------S-CSHHHHHHHHT-TTEECCCB--------------------TTTEEEECCCTTCCHH
T ss_pred eEEEeeeeEEEEEEc-------c-hHHHHHHHHHH-CCcEEecC--------------------CCCEEEEECCCCCCHH
Confidence 112223677777775 2 55788899976 59998632 2479999999889999
Q ss_pred HHHHHHHHHHHHH
Q 012991 428 DYEKFRDAVILLV 440 (452)
Q Consensus 428 di~~l~~~l~~~~ 440 (452)
|+++++++|++++
T Consensus 379 ~i~~~~~~l~~~l 391 (392)
T 3ruy_A 379 DLEWAFQKIKAVL 391 (392)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
No 148
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.94 E-value=4.7e-26 Score=219.57 Aligned_cols=306 Identities=14% Similarity=0.122 Sum_probs=217.6
Q ss_pred CCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhC---CCCCCcEEEecChhHHHHH
Q 012991 38 HGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLIN---ADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 38 ~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~i~~t~g~t~a~~~ 113 (452)
+.+++|+.+..+ +.|+.+.+++.+.+... ... .+.. ....++++.++++++ ++ +++|++|+|+++++.+
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~--~y~~-~~~~~lr~~la~~~~~~~~~-~~~v~~~~G~~~al~~ 91 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSD---ALR--IYYD-SPDEELIEKILSYLDTDFLS-KNNVSVGNGADEIIYV 91 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHTCCGG---GGG--SCCC-SSCHHHHHHHHHHHTCSSCC-GGGEEEESSHHHHHHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHHhhhh---hhh--cCCC-CchHHHHHHHHHHcCCCCCC-HHHEEEcCChHHHHHH
Confidence 457899988775 56788999988765211 111 1211 237889999999999 75 6899999999999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceE
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIR 192 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~ 192 (452)
++.+ + ||+|+++ |+|++....+ +..|.+++.++. ++++.+ ++++ ++++
T Consensus 92 ~~~~---------~--gd~Vl~~-p~y~~~~~~~----~~~g~~~~~v~~----~~~~~~d~~~l-----------~~~~ 140 (335)
T 1uu1_A 92 MMLM---------F--DRSVFFP-PTYSCYRIFA----KAVGAKFLEVPL----TKDLRIPEVNV-----------GEGD 140 (335)
T ss_dssp HHHH---------S--SEEEECS-SSCHHHHHHH----HHHTCEEEECCC----CTTSCCCCCCC-----------CTTE
T ss_pred HHHH---------h--CCcEEEC-CCcHHHHHHH----HHcCCeEEEecc----CCCCCCCHHHc-----------CCCC
Confidence 9884 3 7899999 9999876554 445999988854 222111 2222 3679
Q ss_pred EEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-c-cc-ccccCccEEEEcCcccCcCCCC--cEEEEEe
Q 012991 193 LAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-K-ID-VKEIGADFYVSNLHKWFFCPPS--VAFLYCR 267 (452)
Q Consensus 193 lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~-~~-~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~ 267 (452)
+|++++|+||||.++|.+++.++++..| + +|+|++|+.... + .+ +...+.++++.|++|+ +|++| +|+++++
T Consensus 141 ~v~l~~p~nptG~~~~~~~l~~l~~~~~-~-li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~g~~G~r~G~~~~~ 217 (335)
T 1uu1_A 141 VVFIPNPNNPTGHVFEREEIERILKTGA-F-VALDEAYYEFHGESYVDFLKKYENLAVIRTFSKA-FSLAAQRVGYVVAS 217 (335)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHTTC-E-EEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTT-TTCGGGCCEEEEEC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCC-E-EEEECcchhhcchhHHHHhhhCCCEEEEecchhh-cCCcccCeEEEEeC
Confidence 9999999999999999999999999887 4 999999874211 1 22 2234567899999997 56556 7999998
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+++++. + .... . ..+.+...+.++.++++... ..+..+++++++++++.+.|.+. ++.+.
T Consensus 218 ~~~~~~-l-~~~~-----------~--~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 277 (335)
T 1uu1_A 218 EKFIDA-Y-NRVR-----------L--PFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREM-GYRIT 277 (335)
T ss_dssp HHHHHH-H-HHHS-----------C--TTCSCHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHH-TCCBC
T ss_pred HHHHHH-H-HHhc-----------C--CCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHC-CcEEc
Confidence 877664 1 1110 0 02334444444444544321 46778888999999999999987 77654
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
++. ++++++.++ ..+..++.+.|.++ ||.+.. .++++|+|++ +.+
T Consensus 278 -~~~--~~~~~~~~~-------~~~~~~~~~~l~~~-gi~v~~---------------------~~~~iRis~~---~~~ 322 (335)
T 1uu1_A 278 -DSR--GNFVFVFME-------KEEKERLLEHLRTK-NVAVRS---------------------FREGVRITIG---KRE 322 (335)
T ss_dssp -CCC--SSEEEEECC-------THHHHHHHHHHHHH-TEEEEE---------------------ETTEEEEECC---CHH
T ss_pred -CCC--CeEEEEECC-------CCCHHHHHHHHHHC-CEEEEE---------------------CCCeEEEEeC---CHH
Confidence 333 668888886 24667888988764 999864 1368999996 578
Q ss_pred HHHHHHHHHHHH
Q 012991 428 DYEKFRDAVILL 439 (452)
Q Consensus 428 di~~l~~~l~~~ 439 (452)
|+++++++|+++
T Consensus 323 ~i~~~~~~l~~~ 334 (335)
T 1uu1_A 323 ENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhh
Confidence 899999998753
No 149
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=3.4e-25 Score=220.15 Aligned_cols=352 Identities=12% Similarity=0.060 Sum_probs=225.2
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDF-YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.+.|+.+.+++.+.+... ....+ ...+..++.+++++.+++++|++ ++++++|||+|+.+++.++ .+
T Consensus 12 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~g~~~l~~~l~~~la~~~g~~---~~i~~~~gt~al~~~~~~~-------~~ 79 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQSN--RWAISGYWTGEESMERKFAKAFADFNGVP---YCVPTTSGSTALMLALEAL-------GI 79 (418)
T ss_dssp SCCCHHHHHHHHHHHHHT--CCSTTSBCCSSCCHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHT-------TC
T ss_pred CCCCHHHHHHHHHHHhcC--CccccCcccCCHHHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHc-------CC
Confidence 455788999998887652 11111 11233456889999999999995 5788888999999999976 24
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
++||+|+++.++|+++..++. ..|.+++.++++. +++.+ ++++++.+ .+++++|+++ |++|..
T Consensus 80 ~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~~~~~---~~~~~d~~~l~~~i------~~~~~~v~~~---~~~G~~ 143 (418)
T 2c81_A 80 GEGDEVIVPSLTWIATATAVL----NVNALPVFVDVEA---DTYCIDPQLIKSAI------TDKTKAIIPV---HLFGSM 143 (418)
T ss_dssp CTTCEEEEESSSCTHHHHHHH----HTTCEEEEECBCT---TTCSBCHHHHGGGC------CTTEEEECCB---CCTTCC
T ss_pred CCcCEEEECCCccHhHHHHHH----HcCCEEEEEecCC---CCCCcCHHHHHHhh------CCCCeEEEEe---CCcCCc
Confidence 789999999999999877654 4699999995421 12334 88999888 5688998875 478999
Q ss_pred ccHHHHHHHHHHcCCCEEEEecccccCCc-cc-cccccCccEEEEcC--cccCcCCCCcEEEEEe-cCccccCCCCCcee
Q 012991 207 IPVRKLVKICRDEGVDQVFVDAAHAMGSI-KI-DVKEIGADFYVSNL--HKWFFCPPSVAFLYCR-KSILSSDMHHPVVS 281 (452)
Q Consensus 207 ~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~-~~~~~~~d~~~~s~--~K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~ 281 (452)
.++++|.++|+++|+ ++|+|++|+.+.. .. ....+ .|+++.|+ ||+++++ ..|+++.+ +++++. + .+...
T Consensus 144 ~~~~~i~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~-~-~~~~~ 218 (418)
T 2c81_A 144 ANMDEINEIAQEHNL-FVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFEL-I-QQLRA 218 (418)
T ss_dssp CCHHHHHHHHHHTTC-EEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHH-H-HHHHB
T ss_pred ccHHHHHHHHHHCCC-EEEEECcccccCccCCEecccc-cceEEEeccCCcccCCC-CeEEEEECCHHHHHH-H-HHHHH
Confidence 999999999999999 8999999998863 11 11111 24555555 9986543 46888875 455443 1 11100
Q ss_pred ccCCCCc---cc---cccc--ccccCccc----cccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 012991 282 HEFGNGL---PI---ESAW--IGTRDYSA----QLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSP 349 (452)
Q Consensus 282 ~~~~~~~---~~---~~~~--~~~~~~~~----~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 349 (452)
.+... +. ..+. .+++.... +..+.+++..... ++++.+.++.+++++++.+.|.+++++++..+
T Consensus 219 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 294 (418)
T 2c81_A 219 --DSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL--QELDDKNAIREKNAMFLNDALSKIDGIKVMKR 294 (418)
T ss_dssp --TTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTEEECCC
T ss_pred --hCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCcccCCC
Confidence 00000 00 0000 01111111 1112333332221 25778888888999999999988777777643
Q ss_pred ccc--c-c-ceEEEEcCCccccCChhhHHHHHHHHhhhcceE---eeecccCCCCCCCCCCCCC---CC-----------
Q 012991 350 PEI--C-A-AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVE---VPIHYQAPKDDGQPQAGAR---DK----------- 408 (452)
Q Consensus 350 ~~~--~-~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~---v~~~~~~~~~~~~~~~~~~---~~----------- 408 (452)
+.. . . .++.+.+++.. ..+.+..++.+.|.+++||. ++.++.+.+. ...+.. ..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~ 369 (418)
T 2c81_A 295 PPQVSRQTYYGYVFRFDPVK--FGGLNADQFCEILREKLNMGTFYLHPPYLPVHK---NPLFCPWTKNRYLKSVRKTEAY 369 (418)
T ss_dssp CTTEEECCCSEEEEEECGGG--TTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGG---CTTCCGGGCTTSCHHHHCCHHH
T ss_pred CCCCcccccEEEEEEEcccc--ccccCHHHHHHHHHHcCCCCccccccccccccc---Cchhcccccccccccccccccc
Confidence 321 1 2 34446665100 01346788999997655999 8765532110 000000 00
Q ss_pred ---CCC------ccceEEecccccC-CHHHHHHHHHHHHHHHhc
Q 012991 409 ---DGI------ITGYARISHQVYN-TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ---~~~------~~~~iRis~~~~~-t~~di~~l~~~l~~~~~~ 442 (452)
... ..+.||++++.++ |.+||++++++|++++++
T Consensus 370 ~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 370 WRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp HHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred cccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 000 1368999999999 999999999999999875
No 150
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.94 E-value=2.8e-25 Score=219.40 Aligned_cols=334 Identities=15% Similarity=0.091 Sum_probs=216.1
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND 131 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~ 131 (452)
++.+.+++.+.+... .+.......++++.++++++.+ ++++++|||+|+..++.++ .+++|+
T Consensus 43 ~~~v~~a~~~~~~~~--------~y~~~~~~~~l~~~la~~~~~~---~~v~~~~Gt~a~~~~l~~~-------~~~~gd 104 (399)
T 2oga_A 43 RAETDAAIARVLDSG--------RYLLGPELEGFEAEFAAYCETD---HAVGVNSGMDALQLALRGL-------GIGPGD 104 (399)
T ss_dssp HHHHHHHHHHHHHHT--------CCSSSHHHHHHHHHHHHHTTSS---EEEEESCHHHHHHHHHHHT-------TCCTTC
T ss_pred CHHHHHHHHHHHhcC--------CCCCchhHHHHHHHHHHHHCCC---eEEEecCHHHHHHHHHHHh-------CCCCcC
Confidence 366888888876531 1222356789999999999984 6788999999999999876 247899
Q ss_pred EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHH
Q 012991 132 TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR 210 (452)
Q Consensus 132 ~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~ 210 (452)
+|+++.++|++....+ ...|.+++.++++. +.+.+ +++|++++ .+++++|++ +||+|.+.|++
T Consensus 105 ~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~---~~~~~d~~~l~~~i------~~~~~~v~~---~n~tG~~~~l~ 168 (399)
T 2oga_A 105 EVIVPSHTYIASWLAV----SATGATPVPVEPHE---DHPTLDPLLVEKAI------TPRTRALLP---VHLYGHPADMD 168 (399)
T ss_dssp EEEEESSSCTHHHHHH----HHTTCEEEEECBCS---SSSSBCHHHHHHHC------CTTEEEECC---BCGGGCCCCHH
T ss_pred EEEECCCccHHHHHHH----HHCCCEEEEEecCC---CCCCcCHHHHHHhc------CCCCeEEEE---eCCcCCccCHH
Confidence 9999999999976654 44699999996521 12233 89999998 567888874 57899999999
Q ss_pred HHHHHHHHcCCCEEEEecccccCCccccccccC--ccEEEEcC--cccCcCCCC-cEEEEEe-cCccccCCCCCceeccC
Q 012991 211 KLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG--ADFYVSNL--HKWFFCPPS-VAFLYCR-KSILSSDMHHPVVSHEF 284 (452)
Q Consensus 211 ~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~--~d~~~~s~--~K~l~g~~G-~G~l~~~-~~~~~~~l~~~~~~~~~ 284 (452)
+|.++|+++|+ ++|+|++++.|... +...++ .|++++|+ +|++ |++| .|+++.+ +++++. + .+... .
T Consensus 169 ~i~~l~~~~~~-~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~-~~~G~~g~~~~~~~~~~~~-l-~~~~~--~ 241 (399)
T 2oga_A 169 ALRELADRHGL-HIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNL-GCFGDGGAVVTGDPELAER-L-RMLRN--Y 241 (399)
T ss_dssp HHHHHHHHHTC-EECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSS-CCSSCCEEEEESCHHHHHH-H-HHHHB--T
T ss_pred HHHHHHHHcCC-EEEEECcccccCcc-CCeecccccCEEEEeCCCCccC-CcCCceEEEEeCCHHHHHH-H-HHHHh--c
Confidence 99999999999 79999999987542 322233 69999998 5975 4433 5777775 565543 1 11100 1
Q ss_pred CCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccce-EEEEcCC
Q 012991 285 GNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAM-VMVGLPS 363 (452)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-~~~~~~~ 363 (452)
+..........+.+.....+++..+...+. .++.+.++.+++++++.+.|.+++++.+...+....++ +.+.++
T Consensus 242 g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~- 316 (399)
T 2oga_A 242 GSRQKYSHETKGTNSRLDEMQAAVLRIRLA----HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVR- 316 (399)
T ss_dssp TCSSTTCCCSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEE-
T ss_pred CccccccccccccCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEE-
Confidence 110000000112111111222222223333 34556777788888999999887777665333221211 123332
Q ss_pred ccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC-----C------ccceEEecccccCCHHHHHHH
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG-----I------ITGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~iRis~~~~~t~~di~~l 432 (452)
..+..++.+.|.+ .||.++.++...... .......+ . ..+++|++++.++|++|++++
T Consensus 317 ------~~~~~~l~~~L~~-~gI~v~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~ 385 (399)
T 2oga_A 317 ------TERRDELRSHLDA-RGIDTLTHYPVPVHL----SPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRV 385 (399)
T ss_dssp ------CSSHHHHHHHHHH-TTBCCBCSCSSCGGG----SHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHH
T ss_pred ------CCCHHHHHHHHHH-CCCceecCCCCcccc----chhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHH
Confidence 1256789999976 499987543210000 00000000 0 136899999999999999999
Q ss_pred HHHHHHHHhc
Q 012991 433 RDAVILLVEE 442 (452)
Q Consensus 433 ~~~l~~~~~~ 442 (452)
+++|++++++
T Consensus 386 ~~~l~~~~~~ 395 (399)
T 2oga_A 386 IDAVREWAER 395 (399)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 151
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.94 E-value=2.1e-26 Score=229.67 Aligned_cols=338 Identities=13% Similarity=0.106 Sum_probs=230.9
Q ss_pred CCeEEeccCCC-C-CCcHHH--HHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-----CCCCCCc---EEEec
Q 012991 38 HGVARINNGSF-G-SCPKSV--LADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-----NADDVGE---ISLVD 105 (452)
Q Consensus 38 ~~~~~l~~~~~-~-~~p~~v--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~~~~~---i~~t~ 105 (452)
+.++.|..+.+ . ..|+.+ .+++.+.+.. .....|....+..++++.+++++ +++ +++ |++|+
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~-~~~~~~i~~t~ 120 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTP-----DEIFPYAPPQGIEELRDLWQQKMLRDNPELS-IDNMSRPIVTN 120 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCG-----GGTSSCCCTTCCHHHHHHHHHHHHHHCTTCC-GGGBCCCEEES
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCc-----ccccccCCCCCCHHHHHHHHHHHhccCcccC-CCccceEEEcC
Confidence 56788887765 3 223334 5554433211 01122333345688899999998 775 678 99999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh-cCcEEEEEeCCCCCCChHHH-HHHHHHHHhc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR-AGGSVVEVQLPFPLASEEEI-INEFKKGIEK 183 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~ 183 (452)
|+++|+.+++.++ +++||+|++++++|++....+ .. .|.+++.++++. . ++.+ +++|++++++
T Consensus 121 g~~~al~~~~~~l--------~~~gd~Vl~~~p~y~~~~~~~----~~~~g~~~~~~~~~~--~-~~~~d~~~l~~~l~~ 185 (430)
T 2x5f_A 121 ALTHGLSLVGDLF--------VNQDDTILLPEHNWGNYKLVF----NTRNGANLQTYPIFD--K-DGHYTTDSLVEALQS 185 (430)
T ss_dssp HHHHHHHHHHHHH--------CCTTCEEEEESSCCTHHHHHH----TTTTCCEEEEECCBC--T-TSCBCSHHHHHHHHH
T ss_pred CchHHHHHHHHHH--------hCCCCEEEEcCCcCccHHHHH----HHhcCCeEEEEeccC--c-cCCcCHHHHHHHHHh
Confidence 9999999999987 478999999999999875543 45 699999986531 1 1223 7889988863
Q ss_pred cccCCCceEEEEEeccCCCCccccc---HHHHHHHHHH-----cCCCEEEEecccccCCc------cc--cccc-cCc--
Q 012991 184 GKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRD-----EGVDQVFVDAAHAMGSI------KI--DVKE-IGA-- 244 (452)
Q Consensus 184 ~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~-----~~~~~~ivD~a~~~g~~------~~--~~~~-~~~-- 244 (452)
. ..++++|++++|+||||.++| +++|+++|++ +|+ ++|+|++++.... ++ ++.. .+.
T Consensus 186 ~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (430)
T 2x5f_A 186 Y---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKV-IAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAI 261 (430)
T ss_dssp C---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEE-EEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTE
T ss_pred c---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCE-EEEEehhcccccCCcccchHHHHHHhhccCCcc
Confidence 2 247899999999999999998 7889999999 999 8999999875322 11 2222 234
Q ss_pred -cEEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH-HHHHhh
Q 012991 245 -DFYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT-FVSRFE 317 (452)
Q Consensus 245 -d~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-~~~~~~ 317 (452)
++++.|+||+ +|++| +|++++ ++++++. + ...... .......+++...+.++.++++ .. .+.
T Consensus 262 ~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~~~~-l-~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~ 330 (430)
T 2x5f_A 262 LPIRLDGATKE-FFAWGFRVGFMTFGTSDQTTKEV-L-EAKVKG-------LIRSNISSGPLPTQSAVKHVLKNNK-QFD 330 (430)
T ss_dssp EEEEEEEHHHH-TTCGGGCCEEEEEBCCCHHHHHH-H-HHHHHH-------HHHTTTSSCCHHHHHHHHHHHHSCH-HHH
T ss_pred eEEEEEecccC-CCCCCCCeEEEEEecCCHHHHHH-H-HHHHhh-------hhhcccCCCChHHHHHHHHHHccCh-HHH
Confidence 6788999997 56556 699999 7777664 1 111000 0000113445555555555555 21 110
Q ss_pred cCHHHHHHHHHHHHHHHHHHHH----HHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeeccc
Q 012991 318 GGIDGIMQRNHEQALKMARMLA----NAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ 393 (452)
Q Consensus 318 ~g~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~ 393 (452)
..++.++++++++++++.+.|. +. ++.+..+.. +.++++.++ +.+..++.+.|.+++||.+..+
T Consensus 331 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~--g~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g-- 398 (430)
T 2x5f_A 331 KEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNS--GYFMAIKVH-------DVDPEALRKHLIDKYSIGVIAL-- 398 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCB--SSEEEEEES-------SSCHHHHHHHHHHHHCEECEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCc--eEEEEeCCC-------CCCHHHHHHHHHHhCCEEEecC--
Confidence 1245578888899999999987 33 566554433 556888875 3456789999876359998643
Q ss_pred CCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 394 APKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++|+|++. ++++++++++++|++++++
T Consensus 399 ------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 399 ------------------NATDIRIAFSC-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp ------------------SSSEEEEEGGG-SCGGGHHHHHHHHHHHHHH
T ss_pred ------------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 13689999985 4899999999999998764
No 152
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.94 E-value=4.9e-25 Score=219.73 Aligned_cols=342 Identities=11% Similarity=0.066 Sum_probs=219.8
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
++.++.+.+++.+.+......+...+ ..+...+++++++++++.+ +++|+||+|||+|++.++.++. .+....-.
T Consensus 58 g~~~p~v~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~la~~~~~~-~~~v~~~~ggtea~~~ai~~~~-~~~~~~g~ 132 (429)
T 1s0a_A 58 GYNHPQLNAAMKSQIDAMSHVMFGGI---THAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMAL-QYWQAKGE 132 (429)
T ss_dssp CBSCHHHHHHHHHHHHHCSCCCCSSE---ECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHHH-HHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhccccccccc---CCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHH-HHhcccCC
Confidence 34678899999988765322111111 2344677888999999875 7899999999999999998652 11000002
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHH-------hc---CcEEEEEeCCCCC--CChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVT-------RA---GGSVVEVQLPFPL--ASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~-------~~---g~~v~~~~~~~~~--~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
++++|++.++.|++.......+.. .. ...+..++.+... +..+.. +++|++++++. .+++++|+
T Consensus 133 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi 209 (429)
T 1s0a_A 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVI 209 (429)
T ss_dssp CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEE
T ss_pred CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC---CCCEEEEE
Confidence 589999999988764433321100 00 0134555432100 011223 78888888532 25678888
Q ss_pred Eecc-CCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEEE
Q 012991 196 IDHI-TSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAFL 264 (452)
Q Consensus 196 ~~~~-~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~l 264 (452)
++.. +|++|.+.| +++|+++|++||+ ++|+|++|+ +|... .+.....+|++++ +|+++++ .++|++
T Consensus 210 ~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~-~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~--sK~l~~G~~~iG~~ 286 (429)
T 1s0a_A 210 IEPIVQGAGGMRMYHPEWLKRIRKICDREGI-LLIADEIATGFGRTGKLFACEHAEIAPDILCL--GKALTGGTMTLSAT 286 (429)
T ss_dssp ECSSEECTTTCEEBCTHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTSSSCCEEE
T ss_pred EeecccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEeehhhCCcccchHHHhhhcCCCCCEEEe--cccccCCCccceEE
Confidence 8877 899998877 9999999999999 899999997 44321 2222345787754 5987776 678999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. +.... ... .....+.+.+...+.+..++++.+.+ +.+.++++++++++.+.|.++...
T Consensus 287 ~~~~~~~~~-l~~~~-----~~~--~~~~~t~~~n~~~~~a~~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~ 353 (429)
T 1s0a_A 287 LTTREVAET-ISNGE-----AGC--FMHGPTFMGNPLACAAANASLAILES-----GDWQQQVADIEVQLREQLAPARDA 353 (429)
T ss_dssp EECHHHHHH-HHTST-----TSS--CSCCCTTTTCHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred EeCHHHHHH-hhcCC-----Ccc--cccCCCCCCCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhcC
Confidence 998877654 21100 000 00000123344455555666666553 246778888999999999875321
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.........+.++++.++ ...+..++.+.|.+ .||.+.. .++++|++++..+
T Consensus 354 ~~~~~~~~~g~~~~~~~~------~~~~~~~l~~~l~~-~Gi~v~~---------------------~~~~iRis~~~~~ 405 (429)
T 1s0a_A 354 EMVADVRVLGAIGVVETT------HPVNMAALQKFFVE-QGVWIRP---------------------FGKLIYLMPPYII 405 (429)
T ss_dssp TTEEEEEEETTEEEEEES------SCBCHHHHHHHHHH-TTEECCC---------------------BTTEEEECCCTTC
T ss_pred CCEEEEEEeeEEEEEEEC------CcccHHHHHHHHHH-CCCEEec---------------------cCCEEEEECCCCC
Confidence 111111123567888876 23456788888876 4999852 1268999999889
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
|++|+++++++|+++++.
T Consensus 406 t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 406 LPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp CHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999998754
No 153
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=1.1e-25 Score=221.58 Aligned_cols=309 Identities=17% Similarity=0.146 Sum_probs=206.3
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG 155 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g 155 (452)
....+..+++++++++++|.+ +.++++|||+|+++++. + +++||+|+++.++|++....+...++..|
T Consensus 51 ~~~~~~~~~lr~~la~~~g~~---~~i~~~sGt~a~~~al~-~--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G 118 (393)
T 1n8p_A 51 RSQNPNRENLERAVAALENAQ---YGLAFSSGSATTATILQ-S--------LPQGSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp TTCCHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHHHH-T--------SCSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred cCCChhHHHHHHHHHHHhCCC---cEEEECChHHHHHHHHH-H--------cCCCCEEEEeCCCchHHHHHHHHHHHHcC
Confidence 334567899999999999985 56666777999999998 6 47899999999999987666654456679
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc----CCCEEEEecccc
Q 012991 156 GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE----GVDQVFVDAAHA 231 (452)
Q Consensus 156 ~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~----~~~~~ivD~a~~ 231 (452)
.+++.+ +.+ . +++++++ .+++++|++++++||+|.+.|+++|.++|+++ |+ ++|+|++|+
T Consensus 119 ~~v~~v----~~~----d-~~l~~~i------~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~-~livD~a~~ 182 (393)
T 1n8p_A 119 VETSFT----NDL----L-NDLPQLI------KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDV-ILVVDNTFL 182 (393)
T ss_dssp SCCEEE----SSH----H-HHHHHHS------CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTC-EEEEECTTT
T ss_pred cEEEEe----CCC----h-HHHHHhc------ccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCC-EEEEeCCcc
Confidence 999998 432 2 6788888 56899999999999999999999999999999 99 899999998
Q ss_pred cCCccccccccCccEEEEcCcccCcCCCC--c-EEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHH
Q 012991 232 MGSIKIDVKEIGADFYVSNLHKWFFCPPS--V-AFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIP 307 (452)
Q Consensus 232 ~g~~~~~~~~~~~d~~~~s~~K~l~g~~G--~-G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (452)
.+... +...+++|+++.|+||+ +|++| + |+++++ +++++. + .... ..+.++.+.... .
T Consensus 183 ~~~~~-~~~~~~~di~~~S~sK~-~g~~G~rigG~~~~~~~~~~~~-l-~~~~-----------~~~g~~~~~~~~---~ 244 (393)
T 1n8p_A 183 SPYIS-NPLNFGADIVVHSATKY-INGHSDVVLGVLATNNKPLYER-L-QFLQ-----------NAIGAIPSPFDA---W 244 (393)
T ss_dssp HHHHC-CGGGGTCSEEEEETTTT-TTCSSCCCCEEEEESCHHHHHH-H-HHHH-----------HHHCCCCCHHHH---H
T ss_pred ccccC-CHHHcCCeEEEEECccc-ccCCCCceeEEEEeCCHHHHHH-H-HHHH-----------HhcCCCCCHHHH---H
Confidence 77653 44455799999999996 67777 6 888885 455554 1 1110 000111111111 1
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CC-cCCC-----c---------cc-c-cceEEEEcCCccccCC
Q 012991 308 SAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TS-LGSP-----P---------EI-C-AAMVMVGLPSRLRVMG 369 (452)
Q Consensus 308 ~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~-~~~~-----~---------~~-~-~~~~~~~~~~~~~~~~ 369 (452)
.++..+. ......++..+++..+.+.|.+.+. +. +..| + .. . +++++|.++. .
T Consensus 245 ~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~-----~ 315 (393)
T 1n8p_A 245 LTHRGLK----TLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG-----G 315 (393)
T ss_dssp HHHHHHT----THHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS-----C
T ss_pred HHHhccc----hHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC-----c
Confidence 1222222 2333455556677777777766533 21 1111 1 11 3 6789998862 1
Q ss_pred hhhHHHHHHHHhhhcceEeeecccCCC-----CCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 370 EDDALRLRGHLRVRFGVEVPIHYQAPK-----DDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 370 ~~~~~~l~~~L~~~~gI~v~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..+...+.+.|. .+++.+..+..+.. .-.++... ...+.+..++.+|+|++..+++++|+.+.++|+++.
T Consensus 316 ~~~~~~~l~~l~-~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 316 AEAASKFASSTR-LFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp HHHHHHHHHHCS-SSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC-cceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 235566777764 34666644322110 00011000 111223446899999999999999999999998753
No 154
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.94 E-value=3.5e-25 Score=219.66 Aligned_cols=322 Identities=15% Similarity=0.126 Sum_probs=206.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|++...+..+++++++++++|.+ ..+++++|++|+.+++.++ +++||+|+++++.|++....+...+..
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~~---~~v~~~sG~~Ai~~al~al--------~~~Gd~Vi~~~~~y~~~~~~~~~~~~~ 144 (430)
T 3ri6_A 76 YSRSSNPTVEDLEQRLKNLTGAL---GVLALGSGMAAISTAILTL--------ARAGDSVVTTDRLFGHTLSLFQKTLPS 144 (430)
T ss_dssp ----CCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHH--------CCTTCEEEEETTCCHHHHHHHHTHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHH--------hCCCCEEEEcCCCchhHHHHHHHHHHH
Confidence 44455677899999999999985 4677778899999999887 589999999999999988877655678
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|++++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.+
T Consensus 145 ~G~~~~~v~~----~d----~~~l~~ai------~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~-~livD~a~~~~ 209 (430)
T 3ri6_A 145 FGIEVRFVDV----MD----SLAVEHAC------DETTKLLFLETISNPQLQVADLEALSKVVHAKGI-PLVVDTTMTPP 209 (430)
T ss_dssp TTCEEEEECT----TC----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTC-CEEEECTTSCT
T ss_pred cCCEEEEeCC----CC----HHHHHHhh------CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 33 68899998 5789999999999999999999999999999999 79999999987
Q ss_pred CccccccccCccEEEEcCcccCcCC---CCcEEEEEecCcccc-CCCCCceeccCCCCccc------ccccccccCcccc
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCP---PSVAFLYCRKSILSS-DMHHPVVSHEFGNGLPI------ESAWIGTRDYSAQ 303 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~---~G~G~l~~~~~~~~~-~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 303 (452)
.. .+....++|+++.|++|+++|+ . .|+++.+.+.... .-..+.+...+|..... .....|... ..+
T Consensus 210 ~~-~~~~~~g~div~~S~sK~l~g~g~~~-gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~-~~~ 286 (430)
T 3ri6_A 210 YL-LEAKRLGVDIEVLSSTKFISGGGTSV-GGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSL-SPH 286 (430)
T ss_dssp TT-CCGGGGTCSEEEEECCCEEETTEEEC-CEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCC-CHH
T ss_pred cc-CChHHcCCEEEEECCcccccCCCCce-EEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCC-CHH
Confidence 75 4445568999999999986654 3 3666644331110 00000000000000000 000011111 111
Q ss_pred ccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCcc-------------cccc-eEEEEcCCccccC
Q 012991 304 LVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPPE-------------ICAA-MVMVGLPSRLRVM 368 (452)
Q Consensus 304 ~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~-------------~~~~-~~~~~~~~~~~~~ 368 (452)
....++..++ .+....++..+++.++.+.|.+.+++. +..|.- ..++ +++|.++
T Consensus 287 -~a~l~l~~l~----~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~------ 355 (430)
T 3ri6_A 287 -NAYLQSLGLE----TMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE------ 355 (430)
T ss_dssp -HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS------
T ss_pred -HHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC------
Confidence 1122223333 234445667788889999998887765 443321 1256 9999996
Q ss_pred ChhhHHHHHHHHhhhcceEeeecccCCC-----CCCCCCCC--CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 369 GEDDALRLRGHLRVRFGVEVPIHYQAPK-----DDGQPQAG--ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 369 ~~~~~~~l~~~L~~~~gI~v~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+..++.++.+.|. .+++.+..+....- .-.+.... .+.+.+..+++||+|++. |+++.+++.|++.+
T Consensus 356 ~~~~~~~~~~~l~-~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 356 SKEASYRFMDALK-LIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp SHHHHHHHHHHCS-SSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCC-cceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 3456778888874 35666543322110 00000000 011224567899999974 55666666666654
No 155
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.94 E-value=1.7e-26 Score=229.16 Aligned_cols=347 Identities=13% Similarity=0.075 Sum_probs=222.5
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDD-FYF--NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
..+.|..+ ..+.|+.|.+++.+.+.... ++++. ++. ....+..+.+++.+++++|++ +++|++++| |+|+.+
T Consensus 26 ~~i~l~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~~sG-t~a~~~ 102 (417)
T 3n0l_A 26 EGLEMIAS-ENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK-FANVQPNSG-SQANQG 102 (417)
T ss_dssp HSEECCTT-CCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSH-HHHHHH
T ss_pred cCeeeecc-cCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCC-CcceEeccH-HHHHHH
Confidence 45566533 44557789999987663221 11211 111 122345556888999999995 556766555 899999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHH-HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAY-VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~-a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
++.++ +++||+|+++.++|+++...+... ....+..+..++ .++++.+ +++|++++++ +++
T Consensus 103 ~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~d~~~l~~~i~~-----~~~ 165 (417)
T 3n0l_A 103 VYAAL--------INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYG----VELDGRIDYEKVREIAKK-----EKP 165 (417)
T ss_dssp HHHHH--------SCTTCEEEEECC----------------CCSEEEEEC----CCTTSSCCHHHHHHHHHH-----HCC
T ss_pred HHHHh--------cCCCCEEEecccccccccchhhhhhhhcceeeeEecc----CCCCCCcCHHHHHHHHHh-----cCC
Confidence 99987 589999999999998765432221 111344555553 3333444 8999999952 478
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCCCcEEEEE
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYC 266 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~ 266 (452)
++|++++++| |...|+++|.++|++||+ ++|+|++|+.|.. +..+. .+|++++|+||++.|+.| |++++
T Consensus 166 ~~v~~~~~~~--G~~~~l~~i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~ 239 (417)
T 3n0l_A 166 KLIVCGASAY--ARVIDFAKFREIADEIGA-YLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMT 239 (417)
T ss_dssp SEEEECCSSC--CSCCCHHHHHHHHHHHTC-EEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEE
T ss_pred eEEEECCccc--CccCCHHHHHHHHHHcCC-EEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEE
Confidence 8999887774 999999999999999999 8999999876554 22222 469999999999878876 99888
Q ss_pred e-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012991 267 R-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS 345 (452)
Q Consensus 267 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (452)
+ +++.+. + .... . ....++++...+.++..++..... .+++.++++..++++++.+.|.+ .++.
T Consensus 240 ~~~~~~~~-~-~~~~---~-------~~~~~~~~~~~~aa~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~-~g~~ 304 (417)
T 3n0l_A 240 NDEELAKK-I-NSAI---F-------PGIQGGPLMHVIAAKAVGFKFNLS--DEWKVYAKQVRTNAQVLANVLMD-RKFK 304 (417)
T ss_dssp SCHHHHHH-H-HHHH---T-------TTTCSSCCHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCHHHHHH-H-hhhh---C-------CcccCCcHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHh-CCce
Confidence 7 455543 1 1110 0 001134444444555555554332 15678888999999999999988 4776
Q ss_pred cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc--
Q 012991 346 LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY-- 423 (452)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-- 423 (452)
+..+. ...+++++.++. .+.+...+.+.|.+ +||.+.....+...+. ....+.+|+++...
T Consensus 305 ~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~----------~~~~~~~ri~~~~~~~ 367 (417)
T 3n0l_A 305 LVSDG-TDNHLVLMSFLD-----REFSGKDADLALGN-AGITANKNTVPGEIRS----------PFITSGLRLGTPALTA 367 (417)
T ss_dssp EGGGS-CSSSEEEEECTT-----SSSCHHHHHHHHHH-TTEECEECCCTTCCSC----------TTTCSEEEEECHHHHH
T ss_pred eccCC-CCceEEEEEccc-----CCCCHHHHHHHHHH-cCeEEeccccCCCCcc----------cCCCCeeEecCHHHhh
Confidence 55422 225677777641 24467788888865 5999975443311100 12346799998643
Q ss_pred --CCHHHHHHHHHHHHHHHhcc
Q 012991 424 --NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 424 --~t~~di~~l~~~l~~~~~~~ 443 (452)
.+++|+++++++|+++++..
T Consensus 368 ~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 368 RGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 36899999999999999764
No 156
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.94 E-value=4.6e-25 Score=217.49 Aligned_cols=344 Identities=15% Similarity=0.105 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCE
Q 012991 53 KSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDT 132 (452)
Q Consensus 53 ~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~ 132 (452)
+++.+++.+.+... +.....+...++++.++++++. +++++|+|||+|+.+++.++ .+++||+
T Consensus 12 ~~v~~a~~~~~~~~-------~~~~~g~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~l-------~~~~gd~ 74 (394)
T 1o69_A 12 GNELKYIEEVFKSN-------YIAPLGEFVNRFEQSVKDYSKS---ENALALNSATAALHLALRVA-------GVKQDDI 74 (394)
T ss_dssp CCHHHHHHHHHHHT-------TTSCTTHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-------TCCTTCE
T ss_pred HHHHHHHHHHHHcC-------CccCCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-------CCCCCCE
Confidence 44778887776531 1111124578999999999988 48999999999999999986 2578999
Q ss_pred EEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHH
Q 012991 133 VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRK 211 (452)
Q Consensus 133 Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~ 211 (452)
|+++.++|+++..++.. .|.+++.+++ ++++.+ ++++++++++. ..++++|++++ ++|...++++
T Consensus 75 Vl~~~~~~~~~~~~~~~----~g~~~~~v~~----~~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~l~~ 140 (394)
T 1o69_A 75 VLASSFTFIASVAPICY----LKAKPVFIDC----DETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAKMDE 140 (394)
T ss_dssp EEEESSSCGGGTHHHHH----TTCEEEEECB----CTTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCCHHH
T ss_pred EEECCCccHHHHHHHHH----cCCEEEEEEe----CCCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhhHHH
Confidence 99999999998777644 5999999954 333344 89999988631 12689999986 7899999999
Q ss_pred HHHHHHHcCCCEEEEecccccCCcccccc--c-cCccEEEEcCcccCcCCCCcEEEEEe-cCccccCCCCCceeccCCC-
Q 012991 212 LVKICRDEGVDQVFVDAAHAMGSIKIDVK--E-IGADFYVSNLHKWFFCPPSVAFLYCR-KSILSSDMHHPVVSHEFGN- 286 (452)
Q Consensus 212 i~~l~~~~~~~~~ivD~a~~~g~~~~~~~--~-~~~d~~~~s~~K~l~g~~G~G~l~~~-~~~~~~~l~~~~~~~~~~~- 286 (452)
|.++|+++|+ ++|+|++|+.|....+.. . .++|++++|.+|. .++.++|+++++ +++++. + ..... ++.
T Consensus 141 i~~l~~~~~~-~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~-l~~~~~G~~~~~~~~l~~~-l-~~~~~--~~~~ 214 (394)
T 1o69_A 141 IVEICKENDI-VLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKI-ITTSGGGMLIGKNKEKIEK-A-RFYST--QARE 214 (394)
T ss_dssp HHHHHHHTTC-EEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS-SCCSSCEEEEESCHHHHHH-H-HHHTB--TCCC
T ss_pred HHHHHHHcCC-EEEEECcCcccceeCCcccccccCcEEEEEeCCcc-CCCCCceEEEECCHHHHHH-H-HHHHH--hccc
Confidence 9999999999 899999999776533221 1 3578888889996 455668999996 565554 1 11100 110
Q ss_pred Ccc-cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc-ccc--eEEEEcC
Q 012991 287 GLP-IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI-CAA--MVMVGLP 362 (452)
Q Consensus 287 ~~~-~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~--~~~~~~~ 362 (452)
..+ .+....|............++..+. .++...++.+++++++.+.|.++ +++..+... ..+ ++++.++
T Consensus 215 ~~~~~~~~~~g~~~~~~~~~aa~~l~~l~----~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~ 288 (394)
T 1o69_A 215 NCLHYEHLDYGYNYRLSNVLGAIGVAQME----VLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALIN 288 (394)
T ss_dssp SSSSCCCSSCCCBCBCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEES
T ss_pred cCccccccccCcccCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEec
Confidence 000 0000001111011111112222211 35667888899999999999775 555443211 122 5677765
Q ss_pred Ccc---------------ccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC----C----CCccceEEec
Q 012991 363 SRL---------------RVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK----D----GIITGYARIS 419 (452)
Q Consensus 363 ~~~---------------~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~----~----~~~~~~iRis 419 (452)
... +...+.+..++.+.|.+ .||.++.++.+.. +...+... . ......+|+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~ 363 (394)
T 1o69_A 289 FDKNELNACQKDINISQKNITLHPKISKLIEDLKN-KQIETRPLWKAMH----TQEVFKGAKAYLNGNSELFFQKGICLP 363 (394)
T ss_dssp CCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHH-TTCCCBCCCCCGG----GCGGGTTCEEEECSHHHHHHHHEEEEC
T ss_pred chhhccccccccccccccccccccCHHHHHHHHHH-cCCcccccCCccc----cchhhhccCCCCChHHHHHhcCeEEcc
Confidence 210 00002367789999976 5999976643211 00000000 0 0001456777
Q ss_pred ccccCCHHHHHHHHHHHHHHHhccc
Q 012991 420 HQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
.+.++|++|+++++++|+++++.+.
T Consensus 364 ~~~~~t~edi~~~~~~l~~~~~~~~ 388 (394)
T 1o69_A 364 SGTAMSKDDVYEISKLILKSIKAGS 388 (394)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHC---
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccc
Confidence 7889999999999999999987664
No 157
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.94 E-value=1.4e-24 Score=213.64 Aligned_cols=304 Identities=12% Similarity=0.128 Sum_probs=204.3
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
+.....+...++++++++++|.+ +.++++||++|+..++.++ +++||+|+++++.|++....+..++..
T Consensus 53 y~~~~~~~~~~l~~~la~~~g~~---~~i~~~sG~~ai~~~~~~~--------~~~gd~vl~~~~~y~~~~~~~~~~~~~ 121 (389)
T 3acz_A 53 YSRLGNPTVEQFEEMVCSIEGAA---GSAAFGSGMGAISSSTLAF--------LQKGDHLIAGDTLYGCTVSLFTHWLPR 121 (389)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHTTT--------CCTTCEEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHhCCC---eEEEeCCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHH
Confidence 33434677899999999999984 6677788899999998865 578999999999999988888776788
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|.+++.++. .+ ++++++++ .+++++|++++++||+|.+.|+++|.++|+++|+ ++|+|++++.+
T Consensus 122 ~g~~~~~v~~----~d----~~~l~~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~-~livD~~~~~~ 186 (389)
T 3acz_A 122 FGIEVDLIDT----SD----VEKVKAAW------KPNTKMVYLESPANPTCKVSDIKGIAVVCHERGA-RLVVDATFTSP 186 (389)
T ss_dssp TTCEEEEECT----TC----HHHHHHTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTC-EEEEECTTTCT
T ss_pred cCCEEEEECC----CC----HHHHHHhc------CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 22 68888888 5689999999999999999999999999999999 89999999877
Q ss_pred Cc--cccccccCccEEEEcCcccCcCCCC--cEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 234 SI--KIDVKEIGADFYVSNLHKWFFCPPS--VAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 234 ~~--~~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
.. +++ +++|+++.|++|+++++.+ .|++++++ ++++. + .+... .+.++.+. .....
T Consensus 187 ~~~~~~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~-l-~~~~~-----------~~g~~~~~---~~~~~ 247 (389)
T 3acz_A 187 CFLKPLE---LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIAT-I-KFYRK-----------DAGSLMAP---MDAFL 247 (389)
T ss_dssp TTCCGGG---TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHH-H-HHHHH-----------HHCCCCCH---HHHHH
T ss_pred cccCccc---cCCeEEEECChhhccCCCCceeEEEEECcHHHHHH-H-HHHHH-----------hcCCCCCH---HHHHH
Confidence 53 333 5789999999999777766 49999988 76654 1 11100 01111111 11222
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCC-------------c-ccccceEEEEcCCccccCChhhH
Q 012991 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSP-------------P-EICAAMVMVGLPSRLRVMGEDDA 373 (452)
Q Consensus 309 al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~ 373 (452)
++..+. .+....++..+++..+.+.|.+.+.+. +..+ . ...++++.|.++ + .
T Consensus 248 ~~~~l~----~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~-------~--~ 314 (389)
T 3acz_A 248 CARGMK----TLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-------S--F 314 (389)
T ss_dssp HHHHHT----THHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-------S--H
T ss_pred HHcCcc----HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC-------C--H
Confidence 233322 334445556677778888887753221 1111 0 123678888875 2 4
Q ss_pred HHHHHHHhhhcceEeee---c------ccCCCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHH
Q 012991 374 LRLRGHLRVRFGVEVPI---H------YQAPKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVI 437 (452)
Q Consensus 374 ~~l~~~L~~~~gI~v~~---~------~~~~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~ 437 (452)
.++.+.|.+ .||.++. + ..+.... +..... ....+..++.+|+|++..++++.++.+.++|+
T Consensus 315 ~~~~~~l~~-~~i~~~~~s~G~~~sl~~~~~~~~-~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~ 387 (389)
T 3acz_A 315 EAAKKLMEH-LKVCTLAVSLGCVDTLIEHPASMT-HAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE 387 (389)
T ss_dssp HHHHHHHTT-CSSSEEBSCCCCSSCEEECTTTTT-TSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-CCCcEECcCCCCcccEeeCCcccc-cccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHh
Confidence 456666654 5887654 2 2221100 000000 00112336899999998766665666665553
No 158
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.94 E-value=4.8e-25 Score=218.08 Aligned_cols=310 Identities=12% Similarity=0.117 Sum_probs=210.7
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHh
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
|.+...+..+++++++++++|. +.+++++||++|+.+++.++ +++||+|+++++.|++....+..++..
T Consensus 75 y~r~~~p~~~~l~~~la~~~g~---~~~~~~~sG~~Ai~~al~~l--------~~~Gd~Vi~~~~~y~~~~~~~~~~~~~ 143 (414)
T 3ndn_A 75 YSRYGNPTVSVFEERLRLIEGA---PAAFATASGMAAVFTSLGAL--------LGAGDRLVAARSLFGSCFVVCSEILPR 143 (414)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTT--------CCTTCEEEEESCCCHHHHHHHHTHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHH--------hCCCCEEEEcCCccchHHHHHHHHHHH
Confidence 4444567889999999999997 47899999999999998876 589999999999999988887766677
Q ss_pred cCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccC
Q 012991 154 AGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMG 233 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g 233 (452)
.|.+++.++. ++ +++|++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++|+|++++.|
T Consensus 144 ~g~~~~~v~~----~d----~~~l~~ai------~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~-~livDe~~~~~ 208 (414)
T 3ndn_A 144 WGVQTVFVDG----DD----LSQWERAL------SVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGA-KVVLDNVFATP 208 (414)
T ss_dssp TTCEEEEECT----TC----HHHHHHHT------SSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTTHH
T ss_pred cCcEEEEeCC----CC----HHHHHHhc------CCCCeEEEEECCCCCCCccccHHHHHHHHHHcCC-EEEEECCCccc
Confidence 8999999943 33 68899998 5689999999999999999999999999999999 89999999866
Q ss_pred CccccccccCccEEEEcCcccCcCCCC---cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHH
Q 012991 234 SIKIDVKEIGADFYVSNLHKWFFCPPS---VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAV 310 (452)
Q Consensus 234 ~~~~~~~~~~~d~~~~s~~K~l~g~~G---~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 310 (452)
...... ..++|+++.|++|++ ++.| .|+++.+++.+...+ .... ..+ |... .......++
T Consensus 209 ~~~~~~-~~g~div~~S~sK~l-~~~G~~~~G~vv~~~~~~~~~l-~~~~-~~~-----------g~~~--~~~~a~~~~ 271 (414)
T 3ndn_A 209 LLQQGF-PLGVDVVVYSGTKHI-DGQGRVLGGAILGDREYIDGPV-QKLM-RHT-----------GPAM--SAFNAWVLL 271 (414)
T ss_dssp HHCCCG-GGTCSEEEEETTTTT-TCSSCCCCEEEEECHHHHTTHH-HHHH-HHH-----------CCCC--CHHHHHHHH
T ss_pred ccCCch-hcCCCeEeccCCccc-cCCCCceEEEEEECHHHHHHHH-HHHH-HHc-----------CCCC--CHHHHHHHH
Confidence 432222 457899999999985 5544 689988877665201 1110 000 1111 111122222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCC----hh
Q 012991 311 TFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMG----ED 371 (452)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~----~~ 371 (452)
..+. .+....++..++++++.+.|.+.+++. +..|. ...+++++|.++. . ..
T Consensus 272 ~~l~----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~-----~~~~~~~ 342 (414)
T 3ndn_A 272 KGLE----TLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDC-----PEDVAKQ 342 (414)
T ss_dssp HHGG----GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECS-----CGGGHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcC-----CccccHH
Confidence 2222 345556677888889999998876653 32221 1247899999862 1 23
Q ss_pred hHHHHHHHHhhhcceEeeecccCCCC-CCCCCCCC------CCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 372 DALRLRGHLRVRFGVEVPIHYQAPKD-DGQPQAGA------RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 372 ~~~~l~~~L~~~~gI~v~~~~~~~~~-~~~~~~~~------~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
...++.+.|.. +++.+..+..+.-- ..++.... ..+.+..+++||+|++. |+++.+++.|++.+
T Consensus 343 ~~~~~~~~l~~-~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 343 RAFEVLDKMRL-IDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp HHHHHHHHCSS-SEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-ceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 56778888854 57766443221000 00000000 00124567899999985 44555666665544
No 159
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.94 E-value=9.4e-26 Score=223.77 Aligned_cols=335 Identities=10% Similarity=0.050 Sum_probs=211.7
Q ss_pred CCCeEEeccCCC------CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCCCCC---cEEEecC
Q 012991 37 QHGVARINNGSF------GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NADDVG---EISLVDN 106 (452)
Q Consensus 37 ~~~~~~l~~~~~------~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~---~i~~t~g 106 (452)
++.++.|..+.+ .+.|+.+.+++.+..... ...|....+..++++.+++++ +...++ ++++|+|
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g 109 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSH------IASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPG 109 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHH------HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCccc------ccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCc
Confidence 457888888864 256777888877643211 112323334566777777755 321124 9999999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
|++|+..++.++ +++||+|+++.|.|.+....+. ..|.+++.+++. ++++.+ +++|++.+++..
T Consensus 110 ~~~al~~~~~~~--------~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~---~~~~~~d~~~l~~~l~~~~ 174 (413)
T 3t18_A 110 GTGAIRSAIFSY--------LDEGDPLICHDYYWAPYRKICE----EFGRNFKTFEFF---TDDFAFNIDVYKEAIDEGI 174 (413)
T ss_dssp HHHHHHHHHHHH--------CCSSCEEEEESSCCTHHHHHHH----HHTCEEEEECCB---CTTSSBCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHh--------cCCCCEEEECCCCcccHHHHHH----HhCCeEEEeecc---CCCCCcCHHHHHHHHHHHh
Confidence 999999999987 5899999999999998766654 459999999642 122233 788888885210
Q ss_pred cCCCceE-EEEEecc-CCCCcccccHHHH---HHHHH------HcCCCEEEEecccccCCc------cc--cccccCcc-
Q 012991 186 KDGKMIR-LAIIDHI-TSMPCVVIPVRKL---VKICR------DEGVDQVFVDAAHAMGSI------KI--DVKEIGAD- 245 (452)
Q Consensus 186 ~~~~~~~-lv~~~~~-~n~tG~~~~l~~i---~~l~~------~~~~~~~ivD~a~~~g~~------~~--~~~~~~~d- 245 (452)
.++++ ++++++| +||||.++|.+++ +++|+ +||+ ++|+|++++.... ++ .....+.+
T Consensus 175 --~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 251 (413)
T 3t18_A 175 --RDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKI-TLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNL 251 (413)
T ss_dssp --HHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEE-EEEEECTTGGGSSSSSTTTGGGGGGTTCCTTE
T ss_pred --hcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcE-EEEEecccccccCChhhHHHHHHHHhhcCCCe
Confidence 02556 8889998 9999999997655 45566 8999 8999999753211 11 11112223
Q ss_pred --EEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH--Hh
Q 012991 246 --FYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS--RF 316 (452)
Q Consensus 246 --~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~ 316 (452)
+++.|++|. +|++| +|++++ ++++++. + ...... .........+...+.++..+++... ++
T Consensus 252 ~~i~~~S~sK~-~~~~G~riG~~~~~~~~~~~~~~-~-~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 321 (413)
T 3t18_A 252 FVVVAFSMSKS-HTAYGLRSGAAVGISSSKEIIEE-F-EASLAH-------SARCNWSNGTHAAQNILIELERAENKKIY 321 (413)
T ss_dssp EEEEEEEHHHH-TTCGGGCCEEEEEEESCHHHHHH-H-HHHHHH-------HHHHHTSSCCHHHHHHHHHTTSHHHHHHH
T ss_pred eEEEEEecCcc-CCCcCcCcEEEEEecCCHHHHHH-H-HHHHHH-------hhhccccCCChHHHHHHHHHhcChHHHHH
Confidence 677899996 66666 799988 6776664 1 111000 0000001233333333333332211 01
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 317 EGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 317 ~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
....+.++++++++++++.+.|.++ ++++..++. +.++|+... +..++.+.|.+ +||.+.++
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~--~~~~~~~~~---------~~~~~~~~l~~-~gv~v~~g----- 383 (413)
T 3t18_A 322 EQELVDLRNMLKSRADVFVTAAKEN-KLTMIPYFG--GFFTFIPTD---------KAFDIVKDLEK-ENIFTIPS----- 383 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCS--SSCEEEECS---------CHHHHHHHHHH-TTEECEEC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCCCc--eEEEEeCCC---------CHHHHHHHHHh-CCEEEecC-----
Confidence 1134567788889999999999887 787766554 556666542 56788888865 59998642
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
++++||+++..++++.++++.++++++
T Consensus 384 ----------------~~~iRis~~~~~~~~~l~~l~~~l~~~ 410 (413)
T 3t18_A 384 ----------------AKGIRVAICGVGEEKIPKLVQRLAFYT 410 (413)
T ss_dssp ----------------SSEEEECTTTSCGGGHHHHHHHHHHHH
T ss_pred ----------------CCceEEEEeeCCHHHHHHHHHHHHHHH
Confidence 368999998655555455555554443
No 160
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.94 E-value=5.5e-25 Score=217.26 Aligned_cols=306 Identities=13% Similarity=0.116 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE
Q 012991 78 LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS 157 (452)
Q Consensus 78 ~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~ 157 (452)
..+...++++++++++|.+ +.+++ ++|++|+..++. + +++||+|+++++.|++.+..+..+++..|++
T Consensus 65 ~~p~~~~l~~~la~~~g~~--~~i~~-~sG~~ai~~~~~-l--------~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~ 132 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDGAK--YCLAF-ASGLAATVTITH-L--------LKAGDQIICMDDVYGGTNRYFRQVASEFGLK 132 (403)
T ss_dssp -CHHHHHHHHHHHHHHTCS--EEEEE-SCHHHHHHHHHT-T--------SCTTCEEEEESSCCHHHHHHHHHTGGGGTCE
T ss_pred CCchHHHHHHHHHHHhCCC--cEEEE-CCHHHHHHHHHH-H--------hCCCCEEEEeCCCcchHHHHHHHHHHHcCCE
Confidence 3456789999999999985 45554 555799998887 5 4889999999999999887776656778999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcC-CCEEEEecccccCCcc
Q 012991 158 VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEG-VDQVFVDAAHAMGSIK 236 (452)
Q Consensus 158 v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~-~~~~ivD~a~~~g~~~ 236 (452)
++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|+++|+++| + ++|+|++++.+...
T Consensus 133 v~~v~~----~d----~~~l~~~i------~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~-~livD~~~~~~~~~ 197 (403)
T 3cog_A 133 ISFVDC----SK----IKLLEAAI------TPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDI-ILVVDNTFMSPYFQ 197 (403)
T ss_dssp EEEECT----TS----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCC-EEEEECTTTCTTTC
T ss_pred EEEECC----CC----HHHHHHhc------CcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCC-EEEEECCCcccccC
Confidence 999943 32 68888888 578999999999999999999999999999999 9 79999999887542
Q ss_pred ccccccCccEEEEcCcccCcCCCC--cEEEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH
Q 012991 237 IDVKEIGADFYVSNLHKWFFCPPS--VAFLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV 313 (452)
Q Consensus 237 ~~~~~~~~d~~~~s~~K~l~g~~G--~G~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 313 (452)
..+. +++|+++.|++|+++|+.| .|+++++ +++.+. + .... ..+.++.+.....+...+++.
T Consensus 198 ~~~~-~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~-l-~~~~-----------~~~g~~~~~~~~~~~~~~l~~- 262 (403)
T 3cog_A 198 RPLA-LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNR-L-RFLQ-----------NSLGAVPSPIDCYLCNRGLKT- 262 (403)
T ss_dssp CTTT-TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHH-H-HHHH-----------HHHCCCCCHHHHHHHHHHHTT-
T ss_pred Cccc-cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHH-H-HHHH-----------HhcCCCCCHHHHHHHHhhhhH-
Confidence 2222 5789999999999777766 4999886 455543 1 1110 001112222222122222222
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHc--------------CCCcCCCc-ccccceEEEEcCCccccCChhhHHHHHH
Q 012991 314 SRFEGGIDGIMQRNHEQALKMARMLANAW--------------GTSLGSPP-EICAAMVMVGLPSRLRVMGEDDALRLRG 378 (452)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (452)
.....++..+++..+.+.|.+.+ ++.+..++ ...++++.|.++. . ...+.+
T Consensus 263 ------l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~------~--~~~~~~ 328 (403)
T 3cog_A 263 ------LHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG------T--LQHAEI 328 (403)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS------C--HHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC------C--HHHHHH
Confidence 23334445556666666665542 11111111 1237788888751 1 234555
Q ss_pred HHhhhcceEeee---cc------cCCCCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 379 HLRVRFGVEVPI---HY------QAPKDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 379 ~L~~~~gI~v~~---~~------~~~~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
.|.+ .||.+.. +. .+.. ..++..+. ..+.+..++++|+|++..+++++|+++.++|+++++
T Consensus 329 ~l~~-~~i~~~~~s~G~~~sl~~~p~~-~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 329 FLKN-LKLFTLAESLGGFESLAELPAI-MTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp HHHH-CSSSEECSCCSSSSCEEECTTT-TTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred HHHh-CCcceEccCCCCcceeeecccc-cccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 5544 5775532 11 1110 00111110 001123368999999999989999999999988765
No 161
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.94 E-value=9.9e-26 Score=224.32 Aligned_cols=351 Identities=11% Similarity=0.041 Sum_probs=223.6
Q ss_pred CeEEeccCCCC----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH--H
Q 012991 39 GVARINNGSFG----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA--A 112 (452)
Q Consensus 39 ~~~~l~~~~~~----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~--~ 112 (452)
.++.|+.+.+. +.|+.+.+++.+.... ..+.....|....+..++|++++++++++ +++|++|+|+++++ .
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~-~~~i~~t~G~~~al~l~ 109 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRT--KDGVDCRNYGGLLGIADIRELWAEALGLP-ADLVVAQDGSSLNIMFD 109 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCCBC--TTCCBTTSSCCSSCCHHHHHHHHHHHTCC-GGGEEECSSCHHHHHHH
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHHhh--ccchhhhCCCCCCCCHHHHHHHHHHhCCC-hhHEEEecchHHHHHHH
Confidence 47889887764 3444466655432100 01111223444555788999999999996 78999999999997 6
Q ss_pred HHHHHhhcccccCC-C--C-CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccC
Q 012991 113 IVLQQIGRGFTEGR-F--H-RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 113 ~~~~~l~~~~~~~~-~--~-~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~ 187 (452)
+++.++........ . . .+++|++++|+|++....+ +..|.+++.+++ ++++ + +++|++.++
T Consensus 110 ~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~----~~~g~~~~~v~~----~~~g-~d~~~l~~~l~----- 175 (422)
T 3d6k_A 110 LISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT----EHFGFEMINVPM----TDEG-PDMGVVRELVK----- 175 (422)
T ss_dssp HHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH----HHHTCEEEEEEE----ETTE-ECHHHHHHHHT-----
T ss_pred HHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHH----HHcCCEEEecCC----CCCC-CCHHHHHHHHh-----
Confidence 67676632100000 0 0 1458999999999876655 445999999965 2233 4 899999994
Q ss_pred CCceEEEE-EeccCCCCcccccHH---HHHHHHH-HcCCCEEEEecccccCCc------cccc-------cccCccEEEE
Q 012991 188 GKMIRLAI-IDHITSMPCVVIPVR---KLVKICR-DEGVDQVFVDAAHAMGSI------KIDV-------KEIGADFYVS 249 (452)
Q Consensus 188 ~~~~~lv~-~~~~~n~tG~~~~l~---~i~~l~~-~~~~~~~ivD~a~~~g~~------~~~~-------~~~~~d~~~~ 249 (452)
..++++|+ +++++||||.++|.+ +|+++|+ ++|+ ++|+|++|+.+.. ...+ ...+.++++.
T Consensus 176 ~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 254 (422)
T 3d6k_A 176 DPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDF-RIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMS 254 (422)
T ss_dssp STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTC-EEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEE
T ss_pred cCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCC-EEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEc
Confidence 24789888 789999999999977 6777787 8999 8999999973111 0111 1234678899
Q ss_pred cCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 250 NLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 250 s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
|++|++.++..+|++++++++++. + ... ......+.+...+.++..+++....+..-++.+++++++
T Consensus 255 S~SK~~~~GlriG~~~~~~~l~~~-l-~~~-----------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 321 (422)
T 3d6k_A 255 STSKITHAGSGVSFFASSKENIEW-Y-ASH-----------ANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAP 321 (422)
T ss_dssp ESTTTSCTTSSCEEEECCHHHHHH-H-HHH-----------HHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred ChhhhcCcccceEEEEeCHHHHHH-H-HHH-----------HHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 999963222338999998877664 1 111 000112233334433433443211000124556666777
Q ss_pred HHHHHHHHHHHH----cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeee-cccCCCCCCCCCCC
Q 012991 330 QALKMARMLANA----WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPI-HYQAPKDDGQPQAG 404 (452)
Q Consensus 330 ~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~-~~~~~~~~~~~~~~ 404 (452)
+++.+.+.|.+. +++.+..|.. ++++|+.++. . +...+.+.|.+ +||.+.+ +..+....
T Consensus 322 ~~~~l~~~L~~~l~~~~~~~~~~p~~--g~~~~~~~~~------~-~~~~~~~~l~~-~gV~v~~~g~~f~~~~------ 385 (422)
T 3d6k_A 322 KFERVLEILDSRLSEYGVAKWTSPTG--GYFISVDVVP------G-TASRVVELAKE-AGIALTGAGSSFPLHN------ 385 (422)
T ss_dssp HHHHHHHHHHHHHGGGTCEEECCCSB--SSCEEEEEST------T-CHHHHHHHHHH-TTEECCCTTTTSGGGC------
T ss_pred HHHHHHHHHHHhcCcCCceEEeCCCc--ceEEEEECCC------C-CHHHHHHHHHH-CCeEEEcCccccCCCC------
Confidence 777777777653 2245445543 7788998862 2 45678787765 5999976 33221000
Q ss_pred CCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 405 ARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 405 ~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
....+++|||++. ++.+++++++++|++++++
T Consensus 386 -----~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 386 -----DPNNENIRLAPSL-PPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp -----CTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHH
Confidence 0135799999997 7999999999999998864
No 162
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.94 E-value=7.4e-25 Score=214.43 Aligned_cols=351 Identities=13% Similarity=0.078 Sum_probs=217.1
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHH-HhHhCCCCCCcEEEecChhHHHHHHHHHhh
Q 012991 41 ARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAV-KDLINADDVGEISLVDNATTAAAIVLQQIG 119 (452)
Q Consensus 41 ~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~~i~~t~g~t~a~~~~~~~l~ 119 (452)
|.++.+..++.+ .+.+++.+.+..-. +.. ..+...++++++ ++++|. ..++++++|||+|+.+++.++
T Consensus 5 i~~~~p~~~~~~-~i~~a~~~~~~~~~------~~~-~~~~~~~l~~~~~a~~~g~--~~~~v~~~sgt~al~~al~~l- 73 (377)
T 3ju7_A 5 IPFLRASTVPVI-EYLDELKEIDASHI------YTN-YGPINQRFEQTIMSGFFQN--RGAVTTVANATLGLMAAIQLK- 73 (377)
T ss_dssp BCSCCCCCCCGG-GGHHHHHHHHHHTC------CSS-SCHHHHHHHHHHHHHTSTT--CSEEEEESCHHHHHHHHHHHH-
T ss_pred eeccCCCCCCcH-HHHHHHHHHHHcCC------ccc-CCHHHHHHHHHHHHHHhCC--CCeEEEeCCHHHHHHHHHHHc-
Confidence 455544444444 47888887765421 110 124578899999 999993 268899999999999999886
Q ss_pred cccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec
Q 012991 120 RGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 120 ~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
.+++||+|+++.++|.++..++ ...|++++.++++. +++.+ +++++++++.. ..+|++|+
T Consensus 74 ------~~~~Gd~Vi~~~~~~~~~~~~~----~~~G~~~~~v~~~~---~~~~~d~~~l~~~i~~~---~~~tk~v~--- 134 (377)
T 3ju7_A 74 ------KRKKGKYALMPSFTFPATPLAA----IWCGLEPYFIDISI---DDWYMDKTVLWDKIEEL---KEEVAIVV--- 134 (377)
T ss_dssp ------SCTTCCEEEEESSSCTHHHHHH----HHTTCEEEEECBCT---TTCSBCHHHHHHHHHHH---GGGEEEEC---
T ss_pred ------CCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCC---ccCCcCHHHHHHHHhcC---CCCceEEE---
Confidence 3689999999999999986665 44699999996521 23344 89999988420 12388887
Q ss_pred cCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccccccc---CccEEEE--cCcccCcCCCCcEEEEEecC-ccc
Q 012991 199 ITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEI---GADFYVS--NLHKWFFCPPSVAFLYCRKS-ILS 272 (452)
Q Consensus 199 ~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~---~~d~~~~--s~~K~l~g~~G~G~l~~~~~-~~~ 272 (452)
++|++|...|+++|.++|+ +|+ ++|+|++|+.|... +.... ..|+.++ +.+|++.++. .|+++.+++ +.+
T Consensus 135 ~~~~~G~~~~~~~i~~la~-~~~-~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~-gG~~~~~~~~l~~ 210 (377)
T 3ju7_A 135 PYATFGSWMNLEEYEELEK-KGV-PVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGE-GGLIYSKNEEDIQ 210 (377)
T ss_dssp CBCGGGBCCCCHHHHHHHH-TTC-CBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBS-CEEEEESCHHHHH
T ss_pred EECCCCCccCHHHHHHHHh-cCC-EEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCC-cEEEEECCHHHHH
Confidence 4567899999999999999 999 79999999988652 21122 1355554 5679876644 477776643 333
Q ss_pred cCCCCCceeccCCCCcccccccccccCccccccHHHH--HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC-CC
Q 012991 273 SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSA--VTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG-SP 349 (452)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--l~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~ 349 (452)
. + ..... +|..........|.... +..+.++ +..+. .++...++.+++++++.+.|.+++++.+. .+
T Consensus 211 ~-~-~~~~~--~g~~~~~~~~~~g~~~~--~~~~~aa~~~~~l~----~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 280 (377)
T 3ju7_A 211 R-I-KRMGN--FGFDTNRECTMMGFNCK--MSEYAAAIGIATMK----KWDDKLKERTRISEWYKQLLQSNGLMKKGWQL 280 (377)
T ss_dssp H-H-HHHTB--TTBCTTSCBCSSCCBCC--CCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBC
T ss_pred H-H-HHHHh--cCCCCCCceeeccccCC--CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCccccccC
Confidence 2 1 11100 11100000111121111 1122222 23333 56777888899999999999988654221 12
Q ss_pred cc---cccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC-CCCCCCCCCCCCCCC----CCccceEEeccc
Q 012991 350 PE---ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA-PKDDGQPQAGARDKD----GIITGYARISHQ 421 (452)
Q Consensus 350 ~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~-~~~~~~~~~~~~~~~----~~~~~~iRis~~ 421 (452)
.. ....++.+.++ +..+.+++.+.|.++ ||.++.++.. .+....-........ ......||++++
T Consensus 281 ~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~ 353 (377)
T 3ju7_A 281 QKTEAVIQQFMPILCP------EEVRNKQVIEDLKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLW 353 (377)
T ss_dssp CCCSCBCCSSEEEECC------TTSCHHHHHHHHHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCC
T ss_pred CCCCcceEEEEEEEeC------ChhhHHHHHHHHHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCC
Confidence 11 11123455554 233578899999775 9998766531 111000000000000 123568999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
...|++|++++++.|++++..
T Consensus 354 ~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 354 EGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp TTCCHHHHHHHHHHHTC----
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 163
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.93 E-value=2.4e-24 Score=214.49 Aligned_cols=337 Identities=13% Similarity=0.119 Sum_probs=218.2
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHH---Hhhccccc
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQ---QIGRGFTE 124 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~---~l~~~~~~ 124 (452)
.+..++.+.+++.+.+... .... ..+...+...+++++|+++++.+.+++|++|+||++|+.+++. ++
T Consensus 55 lg~~~~~v~~a~~~~~~~~-~~~~--~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~------ 125 (426)
T 1sff_A 55 TGHLHPKVVAAVEAQLKKL-SHTC--FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA------ 125 (426)
T ss_dssp TCBTCHHHHHHHHHHTTTC-SCCC--TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH------
T ss_pred cCCCCHHHHHHHHHHHHhC-CCcc--ccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHh------
Confidence 4556777999998876432 1111 1234567789999999999932323899999999999999987 33
Q ss_pred CCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE-------------EEEEeCCCCC-CChHHH-HHHHHHHHhccccCCC
Q 012991 125 GRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS-------------VVEVQLPFPL-ASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 125 ~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~-------------v~~~~~~~~~-~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
.+++ +|++.++.|++....+.. ..|.+ ++.++++... +..+.+ +++|++++++.. ..+
T Consensus 126 --~~~~-~vi~~~p~y~~~~~~~~~---~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~ 198 (426)
T 1sff_A 126 --TKRS-GTIAFSGAYHGRTHYTLA---LTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APE 198 (426)
T ss_dssp --HTCC-EEEEETTCCCCSSHHHHH---HSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGG
T ss_pred --hCCC-eEEEECCCcCCCchHhhh---hcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCC
Confidence 2455 899999998875443322 22322 6666542110 112334 889999886310 014
Q ss_pred ceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCCCC
Q 012991 190 MIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
++++|+++...++||...+ +++|.++|++||+ ++|+|++|+ ++.. .++.....+|++ |++|++ ++ |
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~-~~-G 273 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI-MLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSI-AG-G 273 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGG-GT-S
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEechhhccCcccchhhhhhcCCCCCEE--EEcccc-cC-C
Confidence 7888888544334997777 8999999999999 899999998 3211 122223346766 566975 44 6
Q ss_pred --cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 261 --VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 261 --~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
+|++++++++++. +. ... . ..+.+.+...+.++.++++++.+ +.+.++++++++++.+.|
T Consensus 274 lriG~~~~~~~~~~~-l~-~~~---~--------~~~~~~~~~~~~a~~aal~~~~~-----~~~~~~~~~~~~~l~~~l 335 (426)
T 1sff_A 274 FPLAGVTGRAEVMDA-VA-PGG---L--------GGTYAGNPIACVAALEVLKVFEQ-----ENLLQKANDLGQKLKDGL 335 (426)
T ss_dssp SCCEEEEEEHHHHTT-SC-TTS---B--------CCSSSSCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcHHHHhh-hc-cCC---c--------CcCCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHH
Confidence 6999999887765 21 110 0 00123344455556666777664 245677888889998888
Q ss_pred HHHc-CCCcCCCcccccceEEEEcCCcccc--CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 339 ANAW-GTSLGSPPEICAAMVMVGLPSRLRV--MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 339 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
.++. .+.........+.++++.++..... .+..+..++.+.|.++ ||.+..+... +++
T Consensus 336 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~------------------~~~ 396 (426)
T 1sff_A 336 LAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDK-GLILLSCGPY------------------YNV 396 (426)
T ss_dssp HHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT-TEECEEESTT------------------SCE
T ss_pred HHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHC-CcEEecCCCC------------------CCE
Confidence 7753 1322111112377888887421000 0234567899998765 9998754321 468
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+|++++..++++|+++++++|+++++.
T Consensus 397 iRi~~~~~~~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 397 LRILVPLTIEDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 999998888999999999999998754
No 164
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.93 E-value=1.2e-25 Score=235.15 Aligned_cols=322 Identities=15% Similarity=0.059 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEE
Q 012991 80 KGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVV 159 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~ 159 (452)
....++++.+|+++|++ ..+++++|+|+|+..++.++ +++||+|++++++|.|+..++ +...|++++
T Consensus 173 ~~i~e~e~~lA~~~gae--~~i~v~nGtt~an~~ai~al--------~~pGD~VLv~~~~H~S~~~~~---~~l~Ga~~v 239 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSAL--------VSNGDLVLFDRNNHKSVYNSA---LAMAGGRPV 239 (730)
T ss_dssp THHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHH--------CCTTCEEEEETTCCHHHHHHH---TTTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh--------cCCCCEEEEcCCchHHHHHHH---HHHCCCEEE
Confidence 46799999999999996 56778888889999999987 589999999999999988762 244699998
Q ss_pred EEeCCCC-CCChHHH-HHHH-----HHHHhcc-cc--CCCce-EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEec
Q 012991 160 EVQLPFP-LASEEEI-INEF-----KKGIEKG-KK--DGKMI-RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDA 228 (452)
Q Consensus 160 ~~~~~~~-~~~~~~~-~~~l-----~~~i~~~-~~--~~~~~-~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~ 228 (452)
.++.... ..-.+.+ +++| ++++++. +. .+.++ ++|+++++ |++|.+.|+++|+++|+++|+ ++++|+
T Consensus 240 ~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~-~livDe 317 (730)
T 1c4k_A 240 YLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCD-YIEFDS 317 (730)
T ss_dssp EECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBS-EEEEEC
T ss_pred EEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCC-eEEEEc
Confidence 8854210 0000112 4444 8888531 00 01122 89999988 589999999999999999999 899999
Q ss_pred ccccCC--c-------cccccccCcc----EEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccc
Q 012991 229 AHAMGS--I-------KIDVKEIGAD----FYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWI 295 (452)
Q Consensus 229 a~~~g~--~-------~~~~~~~~~d----~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 295 (452)
||+.+. . +++...+++| +++.|+||++.|+.+.|+++++++.+.. ...+.... ...........
T Consensus 318 Ah~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g--~~~~i~~~-~~~~~~~~~~s 394 (730)
T 1c4k_A 318 AWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKG--QLRYCDHK-HFNNSFNLFMS 394 (730)
T ss_dssp TTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTT--STTCCCHH-HHHHHHHHHSC
T ss_pred ccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcC--cccccCHH-HHHHHHHHhCC
Confidence 987431 1 1233234677 9999999998888888899888776521 00010000 00000112334
Q ss_pred cccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HcCCCcCCCcc-----------------------
Q 012991 296 GTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN-AWGTSLGSPPE----------------------- 351 (452)
Q Consensus 296 ~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~----------------------- 351 (452)
+++++..+.++.++++++... .| +...++..++++++++.|.+ ++|+++..+..
T Consensus 395 tsp~~~~iaal~aA~~~l~~~-~g-~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (730)
T 1c4k_A 395 TSPFYPMYAALDVNAAMQEGE-AG-RKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRF 472 (730)
T ss_dssp SSCCHHHHHHHHHHHHHHSHH-HH-HHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBC
T ss_pred CCCcHHHHHHHHHHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhcc
Confidence 678887778888888877641 13 45567789999999999988 67887755431
Q ss_pred ---------c---cc--ce----EEEEcCCcc---c--cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCC
Q 012991 352 ---------I---CA--AM----VMVGLPSRL---R--VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDK 408 (452)
Q Consensus 352 ---------~---~~--~~----~~~~~~~~~---~--~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~ 408 (452)
. .+ .+ +.+..|... + ...+.++..+.+.|.++ ||.+...
T Consensus 473 ~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~-GI~v~~~----------------- 534 (730)
T 1c4k_A 473 EKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDH-GIIPEKS----------------- 534 (730)
T ss_dssp CTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHT-TCCCSEE-----------------
T ss_pred CccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHC-CcEEEEC-----------------
Confidence 0 01 11 456554100 0 01245788999999875 9987521
Q ss_pred CCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 409 DGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 409 ~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+.+|++++.++|.+++++++++|+++.+.
T Consensus 535 ---~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~ 565 (730)
T 1c4k_A 535 ---DLNSILFLMTPAETPAKMNNLITQLLQLQRL 565 (730)
T ss_dssp ---CSSEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 2368999999999999999999999998754
No 165
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.93 E-value=1.2e-24 Score=212.48 Aligned_cols=334 Identities=14% Similarity=0.118 Sum_probs=214.8
Q ss_pred CcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCC
Q 012991 51 CPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRN 130 (452)
Q Consensus 51 ~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g 130 (452)
.++++.+++.+.+... .+...+...++++.++++++.+ ++++++|||+|+..++.++ .+++|
T Consensus 14 ~~~~v~~a~~~~~~~~--------~~~~~~~~~~l~~~la~~~~~~---~~~~~~sGt~al~~al~~~-------~~~~g 75 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRHG--------QYILGPEVTELEDRLADFVGAK---YCISCANGTDALQIVQMAL-------GVGPG 75 (367)
T ss_dssp HHHHHHHHHHHHHHHC--------CCSSCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHT-------TCCTT
T ss_pred cCHHHHHHHHHHHhcC--------CccCChHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHh-------CCCCc
Confidence 4455777776665431 1223456889999999999984 8999999999999999976 25889
Q ss_pred CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccH
Q 012991 131 DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV 209 (452)
Q Consensus 131 ~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l 209 (452)
|+|+++.++|++...++. ..|.+++.++++. +.+.+ ++++++++ ++++++|+ ++|++|...|+
T Consensus 76 d~Vi~~~~~~~~~~~~~~----~~G~~~~~~~~~~---~~~~~d~~~l~~~i------~~~~~~v~---~~~~~G~~~~~ 139 (367)
T 3nyt_A 76 DEVITPGFTYVATAETVA----LLGAKPVYVDIDP---RTYNLDPQLLEAAI------TPRTKAII---PVSLYGQCADF 139 (367)
T ss_dssp CEEEEESSSCTHHHHHHH----HTTCEEEEECBCT---TTCSBCGGGTGGGC------CTTEEEEC---CBCGGGCCCCH
T ss_pred CEEEECCCccHHHHHHHH----HcCCEEEEEecCC---ccCCcCHHHHHHhc------CcCCcEEE---eeCCccChhhH
Confidence 999999999999877654 4699999995521 11333 78888888 57898888 56789999999
Q ss_pred HHHHHHHHHcCCCEEEEecccccCCccccccccCc--cEEEEcC--cccCcCCCCcEEEEEec-CccccCCCCCceeccC
Q 012991 210 RKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGA--DFYVSNL--HKWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEF 284 (452)
Q Consensus 210 ~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~--d~~~~s~--~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~ 284 (452)
++|.++|+++|+ ++|+|++|+.|.. .+....+. |++++|+ +|+++++...|+++.++ ++.+. + .... .+
T Consensus 140 ~~i~~la~~~~~-~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~-~-~~~~--~~ 213 (367)
T 3nyt_A 140 DAINAIASKYGI-PVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATA-I-RQIA--RH 213 (367)
T ss_dssp HHHHHHHHHTTC-CBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHH-H-HHHT--BT
T ss_pred HHHHHHHHHcCC-EEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHH-H-HHHH--hc
Confidence 999999999999 7999999998765 22222222 8999995 89854412257777754 34332 1 1110 01
Q ss_pred CCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc---cccceEEEEc
Q 012991 285 GNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE---ICAAMVMVGL 361 (452)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~~ 361 (452)
|..........|.......+....++..+. .++...++.+++.+++.+.|.++ ++.+...+. ....++.+..
T Consensus 214 g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~----~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~ 288 (367)
T 3nyt_A 214 GQDRRYHHIRVGVNSRLDTLQAAILLPKLE----IFEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRM 288 (367)
T ss_dssp TEEETTEECSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEEC
T ss_pred CCCcCceeeccCcCCCccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEe
Confidence 100000000112222222222233333333 46777888889999999999987 555433221 1122344444
Q ss_pred CCccccCChhhHHHHHHHHhhhcceEeeeccc-CCCCCCCCCCCCCCCC----CCccceEEecccccCCHHHHHHHHHHH
Q 012991 362 PSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQ-APKDDGQPQAGARDKD----GIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~-~~~~~~~~~~~~~~~~----~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
+ +.+.+.+.|.++ ||.++.++. +.+.... ........ ......+|++++..+|++||+++++.|
T Consensus 289 ~---------~~~~l~~~L~~~-GI~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~ 357 (367)
T 3nyt_A 289 D---------NRESVQASLKAA-GVPTAVHYPIPLNKQPA-VADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAAL 357 (367)
T ss_dssp S---------SHHHHHHHHHHH-TCCCBCSCSSCGGGSGG-GCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHC-CCceeccCCCccccChh-hhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHH
Confidence 2 567899999775 999876553 1110000 00000000 123568999999999999999999999
Q ss_pred HHHH
Q 012991 437 ILLV 440 (452)
Q Consensus 437 ~~~~ 440 (452)
+++-
T Consensus 358 ~~~~ 361 (367)
T 3nyt_A 358 TNLE 361 (367)
T ss_dssp HC--
T ss_pred HHHh
Confidence 8754
No 166
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.93 E-value=8.9e-24 Score=210.78 Aligned_cols=327 Identities=11% Similarity=0.133 Sum_probs=210.7
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccc--ccC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGF--TEG 125 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~--~~~ 125 (452)
.+..++.+.+++.+.+.... ..+.. + ..+...+++++++++++. ++++|++|||+|+..++.++. ++ ...
T Consensus 79 lgh~~p~v~~ai~~~~~~~~-~~~~~--~-~~~~~~~l~~~la~~~g~---~~v~~~~sGseA~~~al~~a~-~~~~~~~ 150 (433)
T 1z7d_A 79 QGHCHPNILNAMINQAKNLT-ICSRA--F-FSVPLGICERYLTNLLGY---DKVLMMNTGAEANETAYKLCR-KWGYEVK 150 (433)
T ss_dssp TCBTCHHHHHHHHHHHTTCS-CCCTT--S-EEHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHH-HHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHhCC-CccCC--c-CCHHHHHHHHHHHhhcCC---CeEEEeCCHHHHHHHHHHHHH-HHhhhcc
Confidence 34467779999988875421 11111 1 355678899999999975 689999999999999998652 11 000
Q ss_pred CCCCC-CEEEEeCCcchhHHHHHHHHHHh----cC-----cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEE
Q 012991 126 RFHRN-DTVLMLHCAFQAVKKSIQAYVTR----AG-----GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 126 ~~~~g-~~Vl~~~~~~~s~~~~~~~~a~~----~g-----~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
.+.+| ++|++.++.|++....+..+... .+ ..+..+ +.++ +++|+++++ ++++++|+
T Consensus 151 g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~----~~~d----~~~le~~l~-----~~~~~~vi 217 (433)
T 1z7d_A 151 KIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKV----PYDD----LEALEEELK-----DPNVCAFI 217 (433)
T ss_dssp CCCTTCCEEEEETTC--------------------------CEEEE----CTTC----HHHHHHHHT-----STTEEEEE
T ss_pred CCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEe----CCCC----HHHHHHHhC-----CCCEEEEE
Confidence 12456 89999999988754433221110 00 234444 3222 788998884 35789999
Q ss_pred EeccCCCCcccc----cHHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEEEE
Q 012991 196 IDHITSMPCVVI----PVRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAFLY 265 (452)
Q Consensus 196 ~~~~~n~tG~~~----~l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~l~ 265 (452)
++..++++|.+. ++++|.++|++||+ ++|+|++|+ +|... .+.....+|++ |++|+++++ ..+|+++
T Consensus 218 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G~v~ 294 (433)
T 1z7d_A 218 VEPIQGEAGVIVPSDNYLQGVYDICKKYNV-LFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPISAVL 294 (433)
T ss_dssp ECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEE
T ss_pred EECCCCCCCccCCCHHHHHHHHHHHHHcCC-EEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeEEEE
Confidence 988888899876 68999999999999 899999996 32211 12223357887 456987654 3379999
Q ss_pred EecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CC
Q 012991 266 CRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GT 344 (452)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~ 344 (452)
+++++++. + .+.. .+ . +.+.+.....+..++++.+.+ +.+.++.+++.+++.+.|.++. ++
T Consensus 295 ~~~~~~~~-l-~~~~---~~------~--t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~ 356 (433)
T 1z7d_A 295 ANDDIMLV-I-KPGE---HG------S--TYGGNPLAASICVEALNVLIN-----EKLCENAEKLGGPFLENLKRELKDS 356 (433)
T ss_dssp ECHHHHTT-C-CTTC---CC------C--TTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ECHHHHhh-h-cccc---cc------c--cCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99887765 2 2110 00 0 012233344444455665553 2467788899999999998763 33
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.........+.++++.++. ...+..++.+.|.++ ||.+... ..+++|++++..+
T Consensus 357 ~~~~~~~~~g~~~~i~~~~-----~~~~~~~~~~~l~~~-Gv~v~~~--------------------~~~~iRi~~~~~~ 410 (433)
T 1z7d_A 357 KIVRDVRGKGLLCAIEFKN-----ELVNVLDICLKLKEN-GLITRDV--------------------HDKTIRLTPPLCI 410 (433)
T ss_dssp TTEEEEEEETTEEEEEECT-----TTCCHHHHHHHHHHT-TEECCEE--------------------TTTEEEECCCTTC
T ss_pred CCeEEEEeeeeEEEEEEcc-----ChhHHHHHHHHHHHC-CeEEecC--------------------CCCEEEEECCcCC
Confidence 3222222346788888762 113467899999775 9998642 1368999999888
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
|++|+++++++|+++++.
T Consensus 411 t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 411 TKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 167
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.93 E-value=1.9e-24 Score=214.84 Aligned_cols=325 Identities=14% Similarity=0.096 Sum_probs=213.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..+..++.+.+++.+.+.... ..+.. ...+...+++++++++++. +++++|+||++|+..++.++..... ..
T Consensus 70 ~lG~~~p~v~~ai~~~~~~~~-~~~~~---~~~~~~~~l~~~la~~~g~---~~v~~~~ggteA~~~al~~~~~~~~-~~ 141 (420)
T 2pb2_A 70 ALGHCHPALVEALKSQGETLW-HTSNV---FTNEPALRLGRKLIDATFA---ERVLFMNSGTEANETAFKLARHYAC-VR 141 (420)
T ss_dssp TTCBTCHHHHHHHHHHHTTCC-CCCTT---SCCHHHHHHHHHHHHHSSC---SEEEEESSHHHHHHHHHHHHHHHHH-HH
T ss_pred ccCCCCHHHHHHHHHHHHhcc-cccCc---cCCHHHHHHHHHHHhhCCC---CeEEEeCCHHHHHHHHHHHHHHHhh-hc
Confidence 345667889999988875421 11111 1356778999999999975 6899999999999999997631000 00
Q ss_pred CCCC-CEEEEeCCcchhHHHHHHHHHHhcCcE------------EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEE
Q 012991 127 FHRN-DTVLMLHCAFQAVKKSIQAYVTRAGGS------------VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 127 ~~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g~~------------v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l 193 (452)
-.+| ++|++.++.|++....+..+ .|.+ +..++ .++ +++|++++ .+++++
T Consensus 142 ~~~g~~~vi~~~~~yh~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~----~~d----~~~le~~i------~~~~~~ 204 (420)
T 2pb2_A 142 HSPFKTKIIAFHNAFHGRSLFTVSV---GGQPKYSDGFGPKPADIIHVP----FND----LHAVKAVM------DDHTCA 204 (420)
T ss_dssp TCTTCCEEEEETTCCCCSSHHHHHH---SSCHHHHTTSSSCCSCEEEEC----TTC----HHHHHHHC------CTTEEE
T ss_pred cCCCCCEEEEEeCCcCCcCHHHHHh---cCCccccccCCCCCCCeEEec----CCC----HHHHHHHh------ccCceE
Confidence 0155 59999999987754443221 2322 55553 222 78899988 568999
Q ss_pred EEEeccCCCCccc----ccHHHHHHHHHHcCCCEEEEecccc-cCCc--c--ccccccCccEEEEcCcccCcCCCCcEEE
Q 012991 194 AIIDHITSMPCVV----IPVRKLVKICRDEGVDQVFVDAAHA-MGSI--K--IDVKEIGADFYVSNLHKWFFCPPSVAFL 264 (452)
Q Consensus 194 v~~~~~~n~tG~~----~~l~~i~~l~~~~~~~~~ivD~a~~-~g~~--~--~~~~~~~~d~~~~s~~K~l~g~~G~G~l 264 (452)
|++++++|++|.+ .++++|.++|++||+ ++|+|++|+ ++.. . .+.....+|+++ ++|+++++..+|++
T Consensus 205 vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi-~lI~Dev~~g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~ 281 (420)
T 2pb2_A 205 VVVEPIQGEGGVQAATPEFLKGLRDLCDEHQA-LLVFDEVQCGMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAM 281 (420)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEE
T ss_pred EEEeCCcCCCCeecCCHHHHHHHHHHHHHcCC-EEEEEcCCcCcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEE
Confidence 9999999888862 458899999999999 899999995 2211 1 122233578875 56987655458999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-C
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-G 343 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~ 343 (452)
++++++++. + .+. ..+ . +.+.+...+.+..++++.+. . +.+.++++++++++.+.|.++. +
T Consensus 282 ~~~~~l~~~-l-~~~---~~~------~--t~~~~~~~~aa~~a~L~~~~----~-~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 282 LTTQEIASA-F-HVG---SHG------S--TYGGNPLACAVAGAAFDIIN----T-PEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp EECHHHHTT-C-C-------C------C--EECCCHHHHHHHHHHHHHHS----S-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEhHHHHHh-h-cCC---CcC------c--ccCcCHHHHHHHHHHHHHHH----h-ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 998886664 2 111 000 0 01223333333334444433 2 5678888999999999997752 2
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY 423 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 423 (452)
+.........+.++++.++.. ...+..++.+.|.+ .||.+..+ .++++|++++..
T Consensus 344 ~~~~~~~~~~g~~~~v~~~~~----~~~~~~~l~~~l~~-~Gi~v~~~--------------------~~~~iRl~~~~~ 398 (420)
T 2pb2_A 344 FDIFSDIRGMGLLIGAELKPK----YKGRARDFLYAGAE-AGVMVLNA--------------------GADVMRFAPSLV 398 (420)
T ss_dssp HCCEEEEEEETTEEEEEECGG----GTTCHHHHHHHHHH-TTEECEES--------------------STTEEEECCCTT
T ss_pred CCCeEEEEecceEEEEEECCC----chHHHHHHHHHHHH-CCCEEEeC--------------------CCCEEEEECCCC
Confidence 222111112367888887521 01146789999977 59998632 136899999888
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 012991 424 NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 424 ~t~~di~~l~~~l~~~~~~ 442 (452)
++++|+++++++|++++++
T Consensus 399 ~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 399 VEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 8999999999999998754
No 168
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.93 E-value=5.8e-25 Score=231.92 Aligned_cols=313 Identities=12% Similarity=0.080 Sum_probs=226.8
Q ss_pred hhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE
Q 012991 78 LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS 157 (452)
Q Consensus 78 ~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~ 157 (452)
......+.++.+++++|.+ +.+++++|+++|+..++.++ +++||+|++++++|.|+..++.. .|++
T Consensus 203 ~~g~v~~~ee~la~l~G~d--~~i~~~~Gtt~a~~~~i~al--------~~~GD~Vlv~~~~h~s~~~~~~~----~G~~ 268 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGAD--RSWSVVVGTSGSNRTIMQAC--------MTDNDVVVVDRNCHKSIEQGLML----TGAK 268 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHH--------CCTTCEEEEESSCCHHHHHHHHH----HCCE
T ss_pred CccHHHHHHHHHHHHhCCC--ceEEECCcHHHHHHHHHHHh--------cCCCCEEEECCCchHHHHHHHHH----cCCE
Confidence 3456789999999999996 56778888889999999987 58999999999999998887644 5999
Q ss_pred EEEEeCCCCCCChH--------H-HHHHHHHHHhccc----cCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEE
Q 012991 158 VVEVQLPFPLASEE--------E-IINEFKKGIEKGK----KDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQV 224 (452)
Q Consensus 158 v~~~~~~~~~~~~~--------~-~~~~l~~~i~~~~----~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ 224 (452)
++.++... ++.+ . .+++|++++++.+ ..+.++++++++++ |++|.+.|+++|+++|++||+ ++
T Consensus 269 ~v~v~~~~--~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~-~l 344 (755)
T 2vyc_A 269 PVYMVPSR--NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSD-RL 344 (755)
T ss_dssp EEEECCCB--CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCS-EE
T ss_pred EEEEeCCC--CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCC-EE
Confidence 99986531 1111 1 2788888886421 12334569999997 689999999999999999999 79
Q ss_pred EEecccccCCc--cc--cccc-cC--ccE------EEEcCcccCcCCCCcEEEEEecC--ccccCCCCCceeccCCCCcc
Q 012991 225 FVDAAHAMGSI--KI--DVKE-IG--ADF------YVSNLHKWFFCPPSVAFLYCRKS--ILSSDMHHPVVSHEFGNGLP 289 (452)
Q Consensus 225 ivD~a~~~g~~--~~--~~~~-~~--~d~------~~~s~~K~l~g~~G~G~l~~~~~--~~~~~l~~~~~~~~~~~~~~ 289 (452)
++|+||+.+.. +. +... .+ +|+ ++.|+||++.|+.|.|+++++++ .+.. ... .. .
T Consensus 345 ivDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~---~~~-~~------~ 414 (755)
T 2vyc_A 345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINF---SRF-NQ------A 414 (755)
T ss_dssp EEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCH---HHH-HH------H
T ss_pred EEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCH---HHH-HH------H
Confidence 99999975321 10 1111 34 566 99999999888888899988876 2221 000 00 0
Q ss_pred cccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC---------CCcCCCccc--------
Q 012991 290 IESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG---------TSLGSPPEI-------- 352 (452)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~---------~~~~~~~~~-------- 352 (452)
......+++++..+.++.+|++++... |.+.+.++..++++++++.|.++++ +++..+...
T Consensus 415 ~~~~~s~sp~~~~iaal~aA~~~l~~~--gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (755)
T 2vyc_A 415 YMMHATTSPLYAICASNDVAVSMMDGN--SGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKT 492 (755)
T ss_dssp HHHTSCSSCCHHHHHHHHHHHHHHSTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCE
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccc
Confidence 112234788888888888888887742 3567888899999999999998877 555544310
Q ss_pred ---------------------------------c------cceEEEEcCCcccc-----CChhhHHHHHHHHhhhcceEe
Q 012991 353 ---------------------------------C------AAMVMVGLPSRLRV-----MGEDDALRLRGHLRVRFGVEV 388 (452)
Q Consensus 353 ---------------------------------~------~~~~~~~~~~~~~~-----~~~~~~~~l~~~L~~~~gI~v 388 (452)
. ...+.+.++.. +. ..+.++..+.+.|.+ +||.+
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~-~~~G~~~~~g~~~~~l~~~L~~-~gI~~ 570 (755)
T 2vyc_A 493 YDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGM-GEDGELEETGVPAALVTAWLGR-HGIVP 570 (755)
T ss_dssp EEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCB-CTTSSBCSSCCCHHHHHHHHHT-TTCCC
T ss_pred cccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCC-CCCCCccccCCcHHHHHHHHHH-CCCEE
Confidence 0 13456666521 11 114667889999976 79987
Q ss_pred eecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 389 PIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.. ...+.+|++++.++|.+++++++++|+++.+.
T Consensus 571 e~--------------------~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~ 604 (755)
T 2vyc_A 571 TR--------------------TTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRH 604 (755)
T ss_dssp SE--------------------ECSSEEEEECCTTCCTTTTHHHHHHHHHHHHH
T ss_pred ee--------------------cCCCeEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 42 12468999999999999999999999999754
No 169
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.93 E-value=5.6e-25 Score=216.74 Aligned_cols=334 Identities=11% Similarity=0.061 Sum_probs=219.2
Q ss_pred CCCeEEeccCCC----C--CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCC-CCCcEEE--ecC
Q 012991 37 QHGVARINNGSF----G--SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NAD-DVGEISL--VDN 106 (452)
Q Consensus 37 ~~~~~~l~~~~~----~--~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-~~~~i~~--t~g 106 (452)
+.+++.|..+.+ + +.++.+.+++.+.+.. . ....|.......++++++++++ +.. ++++|++ |+|
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~---~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g 99 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET--E---TTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVG 99 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH--C---CCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCC--c---ccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCC
Confidence 467888887763 1 4568899998887643 1 1112333345678899999987 541 2579999 999
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccc
Q 012991 107 ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGK 185 (452)
Q Consensus 107 ~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 185 (452)
|++|+.+++.++. .+.+||+|+++.++|++....+ ...|.+++.++... .+++.+ ++++++.+++.
T Consensus 100 ~~~a~~~~~~~~~------~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~~~- 166 (394)
T 2ay1_A 100 GTGALRQALELAR------MANPDLRVFVSDPTWPNHVSIM----NFMGLPVQTYRYFD--AETRGVDFEGMKADLAAA- 166 (394)
T ss_dssp HHHHHHHHHHHHH------HHCTTCCEEEEESCCHHHHHHH----HHHTCCEEEEECEE--TTTTEECHHHHHHHHHTC-
T ss_pred chhHHHHHHHHHH------hcCCCCEEEEcCCCChhHHHHH----HHcCCceEEEeccc--ccCCccCHHHHHHHHHhC-
Confidence 9999999998763 1248999999999999876554 44589999886521 122233 88999988642
Q ss_pred cCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc-------ccc-ccccCc-cEEEEcCcc
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI-------KID-VKEIGA-DFYVSNLHK 253 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~-------~~~-~~~~~~-d~~~~s~~K 253 (452)
.++++++++++++||||.++|. ++|+++|+++|+ ++|+|++++.... ++. +...+. ++++.|++|
T Consensus 167 --~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 243 (394)
T 2ay1_A 167 --KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGA-LPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSK 243 (394)
T ss_dssp --CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTT
T ss_pred --CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccC
Confidence 2357888899999999999874 478999999999 8999999986432 121 222233 467889999
Q ss_pred cCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH---HhhcCHHHHHH
Q 012991 254 WFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS---RFEGGIDGIMQ 325 (452)
Q Consensus 254 ~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~~~~g~~~~~~ 325 (452)
+ +|++| +|++++ +++++.. +...... ......+.++...+.++.++++... .+....+.+++
T Consensus 244 ~-~~~~G~riG~~~~~~~~~~~~~~-l~~~~~~--------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~ 313 (394)
T 2ay1_A 244 N-FGIYRERTGCLLALCADAATREL-AQGAMAF--------LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS 313 (394)
T ss_dssp T-TTCGGGCEEEEEEECSSHHHHHH-HHHHHHH--------HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred C-CcCcCCccceEEEEeCCHHHHHH-HHHHHHH--------HHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 6 66666 599887 4543322 1000000 0000012233434444444444220 00124677888
Q ss_pred HHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 326 RNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
+++++++++.+.|.++. ++.+..+.. +.++++.++ ...+.+.|.+ +||.+.
T Consensus 314 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--g~~~~~~~~----------~~~~~~~l~~-~gi~v~------------- 367 (394)
T 2ay1_A 314 GMLRLREQLAGELRDLSGSDRFGFVAEHR--GMFSRLGAT----------PEQVKRIKEE-FGIYMV------------- 367 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTTTHHHHCC--SSEEECCCC----------HHHHHHHHHH-HCEECC-------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCeeEEcCCc--eEEEeeCCC----------HHHHHHHHHh-CCEEec-------------
Confidence 89999999999998874 355543332 556665442 2456666655 599984
Q ss_pred CCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 403 AGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
..+|++++ .++++|+++++++|+++
T Consensus 368 -----------~~~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 368 -----------GDSRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp -----------TTCEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred -----------CCCeEEee-cCCHhhHHHHHHHHHHc
Confidence 13699988 47899999999999876
No 170
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.93 E-value=4.9e-25 Score=215.59 Aligned_cols=333 Identities=12% Similarity=0.052 Sum_probs=208.1
Q ss_pred HHHHHhhhccCCC-CeEEeccCC-CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE
Q 012991 26 EAEIRDEFSHHQH-GVARINNGS-FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISL 103 (452)
Q Consensus 26 ~~~ir~~~~~~~~-~~~~l~~~~-~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~ 103 (452)
...+|+..+..+. +++.++.+. ..+.|+.+.+++..+ . .+ ....+++++.+++++|+++++++++
T Consensus 15 ~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~~~-----~------~~--~~~~~~~~~~~a~~~g~~~~~~~~~ 81 (374)
T 2aeu_A 15 RKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLNTY-----I------GS--SYFAEKVNEYGLKHLGGDENDKCVG 81 (374)
T ss_dssp HHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHTST-----T------HH--HHHHHHHHHHHHHHHTCCTTEEEEE
T ss_pred HHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHHHh-----c------Cc--hHHHHHHHHHHHHHhCCCCcceEEE
Confidence 3456777766666 677776554 557888899988621 0 01 1223567777889999842478999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhc
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEK 183 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~ 183 (452)
++|||+|+..++.+ + +||+|+++.++|++....+. .+...|++++.+ . + +++++++ +
T Consensus 82 ~~ggt~a~~~~~~~---------~-~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v-~----d-----~~~l~~~-~- 138 (374)
T 2aeu_A 82 FNRTSSAILATILA---------L-KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES-D----K-----VGEILNK-I- 138 (374)
T ss_dssp ESSHHHHHHHHHHH---------H-CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE-S----C-----HHHHHTT-C-
T ss_pred EcChHHHHHHHHHh---------C-CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe-C----C-----HHHHHhc-C-
Confidence 99999999999884 3 78999999998877544444 356779998887 2 1 4666654 2
Q ss_pred cccCCCceEE-EEEeccCCCCc-ccccHHHHHHHHHHcCCCEEEEecccccCCc-cc-c--ccccCccEEEEcCcccCcC
Q 012991 184 GKKDGKMIRL-AIIDHITSMPC-VVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-KI-D--VKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 184 ~~~~~~~~~l-v~~~~~~n~tG-~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~-~--~~~~~~d~~~~s~~K~l~g 257 (452)
+++++ |++++++||+| ...++++|.++|++||+ ++|+|++++.+.. +. . ...+++|+++.|+||++.|
T Consensus 139 -----~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g 212 (374)
T 2aeu_A 139 -----DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEA-IVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG 212 (374)
T ss_dssp -----CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTC-CEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred -----CCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCC-EEEEECCcccccccccccCCccccCCcEEEecCcccccC
Confidence 47899 99999999999 88899999999999999 7999999876531 11 1 2234689999999998766
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH---
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKM--- 334 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l--- 334 (452)
+ ++|++++++++++. + .... ..+.++++...+.++.++++. . ..+.+ ++..++++.+
T Consensus 213 ~-~~G~~~~~~~~~~~-l-~~~~-----------~~~~~~~~~~~~~a~~~al~~---~--~~~~~-~~~~~~~~~~~~~ 272 (374)
T 2aeu_A 213 P-RGGLLAGKKELVDK-I-YIEG-----------TKFGLEAQPPLLAGIYRALKN---F--NLERI-RKAFERAKNFDLS 272 (374)
T ss_dssp C-SCEEEEEEHHHHHH-H-HHHH-----------HTTTCBCCHHHHHHHHHHHHH---C--CHHHH-HHHHHHHHHCCCH
T ss_pred c-ceEEEEECHHHHHH-H-HHhh-----------ccccCCCCHHHHHHHHHHHHH---H--hHHHH-HHHHHHHHHHHHH
Confidence 5 57999999887765 1 1110 001122333333333334333 2 22222 2233333333
Q ss_pred -HHHHHH----H---cCCCcCCCcccccceEEE-EcCCccccCChh---hHHHHHHHHhhhcceEeeecccCCCCCCCCC
Q 012991 335 -ARMLAN----A---WGTSLGSPPEICAAMVMV-GLPSRLRVMGED---DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQ 402 (452)
Q Consensus 335 -~~~L~~----~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~ 402 (452)
++.|.+ + .++.+..++. +.+++. ..+ ... +..+++..+.+++||.+.++..+.
T Consensus 273 ~~~~l~~~L~~~~~~~g~~~~~~~~--g~~~~~~~~~------~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~------- 337 (374)
T 2aeu_A 273 KIEKLNKELKAIDDNINIVYERTPT--GFVIKRVYKD------DTINIKKLIEIGFNLLKNYGIITITVAGMP------- 337 (374)
T ss_dssp HHHHHHHHHTTTCTTEEEEEEECSS--EEEEEEEESS------HHHHHHHHHHHHHHHHHHHCEECSTTSSSC-------
T ss_pred HHHHHHHhhhhhhhccCcceeeCCc--eEEEEeeccc------ccccccchHHHHHHHHHhCCEEEecCCCCC-------
Confidence 344433 2 1233222222 333222 222 111 122355444444699987554321
Q ss_pred CCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHHHHhcc
Q 012991 403 AGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 403 ~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~~ 443 (452)
...+++||+++.. .++.+++++.+++++.+++-
T Consensus 338 --------~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 338 --------GASKSLRIDLTSRDAERIDDNYIIKAIVESIKMA 371 (374)
T ss_dssp --------SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHH
T ss_pred --------CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 2346899999742 23345999999999888653
No 171
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.93 E-value=4.1e-25 Score=218.27 Aligned_cols=344 Identities=10% Similarity=0.030 Sum_probs=212.2
Q ss_pred HHHHHhhhccC-CCCeEEeccCCC-C-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC--
Q 012991 26 EAEIRDEFSHH-QHGVARINNGSF-G-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-- 96 (452)
Q Consensus 26 ~~~ir~~~~~~-~~~~~~l~~~~~-~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 96 (452)
+-.+.+.+... .+.++.|..+.+ . +..+.+.+++.+.... ... ..|....+..++|++++++++..
T Consensus 15 i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~---~~~--~~Y~~~~g~~~lr~~ia~~~~~~~~ 89 (401)
T 7aat_A 15 ILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK---KMD--KEYLPIAGLADFTRASAELALGENS 89 (401)
T ss_dssp HHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT---TCC--CCCCCTTCCHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhccc---ccc--cCCCCCCCCHHHHHHHHHHhcCCCc
Confidence 44444455432 344778776664 2 2234577777665432 111 12223344677888888887642
Q ss_pred ---CCCcEEE--ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChH
Q 012991 97 ---DVGEISL--VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEE 171 (452)
Q Consensus 97 ---~~~~i~~--t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~ 171 (452)
++++|++ |+|||+|+.+++.++.. .+++||+|++++|+|.++...+ +..|.+++.+++.. .+++
T Consensus 90 ~~~~~~~i~~v~t~G~~~al~~~~~~l~~-----~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~~~~~~--~~~~ 158 (401)
T 7aat_A 90 EAFKSGRYVTVQGISGTGSLRVGANFLQR-----FFKFSRDVYLPKPSWGNHTPIF----RDAGLQLQAYRYYD--PKTC 158 (401)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHHHHHHHHH-----HCTTCCEEEEEESCCTTHHHHH----HHTTCEEEEEECEE--TTTT
T ss_pred cccccCceEEEecCcchHHHHHHHHHHHH-----hccCCCEEEEcCCCchhHHHHH----HHcCCeeEeeeeec--cccC
Confidence 1578877 99999999998876631 2478999999999999876665 44699999996521 1223
Q ss_pred HH-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCcc-c-----cc--
Q 012991 172 EI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIK-I-----DV-- 239 (452)
Q Consensus 172 ~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~-~-----~~-- 239 (452)
.+ ++.+++.+++. .+++++|++++++||||.+++ +++|+++|++||+ ++|+|+++...... . .+
T Consensus 159 ~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~-~li~Deay~~~~~~~~~~~~~~~~~ 234 (401)
T 7aat_A 159 SLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNL-LAYFDMAYQGFASGDINRDAWALRH 234 (401)
T ss_dssp EECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred ccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc-EEEEccccccccCCCccccHHHHHH
Confidence 34 77777777642 467899999999999999876 6678899999999 79999997643321 1 01
Q ss_pred --cccCccEEEEcCcccCcCCCC--cEEEEEe---cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 240 --KEIGADFYVSNLHKWFFCPPS--VAFLYCR---KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 240 --~~~~~d~~~~s~~K~l~g~~G--~G~l~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
...+..+++.|+||. +|++| +|++++. ++.... +...... ....+...++.. +...+...
T Consensus 235 ~~~~~~~~i~~~S~sK~-~~~~G~RiG~l~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~ 301 (401)
T 7aat_A 235 FIEQGIDVVLSQSYAKN-MGLYGERAGAFTVICRDAEEAKR-VESQLKI--------LIRPMYSNPPMN---GARIASLI 301 (401)
T ss_dssp HHHTTCCCEEEEECTTT-SCCGGGCEEEEEEECSSHHHHHH-HHHHHHH--------HHHHHHSSCCHH---HHHHHHHH
T ss_pred HHhcCCcEEEEecCCcc-cccccCceEEEEEEeCCHHHHHH-HHHHHHH--------HHHhccCCCChH---HHHHHHHH
Confidence 122456788999995 77777 7888863 221111 0000000 000011122221 22222222
Q ss_pred HHH------hhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhh
Q 012991 313 VSR------FEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVR 383 (452)
Q Consensus 313 ~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 383 (452)
+.. +....+.++++++++++++.+.|.++. ++.+..+.. +.++|..+ +.+.+ ..|.++
T Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~-~~ll~~ 368 (401)
T 7aat_A 302 LNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQI--GMFCFTGL----------KPEQV-ERLTKE 368 (401)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCC--SSEEECCC----------CHHHH-HHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCc--ceEEecCC----------CHHHH-HHHHHh
Confidence 210 011356778888999999999998862 233333322 44555333 34445 444445
Q ss_pred cceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 384 FGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 384 ~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
+||.+. +.+|+|++..+++ +|++++++|++++
T Consensus 369 ~gi~v~------------------------~~~Ris~~~~~~~-~i~~~~~~l~~~~ 400 (401)
T 7aat_A 369 FSIYMT------------------------KDGRISVAGVASS-NVGYLAHAIHQVT 400 (401)
T ss_dssp HCEECC------------------------TTCEEEGGGCCTT-THHHHHHHHHHHH
T ss_pred CCEecc------------------------CCCeEEeccCChh-hHHHHHHHHHHHh
Confidence 699983 2379999876554 4999999999876
No 172
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.93 E-value=8.3e-24 Score=208.17 Aligned_cols=340 Identities=9% Similarity=0.039 Sum_probs=218.7
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
....++.+.+++.+.+.... +...+...++++.++++++.+ ++++++|||+|+..++.++.... ...+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~l~~~la~~~~~~---~~i~~~sGt~a~~~al~~~~~~~-~~~~ 77 (390)
T 3b8x_A 10 SSTWDDLEYKAIQSVLDSKM--------FTMGEYVKQYETQFAKTFGSK---YAVMVSSGSTANLLMIAALFFTK-KPRL 77 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHTC--------CSSCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHTTSSS-SCSC
T ss_pred CCCCCHHHHHHHHHHHHcCC--------CCCChHHHHHHHHHHHHHCCC---cEEEECCHHHHHHHHHHHHHhhh-hcCC
Confidence 34566779999888775421 223566899999999999985 67889999999999998762100 0015
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh-HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE-EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~-~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
++|++|+++.++|+++..++. ..|.+++.+++ +.+ +.+ +++|++++ .+++++|++++ ++|.
T Consensus 78 ~~g~~Vi~~~~~~~~~~~~~~----~~g~~~~~~~~----~~~~~~~d~~~l~~~i------~~~~~~v~~~~---~~g~ 140 (390)
T 3b8x_A 78 KKGDEIIVPAVSWSTTYYPLQ----QYGLRVKFVDI----DINTLNIDIESLKEAV------TDSTKAILTVN---LLGN 140 (390)
T ss_dssp CTTCEEEEESSSCHHHHHHHH----HTTCEEEEECB----CTTTCSBCHHHHHHHC------CTTEEEEEEEC---GGGC
T ss_pred CCcCEEEECCCCcHHHHHHHH----HcCCEEEEEec----CccccCcCHHHHHHHh------CcCCeEEEEEC---CccC
Confidence 789999999999999887764 46999999954 322 344 89999999 56899999874 5688
Q ss_pred cccHHHHHHHHHHcCCCEEEEecccccCCccccccccCc--cEEEEcC--cccCcCCCCcEEEEEec-CccccCCCCCce
Q 012991 206 VIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIGA--DFYVSNL--HKWFFCPPSVAFLYCRK-SILSSDMHHPVV 280 (452)
Q Consensus 206 ~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~~--d~~~~s~--~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~ 280 (452)
..|+++|.++|+++|+ ++|+|++|+.|... +....+. |+.++|+ +|.+.++.| |+++.++ ++.+. + .+..
T Consensus 141 ~~~~~~i~~l~~~~~~-~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~-~-~~~~ 215 (390)
T 3b8x_A 141 PNNFDEINKIIGGRDI-ILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHI-L-LCIR 215 (390)
T ss_dssp CCCHHHHHHHHTTSCC-EEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHH-H-HHHT
T ss_pred hhhHHHHHHHHHHcCC-EEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHH-H-HHHH
Confidence 8999999999999999 79999999988765 4444443 6666543 454666666 8888876 44332 0 1110
Q ss_pred eccCC--CC-----------------cccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 281 SHEFG--NG-----------------LPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 281 ~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
. .| .. .+......|......-+....++..+. .++.+.++.+++++++.+.|.++
T Consensus 216 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~----~l~~~~~~~~~~~~~l~~~L~~~ 289 (390)
T 3b8x_A 216 A--HGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLK----KLPRFISVRRKNAEYFLDKFKDH 289 (390)
T ss_dssp B--TTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred h--cCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 11 00 000000012111111111222222333 35667888899999999999887
Q ss_pred cCCCcCCCccccc-ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCC-CCCC--------CC--
Q 012991 342 WGTSLGSPPEICA-AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQA-GARD--------KD-- 409 (452)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~-~~~~--------~~-- 409 (452)
+++++..++.... ..+.+.++.. .+.+..++.+.|.+ .||.++..+.. ..|.. +..+ ..
T Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~l~~~L~~-~gI~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 360 (390)
T 3b8x_A 290 PYLDVQQETGESSWFGFSFIIKKD----SGVIRKQLVENLNS-AGIECRPIVTG----NFLKNTDVLKYFDYTVHNNVDN 360 (390)
T ss_dssp SSEEECCCCSBCCCCEEEEEECTT----SCCCHHHHHHHHHH-TTBCCBCSTTS----SGGGCHHHHTTCEEEESSCCHH
T ss_pred CCcccCCCCCCcccEEEEEEecCc----CcccHHHHHHHHHH-CCCCeeeecCC----chhhcchhhhcCCCCCcCCChH
Confidence 7777655432112 2244444410 13467789999976 59998754321 11222 1100 00
Q ss_pred --CCccceEEecccccCCHHHHHHHHHHH
Q 012991 410 --GIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 410 --~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
....+.||++++..+|++||++++++|
T Consensus 361 ~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 361 AEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 012357999999999999999999886
No 173
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.93 E-value=2.7e-25 Score=220.66 Aligned_cols=339 Identities=15% Similarity=0.106 Sum_probs=212.2
Q ss_pred CCCCcHHHHHHHHHHHHHHh--cCCchh-hh--hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccc
Q 012991 48 FGSCPKSVLADQQKWQLKFL--QQPDDF-YF--NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGF 122 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~--~~~~~~-~~--~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~ 122 (452)
.++.|+.|.+++.+.+.... ++++.. +. .......+.++++++++++++ ++.+++ ++|++|+..++.++
T Consensus 39 ~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~v~~-~sGs~a~~~a~~~~---- 112 (420)
T 3gbx_A 39 ENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD-YANVQP-HSGSQANFAVYTAL---- 112 (420)
T ss_dssp CCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCS-EEECCC-SSHHHHHHHHHHHH----
T ss_pred CCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCC-CceeEe-cCcHHHHHHHHHHh----
Confidence 33467889999987763211 222221 11 122344566789999999995 455544 55689999998876
Q ss_pred ccCCCCCCCEEEEeCCcchhHHHHHHHH-HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccC
Q 012991 123 TEGRFHRNDTVLMLHCAFQAVKKSIQAY-VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 123 ~~~~~~~g~~Vl~~~~~~~s~~~~~~~~-a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
+++||+|+++.++|.++......+ ....+..+..++. +.++.+ +++|++++++ .++++|++++++
T Consensus 113 ----~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~d~~~l~~~i~~-----~~~~~v~~~~~~ 179 (420)
T 3gbx_A 113 ----LQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGI----DESGKIDYDEMAKLAKE-----HKPKMIIGGFSA 179 (420)
T ss_dssp ----CCTTCEEEEEEEC------------CHHHHSEEEEEEE----CTTCSCCHHHHHHHHHH-----HCCSEEEECCTT
T ss_pred ----cCCCCEEEecchhhcceeccchhhhhcccceeEEeccC----CccCCcCHHHHHHHHHh-----cCCeEEEEecCc
Confidence 589999999999998854222211 1112344444432 233334 8999999953 358999998877
Q ss_pred CCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCCCcEEEEEec---Cccc
Q 012991 201 SMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRK---SILS 272 (452)
Q Consensus 201 n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~---~~~~ 272 (452)
|+ ...|+++|.++|++||+ ++|+|++|+.|.. +.... .+|++++|+||+++||.| |+++.++ ++..
T Consensus 180 ~~--~~~~l~~l~~l~~~~~~-~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~ 253 (420)
T 3gbx_A 180 YS--GVVDWAKMREIADSIGA-YLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYK 253 (420)
T ss_dssp CC--SCCCHHHHHHHHHHTTC-EEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHH
T ss_pred cC--CccCHHHHHHHHHHcCC-EEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHH
Confidence 64 57899999999999999 8999999876543 22222 379999999999778887 8988887 3433
Q ss_pred cCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCccc
Q 012991 273 SDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEI 352 (452)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 352 (452)
. + .... +.. ..++++...+.++..++..... .+++.+++++.++++++.+.|.+. ++++..+. .
T Consensus 254 ~-~-~~~~---~~~-------~~~~~~~~~~~a~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~ 317 (420)
T 3gbx_A 254 K-L-NSAV---FPS-------AQGGPLMHVIAGKAVALKEAME--PEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGG-T 317 (420)
T ss_dssp H-H-HHHH---C-----------CCCCHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS-C
T ss_pred H-h-hhhc---CCC-------CCCCcchhHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCC-C
Confidence 2 1 1100 000 0133444344444444433321 256788899999999999999884 77765432 2
Q ss_pred ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC----CHHH
Q 012991 353 CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN----TLED 428 (452)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~----t~~d 428 (452)
.++++++.++. .+.+...+.+.|.+ +||.+.....+...+. ...++.+|++++..+ ++++
T Consensus 318 ~~~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~----------~~~~~~iRi~~~~~~~~~~~~~~ 381 (420)
T 3gbx_A 318 ENHLFLLDLVD-----KNLTGKEADAALGR-ANITVNKNSVPNDPKS----------PFVTSGIRIGSPAVTRRGFKEAE 381 (420)
T ss_dssp SSSEEEEECGG-----GTCCHHHHHHHHHH-TTEECEEECCTTCSSC----------TTTCSEEEEECHHHHHTTCCHHH
T ss_pred CCeEEEEEcCC-----CCCCHHHHHHHHHH-CCcEeccccCCCCccc----------cCCCcceEEecchhcccCCCHHH
Confidence 26677777641 23466778888865 5999876332211100 122346999987653 4899
Q ss_pred HHHHHHHHHHHHhcc
Q 012991 429 YEKFRDAVILLVEEG 443 (452)
Q Consensus 429 i~~l~~~l~~~~~~~ 443 (452)
+++++++|+++++..
T Consensus 382 i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 382 VKELAGWMCDVLDNI 396 (420)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999998764
No 174
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.88 E-value=1.1e-27 Score=236.02 Aligned_cols=336 Identities=12% Similarity=0.052 Sum_probs=225.6
Q ss_pred CeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C--CCCCCcEEEecChhHHH
Q 012991 39 GVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N--ADDVGEISLVDNATTAA 111 (452)
Q Consensus 39 ~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~i~~t~g~t~a~ 111 (452)
.++.|..+.++ ..|+.+.+++.+.+... ...|... ..++++.+++++ | .+ +++|++|+|+++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~y~~~----~~~l~~~la~~l~~~~g~~~~-~~~v~~~~g~~~a~ 102 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL----VYGYTYA----SDELLQAVLDWEKSEHQYSFD-KEDIVFVEGVVPAI 102 (392)
Confidence 67788777665 45666888888776431 1112211 455666666654 5 33 67999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++ .++|++|+++.+.|++....+. ..|.+++.++.... +....+ ++++++.++ ..+
T Consensus 103 ~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~-~g~~~~d~~~l~~~l~-----~~~ 164 (392)
T 3b1d_A 103 SIAIQAF--------TKEGEAVLINSPVYPPFARSVR----LNNRKLVSNSLKEE-NGLFQIDFEQLENDIV-----END 164 (392)
Confidence 9999876 4789999999999998766553 45888888754210 011224 788888884 257
Q ss_pred eEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc----ccccc---c--cCccEEEEcCcccCcCC
Q 012991 191 IRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI----KIDVK---E--IGADFYVSNLHKWFFCP 258 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~----~~~~~---~--~~~d~~~~s~~K~l~g~ 258 (452)
+++|++++++||||.++| +++|+++|++||+ ++|+|++++.... ...+. . .+.++++.|++|++ |.
T Consensus 165 ~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~ 242 (392)
T 3b1d_A 165 VKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHV-ILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTF-NI 242 (392)
Confidence 889999999999999987 7889999999999 7999999876332 11221 1 34568889999974 43
Q ss_pred CC--cEEEEEecC-ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 012991 259 PS--VAFLYCRKS-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMA 335 (452)
Q Consensus 259 ~G--~G~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~ 335 (452)
+| +|+++++++ +++. + ..... ....++++...+.+..++++.... .++.++++++++++++.
T Consensus 243 ~G~r~G~~~~~~~~~~~~-~-~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~l~ 307 (392)
T 3b1d_A 243 AGTKNSYAIIENPTLCAQ-F-KHQQL----------VNNHHEVSSLGYIATETAYRYGKP---WLVALKAVLEENIQFAV 307 (392)
Confidence 44 788888654 6654 2 11100 000123344444444445543222 46777888889999999
Q ss_pred HHHHH-HcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 336 RMLAN-AWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 336 ~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
+.|.+ ++++.+..+.. +.++|+.++. .+.+..++.+.|.+++||.+.++..+.. ..++
T Consensus 308 ~~l~~~~~~~~~~~~~~--~~~~~i~~~~-----~~~~~~~l~~~l~~~~gi~v~~g~~f~~--------------~~~~ 366 (392)
T 3b1d_A 308 EYFAQEAPRLKVMKPQG--TYLIWLDFSD-----YGLTDDALFTLLHDQAKVILNRGSDYGS--------------EGEL 366 (392)
Confidence 99987 66777655543 4455676651 1245667888886446999976554421 2357
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
++|+++.. +++++++++++|+++++
T Consensus 367 ~iRi~~~~--~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 367 HARLNIAA--PKSLVEEICKRIVCCLP 391 (392)
Confidence 89999875 67889999999988764
No 175
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.93 E-value=3.4e-25 Score=220.37 Aligned_cols=348 Identities=16% Similarity=0.109 Sum_probs=213.3
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCchh-hh-hh-hhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFL--QQPDDF-YF-NS-LRKGILESRAAVKDLINADDVGEISLVDNATTAAAIV 114 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~~-~~-~~-~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~ 114 (452)
.+.|.. +..+.|+.|.+++.+.+.... +++... +. .. .....+.+++.++++++.+ ...++++||++|+..+
T Consensus 34 ~i~l~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~v~~~~Gs~a~~~a 110 (425)
T 3ecd_A 34 QVELIA-SENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAG--HANVQPHSGAQANGAV 110 (425)
T ss_dssp SEECCT-TCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHH
T ss_pred ceeeec-ccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCC--CceeecCchHHHHHHH
Confidence 455543 334458889999987663211 112111 11 11 1233455668899999985 3335689999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc--EEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 115 LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG--SVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 115 ~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~--~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
+.++ +++||+|+++.++|+++...... ....|. ++..++. .. +.+.+ +++|++++++ +++
T Consensus 111 l~~~--------~~~gd~Vi~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~--~~-~~~~~d~~~l~~~i~~-----~~~ 173 (425)
T 3ecd_A 111 MLAL--------AKPGDTVLGMSLDAGGHLTHGAK-PALSGKWFNALQYGV--SR-DTMLIDYDQVEALAQQ-----HKP 173 (425)
T ss_dssp HHHH--------CCTTCEEEEECC-------------------CEEEEECC--CT-TTSSCCHHHHHHHHHH-----HCC
T ss_pred HHHc--------cCCCCEEEEcccccccceecchh-hhhcccceeeeecCC--Cc-ccCccCHHHHHHHHhh-----cCC
Confidence 9876 58999999999999883322211 112344 4445532 11 12333 8999999852 468
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcccc--ccc-cCccEEEEcCcccCcCCCCcEEEEEec
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKID--VKE-IGADFYVSNLHKWFFCPPSVAFLYCRK 268 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~--~~~-~~~d~~~~s~~K~l~g~~G~G~l~~~~ 268 (452)
++|++++++| |...++++|.++|++||+ ++|+|++|+.|....+ ... ..+|++++|+||++.|+.| |+++.++
T Consensus 174 ~~v~~~~~~~--~~~~~l~~i~~l~~~~~~-~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-g~~~~~~ 249 (425)
T 3ecd_A 174 SLIIAGFSAY--PRKLDFARFRAIADSVGA-KLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRG-GFVLTND 249 (425)
T ss_dssp SEEEEECSCC--CSCCCHHHHHHHHHHHTC-EEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEESC
T ss_pred cEEEEccccC--CCcCCHHHHHHHHHHcCC-EEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCc-EEEEeCC
Confidence 8999998777 678899999999999999 7999999876543211 111 1378999999999877775 8888875
Q ss_pred C-ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 012991 269 S-ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG 347 (452)
Q Consensus 269 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 347 (452)
+ +... + .... +. ...++++...+.++..++..... .+++.+.++.+++++++.+.|.+. ++++.
T Consensus 250 ~~~~~~-~-~~~~---~~-------~~~~~~~~~~~~a~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 314 (425)
T 3ecd_A 250 EEIAKK-I-NSAV---FP-------GLQGGPLMHVIAGKAVAFGEALT--DDFKTYIDRVLANAQALGDVLKAG-GVDLV 314 (425)
T ss_dssp HHHHHH-H-HHHH---C------------CCCHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHHHT-TCEEG
T ss_pred HHHHHH-H-Hhhh---Cc-------cccCCccHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhC-CCeec
Confidence 3 3332 1 1110 00 01123444344444444433321 256788899999999999999885 77665
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCC--
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNT-- 425 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t-- 425 (452)
.+.. .++++++.++. .+.+...+.+.|.+ +||.+..+..+..... ....+++|++++..++
T Consensus 315 ~~~~-~~~~~~~~~~~-----~~~~~~~~~~~l~~-~gi~v~~~~~p~~~~~----------~~~~~~iRi~~~~~~~~~ 377 (425)
T 3ecd_A 315 TGGT-DNHLLLVDLRP-----KGLKGAQVEQALER-AGITCNKNGIPFDPEK----------PTITSGIRLGTPAGTTRG 377 (425)
T ss_dssp GGSC-SSSEEEEECGG-----GTCCHHHHHHHHHH-TTEECEECCCTTCSSC----------TTTCSEEEEESHHHHHTT
T ss_pred cCCC-CceEEEEEeCC-----CCCCHHHHHHHHHH-cCCEecccccCCCCCC----------CCCccceeccchhheecc
Confidence 4332 26678877752 13466778888865 5999975443211000 1234689999665544
Q ss_pred --HHHHHHHHHHHHHHHhcc
Q 012991 426 --LEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 426 --~~di~~l~~~l~~~~~~~ 443 (452)
++++++++++|+++++..
T Consensus 378 ~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 378 FGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 899999999999998753
No 176
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.93 E-value=1.4e-24 Score=215.80 Aligned_cols=335 Identities=13% Similarity=0.057 Sum_probs=215.3
Q ss_pred CCCeEEeccCC------CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCC--cEEE
Q 012991 37 QHGVARINNGS------FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVG--EISL 103 (452)
Q Consensus 37 ~~~~~~l~~~~------~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~--~i~~ 103 (452)
.++++.|..|. ..+.++.|.+++.+.+... .. ..|....+..++++.++++++.. +++ +|++
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~---~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 122 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAG---LP--RGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQ 122 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTC---CC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccC---CC--CCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEE
Confidence 45788888772 2244488999998877531 11 12333445677888888877432 146 8999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+|||+|+.+++..+. .+++||+|++++|.|.+....+ +..|.+++.++... ++++.+ ++.+++.++
T Consensus 123 t~G~t~al~~~~~~~~------~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~ 190 (420)
T 4f4e_A 123 ALGGTGALKIGADFLR------TLNPKAKVAISDPSWENHRALF----DMAGFEVVAYPYYD--AKTNGVNFDGMLAALN 190 (420)
T ss_dssp EEHHHHHHHHHHHHHH------HHCTTCCEEEEESCCHHHHHHH----HHTTCCEEEEECEE--TTTTEECHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHH------HhCCCCEEEEeCCCcHhHHHHH----HHcCCeEEEeeeec--cccCccCHHHHHHHHH
Confidence 9999999999954321 2489999999999999875555 44699999996521 122333 899999995
Q ss_pred ccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCccc-----c---c-cccCccEEEEc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSIKI-----D---V-KEIGADFYVSN 250 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~~~-----~---~-~~~~~d~~~~s 250 (452)
+. .++++++++++++||||.+++ +++|+++|++||+ ++|+|++++...... . + ...+.++++.|
T Consensus 191 ~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 266 (420)
T 4f4e_A 191 GY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRL-VPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSS 266 (420)
T ss_dssp TC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEE
T ss_pred hC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCc-EEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEe
Confidence 42 367899999999999999987 5578889999999 899999986543221 1 1 12245688899
Q ss_pred CcccCcCCCC--cEEEEEe---cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH---HhhcCHHH
Q 012991 251 LHKWFFCPPS--VAFLYCR---KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS---RFEGGIDG 322 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~~~~g~~~ 322 (452)
++|. +|++| +|++++. ++++.. +...... ........++...+.++..++.... .+....+.
T Consensus 267 ~SK~-~~~~G~RiG~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 336 (420)
T 4f4e_A 267 FSKS-FSLYGERVGALSIITDSKDEAAR-VLSQLKR--------VIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGE 336 (420)
T ss_dssp CTTT-TTCGGGCEEEEEEECSSHHHHHH-HHHHHHH--------HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCcc-CcCcCCCcEEEEEEcCCHHHHHH-HHHHHHH--------HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9996 77777 7887652 232221 0000000 0000012233333333333332210 00113677
Q ss_pred HHHHHHHHHHHHHHHHHHH---cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANA---WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
++++++++++++.+.|.++ .++.+..+.. +.++|+.+ +...+.+.|.+ +||.+..
T Consensus 337 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--g~~~~~~~----------~~~~~~~~l~~-~gI~v~~--------- 394 (420)
T 4f4e_A 337 MRDRIRAMRNGLVERLKAAGIERDFSFINAQR--GMFSYSGL----------TSAQVDRLREE-FGIYAVS--------- 394 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSC--SSEEECCC----------CHHHHHHHHHH-HCEECCT---------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeECCCc--cEEEEeCC----------CHHHHHHHHHh-CCEEecC---------
Confidence 8889999999999999887 3555443333 55555433 34556666655 5999841
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..|+|++.. +.++|++++++|++++
T Consensus 395 ---------------~~Ris~~~~-~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 395 ---------------TGRICVAAL-NTRNLDVVANAIAAVL 419 (420)
T ss_dssp ---------------TSEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred ---------------CCeEEEecC-CHHHHHHHHHHHHHHh
Confidence 129998754 5677999999999876
No 177
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.93 E-value=8.9e-24 Score=208.28 Aligned_cols=325 Identities=10% Similarity=0.062 Sum_probs=215.3
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|..++.+.+++.+.+.... .. +.....+..++++++++++++. +++++|+||++|+..++.++.....+. -
T Consensus 50 lG~~~p~v~~a~~~~~~~~~-~~---~~~~~~~~~~~l~~~la~~~~~---~~v~~~~gg~ea~~~al~~~~~~~~~~-g 121 (395)
T 3nx3_A 50 LGYNHAKFNAKIKAQVDKLL-HT---SNLYYNENIAAAAKNLAKASAL---ERVFFTNSGTESIEGAMKTARKYAFNK-G 121 (395)
T ss_dssp TCBSCHHHHHHHHHHHTTCS-CC---CTTSBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHT-T
T ss_pred CCCCCHHHHHHHHHHHHhcc-cc---ccccCCHHHHHHHHHHHHhcCC---CeEEEeCCHHHHHHHHHHHHHHHhhcc-C
Confidence 45567889999988775421 11 1122456788999999999974 699999999999999998763211000 0
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHH---------HhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEec
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYV---------TRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDH 198 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a---------~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~ 198 (452)
.++++|++.++.|++.......+. ...+..+..+ +.++ +++|++++ .+++++|++++
T Consensus 122 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l------~~~~~~v~~~~ 187 (395)
T 3nx3_A 122 VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFA----KYND----ISSVEKLV------NEKTCAIILES 187 (395)
T ss_dssp CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEE----CTTC----HHHHHTTC------CTTEEEEEEES
T ss_pred CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEe----CCCC----HHHHHHhc------cCCeEEEEEeC
Confidence 457899999999887543322110 0112455566 3333 78899888 57899999999
Q ss_pred cCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCCCcEEEEEecC
Q 012991 199 ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKS 269 (452)
Q Consensus 199 ~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~ 269 (452)
+++++|.+.+ +++|.++|++||+ ++|+|++|+ +|... .+.....+|++++| |++.++.++|+++++++
T Consensus 188 ~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~~ 264 (395)
T 3nx3_A 188 VQGEGGINPANKDFYKALRKLCDEKDI-LLIADEIQCGMGRSGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVINQK 264 (395)
T ss_dssp EECTTSCEECCHHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEECHH
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEecccCCCcCCcchhHHhcCCCCCEEEec--ccccCCCceEEEEEchh
Confidence 9999999987 9999999999999 899999987 43221 22223346777654 88766556899999988
Q ss_pred c-cccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCcC
Q 012991 270 I-LSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSLG 347 (452)
Q Consensus 270 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~ 347 (452)
+ .+. + .+.. .+. +.+.+...+.+..++++.+.. +.+.++.+++.+++++.|.++.. ....
T Consensus 265 ~~~~~-~-~~~~---~~~--------~~~~~~~~~~aa~aal~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (395)
T 3nx3_A 265 VASNS-L-EAGD---HGS--------TYGGNPLVCAGVNAVFEIFKE-----EKILENVNKLTPYLEQSLDELINEFDFC 326 (395)
T ss_dssp HHHHH-S-CTTC---CSS--------CBSCCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred hhhhh-c-CCcc---cCC--------CCCCCHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7 554 2 2210 000 012233334444445554432 34456666777777777765421 1111
Q ss_pred CCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHH
Q 012991 348 SPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 427 (452)
......+.++++.++ ...+..++.+.|.++ ||.+..+. ++++|++++..+|++
T Consensus 327 ~~~~~~g~~~~~~~~------~~~~~~~~~~~l~~~-Gi~v~~~~--------------------~~~iRi~~~~~~t~e 379 (395)
T 3nx3_A 327 KKRKGLGFMQGLSLD------KSVKVAKVIQKCQEN-ALLLISCG--------------------ENDLRFLPPLILQKE 379 (395)
T ss_dssp EEEEEETTEEEEEEC------TTSCHHHHHHHHHHT-TEECEEET--------------------TTEEEECCCTTCCHH
T ss_pred EEEEeEEEEEEEEeC------CcchHHHHHHHHHHC-CCEEecCC--------------------CCEEEEECCCCCCHH
Confidence 111223678888876 233567888888775 99986431 369999999889999
Q ss_pred HHHHHHHHHHHHHhc
Q 012991 428 DYEKFRDAVILLVEE 442 (452)
Q Consensus 428 di~~l~~~l~~~~~~ 442 (452)
|+++++++|++++++
T Consensus 380 ~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 380 HIDEMSEKLRKALKS 394 (395)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998863
No 178
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.93 E-value=8.8e-24 Score=211.13 Aligned_cols=324 Identities=11% Similarity=0.143 Sum_probs=216.2
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcc-cccCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRG-FTEGRF 127 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~-~~~~~~ 127 (452)
+..++.+.+++.+.+.... ..+..+ ..+...++++.++++++. +++++++||++|+..++.++... +.+...
T Consensus 91 gh~~p~v~~Ai~~~~~~~~-~~~~~~---~~~~~~~l~~~la~~~g~---~~v~~~~sGseA~~~al~~~~~~~~~~~g~ 163 (439)
T 2oat_A 91 GHCHPKIVNALKSQVDKLT-LTSRAF---YNNVLGEYEEYITKLFNY---HKVLPMNTGVEAGETACKLARKWGYTVKGI 163 (439)
T ss_dssp CBTCHHHHHHHHHHHTTCS-CCCTTS---EESSHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhcC-cccCcc---CCHHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence 3367789999988875421 111111 245578899999999974 68999999999999999876310 000012
Q ss_pred CCC-CEEEEeCCcchhHHHHHHHHHHhcC------------cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEE
Q 012991 128 HRN-DTVLMLHCAFQAVKKSIQAYVTRAG------------GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 128 ~~g-~~Vl~~~~~~~s~~~~~~~~a~~~g------------~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
.+| ++|++.++.|++....... ..| ..+..+ +.++ +++|++.++ .+++++|
T Consensus 164 ~~g~~~vi~~~~~yhg~~~~~~~---~~g~~~~~~~~~p~~~~v~~~----~~~d----~~~le~~l~-----~~~~~~v 227 (439)
T 2oat_A 164 QKYKAKIVFAAGNFWGRTLSAIS---SSTDPTSYDGFGPFMPGFDII----PYND----LPALERALQ-----DPNVAAF 227 (439)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHT---TCCCHHHHTTSCSCCTTEEEE----CSSC----HHHHHHHTT-----STTEEEE
T ss_pred CCCCCeEEEEcCCCCCCCHhHhh---cCCChhcccCCCCCCCCeEEe----CCCC----HHHHHHHhC-----CCCEEEE
Confidence 356 8999999988775433321 112 355566 3332 688998884 2578999
Q ss_pred EEeccCCCCcccc----cHHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEEE
Q 012991 195 IIDHITSMPCVVI----PVRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAFL 264 (452)
Q Consensus 195 ~~~~~~n~tG~~~----~l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~l 264 (452)
+++..++++|.+. ++++|.++|++||+ ++|+|++|+ +|... .+.....+|++ |++|+++++ ..+|++
T Consensus 228 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~gi-llI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G~v 304 (439)
T 2oat_A 228 MVEPIQGEAGVVVPDPGYLMGVRELCTRHQV-LFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVSAV 304 (439)
T ss_dssp EECSSBTTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEE
T ss_pred EEECCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccCCCCCeEEE
Confidence 9988888899876 69999999999999 899999995 32211 12223357877 556987664 347999
Q ss_pred EEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012991 265 YCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGT 344 (452)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (452)
++++++++. + .+.. .+ . +.+.+.....+..++++.+.+ +.+.++++++.+++.+.|.++ ++
T Consensus 305 ~~~~~~~~~-l-~~~~---~~------~--t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~l-~~ 365 (439)
T 2oat_A 305 LCDDDIMLT-I-KPGE---HG------S--TYGGNPLGCRVAIAALEVLEE-----ENLAENADKLGIILRNELMKL-PS 365 (439)
T ss_dssp EECHHHHTT-S-CTTS---SC------C--SSTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHTTS-CT
T ss_pred EECHHHHhc-c-CCCC---cc------c--CCCcCHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHh-cC
Confidence 999887765 2 2110 00 0 012233344444456665553 246778889999999999876 44
Q ss_pred CcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccC
Q 012991 345 SLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYN 424 (452)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 424 (452)
.+.......+.++++.+++. .+.+..++.+.|.++ ||.+... .++++|++++..+
T Consensus 366 ~~~~~~~~~g~~~~v~l~~~----~~~~~~~l~~~l~~~-Gv~v~~~--------------------~~~~iRi~~~~~~ 420 (439)
T 2oat_A 366 DVVTAVRGKGLLNAIVIKET----KDWDAWKVCLRLRDN-GLLAKPT--------------------HGDIIRFAPPLVI 420 (439)
T ss_dssp TTEEEEEEETTEEEEEECCC----SSCCHHHHHHHHHHT-TEECCBS--------------------SSSEEEECCCTTC
T ss_pred CCcEEEEeeeeEEEEEEecC----ccHHHHHHHHHHHHC-CeEEecC--------------------CCCEEEEECccCC
Confidence 33222223467888887621 013467899999775 9998531 1468999998888
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 012991 425 TLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 425 t~~di~~l~~~l~~~~~~ 442 (452)
|++|+++++++|++++++
T Consensus 421 t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 421 KEDELRESIEIINKTILS 438 (439)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999998753
No 179
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.93 E-value=5.1e-24 Score=210.67 Aligned_cols=326 Identities=13% Similarity=0.072 Sum_probs=215.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.+..++.+.+++.+.+......+ . ....+...+++++++++++. +++++|+|||+|+.+++.++...+.. .-
T Consensus 53 lg~~~p~v~~a~~~~~~~~~~~~-~---~~~~~~~~~l~~~la~~~~~---~~v~~~~gg~~a~~~al~~~~~~~~~-~~ 124 (406)
T 4adb_A 53 LGHAHPELREALNEQASKFWHTG-N---GYTNEPVLRLAKKLIDATFA---DRVFFCNSGAEANEAALKLARKFAHD-RY 124 (406)
T ss_dssp TCBTCHHHHHHHHHHHTTCSCCC-T---TSCCHHHHHHHHHHHHHSSC---SEEEEESSHHHHHHHHHHHHHHHHHH-HT
T ss_pred cCCCCHHHHHHHHHHHHhccccc-C---CcCCHHHHHHHHHHHhhCCC---CeEEEeCcHHHHHHHHHHHHHHHHHh-cC
Confidence 34557779999988765421111 1 11345678999999999987 49999999999999999876310000 00
Q ss_pred CCC-CEEEEeCCcchhHHHHHHHHHHhc---------CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEe
Q 012991 128 HRN-DTVLMLHCAFQAVKKSIQAYVTRA---------GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIID 197 (452)
Q Consensus 128 ~~g-~~Vl~~~~~~~s~~~~~~~~a~~~---------g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~ 197 (452)
.+| ++|++.++.|++.......+.... +..+..+ +..+ +++|++++ .+++++|+++
T Consensus 125 ~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~l~~~l------~~~~~~v~~~ 190 (406)
T 4adb_A 125 GSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHA----AYND----INSASALI------DDSTCAVIVE 190 (406)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEE----CTTC----HHHHHTTC------STTEEEEEEC
T ss_pred CCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEe----CCCc----HHHHHHHh------cCCeEEEEEe
Confidence 144 899999999988755543321100 1244455 2222 78888888 5789999999
Q ss_pred ccCCCCcccc-----cHHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 198 HITSMPCVVI-----PVRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 198 ~~~n~tG~~~-----~l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
|+|++|.++ ++++|.++|++||+ ++|+|++|+ ++.. ..+.....+|++++ +|+++++..+|+++++
T Consensus 191 -p~np~g~~~~~~~~~l~~l~~l~~~~~~-~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~~~~ 266 (406)
T 4adb_A 191 -PIQGEGGVVPASNAFLQGLRELCNRHNA-LLIFDEVQTGVGRTGELYAYMHYGVTPDLLTT--AKALGGGFPVGALLAT 266 (406)
T ss_dssp -SEETTTTSEECCHHHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEEC
T ss_pred -CCcCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCccchhHHHHhcCCCCCEEEe--chhhcCCCCeEEEEEc
Confidence 889998765 58899999999999 899999996 3221 11222335687754 8986643348999999
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCc
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSL 346 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~ 346 (452)
+++++. + .+.. .+ ...+.+...+.+..++++.+. .+.+.++++++++++.+.|.++.. +..
T Consensus 267 ~~~~~~-~-~~~~---~~--------~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 328 (406)
T 4adb_A 267 EECARV-M-TVGT---HG--------TTYGGNPLASAVAGKVLELIN-----TPEMLNGVKQRHDWFVERLNTINHRYGL 328 (406)
T ss_dssp HHHHHT-C-CTTS---SC--------CSSTTCHHHHHHHHHHHHHHS-----SHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhh-h-ccCC---cC--------CCCCCCHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888765 2 2210 00 011233333333444444332 267788889999999999987632 112
Q ss_pred CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCH
Q 012991 347 GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTL 426 (452)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 426 (452)
.......+.++++.++.. ...+..++.+.|.++ ||.+..+ .++++|++++..+|+
T Consensus 329 ~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~l~~~-gi~v~~~--------------------~~~~iRi~~~~~~~~ 383 (406)
T 4adb_A 329 FSEVRGLGLLIGCVLNAD----YAGQAKQISQEAAKA-GVMVLIA--------------------GGNVVRFAPALNVSE 383 (406)
T ss_dssp EEEEEEETTEEEEEECTT----TTTCHHHHHHHHHHT-TEECEES--------------------STTEEEECCCTTCCH
T ss_pred ceEEEEEEEEEEEEEeCC----cHHHHHHHHHHHHHC-CcEEeec--------------------CCCeEEEECCCCCCH
Confidence 111222367888888621 012567899999775 9998642 146999999888999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012991 427 EDYEKFRDAVILLVEE 442 (452)
Q Consensus 427 ~di~~l~~~l~~~~~~ 442 (452)
+|+++++++|++++++
T Consensus 384 e~i~~~~~~l~~~l~~ 399 (406)
T 4adb_A 384 EEVTTGLDRFAAACEH 399 (406)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999865
No 180
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.93 E-value=9.7e-24 Score=210.89 Aligned_cols=356 Identities=10% Similarity=0.050 Sum_probs=219.8
Q ss_pred CCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHH
Q 012991 38 HGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQ 117 (452)
Q Consensus 38 ~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~ 117 (452)
+.++.+.. ...++.+.+++.+.+.... +.......++++.+++++|.+ ++++++|||+|+.+++.+
T Consensus 31 ~~~i~~~~---~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~l~~~la~~~g~~---~~i~~~sGt~a~~~al~~ 96 (437)
T 3bb8_A 31 KSVVPPSG---KVIGTKELQLMVEASLDGW--------LTTGRFNDAFEKKLGEYLGVP---YVLTTTSGSSANLLALTA 96 (437)
T ss_dssp TSCBCSCC---CCCCHHHHHHHHHHHHHCC--------CBSCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHH
T ss_pred CccccCCC---CCCCHHHHHHHHHHHHcCC--------cCCChHHHHHHHHHHHHHCCC---cEEEeCCHHHHHHHHHHH
Confidence 34555532 2334568888877764311 122346899999999999985 688999999999999998
Q ss_pred hhccc-ccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEE
Q 012991 118 IGRGF-TEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAI 195 (452)
Q Consensus 118 l~~~~-~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~ 195 (452)
+.... .+..+++|++|+++.++|+++..++. ..|.+++.++++. +++.+ ++++++++ ++++++|+
T Consensus 97 l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~----~~g~~~~~v~~~~---~~~~~d~~~l~~~i------~~~~~~v~ 163 (437)
T 3bb8_A 97 LTSPKLGVRALKPGDEVITVAAGFPTTVNPTI----QNGLIPVFVDVDI---PTYNVNASLIEAAV------SDKTKAIM 163 (437)
T ss_dssp TTCGGGGGGSCCTTCEEEECSSSCHHHHHHHH----HTTCEEEECCEET---TTTEECGGGHHHHC------CTTEEEEE
T ss_pred hhhcccccccCCCcCEEEECCCCcHHHHHHHH----HcCCEEEEEeccC---ccCCcCHHHHHHhc------CCCCeEEE
Confidence 72100 00015789999999999999877764 3699999885421 12334 78899988 56899999
Q ss_pred EeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCccccccccC--ccEEEEcC--cccCcCCCCcEEEEEecCcc
Q 012991 196 IDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIKIDVKEIG--ADFYVSNL--HKWFFCPPSVAFLYCRKSIL 271 (452)
Q Consensus 196 ~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~~~~~~~~--~d~~~~s~--~K~l~g~~G~G~l~~~~~~~ 271 (452)
+++ ++|...|+++|.++|+++|+ ++|+|++|+.|... +...++ +|+++.|+ .|.+.++. .|+++.+++.+
T Consensus 164 ~~~---~~g~~~~~~~i~~l~~~~~~-~li~D~a~~~g~~~-~~~~~~~~~d~~~~s~~~~k~l~~g~-gg~~~~~~~~~ 237 (437)
T 3bb8_A 164 IAH---TLGNLFDLAEVRRVADKYNL-WLIEDCCDALGSTY-DGKMAGTFGDIGTVSFYPAKHITMGE-GGAVFTQSAEL 237 (437)
T ss_dssp EEC---GGGCCCCHHHHHHHHHHHTC-EEEEECTTCTTCEE-TTEETTSSSSEEEEECSTTSSSCCSS-CEEEEESCHHH
T ss_pred EeC---CCCChhcHHHHHHHHHHcCC-EEEEECccccCceE-CCeecccccCEEEEECcCCcCCCCCC-eEEEEeCCHHH
Confidence 986 35777999999999999999 89999999988765 444444 78877775 34455555 48888776554
Q ss_pred ccCCCCCceeccCC-------------------CCcccccccccccC---c---cccccHHHHHHHHHHhhcCHHHHHHH
Q 012991 272 SSDMHHPVVSHEFG-------------------NGLPIESAWIGTRD---Y---SAQLVIPSAVTFVSRFEGGIDGIMQR 326 (452)
Q Consensus 272 ~~~l~~~~~~~~~~-------------------~~~~~~~~~~~~~~---~---~~~~~~~~al~~~~~~~~g~~~~~~~ 326 (452)
.. +......+..+ ...+......+++. + ..-++...++..+.. ++...++
T Consensus 238 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~----~~~~~~~ 312 (437)
T 3bb8_A 238 KS-IIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLER----IEEFVEK 312 (437)
T ss_dssp HH-HHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHH----HHHHHHH
T ss_pred HH-HHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHH----HHHHHHH
Confidence 32 10000000000 00000000111110 0 011112223333332 3445556
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCc--ccc-c--c-eEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCC
Q 012991 327 NHEQALKMARMLANAWGTSLGSPP--EIC-A--A-MVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQ 400 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~~~~~~~~~--~~~-~--~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~ 400 (452)
.+++.+++.+.|.+++++.+.... ... + . ++.+..+ .+.+..++.+.|.++ ||.++.++.+.-.
T Consensus 313 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~L~~~-GI~v~~~~~~~~~--- 382 (437)
T 3bb8_A 313 RKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKED------SGVSRIDLVKFLDEA-KVGTRLLFAGNLT--- 382 (437)
T ss_dssp HHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGG------GSSCHHHHHHHHHHT-TBCCBCCTTSSGG---
T ss_pred HHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCc------CcCcHHHHHHHHHHC-CCceeccCCcccc---
Confidence 688889999999887665543211 111 1 1 2334332 134677899999775 9999765432100
Q ss_pred CCCCCCC--------CC----CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 401 PQAGARD--------KD----GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 401 ~~~~~~~--------~~----~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+... .. ....+.+|++++..+|.+||++++++|+++++.
T Consensus 383 -~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~~ 435 (437)
T 3bb8_A 383 -RQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFGL 435 (437)
T ss_dssp -GSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTTT
T ss_pred -cCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHcc
Confidence 000000 00 011346999999999999999999999998753
No 181
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.92 E-value=9.5e-24 Score=212.11 Aligned_cols=380 Identities=13% Similarity=0.088 Sum_probs=227.5
Q ss_pred cccccCCCCCCCCCHHHHHhhhcc-------CCCCeEEeccCCC---CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHH
Q 012991 12 HHVSKKPKLTRCISEAEIRDEFSH-------HQHGVARINNGSF---GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKG 81 (452)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ir~~~~~-------~~~~~~~l~~~~~---~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~ 81 (452)
+++.+.-.++.++.+....+.... +..+..|+|..+. .+.++.+.+++.. .... +.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~~--------~~~~--y~~~~~ 76 (456)
T 2ez2_A 7 PFRIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMM--------GDEA--YAGSEN 76 (456)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHTTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHTT--------CCCC--SSSCHH
T ss_pred CeeeeeecccCCCCHHHHHHHHHHCCCCcccCCcccceeeeccccCCccCCHHHHHHhhc--------chhh--cccChh
Confidence 455666666667666554333322 2233445554332 2445666666651 1111 234566
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcc-hhHHHHHHHHHHhcCcEEEE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAF-QAVKKSIQAYVTRAGGSVVE 160 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~-~s~~~~~~~~a~~~g~~v~~ 160 (452)
..+++++++++++.+ ++++|+|||+|+.+++.++ +++|| +++.++| .++...+ ...|.+++.
T Consensus 77 ~~~l~~~la~~~~~~---~~~~~~~gt~a~~~al~~l--------~~~gd--i~~~~~~~~~~~~~~----~~~G~~~~~ 139 (456)
T 2ez2_A 77 FYHLERTVQELFGFK---HIVPTHQGRGAENLLSQLA--------IKPGQ--YVAGNMYFTTTRYHQ----EKNGAVFVD 139 (456)
T ss_dssp HHHHHHHHHHHHCCS---EEEEESSHHHHHHHHHHHH--------CCTTC--EEEESSCCHHHHHHH----HHTTCEEEE
T ss_pred HHHHHHHHHHHhCCC---cEEEeCCcHHHHHHHHHHh--------CCCCC--EeccccccchhHHHH----HHcCCEEEE
Confidence 889999999999884 8999999999999999887 47888 7788888 5544443 456999998
Q ss_pred EeCCCC--CCC----hHHH-HHHHHHHHhccccCCCceEEEEEeccCC-CCccccc---HHHHHHHHHHcCCCEEEEecc
Q 012991 161 VQLPFP--LAS----EEEI-INEFKKGIEKGKKDGKMIRLAIIDHITS-MPCVVIP---VRKLVKICRDEGVDQVFVDAA 229 (452)
Q Consensus 161 ~~~~~~--~~~----~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n-~tG~~~~---l~~i~~l~~~~~~~~~ivD~a 229 (452)
+++... .+. .+.+ +++|++++++.. ..++++|++++++| ++|.+.| +++|+++|++||+ ++|+|++
T Consensus 140 v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i-~li~De~ 216 (456)
T 2ez2_A 140 IVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGI-KVFYDAT 216 (456)
T ss_dssp CBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTC-CEEEECT
T ss_pred ecccccccccccccccCCCCHHHHHHHHHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCC-eEEEEcc
Confidence 865310 001 1233 899999886321 13459999999998 9999887 8899999999999 6999999
Q ss_pred cccC---------Ccccccc--------ccCccEEEEcCcccCcCCCCcEEEEE-ecCccccCCCCCceeccCCCCcccc
Q 012991 230 HAMG---------SIKIDVK--------EIGADFYVSNLHKWFFCPPSVAFLYC-RKSILSSDMHHPVVSHEFGNGLPIE 291 (452)
Q Consensus 230 ~~~g---------~~~~~~~--------~~~~d~~~~s~~K~l~g~~G~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 291 (452)
|+.| ....+.. ...+|++++|++|+ +++...|+++. ++++++. + ........+..
T Consensus 217 ~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~-~~~~~gG~~~~~~~~~~~~-~-~~~~~~~~~~~---- 289 (456)
T 2ez2_A 217 RCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKD-CLVNIGGFLCMNDDEMFSS-A-KELVVVYEGMP---- 289 (456)
T ss_dssp THHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTT-TCCSSCEEEEESCHHHHHH-H-HHHHHHHTCCT----
T ss_pred ccccccccccccccccCCcchhhhhhhhcccCCEEEEeCccc-CCCCceeEEEECCHHHHHH-H-HHHHhhccCcc----
Confidence 9875 1111111 12368888889996 44332588888 4555543 1 11100000100
Q ss_pred cccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCc-cccC-C
Q 012991 292 SAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSR-LRVM-G 369 (452)
Q Consensus 292 ~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 369 (452)
.+ +..+...+.+ .++.....+ . +.+.++..++.+++.+.|.+. ++.+..|.. +.++++.++.. .+.. .
T Consensus 290 -~~-~~~~~~~~~a--~a~~~~~~~--~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~--~~~~~~~~~~~~~~~~~~ 359 (456)
T 2ez2_A 290 -SY-GGLAGRDMEA--MAIGLREAM--Q-YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVG--GHAVFLDARRFCEHLTQD 359 (456)
T ss_dssp -TT-TTCCHHHHHH--HHHHHHHHT--C-HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCC--SSEEEEEHHHHTTTSCGG
T ss_pred -cc-cCcchhHHHH--HHHHHHHHh--H-HHHHHHHHHHHHHHHHHHhcC-CCccccCCC--ceEEEEEhHHhcCCCChh
Confidence 00 1111112211 133333322 2 456677778888999999885 777665543 66777765210 0000 1
Q ss_pred hhhHHHHHHHHhhhcceEe-eecccCCCCCCCCCCCCCCCC-CCccceEEeccccc-CCHHHHHHHHHHHHHHHhcc
Q 012991 370 EDDALRLRGHLRVRFGVEV-PIHYQAPKDDGQPQAGARDKD-GIITGYARISHQVY-NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 370 ~~~~~~l~~~L~~~~gI~v-~~~~~~~~~~~~~~~~~~~~~-~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~~ 443 (452)
......+.+.|.+++||.+ +.+..+.+.. ...... ....+++|++++.. ++++|+++++++|+++++..
T Consensus 360 ~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~-----~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 360 EFPAQSLAASIYVETGVRSMERGIISAGRN-----NVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp GCHHHHHHHHHHHHHSEECEEESHHHHCBC-----TTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred hccHHHHHHHHHHhcCeeeecccccccccC-----ccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 1113445777743459985 3232110000 000000 11246899999876 79999999999999998753
No 182
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.92 E-value=1.2e-24 Score=214.50 Aligned_cols=334 Identities=10% Similarity=0.041 Sum_probs=214.1
Q ss_pred CCCeEEeccCC------CCCCcHHHHHHHHH-HHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCC--cEE
Q 012991 37 QHGVARINNGS------FGSCPKSVLADQQK-WQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVG--EIS 102 (452)
Q Consensus 37 ~~~~~~l~~~~------~~~~p~~v~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~--~i~ 102 (452)
.++++.|..|. ..+.++.+.+++.+ .+... .. ..|....+..++++.++++++.. +++ +|+
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~---~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~ 99 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH---GA--SLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATI 99 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCC---CC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCcc---cc--ccCCCCCchHHHHHHHHHHHhcCCcccccccceEEE
Confidence 35678887772 23444789999988 65321 11 12223345677888888887541 256 899
Q ss_pred EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHH
Q 012991 103 LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGI 181 (452)
Q Consensus 103 ~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i 181 (452)
+|+|+|+|+.+++..+. .+++||+|+++.|+|++....+ +..|.+++.++... ++.+.+ ++++++.+
T Consensus 100 ~t~g~~~a~~~~~~~~~------~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l 167 (397)
T 3fsl_A 100 QTLGGSGALKVGADFLK------RYFPESGVWVSDPTWENHVAIF----AGAGFEVSTYPWYD--EATNGVRFNDLLATL 167 (397)
T ss_dssp EESHHHHHHHHHHHHHH------HHCTTCCEEEESSCCHHHHHHH----HHTTCCEEEECCEE--TTTTEECHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHH------hcCCCCeEEEeCCCchhHHHHH----HHcCCceEEEeeee--ccCCcCcHHHHHHHH
Confidence 99999999999954321 2478999999999999875554 44699999995410 122333 89999999
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCcc-----cc---c-cccCccEEEE
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSIK-----ID---V-KEIGADFYVS 249 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~~-----~~---~-~~~~~d~~~~ 249 (452)
++. .++++++++++++||||.+++.+ +|+++|+++|+ ++|+|++++..... .. + ...+.++++.
T Consensus 168 ~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 243 (397)
T 3fsl_A 168 KTL---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAREL-IPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSN 243 (397)
T ss_dssp TTC---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEE
T ss_pred HhC---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCE-EEEEecCchhhccCcccccHHHHHHHhcCCCEEEEe
Confidence 642 36789999999999999997754 88999999999 89999998754432 11 1 1224567888
Q ss_pred cCcccCcCCCC--cEEEEEe---cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH---HhhcCHH
Q 012991 250 NLHKWFFCPPS--VAFLYCR---KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS---RFEGGID 321 (452)
Q Consensus 250 s~~K~l~g~~G--~G~l~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~~~~g~~ 321 (452)
|++|. +|++| +|++++. ++.+.. +.... .. ......++++...+.++..++.... .+....+
T Consensus 244 S~SK~-~~~~G~riG~~~~~~~~~~~~~~-~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 313 (397)
T 3fsl_A 244 SFSKI-FSLYGERVGGLSVMCEDAEAAGR-VLGQL-KA-------TVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVE 313 (397)
T ss_dssp ECTTT-TTCGGGCCEEEEEECSSHHHHHH-HHHHH-HH-------HHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred ccccc-ccCcCCCeeEEEEecCCHHHHHH-HHHHH-HH-------HHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99996 67666 7888753 233322 00000 00 0000012233333333333332110 0011467
Q ss_pred HHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDD 398 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~ 398 (452)
.++++++++++++.+.|.+++ ++.+..+.. +.++++.+ +...+.+.|.+ +||.+..
T Consensus 314 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~l~~-~gi~v~~-------- 372 (397)
T 3fsl_A 314 EMRTRILAMRQELVKVLSTEMPERNFDYLLNQR--GMFSYTGL----------SAAQVDRLREE-FGVYLIA-------- 372 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCC--SSEEECCC----------CHHHHHHHHHT-TCEECCT--------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceeecCCc--eEEEecCC----------CHHHHHHHHHh-CCEEECC--------
Confidence 788889999999999999885 555443332 55666444 33456666654 6999841
Q ss_pred CCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 399 GQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 399 ~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
.+ |++++.. +.++|++++++|+++
T Consensus 373 --------------g~--Ris~~~~-~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 373 --------------SG--RMCVAGL-NTANVQRVAKAFAAV 396 (397)
T ss_dssp --------------TC--EEEGGGC-CTTTHHHHHHHHHHH
T ss_pred --------------CC--eEEEEec-CHhhHHHHHHHHHhh
Confidence 12 9998754 557799999999875
No 183
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.92 E-value=1.6e-24 Score=221.47 Aligned_cols=359 Identities=12% Similarity=0.077 Sum_probs=222.0
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh----C--CC--CCCcEEEecChhHHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI----N--AD--DVGEISLVDNATTAA 111 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~--~~~~i~~t~g~t~a~ 111 (452)
++.|+.+.++..|+.+++++.+..... .++ ....+..++++.+++++ + .+ ++++|++|+|+|+|+
T Consensus 105 ~i~l~~g~~~~~~~~~v~a~~~~~~~~-----~y~--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 105 AVNYCHTELGLNRDKVVAEWVNGAVAN-----NYP--VPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTC-----SCC--SSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred heeccCCCCCcCCcHHHHHHHHHHHhC-----CCC--CCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 577777777766666776665554321 111 11122345555555554 2 22 136999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM 190 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~ 190 (452)
.+++.++.... .+++||+|+++.|+|.+....+ ...|.+++.+++..+.++.+.+ +++|++++ .++
T Consensus 178 ~~~~~~l~~~~---l~~~gd~Viv~~p~~~~~~~~~----~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l------~~~ 244 (533)
T 3f6t_A 178 VYAFHSLAENH---LLKKGDKIAINEPIFTPYLRIP----ELKDYELVEVDLHSYEKNDWEIEPNEIEKLK------DPS 244 (533)
T ss_dssp HHHHHHHHHTT---SSCTTCEEEEESSCCHHHHTSG----GGGGSEEEEECCCEETTTTSEECHHHHHHHS------CTT
T ss_pred HHHHHHhhhhh---ccCCcCEEEEcCCCcHHHHHHH----HHcCCeEEEEEecCCcccCCCCCHHHHHHHh------CCC
Confidence 99999732110 2589999999999999875554 3458899988653111222334 89999988 578
Q ss_pred eEEEEEeccCCCCcccccHH---HHHHHHH-HcCCCEEEEecccccCCcc-cccc--ccCccEEEEcCcccCcCCCC--c
Q 012991 191 IRLAIIDHITSMPCVVIPVR---KLVKICR-DEGVDQVFVDAAHAMGSIK-IDVK--EIGADFYVSNLHKWFFCPPS--V 261 (452)
Q Consensus 191 ~~lv~~~~~~n~tG~~~~l~---~i~~l~~-~~~~~~~ivD~a~~~g~~~-~~~~--~~~~d~~~~s~~K~l~g~~G--~ 261 (452)
+++|++++++||||.++|.+ +|+++|+ +||+ ++|+|++|+..... ..+. ..+.++++.|+||. +|++| +
T Consensus 245 ~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~-~g~~G~Ri 322 (533)
T 3f6t_A 245 IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKL-MIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKL-FGCTGWRL 322 (533)
T ss_dssp EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTC-EEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHH-HTCGGGCE
T ss_pred CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCC-EEEEcCCccccccCccCHhhcCCCCEEEEecCccc-CCCcccce
Confidence 99999999999999999876 7788888 6899 89999998743221 1111 11356899999995 77777 8
Q ss_pred EEEEEecC-----ccccCCCCCce----eccCC--CC---------------cccccccccccCccccccHHH-HHHHHH
Q 012991 262 AFLYCRKS-----ILSSDMHHPVV----SHEFG--NG---------------LPIESAWIGTRDYSAQLVIPS-AVTFVS 314 (452)
Q Consensus 262 G~l~~~~~-----~~~~~l~~~~~----~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~-al~~~~ 314 (452)
|+++++++ ++.. + .+.. ...|+ .. .........+.+...+.++.. ++..+.
T Consensus 323 G~l~~~~~~~~~~li~~-l-~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 323 GVIALNEKNVFDDNIAH-L-DKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp EEEEEESSCHHHHHHHT-S-CHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred EEEEECcHHHHHHHHHh-c-chhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 99999887 4332 1 0000 00000 00 000111112333333333211 233332
Q ss_pred ------HhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCC----------hhhHHHHHH
Q 012991 315 ------RFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMG----------EDDALRLRG 378 (452)
Q Consensus 315 ------~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~ 378 (452)
......+.++++++++++.+.+.|. + ++.+..+.. +.++++.++....... ..+..++..
T Consensus 401 ~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~~~--g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~ 476 (533)
T 3f6t_A 401 TSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PKDETDTNT--HYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLL 476 (533)
T ss_dssp TCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTTBC--CSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-CccccCCCc--eEEEEEehHhhhhhccchHHHHHhhccCCHHHHHH
Confidence 1111356778888888888988886 3 555544443 6677777641100000 123446666
Q ss_pred HHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 379 HLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 379 ~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.|.+++||.+.++..+. ...+++|+|++. .+++++++++++|++++++
T Consensus 477 ~ll~~~GV~v~pg~~f~---------------~~~~~iRls~a~-~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 477 KLAEKNGVVLVDGVGFG---------------AKPGELRVSQAN-LPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp HHHHHTTSSSCTTEEEC---------------SSTTEEEEESSS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEeCCcccC---------------CCCCEEEEEEee-CCHHHHHHHHHHHHHHHHH
Confidence 66556799997766552 235799999965 4788999999999998865
No 184
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.92 E-value=6.8e-25 Score=219.80 Aligned_cols=349 Identities=15% Similarity=0.094 Sum_probs=220.3
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHh--cCCchh-h-hhhhhHHHHHHH-HHHHhHhCCCCCCcEEEecChhHHHHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFL--QQPDDF-Y-FNSLRKGILESR-AAVKDLINADDVGEISLVDNATTAAAI 113 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~--~~~~~~-~-~~~~~~~~~~~~-~~la~~~~~~~~~~i~~t~g~t~a~~~ 113 (452)
..+.|.. +..+.|+.|.+++.+.+.... +++... + +.......+++. +++++++|++ ...++++||++|+..
T Consensus 46 ~~i~l~~-~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~~~v~~~sGs~a~~~ 122 (447)
T 3h7f_A 46 DTLEMIA-SENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--FANVQPHSGAQANAA 122 (447)
T ss_dssp HSEECCT-TCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHH
T ss_pred CceeEec-CCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--ceEEEeCCHHHHHHH
Confidence 4566643 445668889999987654211 111111 1 111122234444 9999999996 333438889999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEeCCcchhHH-HHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCce
Q 012991 114 VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVK-KSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 114 ~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~-~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
++.++ +++||+|++++++|.++. ..........+..+..++++ . +++.+ ++++++++++ .++
T Consensus 123 a~~~~--------~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~-~~~~~d~~~l~~~i~~-----~~~ 186 (447)
T 3h7f_A 123 VLHAL--------MSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVD--P-ATHLIDMDAVRATALE-----FRP 186 (447)
T ss_dssp HHHHH--------CCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCC--T-TTCSCCHHHHHHHHHH-----HCC
T ss_pred HHHHh--------cCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcC--c-ccCCcCHHHHHHHHHh-----cCC
Confidence 99877 589999999999987721 11110011124556666431 1 22334 8999998853 467
Q ss_pred EEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc----ccccccCccEEEEcCcccCcCCCCcEEEEEe
Q 012991 192 RLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLYCR 267 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~ 267 (452)
++|++++++|+++. ++++|.++|++||+ ++|+|++|+.|... .+.. .++|+++.|+||++.||.| |+++.+
T Consensus 187 ~~i~~~~~~~~~~~--~l~~i~~l~~~~g~-lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~ 261 (447)
T 3h7f_A 187 KVIIAGWSAYPRVL--DFAAFRSIADEVGA-KLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGK 261 (447)
T ss_dssp SEEEEECSSCCSCC--CHHHHHHHHHHHTC-EEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEEC
T ss_pred eEEEEcCCCCCCcc--CHHHHHHHHHHcCC-EEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEEC
Confidence 89999888888766 99999999999999 89999998765321 1111 2579999999999888887 999988
Q ss_pred cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH----cC
Q 012991 268 KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA----WG 343 (452)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~~ 343 (452)
+++.+. + .... .+ ...++++...+.++.+++..... .+++.+.+++.++++++.+.|.+. +|
T Consensus 262 ~~~~~~-l-~~~~---~~-------~~~~~~~~~~~~a~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g 327 (447)
T 3h7f_A 262 QQYAKA-I-NSAV---FP-------GQQGGPLMHVIAGKAVALKIAAT--PEFADRQRRTLSGARIIADRLMAPDVAKAG 327 (447)
T ss_dssp GGGHHH-H-HHHH---TT-------TTCSSCCHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHTSHHHHHTT
T ss_pred HHHHHH-H-hhhc---CC-------cccCCccHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 877654 1 1110 00 01134444344555555544332 146778888899999999998765 46
Q ss_pred CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCC-CCCCCCCCCCCCCCCccceEEecccc
Q 012991 344 TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPK-DDGQPQAGARDKDGIITGYARISHQV 422 (452)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~iRis~~~ 422 (452)
+++..+. ...+++++.+.. .+.+...+.+.|.+ .||.+.....+.. .+ ...++++|+++..
T Consensus 328 ~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~l~~-~GI~v~~~~i~~~~~~-----------p~~~~~lRig~~~ 389 (447)
T 3h7f_A 328 VSVVSGG-TDVHLVLVDLRD-----SPLDGQAAEDLLHE-VGITVNRNAVPNDPRP-----------PMVTSGLRIGTPA 389 (447)
T ss_dssp CEEGGGS-CSSSEEEEECTT-----SSCCHHHHHHHHHH-TTEECBC------------------------CEEEEECHH
T ss_pred eEEecCC-CCCCEEEEEcCC-----CCCCHHHHHHHHHH-CCeEEecccCCCCCCC-----------CCCCCceeccCHH
Confidence 6654322 125577776641 23456667777754 5999862211110 00 1335679999865
Q ss_pred c----CCHHHHHHHHHHHHHHHhcc
Q 012991 423 Y----NTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 423 ~----~t~~di~~l~~~l~~~~~~~ 443 (452)
. .+++|+++++++|++++...
T Consensus 390 ~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 390 LATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred HhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 4 46899999999999998764
No 185
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.92 E-value=3.4e-24 Score=214.80 Aligned_cols=353 Identities=13% Similarity=0.050 Sum_probs=217.0
Q ss_pred CCCCHHHHHhhhccCCC-CeEEeccCCC-C-----CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-
Q 012991 22 RCISEAEIRDEFSHHQH-GVARINNGSF-G-----SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI- 93 (452)
Q Consensus 22 ~~~~~~~ir~~~~~~~~-~~~~l~~~~~-~-----~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~- 93 (452)
++..+-.+.+.|...+. .++.|..+.+ . +..+.+.+++..... ..+.....|....+..++++.+++++
T Consensus 32 ~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~---~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 108 (448)
T 3meb_A 32 PPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISS---DLSKYNKEYPPVAGFPLFLEAAQFLMF 108 (448)
T ss_dssp CCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHH---CTTTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhh---cccCCCCCCCCCcchHHHHHHHHHHhc
Confidence 34445555666654433 3678776665 2 333445555444331 01111122333455788999999987
Q ss_pred CCCC----CCcEEE--ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC
Q 012991 94 NADD----VGEISL--VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL 167 (452)
Q Consensus 94 ~~~~----~~~i~~--t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~ 167 (452)
|.+. +++|++ |+|||+|+.+++..+. .+.+||+|++++|+|.++...+..+.+..|.+++.++..
T Consensus 109 g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~------~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~--- 179 (448)
T 3meb_A 109 GKDSKAAQEGRIASCQSLSGTGSLHIGFEFLH------LWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYL--- 179 (448)
T ss_dssp CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHH------HHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCB---
T ss_pred CCCccccCcCcEEEEECCcHHHHHHHHHHHHH------HhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecc---
Confidence 7641 479999 9999999988543221 247899999999999987666542112679999999542
Q ss_pred CCh--HHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCc-cc--c
Q 012991 168 ASE--EEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSI-KI--D 238 (452)
Q Consensus 168 ~~~--~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~-~~--~ 238 (452)
+.+ +.+ ++++++.+++. .++++++++++++||||..++.+ +|+++|+++|+ ++|+|++++.... +. +
T Consensus 180 ~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~-~li~Deay~~~~~~~~~~~ 255 (448)
T 3meb_A 180 RKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKH-IAFFDSAYQGFATGSFEAD 255 (448)
T ss_dssp CTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTTSSSCHHHH
T ss_pred ccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCC-EEEEecccccccCCCcccC
Confidence 222 334 89999998642 24688999999999999998855 58999999999 8999999764322 11 1
Q ss_pred ---cc----ccCccEEEEcCcccCcCCCC--cEEE--EE--------e-c----CccccCCCCCceeccCCCCccccccc
Q 012991 239 ---VK----EIGADFYVSNLHKWFFCPPS--VAFL--YC--------R-K----SILSSDMHHPVVSHEFGNGLPIESAW 294 (452)
Q Consensus 239 ---~~----~~~~d~~~~s~~K~l~g~~G--~G~l--~~--------~-~----~~~~~~l~~~~~~~~~~~~~~~~~~~ 294 (452)
+. .....+++.|+||. +|++| +|++ ++ . + +++.. + ... ....
T Consensus 256 ~~~~~~~~~~~~~~i~~~S~SK~-~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~-l-~~~-----------~~~~ 321 (448)
T 3meb_A 256 AFAVRMFVDAGVEVLVAQSFSKN-FGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSG-M-TLQ-----------IRKT 321 (448)
T ss_dssp THHHHHHHHTTCCEEEEEECTTT-SCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHH-H-HHH-----------HHTT
T ss_pred chhHHHHhhcCCcEEEEeccccc-CCCccccceeeeeeeccccccccCCHHHHHHHHHH-H-HHH-----------Hhcc
Confidence 11 11234678899995 77777 7887 55 3 2 23322 0 000 0001
Q ss_pred ccccCccccccHHHHHHHH---HHhhcCHHHHHHHHHHHHHHHHHHHHHH--cC------CCcCCCcccccceEEEEcCC
Q 012991 295 IGTRDYSAQLVIPSAVTFV---SRFEGGIDGIMQRNHEQALKMARMLANA--WG------TSLGSPPEICAAMVMVGLPS 363 (452)
Q Consensus 295 ~~~~~~~~~~~~~~al~~~---~~~~~g~~~~~~~~~~~~~~l~~~L~~~--~~------~~~~~~~~~~~~~~~~~~~~ 363 (452)
..+++...+.++..++... ..+...++.++++++++++++.+.|.++ ++ +....+.. +.+.+..+
T Consensus 322 ~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~-- 397 (448)
T 3meb_A 322 WSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAI--GMFTFTGL-- 397 (448)
T ss_dssp TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCC--SSEEECCC--
T ss_pred cCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCc--eEEEecCC--
Confidence 1223333333333333211 0111136778888999999999999886 33 33222222 44555333
Q ss_pred ccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHh
Q 012991 364 RLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVE 441 (452)
Q Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~ 441 (452)
+. ++...|.+++||++.++ ..|||++.. +.++|++++++|+++++
T Consensus 398 --------~~-~~~~~ll~~~gV~v~~G-----------------------~gRis~a~~-~~~~i~~~~~~l~~~l~ 442 (448)
T 3meb_A 398 --------TP-EHVDYLKEKWSIYLVKA-----------------------GGRMSMCGL-TESNCDYVAEAIHDAVT 442 (448)
T ss_dssp --------CH-HHHHHHHHHHCEEECSG-----------------------GGEEEGGGC-CTTTHHHHHHHHHHHHH
T ss_pred --------CH-HHHHHHHHhCCEEEeCC-----------------------CcEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 33 44555545569998421 139999754 55669999999999986
No 186
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.92 E-value=1.5e-24 Score=218.60 Aligned_cols=387 Identities=13% Similarity=0.091 Sum_probs=223.6
Q ss_pred ccccCCCCCCCCCHHHHHhhhccC-------CCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Q 012991 13 HVSKKPKLTRCISEAEIRDEFSHH-------QHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILES 85 (452)
Q Consensus 13 ~~~~~~~~~~~~~~~~ir~~~~~~-------~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (452)
++.+.-.++.++.+....+..... ..+..|+|..+.... +.+.+++.+.+.. +... +.......++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ylD~~~~~~~-~~v~~a~~~~~~~----~~~~--y~~~~~~~~l 81 (467)
T 1ax4_A 9 FRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGT-NAMSDHQWAAMIT----GDEA--YAGSRNYYDL 81 (467)
T ss_dssp EEEEEEEECCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCSSSC-CCEEHHHHHHHHT----CCCC--SSSCHHHHHH
T ss_pred hhhceeecccccchhHHHHHHHhcCcCcccCCCCceeeecccCcCC-HHHHHHHHHHHhh----cccc--cccCccHHHH
Confidence 444444555666665544433322 233445554333333 3466666655431 1111 2234567889
Q ss_pred HHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCE---EEEeCCcchhHHHHHHHHHHhcCcEEEEEe
Q 012991 86 RAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDT---VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQ 162 (452)
Q Consensus 86 ~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~---Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~ 162 (452)
+++++++++. +++++|+|||+|+.+++.++.... ..+||+ |+++.+.|.+....+ ...|.+++.++
T Consensus 82 ~~~la~~~~~---~~v~~t~ggt~A~~~al~~~~~~~----~~~Gd~~~~viv~~~~~~~~~~~~----~~~g~~~~~~~ 150 (467)
T 1ax4_A 82 KDKAKELFNY---DYIIPAHQGRGAENILFPVLLKYK----QKEGKAKNPVFISNFHFDTTAAHV----ELNGCKAINIV 150 (467)
T ss_dssp HHHHHHHHCC---CEEEEESSHHHHHHHHHHHHHHHH----HHTTCCSSCEEEESSCCHHHHHHH----HHTTCEEEECB
T ss_pred HHHHHHHcCC---CcEEEcCCcHHHHHHHHHHHHHhh----ccCCCccceEEEeccccchhhHHH----hccCCceeccc
Confidence 9999999987 589999999999999999873100 017888 888833334433333 44588887664
Q ss_pred CCC--CCC----ChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-ccccc---HHHHHHHHHHcCCCEEEEecccc
Q 012991 163 LPF--PLA----SEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVIP---VRKLVKICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 163 ~~~--~~~----~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~~~ivD~a~~ 231 (452)
... +.+ ..+.+ +++|++++++.. .+++++|++++++|++ |.++| +++|+++|++||+ ++|+|++++
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi-~li~De~~~ 227 (467)
T 1ax4_A 151 TEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI-FVVMDSARF 227 (467)
T ss_dssp CGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC-CEEEECTTH
T ss_pred ccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCC-EEEEEchhh
Confidence 321 101 01234 899999996421 1379999999999999 88765 5789999999999 699999876
Q ss_pred c-----------CCccccccc------cCccEEEEcCcccCcCCCCcEEEEEe-c-CccccCCCCCceeccCCCCccccc
Q 012991 232 M-----------GSIKIDVKE------IGADFYVSNLHKWFFCPPSVAFLYCR-K-SILSSDMHHPVVSHEFGNGLPIES 292 (452)
Q Consensus 232 ~-----------g~~~~~~~~------~~~d~~~~s~~K~l~g~~G~G~l~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~ 292 (452)
. +..+.++.. ..+|++++|+||+++.+.| |+++.+ + ++++. + ...... ++. .
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~-~-~~~~~~-~~~-~---- 298 (467)
T 1ax4_A 228 CENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTL-A-RQRCVP-MEG-F---- 298 (467)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHH-H-HHHHHH-HTC-S----
T ss_pred hhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHH-H-Hhhccc-ccc-c----
Confidence 5 222222211 2368999999997544435 677676 4 55543 1 111000 000 0
Q ss_pred ccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccc-c-CCh
Q 012991 293 AWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR-V-MGE 370 (452)
Q Consensus 293 ~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 370 (452)
...+..+...+.++..+++... . +...++..++++++.+.|.+ .++.+..+.. +.++++.+..... . ..+
T Consensus 299 ~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 370 (467)
T 1ax4_A 299 VTYGGLAGRDMAAMVQGLEEGT----E-EEYLHYRIGQVKYLGDRLRE-AGIPIQYPTG--GHAVFVDCKKLVPQIPGDQ 370 (467)
T ss_dssp TTTTTCCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHHHHHHHH-TTCCBCSSCC--SSEEEEESTTTCTTSCGGG
T ss_pred cccCCccchHHHHHHHHHHHhh----h-hhHHHHHHHHHHHHHHHHHh-CCCCcccCCC--ceEEEEehhhhccccccCC
Confidence 0012222222222222332211 1 12333445777889999987 4777665543 6677777211000 0 013
Q ss_pred hhHHHHHHHH-hhhcceEeee-cccCCCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHHHHhc
Q 012991 371 DDALRLRGHL-RVRFGVEVPI-HYQAPKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 371 ~~~~~l~~~L-~~~~gI~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~~~~~ 442 (452)
.+..++.+.| .+ .||.+.. +..+.+... .... + .....+++|++++.+ +|.+|+++++++|+++++.
T Consensus 371 ~~~~~l~~~L~~~-~gv~v~~~g~~~~~~~~--~~g~-~-~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 371 FPAQAVINALYLE-SGVRAVEIGSFLLGRDP--ATGE-Q-KHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp CHHHHHHHHHHHH-HCEECEEESHHHHCBCT--TTCS-B-CCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHh-cCceeeecCcccccccc--cccc-c-cccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 4567899988 55 5999865 322100000 0000 0 001237999999844 8999999999999998865
No 187
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.92 E-value=8.9e-25 Score=215.38 Aligned_cols=334 Identities=12% Similarity=0.054 Sum_probs=213.4
Q ss_pred CCCeEEeccCCC------CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCC-----CCCcEEE--
Q 012991 37 QHGVARINNGSF------GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINAD-----DVGEISL-- 103 (452)
Q Consensus 37 ~~~~~~l~~~~~------~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~i~~-- 103 (452)
++.++.|..+.+ .+.++.+.+++.+.+... ....|.......+++++++++++.. ++++|++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-----~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 99 (396)
T 2q7w_A 25 RPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE-----TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQ 99 (396)
T ss_dssp ---CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC-----CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCceecccccccCCCCCccCcHHHHHHHHhhcCcc-----cccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEe
Confidence 356778877752 245677999988776431 1112333455788999999988321 1578988
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHh
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIE 182 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~ 182 (452)
|+||++|+.+++.++. .+.+||+|++++|+|++....+ +..|.+++.++... .+++.+ ++++++.++
T Consensus 100 ~~g~~~a~~~~~~~~~------~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~ 167 (396)
T 2q7w_A 100 TPGGTGALRVAADFLA------KNTSVKRVWVSNPSWPNHKSVF----NSAGLEVREYAYYD--AENHTLDFDALINSLN 167 (396)
T ss_dssp ESHHHHHHHHHHHHHH------HHSCCCEEEEEESCCTHHHHHH----HHTTCEEEEEECEE--TTTTEECHHHHHHHHT
T ss_pred cccchhhHHHHHHHHH------HhCCCCEEEEcCCCchhHHHHH----HHcCCceEEEeccc--CCCCCcCHHHHHHHHH
Confidence 9999999999987652 1368999999999999876554 44699999986521 122233 899999985
Q ss_pred ccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc-------ccc-cccc-CccEEEEc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI-------KID-VKEI-GADFYVSN 250 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~-------~~~-~~~~-~~d~~~~s 250 (452)
+. .++++++++++++||||.++|. ++|+++|++||+ ++|+|++++.... ++. +... +.++++.|
T Consensus 168 ~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 243 (396)
T 2q7w_A 168 EA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGW-LPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASS 243 (396)
T ss_dssp TC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEE
T ss_pred hC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEecccccccCCccchhHHHHHHHhcCCcEEEEEe
Confidence 32 2357889999999999999874 578999999999 8999999875332 111 1111 34578899
Q ss_pred CcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH---HhhcCHHH
Q 012991 251 LHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS---RFEGGIDG 322 (452)
Q Consensus 251 ~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~~~~g~~~ 322 (452)
++|+ +|++| +|++++ +++.+.. +...... ......++++...+.++.++++... .+....+.
T Consensus 244 ~sK~-~~~~G~riG~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~ 313 (396)
T 2q7w_A 244 YSXN-FGLYNERVGACTLVAADSETVDR-AFSQMKA--------AIRANYSNPPAHGASVVATILSNDALRAIWEQELTD 313 (396)
T ss_dssp CTTT-TTCGGGCCEEEEEECSSHHHHHH-HHHHHHH--------HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cccc-ccccccccceEEEEcCCHHHHHH-HHHHHHH--------HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 9996 67677 699887 4432221 1000000 0000012223334444444443220 00114667
Q ss_pred HHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 323 IMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 323 ~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
++++++++++++.+.|.++. ++++..+.. +.++++.+ +...+.+.|.+ +||.+.
T Consensus 314 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~l~~-~gv~v~---------- 370 (396)
T 2q7w_A 314 MRQRIQRMRQLFVNTLQEKGANRDFSFIIKQN--GMFSFSGL----------TKEQVLRLREE-FGVYAV---------- 370 (396)
T ss_dssp C-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCC--SSEEECCC----------CHHHHHHHHHH-HCEECC----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcceecCCC--ceEEEecC----------CHHHHHHHHHh-cCeeec----------
Confidence 77888899999999998874 255443332 45555433 23456566644 599984
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
..+|++++.. +++++++++++|+++
T Consensus 371 --------------~~~Ris~~~~-~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 371 --------------ASGRVNVAGM-TPDNMAPLCEAIVAV 395 (396)
T ss_dssp --------------TTCEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred --------------CCceEEEeec-CHHHHHHHHHHHHhc
Confidence 1369999854 899999999999876
No 188
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.92 E-value=2.3e-24 Score=213.60 Aligned_cols=338 Identities=11% Similarity=0.035 Sum_probs=219.5
Q ss_pred CCCeEEeccCCC------CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCC----CCCcEEE--
Q 012991 37 QHGVARINNGSF------GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NAD----DVGEISL-- 103 (452)
Q Consensus 37 ~~~~~~l~~~~~------~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~----~~~~i~~-- 103 (452)
+++++.|..+.+ .+.++.+.+++.+.... ......|.......++++++++++ +.. ++++|++
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 104 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQ 104 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----TTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhC----hhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEE
Confidence 567888888764 24557788888776521 111112333455688999999998 431 2589999
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCC-----CEEEEeCCcchhHHHHHHHHHHhcCcE-EEEEeCCCCCCChHHH-HHH
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRN-----DTVLMLHCAFQAVKKSIQAYVTRAGGS-VVEVQLPFPLASEEEI-INE 176 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g-----~~Vl~~~~~~~s~~~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~-~~~ 176 (452)
|+||++|+.+++..+. .+.+| |+|+++.++|++....+ ...|.+ ++.++... ++.+.+ +++
T Consensus 105 t~gg~~a~~~~~~~~~------~~~~g~~~~~d~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~~~~--~~~~~~d~~~ 172 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLA------RWYNGTNNKDTPVYVSSPTWENHNGVF----TTAGFKDIRSYRYWD--TEKRGLDLQG 172 (412)
T ss_dssp EEHHHHHHHHHHHHHH------HHSSSSSCCCSCEEEEESCCTHHHHHH----HHTTCSCEEEEECEE--TTTTEECHHH
T ss_pred CCCcHHHHHHHHHHHH------HhCcCcCCCCCeEEEcCCCcHHHHHHH----HHcCCceeEEEeeec--CCCCccCHHH
Confidence 9999999999965331 13678 99999999999875554 446888 88886521 122233 888
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCc--------ccc-ccc-cC
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSI--------KID-VKE-IG 243 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~--------~~~-~~~-~~ 243 (452)
+++.+++. ..++++|++++++||||.++|. ++|+++|++||+ ++|+|++++.... ++. +.. .+
T Consensus 173 l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 1ajs_A 173 FLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL-FPFFDSAYQGFASGNLEKDAWAIRYFVSEGF 248 (412)
T ss_dssp HHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred HHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEcccccccCCcccccchHHHHHhccCC
Confidence 99888642 3467889999999999999874 578999999999 8999999753221 111 111 12
Q ss_pred ccEEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH---H
Q 012991 244 ADFYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS---R 315 (452)
Q Consensus 244 ~d~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~---~ 315 (452)
.++++.|+||. +|++| +|++++ +++.++. +...... ......+.++...+.++.++++... +
T Consensus 249 ~~i~~~s~sK~-~~~~G~riG~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 318 (412)
T 1ajs_A 249 ELFCAQSFSKN-FGLYNERVGNLTVVAKEPDSILR-VLSQMQK--------IVRVTWSNPPAQGARIVARTLSDPELFHE 318 (412)
T ss_dssp CEEEEEECTTT-SCCGGGCEEEEEEECSSHHHHHH-HHHHHHH--------HHHTTTSSCCSHHHHHHHHHHHSHHHHHH
T ss_pred cEEEEEecccc-cCCCCcceEEEEEecCCHHHHHH-HHHHHHH--------HHhcccCCCChHHHHHHHHHHcCcchhHH
Confidence 34888999995 77777 799988 6653221 1000000 0000012234444555555555331 0
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecc
Q 012991 316 FEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHY 392 (452)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~ 392 (452)
+....+.++++++++++++.+.|.++. ++.+..+.. +.+++..+ +...+...|. ++||.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~l~-~~gv~v~--- 382 (412)
T 1ajs_A 319 WTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQI--GMFSFTGL----------NPKQVEYLIN-QKHIYLL--- 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCC--SSEEECCC----------CHHHHHHHHH-TTCEECC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCC--ceEEEeCC----------CHHHHHHHHH-hCCEEec---
Confidence 011467888899999999999998873 255443322 44555433 2334545554 4699984
Q ss_pred cCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 393 QAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+|++++. .+++++++++++|+++++.
T Consensus 383 ---------------------~~~Ris~~~-~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 383 ---------------------PSGRINMCG-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp ---------------------TTSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred ---------------------CCcEEEeee-CCHHHHHHHHHHHHHHHHh
Confidence 136999984 4899999999999998754
No 189
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.92 E-value=4.5e-23 Score=206.66 Aligned_cols=343 Identities=11% Similarity=0.065 Sum_probs=215.9
Q ss_pred CCCCcHHHH-H-HHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhccccc-
Q 012991 48 FGSCPKSVL-A-DQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTE- 124 (452)
Q Consensus 48 ~~~~p~~v~-e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~- 124 (452)
.++.++.|. + ++.+++.......... .....+...++.+.++++++..+.++|+|++|||+|++.++..+. .+..
T Consensus 68 lG~~~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~-~~~~~ 145 (449)
T 2cjg_A 68 LGMNPPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAF-DWKSR 145 (449)
T ss_dssp SCBSCHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHH-HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHH-HHhcc
Confidence 455677799 8 9988332221111111 112345678899999999973236899999999999999998542 1110
Q ss_pred -----CC-CCCCCEEEEeCCcchhHHHHHHHHH-----HhcCc-----EEEEEeCCCCCCCh------HHH-HHHHHHHH
Q 012991 125 -----GR-FHRNDTVLMLHCAFQAVKKSIQAYV-----TRAGG-----SVVEVQLPFPLASE------EEI-INEFKKGI 181 (452)
Q Consensus 125 -----~~-~~~g~~Vl~~~~~~~s~~~~~~~~a-----~~~g~-----~v~~~~~~~~~~~~------~~~-~~~l~~~i 181 (452)
.. -.++++|++.++.|++....+..+. .+.+. .+..++.+.+..+. ... +++|++.+
T Consensus 146 ~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i 225 (449)
T 2cjg_A 146 HNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAF 225 (449)
T ss_dssp HHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHH
Confidence 00 0128899999999887544321110 01122 45555331100111 123 77789888
Q ss_pred hccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCc
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLH 252 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~ 252 (452)
++. ++++++|+++.++|++|...+ +++|.++|++||+ ++|+|++|+ +|... .+.....+|++++ +
T Consensus 226 ~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~--s 299 (449)
T 2cjg_A 226 ETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDA-LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAF--G 299 (449)
T ss_dssp HHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--C
T ss_pred Hhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCc-EEEEeccccCCCccCcceeecccCCCceEEEe--c
Confidence 642 367899999988899998766 8999999999999 899999998 43321 1222335787755 5
Q ss_pred ccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 253 KWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 253 K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
|++ + +|++++++++++. +....... +. .. .+.+.+...+.+..++++.+.+ +.+.++++++++
T Consensus 300 K~l--~--iG~~~~~~~~~~~-l~~~~~~~--~~---~~--~t~~~n~~~~~aa~aal~~~~~-----~~~~~~~~~~~~ 362 (449)
T 2cjg_A 300 KKT--Q--VCGVMAGRRVDEV-ADNVFAVP--SR---LN--STWGGNLTDMVRARRILEVIEA-----EGLFERAVQHGK 362 (449)
T ss_dssp GGG--S--SEEEEECGGGGGS-TTCTTTST--TS---SC--CSSSSCHHHHHHHHHHHHHHHH-----HTHHHHHHHHHH
T ss_pred Ccc--c--EEEEEECHHHhhh-hhhcccCC--cc---cc--cCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHH
Confidence 986 3 7888898887764 21101000 00 00 1122334445555566666553 345778888999
Q ss_pred HHHHHHHHHc-CCCc-CCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 333 KMARMLANAW-GTSL-GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 333 ~l~~~L~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
++.+.|.++. ++.. .......+.++++.++ ...+..++.+.|.+ .||.+..+
T Consensus 363 ~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~l~~-~Gv~v~~~------------------- 416 (449)
T 2cjg_A 363 YLRARLDELAADFPAVVLDPRGRGLMCAFSLP------TTADRDELIRQLWQ-RAVIVLPA------------------- 416 (449)
T ss_dssp HHHHHHHHHHHHSTTTSEEEEEETTEEEEECS------SHHHHHHHHHHHHH-TTEECEEE-------------------
T ss_pred HHHHHHHHHHhhCCCceeeEeeccEEEEEEEC------ChHHHHHHHHHHHH-CCeEEecC-------------------
Confidence 9999998752 1221 1111223678888775 22346678998876 49998642
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..+++|++++..+|++||++++++|+++++.
T Consensus 417 -g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 417 -GADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp -TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1369999999889999999999999998753
No 190
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.92 E-value=9e-24 Score=211.88 Aligned_cols=354 Identities=12% Similarity=0.085 Sum_probs=220.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..++.++.+.+++.+.+.... .+. +.....+...++++.++++++.+ .+++++|+|||+|+..++.++.. +....
T Consensus 63 ~lG~~~~~v~~a~~~~~~~~~--~~~-~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggsea~~~al~~~~~-~~~~~ 137 (449)
T 3a8u_X 63 GAGHTRKEIQEAVAKQLSTLD--YSP-GFQYGHPLSFQLAEKITDLTPGN-LNHVFFTDSGSECALTAVKMVRA-YWRLK 137 (449)
T ss_dssp TTCBSCHHHHHHHHHHTTTCS--CCC-SSSCCCHHHHHHHHHHHTTSSTT-EEEEEEESSHHHHHHHHHHHHHH-HHHHT
T ss_pred cCCCCCHHHHHHHHHHHHhCC--Ccc-ccccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHHHH-HHHhc
Confidence 345557889999988765421 111 10223456788999999999874 68999999999999999987631 10000
Q ss_pred -CCCCCEEEEeCCcchhHHHHHHHHHH----hcC-----cEEEEEeCCCCC-------C--ChHHH-HHHHHHHHhcccc
Q 012991 127 -FHRNDTVLMLHCAFQAVKKSIQAYVT----RAG-----GSVVEVQLPFPL-------A--SEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 127 -~~~g~~Vl~~~~~~~s~~~~~~~~a~----~~g-----~~v~~~~~~~~~-------~--~~~~~-~~~l~~~i~~~~~ 186 (452)
-.++++|++.++.|++.......+.. +.+ ..+..++.+... + +.+.. +++|++++++..
T Consensus 138 g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~- 216 (449)
T 3a8u_X 138 GQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD- 216 (449)
T ss_dssp TCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC-
Confidence 02678999999998875443322110 000 124445432110 1 12333 788999886420
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccc-ccCCcc----ccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAH-AMGSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~-~~g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
.+++++|+++..++++|.+.| +++|.++|++||+ ++|+|++| ++|... .+.....+|++ |++|++.+
T Consensus 217 -~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~-~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~ 292 (449)
T 3a8u_X 217 -ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNI-LLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN 292 (449)
T ss_dssp -GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT
T ss_pred -CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCC-EEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC
Confidence 146788888887788999888 9999999999999 89999999 465331 12222346877 55598765
Q ss_pred C-CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 012991 258 P-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMAR 336 (452)
Q Consensus 258 ~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~ 336 (452)
+ ..+|++++++++++. +......... .. .....+.+.+...+.+..++++.+.+ +.+.++.+++.+++++
T Consensus 293 G~~~~G~~~~~~~~~~~-l~~~~~~~~~-~~--~~~~~t~~~~~~~~aa~~aal~~~~~-----~~~~~~~~~~~~~l~~ 363 (449)
T 3a8u_X 293 GAIPMGAVIASTEIYQT-FMNQPTPEYA-VE--FPHGYTYSAHPVACAAGLAALCLLQK-----ENLVQSVAEVAPHFEK 363 (449)
T ss_dssp TSSCCEEEEEEHHHHHH-HHTCSSCTTS-CS--SCCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECHHHHHH-hhccCccccc-cc--ccccCCCcccHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHH
Confidence 2 228999998877664 2110000000 00 00001122333444455556666553 2467788899999999
Q ss_pred HHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 337 MLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 337 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.|.++..+.........+.++++.++...... ..+..++.+.|.++ ||.+..+ ++++
T Consensus 364 ~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~-~~~~~~~~~~l~~~-Gv~v~~~---------------------g~~i 420 (449)
T 3a8u_X 364 ALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA-IVRPFEAGMALWKA-GFYVRFG---------------------GDTL 420 (449)
T ss_dssp HHHTTTTSTTEEEEEEETTEEEEEECCBTTBS-SHHHHHHHHHHHHH-TEECEEE---------------------TTEE
T ss_pred HHHHHhcCCCeEEEeeeEEEEEEEEecCcccc-cccHHHHHHHHHHC-CcEEecC---------------------CCEE
Confidence 99875334332211234678888886310000 00334688888775 9998632 1589
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++..+|++|+++++++|+++++.
T Consensus 421 Ris~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 421 QFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 99998888999999999999998864
No 191
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.92 E-value=3.1e-23 Score=207.30 Aligned_cols=339 Identities=13% Similarity=0.071 Sum_probs=214.7
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCC-CcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDV-GEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
+..++.+.+++.+.+... .. ..+.....+...+++++++++++.. . ++++||+||++|+..++.++. ..
T Consensus 58 G~~~p~v~~a~~~~~~~~-~~--~~~~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~ggsea~~~al~~~~------~~ 127 (439)
T 3dxv_A 58 GYGHPAIVAAVSAAAANP-AG--ATILSASNAPAVTLAERLLASFPGE-GTHKIWFGHSGSDANEAAYRAIV------KA 127 (439)
T ss_dssp CBSCHHHHHHHHHHHHSC-SC--SCSSSSEEHHHHHHHHHHHHTTTCT-TTEEEEEESSHHHHHHHHHHHHH------HH
T ss_pred CCCCHHHHHHHHHHHHhc-cC--ccccccCCHHHHHHHHHHHHhCCCC-CCCEEEEeCCHHHHHHHHHHHHH------HH
Confidence 346788999998887543 11 1112335667899999999999764 4 699999999999999998642 12
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcE--------------EEEEeCCCCC-CChHH-HHHHHHHHHhccccCCCce
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGS--------------VVEVQLPFPL-ASEEE-IINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~--------------v~~~~~~~~~-~~~~~-~~~~l~~~i~~~~~~~~~~ 191 (452)
.++++|++.++.|++.......+ .+.. +..++.+... +.... .+++|++++++. ..+++
T Consensus 128 ~~~~~vi~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~ 202 (439)
T 3dxv_A 128 TGRSGVIAFAGAYHGCTVGSMAF---SGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAV--PAGSI 202 (439)
T ss_dssp HSCCEEEEETTCCCCSSHHHHCC----------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTS--CTTCE
T ss_pred hCCCEEEEECCCCCCCcHHHHhh---cCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhc--CCCCE
Confidence 45678888888887654443221 1111 1222211000 00011 378888888411 13578
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCC----ccccccccCccEEEEcCcccCcCCCCcE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGS----IKIDVKEIGADFYVSNLHKWFFCPPSVA 262 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~----~~~~~~~~~~d~~~~s~~K~l~g~~G~G 262 (452)
++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|+ ++. ...+.....+|++ |++|++.++..+|
T Consensus 203 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~riG 279 (439)
T 3dxv_A 203 GAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGI-LVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPLS 279 (439)
T ss_dssp EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCCE
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcCCcceE
Confidence 99999999999999998 9999999999999 899999996 221 1223333457777 5569866544479
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
++++++++++. + .+.. ... +. .+...+.+..++++.+.+ +.+.++++++.+++++.|.++.
T Consensus 280 ~~~~~~~~~~~-~-~~~~---------~~~--t~-~~~~~~~aa~aal~~~~~-----~~~~~~~~~~~~~~~~~l~~~~ 340 (439)
T 3dxv_A 280 AVIAPAEILDC-A-SAFA---------MQT--LH-GNPISAAAGLAVLETIDR-----DDLPAMAERKGRLLRDGLSELA 340 (439)
T ss_dssp EEEEEHHHHTS-C-SSSS---------CCT--TT-TCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHhh-h-cCCC---------cCC--Cc-ccHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHH
Confidence 99999888775 2 1110 000 01 222333333344444432 3456677778888888877652
Q ss_pred -CCCcCCCcccccceEEEEcCCc--cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 343 -GTSLGSPPEICAAMVMVGLPSR--LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
...........+.++++.+... ....+..+..++.+.|.++ ||.+..+.. .++++|++
T Consensus 341 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~------------------~~~~iRi~ 401 (439)
T 3dxv_A 341 KRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGM------------------NGNVLEFT 401 (439)
T ss_dssp HHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEEST------------------TSCEEEEC
T ss_pred HhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCC------------------CCCEEEEE
Confidence 1111111112366777765210 0001244567888888775 999865421 24799999
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcc
Q 012991 420 HQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
++...|++|+++++++|++++++-
T Consensus 402 ~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 402 PPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 998889999999999999998754
No 192
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.92 E-value=1.3e-23 Score=208.80 Aligned_cols=321 Identities=15% Similarity=0.138 Sum_probs=202.2
Q ss_pred hhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhc
Q 012991 75 FNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRA 154 (452)
Q Consensus 75 ~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~ 154 (452)
+....+..+++++++++++|.+ ..+++++|++|+..++.++ +++||+|+++.++|+++...+..++...
T Consensus 53 ~~~~~~~~~~l~~~la~~~g~~---~~v~~~sGt~A~~~~l~~~--------~~~gd~vi~~~~~~~~~~~~~~~~~~~~ 121 (421)
T 2ctz_A 53 SRIMNPTVDVLEKRLAALEGGK---AALATASGHAAQFLALTTL--------AQAGDNIVSTPNLYGGTFNQFKVTLKRL 121 (421)
T ss_dssp BTTBCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHHH--------CCTTCEEEECSCCCHHHHHHHHTHHHHT
T ss_pred cCCCChHHHHHHHHHHHHhCCC---ceEEecCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHHc
Confidence 3334567899999999999985 3456666799999999976 4789999999999999988886656778
Q ss_pred CcEEEEE-eCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccc-cc
Q 012991 155 GGSVVEV-QLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAH-AM 232 (452)
Q Consensus 155 g~~v~~~-~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~-~~ 232 (452)
|++++.+ +.. + ++++++++ .+++++|++++++||+|.+.|+++|+++|+++|+ ++|+|+++ +.
T Consensus 122 g~~~~~~~~~~----d----~~~l~~~i------~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~-~livD~~~~~~ 186 (421)
T 2ctz_A 122 GIEVRFTSREE----R----PEEFLALT------DEKTRAWWVESIGNPALNIPDLEALAQAAREKGV-ALIVDNTFGMG 186 (421)
T ss_dssp TCEEEECCTTC----C----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTC-EEEEECGGGGG
T ss_pred CCEEEEECCCC----C----HHHHHHhh------ccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCC-EEEEECCcccc
Confidence 9999888 541 2 68899988 5789999999999999999999999999999999 89999999 87
Q ss_pred CCccccccccCccEEEEcCcccCcCCCC-cEEEEEec---Cc----cccCCCCCceeccCCCCcc--------c--ccc-
Q 012991 233 GSIKIDVKEIGADFYVSNLHKWFFCPPS-VAFLYCRK---SI----LSSDMHHPVVSHEFGNGLP--------I--ESA- 293 (452)
Q Consensus 233 g~~~~~~~~~~~d~~~~s~~K~l~g~~G-~G~l~~~~---~~----~~~~l~~~~~~~~~~~~~~--------~--~~~- 293 (452)
|... .....++|++++|+||+++++.+ +|.+++.+ ++ ... +.... ..+.+.... . ...
T Consensus 187 g~~~-~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~-l~~~~-~g~~g~~~~~~~~~~~~~~~~r~~ 263 (421)
T 2ctz_A 187 GYLL-RPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPL-LTEPQ-PGYHGLRLTEAFGELAFIVKARVD 263 (421)
T ss_dssp GTSC-CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHH-HHSCB-GGGTTBCHHHHHGGGHHHHHHHHT
T ss_pred cccC-CccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhh-hcccc-chhhhhhhhhhcchhHHHHHHHHH
Confidence 7532 22245799999999998766543 56666642 22 111 11111 000111000 0 000
Q ss_pred ---cccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC-CCc---------------cccc
Q 012991 294 ---WIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG-SPP---------------EICA 354 (452)
Q Consensus 294 ---~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~---------------~~~~ 354 (452)
..|. ...-.....++.-+. .+....++..++++++.+.|.+.+++..+ .|. ...+
T Consensus 264 ~~~~~g~--~~~~~~a~~~~~~l~----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g 337 (421)
T 2ctz_A 264 GLRDQGQ--ALGPFEAWVVLLGME----TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPG 337 (421)
T ss_dssp HHHHHCC--CCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCC
T ss_pred HHHhcCC--CCCHHHHHHHHcCcc----hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCc
Confidence 0110 001011111122222 23334555668999999999988777643 221 2357
Q ss_pred ceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCC-----CCCCCCCCCC--CCCCCCccceEEecccccCCHH
Q 012991 355 AMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAP-----KDDGQPQAGA--RDKDGIITGYARISHQVYNTLE 427 (452)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~ 427 (452)
+++.|.++. ...+...+.+.|.. +++.++.+.... ....++.... .+..+..++.+|+|++. +
T Consensus 338 ~ivsf~l~~-----~~~~~~~~~~~l~~-~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e 407 (421)
T 2ctz_A 338 AVLTFGLKG-----GYEAAKRFISRLKL-ISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----E 407 (421)
T ss_dssp SEEEEEETT-----HHHHHHHHHHTCSS-SEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----S
T ss_pred eEEEEEeCC-----CHHHHHHHHHhCCc-ceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----C
Confidence 889998851 11234556666532 455554331110 0000111111 11123446899999975 4
Q ss_pred HHHHHHHHHHHHH
Q 012991 428 DYEKFRDAVILLV 440 (452)
Q Consensus 428 di~~l~~~l~~~~ 440 (452)
|++.+++.|++.+
T Consensus 408 ~~~~li~~l~~al 420 (421)
T 2ctz_A 408 HVEDLKAELKEAL 420 (421)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 6666677666654
No 193
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=6.1e-23 Score=203.93 Aligned_cols=327 Identities=12% Similarity=0.030 Sum_probs=211.4
Q ss_pred CCCC-cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 48 FGSC-PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 48 ~~~~-p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
.++. |+.+.+++.+.+........ .....+...+++++++++++.+.+++|+||+||++|+..++.++.
T Consensus 56 lG~~~~p~v~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~------- 125 (419)
T 2eo5_A 56 LGWPSHPEVIKIGIEQMQKLAHAAA---NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVK------- 125 (419)
T ss_dssp TCBSCCHHHHHHHHHHHTTSCCCSC---SCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHH-------
T ss_pred cCCCCCHHHHHHHHHHHhhCccccc---cccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHH-------
Confidence 3444 78899999887754211010 112244567888999999998424799999999999999998652
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHH-----hcC-----cEEEEEeCCCCCCC-hH------------HHHHHHH-HHHh
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVT-----RAG-----GSVVEVQLPFPLAS-EE------------EIINEFK-KGIE 182 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~-----~~g-----~~v~~~~~~~~~~~-~~------------~~~~~l~-~~i~ 182 (452)
..+|++|++.++.|++.......+.. +.+ .+++.++.+..... .+ ..+++|+ +.++
T Consensus 126 ~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~ 205 (419)
T 2eo5_A 126 NTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFV 205 (419)
T ss_dssp TTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHH
T ss_pred HhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHh
Confidence 11289999999998865444332111 001 24666654211000 00 1278888 8885
Q ss_pred ccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcc
Q 012991 183 KGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHK 253 (452)
Q Consensus 183 ~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K 253 (452)
+.. ..+++++|+++..+|++|.+.+ +++|.++|++||+ ++|+|++|+ ++... .+.....+|+++ ++|
T Consensus 206 ~~~-~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~-~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t--~sK 281 (419)
T 2eo5_A 206 NLV-PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGI-LLVDDEVQMGLGRTGKLFAIENFNTVPDVIT--LAK 281 (419)
T ss_dssp HTC-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECG
T ss_pred hcc-CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCccCcchhhHHhcCCCCCEEE--ecc
Confidence 310 0146778887766778998766 8999999999999 899999997 44321 222234567774 569
Q ss_pred cCcCC-CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 012991 254 WFFCP-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL 332 (452)
Q Consensus 254 ~l~g~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~ 332 (452)
+++++ .++|+++++++++ . + .... + .+.+.+...+.+..++++.+. .+.++++++++
T Consensus 282 ~~~~G~~riG~~~~~~~~~-~-~-~~~~----~--------~t~~~n~~~~~aa~aal~~~~-------~~~~~~~~~~~ 339 (419)
T 2eo5_A 282 ALGGGIMPIGATIFRKDLD-F-K-PGMH----S--------NTFGGNALACAIGSKVIDIVK-------DLLPHVNEIGK 339 (419)
T ss_dssp GGGTTTSCCEEEEEEGGGC-C-C-------------------CCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cccCCccceEEEEEchHhh-c-C-Cccc----C--------CCCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 87765 6689999998877 6 3 1110 0 011223334444444555433 26788889999
Q ss_pred HHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 333 KMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 333 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
++.+.|.++ +.. ....+.++++.+.. +..... +.+.|.+ .||.+..+.
T Consensus 340 ~l~~~L~~~--~~~---~~~~g~~~~i~~~~-----~~~~~~-~~~~l~~-~Gv~v~~~~-------------------- 387 (419)
T 2eo5_A 340 IFAEELQGL--ADD---VRGIGLAWGLEYNE-----KKVRDR-IIGESFK-RGLLLLPAG-------------------- 387 (419)
T ss_dssp HHHHHHTTS--SSE---EEEETTEEEEECSC-----HHHHHH-HHHHHHH-TTEECEEET--------------------
T ss_pred HHHHHHHHh--hhh---eEeeeEEEEEEEec-----CccHHH-HHHHHHH-CCCEEecCC--------------------
Confidence 999988664 211 12236788887730 122355 8888876 599986421
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+++|++++..+|++|+++++++|+++++.
T Consensus 388 ~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 388 RSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 368999998888999999999999998754
No 194
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.92 E-value=1.5e-23 Score=210.38 Aligned_cols=340 Identities=11% Similarity=0.063 Sum_probs=221.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+.... ... +.....+...+++++++++++.+ .++++|++||++|+..++..+...+. ..
T Consensus 88 ~lGh~~p~v~~A~~~~~~~~~-~~~--~~~~~~~~~~~L~e~la~~~~~~-~~~v~~~~sGseA~~~Alk~a~~~~~-~~ 162 (457)
T 3tfu_A 88 IHGHGHPALDQALTTQLRVMN-HVM--FGGLTHEPAARLAKLLVDITPAG-LDTVFFSDSGSVSVEVAAKMALQYWR-GR 162 (457)
T ss_dssp TTCBTCHHHHHHHHHHHHHCS-CCC--SSSEECHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHHHHHHH-HT
T ss_pred ccCCCCHHHHHHHHHHHHhcc-Ccc--ccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCcHHHHHHHHHHHHHHHHH-hc
Confidence 345678889999998876531 111 11223566789999999999864 57999999999999999987632110 00
Q ss_pred CCCC-CEEEEeCCcchhHHHHHHHHH----------HhcCcEEEEEeCCCCCCChH-HHHHHHHHHHhccccCCCceEEE
Q 012991 127 FHRN-DTVLMLHCAFQAVKKSIQAYV----------TRAGGSVVEVQLPFPLASEE-EIINEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 127 ~~~g-~~Vl~~~~~~~s~~~~~~~~a----------~~~g~~v~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~~~~~lv 194 (452)
-.+| ++|++.++.|++.......+. ......+..++. +.+... ..+++|++++++. .+++++|
T Consensus 163 g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~d~~~le~~l~~~---~~~~aav 237 (457)
T 3tfu_A 163 GLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQ--VPRDYDPAYSAAFEAQLAQH---AGELAAV 237 (457)
T ss_dssp TCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECC--CCSSCCHHHHHHHHHHHHHH---GGGEEEE
T ss_pred CCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecC--CCcccCHHHHHHHHHHHHhC---CCCEEEE
Confidence 1144 589998888877543332110 001113334433 222222 2388899988643 3578999
Q ss_pred EEec-cCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-CCcEE
Q 012991 195 IIDH-ITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-PSVAF 263 (452)
Q Consensus 195 ~~~~-~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~G~G~ 263 (452)
+++. ++|++|.+.+ +++|.++|++||+ ++|+|++++ +|... .+.....+|++++ +|.+.|+ ..+|+
T Consensus 238 i~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gi-llI~DEv~~g~gr~G~~~a~~~~~~~pdiit~--sK~l~gG~~~lG~ 314 (457)
T 3tfu_A 238 VVEPVVQGAGGMRFHDPRYLHDLRDICRRYEV-LLIFDEIATGFGRTGALFAADHAGVSPDIMCV--GKALTGGYLSLAA 314 (457)
T ss_dssp EECSSEECTTTCEECCTHHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCCEE
T ss_pred EEeCCCcCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEcCccCCccccchhHhHhcCCCceEEEE--ChhhhCCCcceEE
Confidence 9999 9999999886 8999999999999 899999986 43221 2222335788855 5987775 25899
Q ss_pred EEEecCccccCCC--CCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 012991 264 LYCRKSILSSDMH--HPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANA 341 (452)
Q Consensus 264 l~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 341 (452)
+++++++.+. +. .+. ....+ .+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|.++
T Consensus 315 v~~~~~i~~~-~~~~~~~-~~~~~--------~t~~~n~~a~aaa~aaL~~~~~-----~~~~~~~~~~~~~l~~~L~~l 379 (457)
T 3tfu_A 315 TLCTADVAHT-ISAGAAG-ALMHG--------PTFMANPLACAVSVASVELLLG-----QDWRTRITELAAGLTAGLDTA 379 (457)
T ss_dssp EEEEHHHHHH-HHHSSSC-SCCCC--------CTTTTCHHHHHHHHHHHHHHHT-----SCHHHHHHHHHHHHHHHHGGG
T ss_pred EEEcHHHHHH-hhccCCC-ceeEe--------cCCCcCHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHH
Confidence 9999888765 21 000 00000 0112233333444445555543 345777888889999998876
Q ss_pred cCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccc
Q 012991 342 WGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQ 421 (452)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 421 (452)
............+.++++.++ ...+..++.+.|.++ ||.++. .++++|++++
T Consensus 380 ~~~~~v~~vr~~G~~~~i~l~------~~~~~~~~~~~l~~~-Gv~v~~---------------------~~~~lRi~p~ 431 (457)
T 3tfu_A 380 RALPAVTDVRVCGAIGVIECD------RPVDLAVATPAALDR-GVWLRP---------------------FRNLVYAMPP 431 (457)
T ss_dssp GGSTTEEEEEECSSCEEEEES------SCCCHHHHHHHHHHT-TEECCC---------------------BTTEEEECCC
T ss_pred hcCCCeeeeecCCeEEEEEEC------CcccHHHHHHHHHHC-CeEEEe---------------------cCCEEEEECC
Confidence 322222121223678888776 234567899999875 999852 1368999998
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 012991 422 VYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 422 ~~~t~~di~~l~~~l~~~~~~ 442 (452)
...|++|+++++++|++++++
T Consensus 432 ~~~t~eei~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 432 YICTPAEITQITSAMVEVARL 452 (457)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999875
No 195
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.91 E-value=4.7e-24 Score=211.49 Aligned_cols=342 Identities=11% Similarity=0.015 Sum_probs=220.3
Q ss_pred HHHhhhcc-CCCCeEEeccCCC------CCCcHHHHHHHHH-HHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCC-C--
Q 012991 28 EIRDEFSH-HQHGVARINNGSF------GSCPKSVLADQQK-WQLKFLQQPDDFYFNSLRKGILESRAAVKDLINA-D-- 96 (452)
Q Consensus 28 ~ir~~~~~-~~~~~~~l~~~~~------~~~p~~v~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~-- 96 (452)
.+.+.+.. .+++++.|..+.+ .+.++.+.+++.+ .+.. + ....|....+..++++.++++++. .
T Consensus 18 ~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~----~-~~~~y~~~~g~~~lr~~ia~~~~~~~~~ 92 (412)
T 1yaa_A 18 GIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS----S-YNHEYLGITGLPSLTSNAAKIIFGTQSD 92 (412)
T ss_dssp HHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT----T-CCCCCCCTTCCHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc----c-cccCCCCCCCcHHHHHHHHHHHhcCCCC
Confidence 34444432 2467888877653 2466778888887 6531 1 111233344567889999988832 1
Q ss_pred --CCCcEEE--ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 97 --DVGEISL--VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 97 --~~~~i~~--t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
++++|++ |+||++|+.+++..+. .+.+||+|++++|+|++....+ +..|.+++.++...+ +++.
T Consensus 93 ~~~~~~i~~~~t~g~~~a~~~~~~~~~------~~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~~--~~~~ 160 (412)
T 1yaa_A 93 ALQEDRVISVQSLSGTGALHISAKFFS------KFFPDKLVYLSKPTWANHMAIF----ENQGLKTATYPYWAN--ETKS 160 (412)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHHH------HHCTTCCEEEEESCCTTHHHHH----HTTTCCEEEEECEET--TTTE
T ss_pred CCCcceEEEEeccchHhHHHHHHHHHH------HhCCCCEEEEeCCCCccHHHHH----HHcCceEEEEeeecC--CCCc
Confidence 2579999 9999999998853321 1368999999999999876554 456999999865101 1223
Q ss_pred H-HHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc--------cc-cc
Q 012991 173 I-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI--------KI-DV 239 (452)
Q Consensus 173 ~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~--------~~-~~ 239 (452)
+ +++|++++++. ...+.++++++++||||.+++ +++|+++|++||+ ++|+|++|+.... ++ ++
T Consensus 161 ~d~~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~ 236 (412)
T 1yaa_A 161 LDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNH-IALFDTAYQGFATGDLDKDAYAVRLG 236 (412)
T ss_dssp ECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTTSSSCHHHHTHHHHHH
T ss_pred cCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEecccccccCCcccchhHHHHHH
Confidence 3 88999988642 123566677999999999987 4568889999999 8999999853211 12 22
Q ss_pred cccC----ccEEEEcCcccCcCCCC--cEEEE--E-----ecC----ccccCCCCCceeccCCCCcccccccccccCccc
Q 012991 240 KEIG----ADFYVSNLHKWFFCPPS--VAFLY--C-----RKS----ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSA 302 (452)
Q Consensus 240 ~~~~----~d~~~~s~~K~l~g~~G--~G~l~--~-----~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (452)
...+ .++++.|++|. +|++| +|+++ . +++ ++.. + ... ......+++...
T Consensus 237 ~~~~~~~~~~i~~~s~sK~-~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~-l-~~~-----------~~~~~~~~~~~~ 302 (412)
T 1yaa_A 237 VEKLSTVSPVFVCQSFAKN-AGMYGERVGCFHLALTKQAQNKTIKPAVTSQ-L-AKI-----------IRSEVSNPPAYG 302 (412)
T ss_dssp HHHTTTTCCEEEEEECTTT-SCCGGGCEEEEEEECCSCTTHHHHHHHHHHH-H-HHH-----------HHTTTSSCCHHH
T ss_pred HhcCCCCcceEEEeccCCC-CCCcCCcceEEEEEecCCCCCHHHHHHHHHH-H-HHH-----------HhhccCCCChHH
Confidence 2223 35788899996 67777 68887 5 444 4432 1 000 000112334444
Q ss_pred cccHHHHHHHHH---HhhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHH
Q 012991 303 QLVIPSAVTFVS---RFEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRL 376 (452)
Q Consensus 303 ~~~~~~al~~~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (452)
+.++.++++... .+....+.++++++++++++.+.|.+++ ++++..+.. +.++++.+ +...+
T Consensus 303 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~ 370 (412)
T 1yaa_A 303 AKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQC--GMFSFTGL----------TPQMV 370 (412)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCC--SSEEECCC----------CHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCc--eEEEeeCC----------CHHHH
Confidence 444444554321 0012477888899999999999999874 366543332 44444322 33456
Q ss_pred HHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 377 RGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 377 ~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...| +++||.+. .++|||++. .+++++++++++|+++++.
T Consensus 371 ~~~l-~~~gi~v~------------------------~~~Ris~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 371 KRLE-ETHAVYLV------------------------ASGRASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp HHHH-HHHCEECC------------------------TTSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred HHHH-HhCCEEec------------------------cCcEEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence 4555 44599984 157999985 5899999999999998863
No 196
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.91 E-value=2.9e-23 Score=204.34 Aligned_cols=309 Identities=16% Similarity=0.138 Sum_probs=198.9
Q ss_pred hhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHH-HH
Q 012991 74 YFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAY-VT 152 (452)
Q Consensus 74 ~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~-a~ 152 (452)
|++...+..++++++++++++.+ .+++++||++|+..+ .++ +++||+|+++++.|++.+..+..+ ..
T Consensus 61 y~r~~~p~~~~l~~~la~l~g~~---~~~~~~sG~~Ai~~~-~~l--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~ 128 (400)
T 3nmy_A 61 YSRTHNPTRFAYERCVAALEGGT---RAFAFASGMAATSTV-MEL--------LDAGSHVVAMDDLYGGTFRLFERVRRR 128 (400)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS---EEEEESSHHHHHHHH-HTT--------SCTTCEEEEESSCCHHHHHHHHHTHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCC---CEEEecCHHHHHHHH-HHH--------cCCCCEEEEeCCCchHHHHHHHHhhHh
Confidence 44555677899999999999984 677788889999874 433 589999999999999888777665 56
Q ss_pred hcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEeccccc
Q 012991 153 RAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAM 232 (452)
Q Consensus 153 ~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~ 232 (452)
+.|++++.++. ++ ++++++++ .+++++|++++++||+|.+.|+++|+++|++||+ ++|+|++++.
T Consensus 129 ~~g~~~~~v~~----~d----~~~l~~~i------~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~-~livDe~~~~ 193 (400)
T 3nmy_A 129 TAGLDFSFVDL----TD----PAAFKAAI------RADTKMVWIETPTNPMLKLVDIAAIAVIARKHGL-LTVVDNTFAS 193 (400)
T ss_dssp HHCCEEEEECT----TS----HHHHHHHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTC-EEEEECTTTH
T ss_pred hcCeEEEEECC----CC----HHHHHHHh------ccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCC-EEEEECCCcc
Confidence 77999999943 33 68899998 5789999999999999999999999999999999 8999999986
Q ss_pred CCccccccccCccEEEEcCcccCcCCC-C-cE-EEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHH
Q 012991 233 GSIKIDVKEIGADFYVSNLHKWFFCPP-S-VA-FLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPS 308 (452)
Q Consensus 233 g~~~~~~~~~~~d~~~~s~~K~l~g~~-G-~G-~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (452)
+.... ...+++|+++.|++|+++|+. . .| +++.+ +++.+. + ... . .......+ ......
T Consensus 194 ~~~~~-~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~-l-~~~-~----------~~~g~~~~---~~~a~~ 256 (400)
T 3nmy_A 194 PMLQR-PLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQ-M-AFL-Q----------NSIGGVQG---PFDSFL 256 (400)
T ss_dssp HHHCC-GGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHH-H-HHH-H----------HHHCCBCC---HHHHHH
T ss_pred cccCC-hhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHH-H-HHH-H----------HhcCCCCC---HHHHHH
Confidence 54321 122479999999999877652 1 25 44443 334333 1 000 0 00001111 112222
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCc--------------ccccceEEEEcCCccccCChhhH
Q 012991 309 AVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTS-LGSPP--------------EICAAMVMVGLPSRLRVMGEDDA 373 (452)
Q Consensus 309 al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 373 (452)
+++.++ .+....++..+++.++.+.|.+.+.+. +..|. ...+++++|.++. +....
T Consensus 257 ~l~~l~----~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~-----~~~~~ 327 (400)
T 3nmy_A 257 ALRGLK----TLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG-----GFDAA 327 (400)
T ss_dssp HHHHHT----THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-----HHHHH
T ss_pred HHHhHh----HHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC-----cHHHH
Confidence 333333 345556677888889999998776553 32221 2347899998861 12345
Q ss_pred HHHHHHHhhhcceEeeecccCC-----CCCCCCCCCC--CCCCCCccceEEecccccCCHHHHHHHHHHH
Q 012991 374 LRLRGHLRVRFGVEVPIHYQAP-----KDDGQPQAGA--RDKDGIITGYARISHQVYNTLEDYEKFRDAV 436 (452)
Q Consensus 374 ~~l~~~L~~~~gI~v~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 436 (452)
..+.+.|. .+++.+..+.... ..-.+..... ..+.+..++.+|+|++..+.++.++.+..+|
T Consensus 328 ~~~~~~l~-~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al 396 (400)
T 3nmy_A 328 KRFCEKTE-LFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERAL 396 (400)
T ss_dssp HHHHHHCS-SSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHcCC-cceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHH
Confidence 66777774 3455554322110 0000000000 0011345789999998654444344443333
No 197
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.91 E-value=8.2e-23 Score=203.72 Aligned_cols=358 Identities=10% Similarity=0.026 Sum_probs=205.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+.... .... .....+...+++++++++++.+ .++|+||+||++|+..++.++...+.+..
T Consensus 42 ~lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~al~~~~~~~~~~g 117 (430)
T 3i4j_A 42 NIGHGRAEVGERMAAQAARLP-FVHG--SQFSSDVLEEYAGRLARFVGLP-TFRFWAVSGGSEATESAVKLARQYHVERG 117 (430)
T ss_dssp TTCBCCHHHHHHHHHHHHHCC-CCCT--TTCEEHHHHHHHHHHHHHTTCT-TCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHHHHHHhcc-cccc--cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHHHHHHHhcC
Confidence 345557889999998876531 1111 1234566788999999999875 68999999999999999987642111000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhcCc-----------EEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEE
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRAGG-----------SVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLA 194 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-----------~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv 194 (452)
..++++|++.++.|++.......+...... .+..++.+.... .+.. +++|++.+++.. .+++++|
T Consensus 118 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~le~~l~~~~--~~~~~~v 194 (430)
T 3i4j_A 118 EPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR-NGAEDAEGLRALLEREG--PETVAAF 194 (430)
T ss_dssp CTTCCEEEEETTC-------------------------CGGGSCEECCCCTTS-CHHHHHTHHHHHHHHHC--GGGEEEE
T ss_pred CCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccc-hhhHHHHHHHHHHHhcC--CCCEEEE
Confidence 134689999999998765443322111000 222332211000 0233 788888886420 1567888
Q ss_pred EEeccCC-CCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----ccccc-ccCccEEEEcCcccCcCC-CCcE
Q 012991 195 IIDHITS-MPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVK-EIGADFYVSNLHKWFFCP-PSVA 262 (452)
Q Consensus 195 ~~~~~~n-~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~-~~~~d~~~~s~~K~l~g~-~G~G 262 (452)
+++.+++ ++|.+.+ +++|.++|++||+ ++|+|++|+ ++.. ..+.. ...+|++++ +|++.++ ..+|
T Consensus 195 i~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~--sK~l~~G~~r~G 271 (430)
T 3i4j_A 195 MAEPVVGASDAALAPAPGYYERVRDICDEAGI-IFIADEVMSGMGRCGSPLALSRWSGVTPDIAVL--GKGLAAGYAPLA 271 (430)
T ss_dssp EECSSCCGGGTTCCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEE--CGGGTTTSSCCE
T ss_pred EEcCcccCcCCcccCCHHHHHHHHHHHHHcCC-EEEEechhhCCCcccchhhhhhhcCCCCcEEEE--cccccCCccccE
Confidence 8888888 8998877 8999999999999 899999987 4322 11222 334677765 5986653 3479
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
++++++++++. +.... . ......+.+.+...+.+..++++.+.+ +.+.++++++.+++++.|.++.
T Consensus 272 ~~~~~~~i~~~-~~~~~-~-------~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~~~~~l~~~~ 337 (430)
T 3i4j_A 272 GLLAAPQVYET-VMGGS-G-------AFMHGFTYAGHPVSVAAGLSVLDIVER-----EDLTGAAKERGAQLLAGLQALQ 337 (430)
T ss_dssp EEEECHHHHHH-HHHTT-C-------BCCCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHH-HhccC-C-------cccccCCCCCCHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHHHHH
Confidence 99998887765 21100 0 000000112233344444445555443 3356666677777777776542
Q ss_pred -CCCcCCCcccccceEEEEcCCccccCC---hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEe
Q 012991 343 -GTSLGSPPEICAAMVMVGLPSRLRVMG---EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARI 418 (452)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 418 (452)
...........+.++++.+.+...... .....++.+.|.++ ||.+..+..+.. +..++++|+
T Consensus 338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~-------------~~~~~~iRi 403 (430)
T 3i4j_A 338 ARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKR-GLITYPGSGAEP-------------NGRGDHLLL 403 (430)
T ss_dssp HHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHT-TEECC------------------------CEEEE
T ss_pred HhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhC-CCEEEecccccC-------------CCCCCEEEE
Confidence 111111111236677777642100000 11246788888765 999875422211 123578999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhc
Q 012991 419 SHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 419 s~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++...|++++++++++|++++++
T Consensus 404 ~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 404 GPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999888999999999999999864
No 198
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.91 E-value=1.2e-22 Score=203.77 Aligned_cols=357 Identities=9% Similarity=0.063 Sum_probs=218.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|+.++.|.+++.+.+.... . .......+...+++++++++++.+ .+ ++||+|||+|+..++.++...+....
T Consensus 62 ~lG~~~p~v~~A~~~~~~~~~-~---~~~~~~~~~~~~la~~l~~~~~~~-~~-v~~~~ggseA~~~al~~~~~~~~~~g 135 (452)
T 3n5m_A 62 NSGYGRKELAEAAYKQLQTLS-Y---FPMSQSHEPAIKLAEKLNEWLGGE-YV-IFFSNSGSEANETAFKIARQYYAQKG 135 (452)
T ss_dssp TTCBCCHHHHHHHHHHHTTCC-C---CCTTSEEHHHHHHHHHHHHHHTSC-EE-EEEESSHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHhcC-C---cccccCCHHHHHHHHHHHHhCCCC-ce-EEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 455677889999998775421 1 111234567789999999999875 45 99999999999999997642110000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh---------cCcEEEEEeCCC----CCCC----hHHH-HHHHHHHHhccccCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR---------AGGSVVEVQLPF----PLAS----EEEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~---------~g~~v~~~~~~~----~~~~----~~~~-~~~l~~~i~~~~~~~ 188 (452)
..++++|++.++.|++.......+... ....+..++.+. +.++ .... +++|++.+++. +.
T Consensus 136 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~ 213 (452)
T 3n5m_A 136 EPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE--LS 213 (452)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH--CG
T ss_pred CCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc--CC
Confidence 016789999999998754333221000 001234443211 1111 1112 68888888521 12
Q ss_pred CceEEEEEecc-CCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC
Q 012991 189 KMIRLAIIDHI-TSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 189 ~~~~lv~~~~~-~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
+++++|+++.+ +| +|.+.| +++|.++|++||+ ++|+|++|+ +|.. ..+.....+|++++| |++.++
T Consensus 214 ~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G 289 (452)
T 3n5m_A 214 ETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGA-LLISDEVICGFGRTGKAFGFMNYDVKPDIITMA--KGITSA 289 (452)
T ss_dssp GGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTT
T ss_pred CCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCC-EEEEecchhCCCcccccchhhhcCCCCCEEeec--ccccCC
Confidence 57889999988 89 999887 9999999999999 899999987 4322 123333357877655 876655
Q ss_pred -CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 259 -PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 259 -~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
.++|++++++++++. +.... ..... .. ..+.+.+..++.+..++++.+.+ +.+.++++++.+++++.
T Consensus 290 ~~~ig~~~~~~~i~~~-~~~~~----~~~~~-~~-~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~ 357 (452)
T 3n5m_A 290 YLPLSATAVKREIYEA-FKGKG----EYEFF-RH-INTFGGNPAACALALKNLEIIEN-----ENLIERSAQMGSLLLEQ 357 (452)
T ss_dssp SSCCEEEEEEHHHHGG-GCSSS----TTCSC-CC-CCSSTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHH
T ss_pred CcceEEEEECHHHHHH-Hhhcc----CCCCc-cc-cCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHH
Confidence 568999999888775 21100 00000 00 00112233333344445554442 34567778888888888
Q ss_pred HHHH-cCCCcCCCcccccceEEEEcCCccccCC---hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 338 LANA-WGTSLGSPPEICAAMVMVGLPSRLRVMG---EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 338 L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
|.++ ............+.++++.+........ .....++.+.|.++ ||.+..+..+.. ..+
T Consensus 358 L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~~--------------~~~ 422 (452)
T 3n5m_A 358 LKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEK-GLIIGRNGMTTA--------------GYN 422 (452)
T ss_dssp HHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHT-TEECEECTTSST--------------TCC
T ss_pred HHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHC-CcEEeecCcccC--------------CCC
Confidence 8765 2222211112235566665531100000 11235688888765 999976544321 235
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++...|++||++++++|++++++
T Consensus 423 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 423 NILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 79999998889999999999999998753
No 199
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.91 E-value=5.8e-25 Score=216.44 Aligned_cols=329 Identities=12% Similarity=0.015 Sum_probs=212.8
Q ss_pred CCCeEEeccCCCC-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHH-----HHHHHHHHhHhCC-----CCCCcEEEec
Q 012991 37 QHGVARINNGSFG-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGI-----LESRAAVKDLINA-----DDVGEISLVD 105 (452)
Q Consensus 37 ~~~~~~l~~~~~~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~la~~~~~-----~~~~~i~~t~ 105 (452)
+..+++|+.+.+. +.|+.+.+++.+.... ........|....+. .++|++++++++. ...++|++|+
T Consensus 21 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~--~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~ 98 (391)
T 3bwn_A 21 SDFVVNLDHGDPTAYEEYWRKMGDRCTVTI--RGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGT 98 (391)
T ss_dssp TTSCEECSSCCCGGGHHHHHHTGGGSCEEE--CTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEE
T ss_pred CCCeeEcCCCCCCCCCCHHHHHhHHHHhhc--CccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeC
Confidence 4668999988776 3333344443221100 000111223334444 8899999998872 2136899999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCC----EEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHH
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRND----TVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGI 181 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~----~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i 181 (452)
|+++++.+++.++ +++|| +|++++|+|.+....+ +..|.+++.+++ +. +. +
T Consensus 99 G~~~al~~~~~~l--------~~~Gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~----d~-----~~----l 153 (391)
T 3bwn_A 99 GSTQLCQAAVHAL--------SSLARSQPVSVVAAAPFYSTYVEET----TYVRSGMYKWEG----DA-----WG----F 153 (391)
T ss_dssp HHHHHHHHHHHHH--------HHTSSSSSEEEEECSSCCTHHHHHH----HTTCBTTEEEEE----ES-----TT----C
T ss_pred ChHHHHHHHHHHh--------cCCCCCCcceEEEcCCCchhHHHHH----HHcCCeEEEecC----CH-----HH----c
Confidence 9999999999987 37889 9999999999875554 456888887754 21 11 1
Q ss_pred hccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-cccccccCccEEEEcCcccCcCCCC
Q 012991 182 EKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 182 ~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+ .+++++|++++++||||.+++ +|++.++++++ ++|+|++++.+.. ++.. ..+.++++.|+||. +|++|
T Consensus 154 ~-----~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~-~ii~De~y~~~~~~~l~~-~~~~~i~~~S~SK~-~g~~G 223 (391)
T 3bwn_A 154 D-----KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEA-KVIHDFAYYWPHYTPITR-RQDHDIMLFTFSKI-TGHAG 223 (391)
T ss_dssp C-----CCSCEEEEEESSCTTTCCCCC--CCC-----CCC-EEEEECTTCSTTTSCCCC-CBCCSEEEEEHHHH-HSCGG
T ss_pred C-----CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCC-EEEEeCCCCCCCCCcccc-CCCCeEEEEechhh-cCCCc
Confidence 1 257899999999999999996 55442222339 7999999985421 2222 23568999999995 78888
Q ss_pred --cEEEEE-ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHH-------hhcCHHHHHHHHHHH
Q 012991 261 --VAFLYC-RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSR-------FEGGIDGIMQRNHEQ 330 (452)
Q Consensus 261 --~G~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-------~~~g~~~~~~~~~~~ 330 (452)
+|++++ +++++.. + ... ......+.+...+.++..+++.... ....++.++++++++
T Consensus 224 lRiG~~~~~~~~l~~~-l-~~~-----------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (391)
T 3bwn_A 224 SRIGWALVKDKEVAKK-M-VEY-----------IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNR 290 (391)
T ss_dssp GCEEEEEECCHHHHHH-H-HHH-----------HHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHH
T ss_pred cceEEEEecCHHHHHH-H-HHH-----------hcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHH
Confidence 599987 6666654 1 111 0001123344444455555543321 012477888899999
Q ss_pred HHHHHHHHHHHcCCCcCCCccc-----------ccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCC
Q 012991 331 ALKMARMLANAWGTSLGSPPEI-----------CAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDG 399 (452)
Q Consensus 331 ~~~l~~~L~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~ 399 (452)
++++.+.|.+++++.+..+... .+.++|+.++. ...+.+.|.+ +||.+.++..+.
T Consensus 291 ~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~---------~~~~~~~l~~-~gV~v~pg~~fg---- 356 (391)
T 3bwn_A 291 WEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE---------ETDLVSELRR-HKVMSRAGERCG---- 356 (391)
T ss_dssp HHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS---------SCCHHHHHHH-TTEECEEGGGGT----
T ss_pred HHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc---------HHHHHHHHHH-CCEEEccCCCCC----
Confidence 9999999988766665544321 13477887751 1245566654 699998876652
Q ss_pred CCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 400 QPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 400 ~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+++|+|++. +++++++++++|+++++.
T Consensus 357 -----------~~~~~iRis~~~--~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 357 -----------SDKKHVRVSMLS--REDVFNVFLERLANMKLI 386 (391)
T ss_dssp -----------CCTTEEEEESCS--CHHHHHHHHHHHHSCC--
T ss_pred -----------CCCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 235799999984 899999999999987754
No 200
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.91 E-value=2.1e-24 Score=209.78 Aligned_cols=297 Identities=14% Similarity=0.061 Sum_probs=193.4
Q ss_pred hhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC--EEEEeCCcchhHHHHHHHHHHh
Q 012991 76 NSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND--TVLMLHCAFQAVKKSIQAYVTR 153 (452)
Q Consensus 76 ~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~--~Vl~~~~~~~s~~~~~~~~a~~ 153 (452)
+...+...+++++++++++.+ ..++++|||+|+.+++.++. .+|| .|+++.+.|.+.+..... +..
T Consensus 43 y~~~~~~~~l~~~la~~~~~~---~~i~~~~G~~a~~~al~~~~--------~~gd~~~vi~~~~~~~~~~~~~~~-~~~ 110 (357)
T 3lws_A 43 YGTGAIIEPFEQKFADVLGMD---DAVFFPSGTMAQQVALRIWS--------DETDNRTVAYHPLCHLEIHEQDGL-KEL 110 (357)
T ss_dssp TTEETTHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHHH--------HHHTCCEEEECTTCHHHHSSTTHH-HHH
T ss_pred ccCChHHHHHHHHHHHHhCCC---cEEEecCcHHHHHHHHHHHh--------hcCCCcEEEecccceeeeeccchh-hhc
Confidence 334566889999999999985 34666889999999888763 5666 777777777665432111 344
Q ss_pred cCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-ccccc---HHHHHHHHHHcCCCEEEEec
Q 012991 154 AGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVIP---VRKLVKICRDEGVDQVFVDA 228 (452)
Q Consensus 154 ~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~~~ivD~ 228 (452)
.|.+++.++. + ++.+ +++++++. ++++|++++++||+ |.++| +++|+++|++||+ ++|+|+
T Consensus 111 ~g~~~~~v~~----~-~~~~d~~~l~~~~--------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~-~li~D~ 176 (357)
T 3lws_A 111 HPIETILVGA----A-DRLMTLDEIKALP--------DIACLLLELPQREIGGVAPAFSELETISRYCRERGI-RLHLDG 176 (357)
T ss_dssp SSCEEEECSC----T-TSCCCHHHHHTCC--------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTC-EEEEEE
T ss_pred cCcEEEEecC----C-CCCcCHHHHhcCc--------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCC-EEEEEC
Confidence 5888888742 2 2233 77777652 28899999999998 99886 7789999999999 799999
Q ss_pred cccc------CCccccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccc
Q 012991 229 AHAM------GSIKIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSA 302 (452)
Q Consensus 229 a~~~------g~~~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (452)
++.. +....++. ...|+++.|+||++.||.| |+++.++++++. + ... ...++ +......
T Consensus 177 a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~-~-~~~-~~~~~----------~~~~~~~ 241 (357)
T 3lws_A 177 ARLFEMLPYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQT-A-RIW-KRRYG----------GDLISLY 241 (357)
T ss_dssp TTHHHHHHHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHHH-H-HHH-HHHTT----------CCCSCCH
T ss_pred chhhhhhhhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHHH-H-HHH-HHHhc----------CCcccch
Confidence 8762 11111111 2478899999998778888 998888877765 1 111 00011 1111111
Q ss_pred cccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCc-CCCcccccceEEEEcCCccccCChhhHHHHHHHHh
Q 012991 303 QLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSL-GSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLR 381 (452)
Q Consensus 303 ~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 381 (452)
..+. +++..+... .+. .++..++++++.+.|.+++++++ ..++. ++++++.++.. ...+..++.+.|.
T Consensus 242 ~~~~-~~~~~l~~~---~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~l~ 310 (357)
T 3lws_A 242 PYIV-SADYYYELR---KDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPV--SNMFHLHFDGQ----AADISPKLEQVQE 310 (357)
T ss_dssp HHHH-HHHHHHHHH---TTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCS--SSEEEEEEESC----HHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHH---HHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCc--ceEEEEEecCC----hHHHHHHHHHHHH
Confidence 1111 122222221 122 23346778889999998888876 34443 67888887621 0134677888887
Q ss_pred hhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEeccccc---CCHHHHHHHHHHHHHHH
Q 012991 382 VRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVY---NTLEDYEKFRDAVILLV 440 (452)
Q Consensus 382 ~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~---~t~~di~~l~~~l~~~~ 440 (452)
++ ||.++.+..+ .....++|++++.. .+.++++..++.|++.+
T Consensus 311 ~~-Gi~v~~g~~~---------------~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 311 ET-GLGFVGYLVD---------------KDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HH-CEESCSCCEE---------------CSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred hc-CeEEeccccc---------------CCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 65 9999766433 12235899988633 47888888888887754
No 201
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.91 E-value=3.9e-22 Score=199.99 Aligned_cols=341 Identities=12% Similarity=0.097 Sum_probs=214.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|+.++.|.+++.+.+.... ...+.....+...++.++++++++.+..++++||+|||+|+..++..+. . .
T Consensus 78 lGh~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~-~-----~ 148 (453)
T 4ffc_A 78 VGASHPAVAAAIADQATHFT---HTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVAR-L-----A 148 (453)
T ss_dssp TCTTCHHHHHHHHHHHHHCS---CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHH-H-----H
T ss_pred CCCCCHHHHHHHHHHHHhcc---ccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHH-H-----h
Confidence 45668889999998876531 1111223456778899999999986434799999999999999997552 1 1
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhc----------CcEEEEEeCCCCCCC------hH--HH-HHHHHHHHhccccCC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRA----------GGSVVEVQLPFPLAS------EE--EI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~----------g~~v~~~~~~~~~~~------~~--~~-~~~l~~~i~~~~~~~ 188 (452)
..+++|++.++.|++.......+.... ...+..++.+.+..+ .. .. .+.|++.+. .
T Consensus 149 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~-----~ 223 (453)
T 4ffc_A 149 TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG-----A 223 (453)
T ss_dssp HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC-----G
T ss_pred cCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC-----C
Confidence 346799999999987655443321000 114555654322211 11 11 466666662 2
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
.++++|+++..+++.|.+.+ +++|.++|++||+ ++|+|++|+ +|... .+.....+|++++| |++.++.
T Consensus 224 ~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~s--K~~~~G~ 300 (453)
T 4ffc_A 224 QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGV-VFIADEVQTGFARTGAWFASEHEGIVPDIVTMA--KGIAGGM 300 (453)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTS
T ss_pred CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC-EEEEecCccCCCcccccchhhhcCCCcchHhhh--hhhcCCc
Confidence 45677787777666777766 8999999999999 899999986 33221 12223356777654 9876555
Q ss_pred CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLA 339 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~ 339 (452)
.+|++++++++++. + .+.. .+ .+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|.
T Consensus 301 ~~G~~~~~~~i~~~-~-~~~~---~~--------~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~l~ 362 (453)
T 4ffc_A 301 PLSAVTGRAELMDA-V-YAGG---LG--------GTYGGNPVTCAAAVAALGVMRE-----LDLPARARAIEASVTSRLS 362 (453)
T ss_dssp SCEEEEEEHHHHTT-S-CTTS---SC--------CSSSSCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECHHHHhh-h-cccC---cC--------CCCCcCHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHH
Confidence 58999999888775 2 2110 00 0112233333344445555442 3456666777777777776
Q ss_pred HHc-CCCcCCCcccccceEEEEcCCc-cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEE
Q 012991 340 NAW-GTSLGSPPEICAAMVMVGLPSR-LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYAR 417 (452)
Q Consensus 340 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 417 (452)
++. ...........+.++++.+.+. ....+.....++.+.|.++ ||.+..+.. .++++|
T Consensus 363 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~------------------~~~~iR 423 (453)
T 4ffc_A 363 ALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGT------------------FGNVIR 423 (453)
T ss_dssp HHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECCEECT------------------TSCEEE
T ss_pred HHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhC-CCEEecCCC------------------CCCEEE
Confidence 541 1211111222366777776320 0001234567888888775 999865321 236899
Q ss_pred ecccccCCHHHHHHHHHHHHHHHhc
Q 012991 418 ISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 418 is~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++...+++|+++++++|++++++
T Consensus 424 i~~~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 424 LLPPLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999888999999999999999865
No 202
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.90 E-value=4.1e-22 Score=199.68 Aligned_cols=353 Identities=10% Similarity=0.078 Sum_probs=209.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+.... .........+...++.++++++++.+ .++++||+||++|+..++.++...+...-
T Consensus 57 ~lG~~~p~v~~A~~~~~~~~~---~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~al~~~~~~~~~~G 132 (448)
T 3dod_A 57 VHGHRKKELDDAIKKQLGKIA---HSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMAFQYWKNIG 132 (448)
T ss_dssp SSCBSCHHHHHHHHHHHTTCS---CCCCSSSEEHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhcc---CccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHHHHHHHhhC
Confidence 345678889999998775421 11111233456788999999999764 57999999999999999987742110000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHhc---------CcEEEEEeCCCCC---C-C---hHH-HHHHHHHHHhccccCCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTRA---------GGSVVEVQLPFPL---A-S---EEE-IINEFKKGIEKGKKDGK 189 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~~---------g~~v~~~~~~~~~---~-~---~~~-~~~~l~~~i~~~~~~~~ 189 (452)
...+++|++.++.|++.......+.... ...+..++.+... + . ... .+++|++++++. .+
T Consensus 133 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~ 209 (448)
T 3dod_A 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEH---HE 209 (448)
T ss_dssp CTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHH---GG
T ss_pred CCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhC---CC
Confidence 0115899999999987543332211100 0122334321100 0 0 011 278888888632 25
Q ss_pred ceEEEEEeccC-CCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC-
Q 012991 190 MIRLAIIDHIT-SMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP- 258 (452)
Q Consensus 190 ~~~lv~~~~~~-n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~- 258 (452)
++++|+++.++ +++|.+.+ +++|.++|++||+ ++|+|++|+ +|.. ..+.....+|++++| |++.++
T Consensus 210 ~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~-~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~s--K~l~~G~ 286 (448)
T 3dod_A 210 EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDV-LMIVDEVATGFGRTGKMFACEHENVQPDLMAAG--KGITGGY 286 (448)
T ss_dssp GEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTS
T ss_pred CEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCC-EEEEeccccCCCcccchhhhhhcCCCCCEEEec--ccccCCc
Confidence 68889999888 89998876 8999999999999 899999987 4322 122223357777654 987665
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|++++++++++. +..... . ... .....+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|
T Consensus 287 ~~ig~v~~~~~~~~~-~~~~~~-~--~~~--~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~~~~~l 355 (448)
T 3dod_A 287 LPIAVTFATEDIYKA-FYDDYE-N--LKT--FFHGHSYTGNQLGCAVALENLALFES-----ENIVEQVAEKSKKLHFLL 355 (448)
T ss_dssp SCCEEEEEEHHHHHT-TCSCGG-G--CCC--CCCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECHHHHHH-hhhccc-c--CCc--ccccCCCCcCHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHH
Confidence 257999999888775 221000 0 000 00000112233333444445555442 345667778888888888
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCCh----h-hHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE----D-DALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.++............+.++++.+++....... . ...++.+.|.++ ||.+.++ +
T Consensus 356 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~---------------------~ 413 (448)
T 3dod_A 356 QDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL---------------------G 413 (448)
T ss_dssp HHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE---------------------T
T ss_pred HHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc---------------------C
Confidence 76433332222223466778877531110000 0 146788888775 9998532 2
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++|++++...|+++|++++++|++++++
T Consensus 414 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 414 DVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 68999998888999999999999999865
No 203
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.90 E-value=2e-22 Score=202.53 Aligned_cols=349 Identities=9% Similarity=0.068 Sum_probs=217.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.|.+++.+.+...... ........+...++.++++++++.+ .++|+|++||++|+..++.++........
T Consensus 63 ~lG~~~p~v~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~ggseA~~~al~~~~~~~~~~g 139 (459)
T 4a6r_A 63 NVGYGRKDFAEAARRQMEELPFY--NTFFKTTHPAVVELSSLLAEVTPAG-FDRVFYTNSGSESVDTMIRMVRRYWDVQG 139 (459)
T ss_dssp TTCBCCHHHHHHHHHHHHHCSCC--CTTSSSCCHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhcccc--ccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 34566788999999887653211 1111224566788999999999874 68999999999999999987742111000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh---------cCcEEEEEeCCCC------CCCh--HHH-HHHHHHHHhccccCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR---------AGGSVVEVQLPFP------LASE--EEI-INEFKKGIEKGKKDG 188 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~---------~g~~v~~~~~~~~------~~~~--~~~-~~~l~~~i~~~~~~~ 188 (452)
..++++|++.++.|++.......+... ....+..++.++. .+.+ ... +++|++.+++.. .
T Consensus 140 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~--~ 217 (459)
T 4a6r_A 140 KPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIG--A 217 (459)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHC--G
T ss_pred CCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcC--C
Confidence 125789999999998765443322000 0113444543210 0111 112 688888886321 1
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP- 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~- 258 (452)
+++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|+ +|... .+.....+|++++| |++.|+
T Consensus 218 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~ 294 (459)
T 4a6r_A 218 DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDV-LLVADEVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGY 294 (459)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTS
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcccccchHhhcCCCCCeeehh--hhhcCCC
Confidence 46788999888888898887 9999999999999 899999986 43221 22223357888765 987664
Q ss_pred CCcEEEEEecCccccCCCC--CceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHH--PVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH-EQALKMA 335 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~-~~~~~l~ 335 (452)
..+|++++++++++. +.. ... ... +.+.+..++.+..++++.+.+ +.+.++.+ ++.++++
T Consensus 295 ~~lg~v~~~~~i~~~-~~~~~~~~---------~~~--t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~~~~ 357 (459)
T 4a6r_A 295 LPIGAVFVGKRVAEG-LIAGGDFN---------HGF--TYSGHPVCAAVAHANVAALRD-----EGIVQRVKDDIGPYMQ 357 (459)
T ss_dssp SCCEEEEECHHHHHH-HHHHCTTH---------HHH--HHCSCHHHHHHHHHHHHHHHH-----TCHHHHHHHTHHHHHH
T ss_pred CCccceeeCHHHHHH-hhcCCCcc---------cCC--CCCCCHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHH
Confidence 458999998887765 210 100 000 112223333344445555442 33466666 7777777
Q ss_pred HHH-HHHcCCCcCCCcccccceEEEEcCCcccc-----CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 336 RML-ANAWGTSLGSPPEICAAMVMVGLPSRLRV-----MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 336 ~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+.| ..+............+.++++.+...... .......++.+.|.++ ||.++..
T Consensus 358 ~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~------------------ 418 (459)
T 4a6r_A 358 KRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NLIMRAC------------------ 418 (459)
T ss_dssp HHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TEECEEE------------------
T ss_pred HHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHC-CeEEecC------------------
Confidence 777 55433322222223366777766421000 0011256788888775 9998632
Q ss_pred CCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 410 GIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 410 ~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++|++++...|++++++++++|++++++
T Consensus 419 ---g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 419 ---GDHIVSAPPLVMTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 168999998888999999999999999864
No 204
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.90 E-value=8.8e-24 Score=205.43 Aligned_cols=314 Identities=12% Similarity=0.069 Sum_probs=200.2
Q ss_pred cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCC
Q 012991 52 PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRND 131 (452)
Q Consensus 52 p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~ 131 (452)
++.+.+++.+.. .. ..+...+...+++++++++++.+ ..++++||++|+.+++.++. .+|+
T Consensus 28 ~p~v~~ai~~~~------~~--~~~~~~~~~~~l~~~la~~~~~~---~~i~~~~g~~a~~~a~~~~~--------~~g~ 88 (359)
T 3pj0_A 28 LTEALQNIDDNL------ES--DIYGNGAVIEDFETKIAKILGKQ---SAVFFPSGTMAQQIALRIWA--------DRKE 88 (359)
T ss_dssp HHHHTTTSCTTC------BC--CBTTBSHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHHHHHHH--------HHHT
T ss_pred CHHHHHHHHhhc------cc--CcccCCHHHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHHH--------hcCC
Confidence 555777776621 11 12334567899999999999985 33667899999999998773 5666
Q ss_pred E--EEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-cccc
Q 012991 132 T--VLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVI 207 (452)
Q Consensus 132 ~--Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~ 207 (452)
+ |+++.+.|.+..... .++...|.+++.++. + ++.+ +++++++ .+++++|++++++|++ |.++
T Consensus 89 ~~vvi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~----~-~~~~d~~~l~~~-------~~~~~~v~~~~p~n~~~G~~~ 155 (359)
T 3pj0_A 89 NRRVAYHPLSHLEIHEQD-GLKELQQITPLLLGT----A-NQLLTIDDIKSL-------REPVSSVLIELPQREIGGQLP 155 (359)
T ss_dssp CCEEEECTTCHHHHSSTT-HHHHHHCCEEEECSC----T-TSCCCHHHHHTC-------SSCCSEEEEESSBGGGTSBCC
T ss_pred CcEEEEeccceeeehhcc-hHHHhcCceEEecCC----c-CCCcCHHHHHhc-------cCCceEEEEEecccCCCcccC
Confidence 5 555556655432211 112345889888743 2 2233 7777765 2578999999999887 7998
Q ss_pred cHHHH---HHHHHHcCCCEEEEecccccCCc------cccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCC
Q 012991 208 PVRKL---VKICRDEGVDQVFVDAAHAMGSI------KIDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHP 278 (452)
Q Consensus 208 ~l~~i---~~l~~~~~~~~~ivD~a~~~g~~------~~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~ 278 (452)
|.+++ +++|++||+ ++|+|+++..+.. ..++. .+.|+++.|+||+++++.| |+++.++++++. + ..
T Consensus 156 ~~~~l~~l~~~~~~~~~-~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~-~-~~ 230 (359)
T 3pj0_A 156 AFEELEKISEYCHEQGI-SLHLDGARLWEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQE-A-KI 230 (359)
T ss_dssp CHHHHHHHHHHHHHHTC-EEEEEETTCGGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHH-H-HH
T ss_pred CHHHHHHHHHHHHHcCC-EEEEECcchhcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHH-H-HH
Confidence 86665 999999999 7999998765432 11111 3578999999999888876 888888877765 1 11
Q ss_pred ceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcC-CCcccccceE
Q 012991 279 VVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLG-SPPEICAAMV 357 (452)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~ 357 (452)
. ...++ +........+.. ++..+.. ..+. .++..++++++.+.|.+++++++. .++. ++++
T Consensus 231 ~-~~~~~----------~~~~~~~~~~~a-~~~~l~~---~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~~ 292 (359)
T 3pj0_A 231 W-KRRYG----------GDLISLYPYILS-ADYYFEK---RIGK-MAEYFEAAKGLAERFNSCSGVKTVPEVPV--SNMF 292 (359)
T ss_dssp H-HHHTT----------CCCSCCHHHHHH-HHHHHHH---HGGG-HHHHHHHHHHHHHHHHTSTTEEEESSSCS--SSEE
T ss_pred H-HHHhC----------CCcchhHHHHHH-HHHHHHH---HHHH-hHHHHHHHHHHHHHHhhCCCceeeccCCc--ceEE
Confidence 0 00011 111111111111 2222222 1222 334677888999999988788763 3433 6677
Q ss_pred EEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccc---cCCHHHHHHHHH
Q 012991 358 MVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQV---YNTLEDYEKFRD 434 (452)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~t~~di~~l~~ 434 (452)
++.++.. ...+..++.+.|.++ ||.+..+..+.. ...+++|+++.. ..+.++++..++
T Consensus 293 ~~~~~~~----~~~~~~~l~~~l~~~-GV~v~~g~~~~~--------------~~~~~~r~~i~~~~~~~~~e~l~~~l~ 353 (359)
T 3pj0_A 293 HVYFENS----ADEIGAILTKIQDET-GVGISGYLQEKS--------------ADVCAFEVSVGDAFAEIPAKNLELVFR 353 (359)
T ss_dssp EEEESSC----HHHHHHHHHHHHHHH-CEECCSCCEEEE--------------TTEEEEEEECCTTGGGSCHHHHHHHHH
T ss_pred EEEecCc----cchhHHHHHHHHHhc-CcEecCCccccC--------------CCceEEEEEecCccccCCHHHHHHHHH
Confidence 7776521 123567888888764 999976544311 224689998852 247888888888
Q ss_pred HHHHH
Q 012991 435 AVILL 439 (452)
Q Consensus 435 ~l~~~ 439 (452)
.|++.
T Consensus 354 ~l~~~ 358 (359)
T 3pj0_A 354 CLEKE 358 (359)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 205
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.90 E-value=6.3e-22 Score=199.00 Aligned_cols=357 Identities=10% Similarity=0.025 Sum_probs=217.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.+.+++.+.+....... . ......+...++.++++++++.+ .++++||+||++|+..++.++.......-
T Consensus 64 ~lG~~~p~v~~A~~~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~gGseA~~~al~~~~~~~~~~g 140 (460)
T 3gju_A 64 NVGYGRQKIADAIATQAKNLAYYH-A-YVGHGTEASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLIWYYNNVLG 140 (460)
T ss_dssp TTCBCCHHHHHHHHHHHHHHSCCC-C-CTTCCCHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhccccc-c-ccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 356677889999998887642111 1 11223456788999999998764 67999999999999999987632110000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHH---------hcCcEEEEEeCCCC--CCC-------hHHH-HHHHHHHHhccccC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVT---------RAGGSVVEVQLPFP--LAS-------EEEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~---------~~g~~v~~~~~~~~--~~~-------~~~~-~~~l~~~i~~~~~~ 187 (452)
..++++|++.++.|++.......+.. .....+..++.+.. .++ .... +++|++++++..
T Consensus 141 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~-- 218 (460)
T 3gju_A 141 RPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG-- 218 (460)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC--
Confidence 03468999999999876544432200 00113455543211 011 1122 688888886321
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.+++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++++ +|-.. .+.....+|++++| |++.|+
T Consensus 219 ~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l~gG 295 (460)
T 3gju_A 219 PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDV-LLVADEVVTGFGRLGTMFGSDHYGIKPDLITIA--KGLTSA 295 (460)
T ss_dssp GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTT
T ss_pred CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccCCCcccccchHhhcCCCCCeeeee--hhhcCC
Confidence 257899999999999998766 8999999999999 899999987 43221 22223357877655 987664
Q ss_pred -CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 259 -PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 259 -~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
..+|++++++++++. +....... .. .....+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.
T Consensus 296 ~~~lg~v~~~~~i~~~-~~~~~~~~---~~--~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~~~~~ 364 (460)
T 3gju_A 296 YAPLSGVIVADRVWQV-LVQGSDKL---GS--LGHGWTYSAHPICVAAGVANLELIDE-----MDLVTNAGETGAYFRAE 364 (460)
T ss_dssp SSCCEEEEEEHHHHHH-HHHHHHHH---CS--CSCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECHHHHHH-Hhcccccc---cc--cccCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHH
Confidence 357999999887765 21000000 00 00000112233334444455555443 23456666677777777
Q ss_pred HHHHc-CCCcCCCcccccceEEEEcCCccccC-----ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCC
Q 012991 338 LANAW-GTSLGSPPEICAAMVMVGLPSRLRVM-----GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGI 411 (452)
Q Consensus 338 L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
|.+.. ...........+.++++.+....... ......++.+.|.++ ||.+....
T Consensus 365 l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------------------- 424 (460)
T 3gju_A 365 LAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP------------------- 424 (460)
T ss_dssp HHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS-------------------
T ss_pred HHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC-------------------
Confidence 64431 22222122233667777664211000 011256788888775 99886422
Q ss_pred ccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 412 ITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 412 ~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.++++||+++...|++++++++++|++++++
T Consensus 425 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 425 QGDILGFAPPLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1369999998888999999999999999875
No 206
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.90 E-value=9.6e-23 Score=203.38 Aligned_cols=345 Identities=12% Similarity=0.116 Sum_probs=217.4
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
+..++.+.+++.+.+... .+... ....+...+++++++++++.+ .++|++|+||++|+..++.++. ...
T Consensus 58 G~~~p~v~~a~~~~~~~~-~~~~~---~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~a~~~~~------~~~ 126 (433)
T 1zod_A 58 GHCHPEIVSVIGEYAGKL-DHLFS---EMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMAK------LVT 126 (433)
T ss_dssp CBTCHHHHHHHHHHHHHC-CCCCT---TCCCHHHHHHHHHHHHHSCTT-CCEEEEESCHHHHHHHHHHHHH------HHH
T ss_pred CCCCHHHHHHHHHHHHhC-ccccc---ccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHHH------Hhh
Confidence 445778999999887653 11111 112355678889999999875 6899999999999999998642 013
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHH-----hc---CcEEEEEeCCC----CCCC----hHHH-HHHHHHHHhccccCCCce
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVT-----RA---GGSVVEVQLPF----PLAS----EEEI-INEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~-----~~---g~~v~~~~~~~----~~~~----~~~~-~~~l~~~i~~~~~~~~~~ 191 (452)
.+++|++.++.|++.......+.. .. ...+..++.+. +.++ .+.+ +++|++++++.. .+++
T Consensus 127 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~~ 204 (433)
T 1zod_A 127 GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS--SGNL 204 (433)
T ss_dssp TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHC--CSCE
T ss_pred CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcC--CCCe
Confidence 457999999988765443321100 00 01344443321 1111 1234 888999886320 1567
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCCCCcE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCPPSVA 262 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G 262 (452)
++|+++..+|++|...+ +++|.++|++||+ ++|+|++|+ +|... .+.....+|++ |++|+++++.++|
T Consensus 205 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig 281 (433)
T 1zod_A 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGM-LLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLA 281 (433)
T ss_dssp EEEEECSEETTTTCEECCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCE
T ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC-EEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccCCCCee
Confidence 88888777788998766 9999999999999 899999998 54221 12223356766 4569876655589
Q ss_pred EEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc
Q 012991 263 FLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW 342 (452)
Q Consensus 263 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 342 (452)
++++++++++. +.... +. . ..+.+.+...+.+..++++.+.+ +.+.++++++++++.+.|.++.
T Consensus 282 ~~~~~~~~~~~-~~~~~----~~-----~-~~t~~~~~~~~~a~~aal~~~~~-----~~~~~~~~~~~~~l~~~l~~l~ 345 (433)
T 1zod_A 282 AIVTSAAIEER-AHELG----YL-----F-YTTHVSDPLPAAVGLRVLDVVQR-----DGLVARANVMGDRLRRGLLDLM 345 (433)
T ss_dssp EEEECHHHHHH-HHHTT----CC-----C-CCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHh-hccCC----CC-----C-CCCCCcCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHH
Confidence 99998877664 21100 00 0 00112233444455566666554 2356778888888888887752
Q ss_pred -CCCcCCCcccccceEEEEcCCccc--cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 343 -GTSLGSPPEICAAMVMVGLPSRLR--VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
.+.........+.++++.++.... ..+..+..++.+.|.+ .||.+..+..+ ..++++|++
T Consensus 346 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----------------~~~~~lRi~ 408 (433)
T 1zod_A 346 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLP----------------GMGGVFRIA 408 (433)
T ss_dssp HHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCT----------------TSCCEEEEC
T ss_pred HhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCC----------------CCCCEEEEE
Confidence 122111111236777887652100 0001346778888876 59998654322 123799999
Q ss_pred ccccCCHHHHHHHHHHHHHHHhc
Q 012991 420 HQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++..+|++|+++++++|++++++
T Consensus 409 ~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 409 PPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHH
Confidence 98888999999999999998753
No 207
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.90 E-value=1.3e-21 Score=196.01 Aligned_cols=345 Identities=14% Similarity=0.123 Sum_probs=214.4
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|+.++.+.+++.+.+... . ...+.....+...++.++++++++.+..++++||+|||+|+..++..+. . .
T Consensus 75 lGh~~p~v~~A~~~~~~~~-~--~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~-~-----~ 145 (451)
T 3oks_A 75 VGNSAPKVVEAVRSQVGDF-T--HTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIAR-S-----H 145 (451)
T ss_dssp TCTTCHHHHHHHHHHHTTC-S--CCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHH-H-----H
T ss_pred cCCCCHHHHHHHHHHHHhc-c--cccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHH-H-----h
Confidence 4566888999998887542 1 1111223456678899999999975434799999999999999997652 1 1
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHh----------cCcEEEEEeCCCC-------CCCh--HHH-HHHHHHHHhccccC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTR----------AGGSVVEVQLPFP-------LASE--EEI-INEFKKGIEKGKKD 187 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~----------~g~~v~~~~~~~~-------~~~~--~~~-~~~l~~~i~~~~~~ 187 (452)
..+++|++.++.|++.......+... ....+..++.+.+ .+.+ ... ++.+++.+++.. .
T Consensus 146 ~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~-~ 224 (451)
T 3oks_A 146 THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQI-G 224 (451)
T ss_dssp HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHT-C
T ss_pred cCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhc-C
Confidence 34579999999998765544332000 0114556644210 0100 111 444555554210 1
Q ss_pred CCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCc----cccccccCccEEEEcCcccCcCC
Q 012991 188 GKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSI----KIDVKEIGADFYVSNLHKWFFCP 258 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~~~~s~~K~l~g~ 258 (452)
.+++++|+++..+++.|.+.+ +++|.++|++||+ ++|+|++|+ +|.. ..+.....+|++++ +|++.++
T Consensus 225 ~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~--sK~l~~G 301 (451)
T 3oks_A 225 ADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDV-VFIADEVQTGFARTGAMFACEHEGIDPDLIVT--AKGIAGG 301 (451)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTT
T ss_pred CCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCC-EEEEEecccCCCccccchhhhhcCCCCCeeee--hhhhhCC
Confidence 256788888887777788876 9999999999999 899999986 3321 12222335777755 5987665
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|++++++++++. + .+.. .+ .+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|
T Consensus 302 ~~iG~v~~~~~~~~~-~-~~~~---~~--------~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L 363 (451)
T 3oks_A 302 LPLSAVTGRAEIMDS-P-HVSG---LG--------GTYGGNPIACAAALATIETIES-----EGLVARAQQIEKIMKDRL 363 (451)
T ss_dssp SSCEEEEEEHHHHTC-S-CTTS---BC--------CSSSSCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECHHHHhh-h-cCCC---cC--------CCCCCCHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHH
Confidence 558999999888775 2 2110 00 0112233333444445555443 245667777777777777
Q ss_pred HHHc-CCCcCCCcccccceEEEEcCCcc-ccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceE
Q 012991 339 ANAW-GTSLGSPPEICAAMVMVGLPSRL-RVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYA 416 (452)
Q Consensus 339 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 416 (452)
.++. ...........+.++++.+.+.. ...+..+..++.+.|.++ ||.+..+.. .++++
T Consensus 364 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~------------------~~~~i 424 (451)
T 3oks_A 364 GRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAA-GVIVLSCGT------------------YGNVV 424 (451)
T ss_dssp HHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHT-TEECEEECT------------------TSCEE
T ss_pred HHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhC-CcEEecCCC------------------CCCEE
Confidence 6642 11111112223667777663100 001234567888888775 999865322 13689
Q ss_pred EecccccCCHHHHHHHHHHHHHHHhc
Q 012991 417 RISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 417 Ris~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++...|++++++++++|++++++
T Consensus 425 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 425 RFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999888999999999999998864
No 208
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.90 E-value=3.7e-22 Score=200.95 Aligned_cols=350 Identities=9% Similarity=0.067 Sum_probs=220.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.|.+++.+.+...... .. ......+...++.++++++++.+ .++++|++||++|+..++..+.......-
T Consensus 68 ~lGh~~p~v~~A~~~~~~~~~~~-~~-~~~~~~~~~~~lae~l~~~~~~~-~~~v~~~~sGseA~~~aik~a~~~~~~~g 144 (472)
T 3hmu_A 68 NIGYGRDELAEVAARQMRELPYY-NT-FFKTTHVPAIALAQKLAELAPGD-LNHVFFAGGGSEANDTNIRMVRTYWQNKG 144 (472)
T ss_dssp TTCBCCHHHHHHHHHHHHHCSCC-CS-SSSEECHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhcccc-cc-ccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHHHHHhcC
Confidence 35667788999999988653211 11 11223556788999999999764 57999999999999999987632110000
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh--------cCcEEEEEeCCCCC--C---Ch---HHH-HHHHHHHHhccccCCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR--------AGGSVVEVQLPFPL--A---SE---EEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~--------~g~~v~~~~~~~~~--~---~~---~~~-~~~l~~~i~~~~~~~~ 189 (452)
..++++|++.++.|++.......+... ....+..++.++.. + +. ... +++|++.+++.. .+
T Consensus 145 ~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~ 222 (472)
T 3hmu_A 145 QPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELG--EN 222 (472)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHC--GG
T ss_pred CCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcC--CC
Confidence 124679999999988765443221000 00134455432100 0 11 112 678888885321 25
Q ss_pred ceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----ccccccCccEEEEcCcccCcCC-C
Q 012991 190 MIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----IDVKEIGADFYVSNLHKWFFCP-P 259 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~l~g~-~ 259 (452)
++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++++ +|-.. .+.....+|++++| |++.|+ .
T Consensus 223 ~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gi-llI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~gg~~ 299 (472)
T 3hmu_A 223 RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDI-LLIADEVICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSSGYA 299 (472)
T ss_dssp GEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSS
T ss_pred CEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEccccCCcccCccchhHHhCCCCceeeec--hhhhcCCc
Confidence 6899999999999999887 9999999999999 899999987 43321 12223357888765 987664 3
Q ss_pred CcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNH-EQALKMARML 338 (452)
Q Consensus 260 G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~-~~~~~l~~~L 338 (452)
.+|++++++++++. +....+. .+. +.+.+..++.+..++++.+.+ +.+.++.+ ++.+++++.|
T Consensus 300 plG~v~~~~~i~~~-~~~~~~~--~~~--------t~~~np~a~aAa~aaL~~~~~-----~~~~~~~~~~~~~~l~~~L 363 (472)
T 3hmu_A 300 PIGGSIVCDEVAHV-IGKDEFN--HGY--------TYSGHPVAAAVALENLRILEE-----ENILDHVRNVAAPYLKEKW 363 (472)
T ss_dssp CCEEEEEEHHHHHH-HTTSCBC--CCC--------TTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHTHHHHHHHHH
T ss_pred ceEEEEECHHHHHh-cccCCcc--ccC--------CCCCCHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHH
Confidence 58999999888775 2101000 000 112223333444445555543 34577777 8888888888
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCC------hhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMG------EDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
.++............+.++.+.+........ ......+.+.|.++ ||.++..
T Consensus 364 ~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~--------------------- 421 (472)
T 3hmu_A 364 EALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFAN-NLIMRHV--------------------- 421 (472)
T ss_dssp HGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHT-TBCCEEE---------------------
T ss_pred HHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHC-CcEEEec---------------------
Confidence 7653332222222346677777642100000 11256788888775 9988632
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++++|++++...|++|+++++++|+++++.
T Consensus 422 g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 422 GDRMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 169999998888999999999999998864
No 209
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.90 E-value=1.7e-23 Score=210.80 Aligned_cols=382 Identities=12% Similarity=0.074 Sum_probs=219.2
Q ss_pred ccccCCCCCCCCCHHHHHhhhcc-------CCCCeEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Q 012991 13 HVSKKPKLTRCISEAEIRDEFSH-------HQHGVARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILES 85 (452)
Q Consensus 13 ~~~~~~~~~~~~~~~~ir~~~~~-------~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (452)
++.+.-.|+.++.+....+.... +..+..|+|..+..+. +.+.+++.+.+. .+.. .+.......++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~----~~~~--~y~~~~~~~~l 79 (467)
T 2oqx_A 7 FRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMM----RGDE--AYSGSRSYYAL 79 (467)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTT----SCCC--CSSSCHHHHHH
T ss_pred hheeeecccccccHHHHHHHHHHcCCCceeccCCCeeEecccCCCc-HHHHHHHHHHhc----cCcc--eeccCchhHHH
Confidence 44445555556665443332221 2233456665443333 447777766542 1111 23334567889
Q ss_pred HHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCC-----C----CEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 86 RAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR-----N----DTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 86 ~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~-----g----~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
+++++++++. +++++|+|||+|+.+++.++. ++ | |+|++. ..|...+... ....|.
T Consensus 80 ~~~la~~~~~---~~v~~t~~gt~A~~~al~~~~--------~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~---~~~~~~ 144 (467)
T 2oqx_A 80 AESVKNIFGY---QYTIPTHQGRGAEQIYIPVLI--------KKREQEKGLDRSKMVAFS-NYFFDTTQGH---SQINGC 144 (467)
T ss_dssp HHHHHHHHCC---SEEEEEC--CCSHHHHHHHHH--------HHHHHHHCCCTTTCEEEE-SSCCHHHHHH---HHHTTC
T ss_pred HHHHHHHhCc---CcEEEcCCcHHHHHHHHHHHh--------ccccccCCCCccceEEec-ccccccchhh---hhccCc
Confidence 9999999987 589999999999999999874 34 5 887776 5564433333 233466
Q ss_pred EEEEEeCCC--CCC----ChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCC-ccccc---HHHHHHHHHHcCCCEEE
Q 012991 157 SVVEVQLPF--PLA----SEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMP-CVVIP---VRKLVKICRDEGVDQVF 225 (452)
Q Consensus 157 ~v~~~~~~~--~~~----~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~t-G~~~~---l~~i~~l~~~~~~~~~i 225 (452)
.+....... +.+ ..+.+ +++|++++++.. .+++++|++++++|++ |.+++ +++|+++|++||+ ++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi-~li 221 (467)
T 2oqx_A 145 TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDI-PVV 221 (467)
T ss_dssp EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTC-CEE
T ss_pred ceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCC-EEE
Confidence 655432110 111 12334 899999996320 1478999999999997 87765 6789999999999 699
Q ss_pred Eeccccc-----------CCccccccc------cCccEEEEcCcccCcCCCCcEEEEEecC-ccccCC--CCCceeccCC
Q 012991 226 VDAAHAM-----------GSIKIDVKE------IGADFYVSNLHKWFFCPPSVAFLYCRKS-ILSSDM--HHPVVSHEFG 285 (452)
Q Consensus 226 vD~a~~~-----------g~~~~~~~~------~~~d~~~~s~~K~l~g~~G~G~l~~~~~-~~~~~l--~~~~~~~~~~ 285 (452)
+|++++. +....+... ..+|++++|+||+++.|.| |+++.+++ +++. + ..+... ++
T Consensus 222 ~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~-~~~~~~~~~--~~ 297 (467)
T 2oqx_A 222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDV-YTECRTLCV--VQ 297 (467)
T ss_dssp EECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHH-HHHHHHHHH--HT
T ss_pred EEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHH-HHHHHHhhh--cc
Confidence 9988765 222222211 2378889999998654545 77777766 3332 0 011100 01
Q ss_pred CCcccccccccccCccccccHHHHHHHH-HHhhcCH-HHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCC
Q 012991 286 NGLPIESAWIGTRDYSAQLVIPSAVTFV-SRFEGGI-DGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPS 363 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~g~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (452)
.+.. ..+.... .++. ++... .. .. +...++..++++++.+.|.++ ++++. +.. +.++++.++.
T Consensus 298 ~~~~----~~~~~~~---~~~~-al~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~--~~~~~~~~~~ 362 (467)
T 2oqx_A 298 EGFP----TYGGLEG---GAME-RLAVGLYD---GMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAG--GHAAFVDAGK 362 (467)
T ss_dssp TSSC----CCCCCCH---HHHH-HHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EEC--SSCEEEEHHH
T ss_pred CCcc----cccchhh---hHHH-HHHHhhHh---hhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCC--ceEEEEechh
Confidence 1000 0011111 1111 22221 22 11 123445577888999999887 77766 443 6677877631
Q ss_pred c-cccC-ChhhHHHHHHHH-hhhcceEeeecccC-CCCCCCCCCCCCCCCCCccceEEeccccc-CCHHHHHHHHHHHHH
Q 012991 364 R-LRVM-GEDDALRLRGHL-RVRFGVEVPIHYQA-PKDDGQPQAGARDKDGIITGYARISHQVY-NTLEDYEKFRDAVIL 438 (452)
Q Consensus 364 ~-~~~~-~~~~~~~l~~~L-~~~~gI~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~~di~~l~~~l~~ 438 (452)
. .+.. ...+...+.+.| .+ .||.+.++..+ .+... .... . .....+++|++++.. +|++||++++++|++
T Consensus 363 ~~~~~~~~~~~~~~l~~~L~~~-~gv~~~~~~~~~~~~~~--~~g~-~-~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~ 437 (467)
T 2oqx_A 363 LLPHIPADQFPAQALACELYKV-AGIRAVEIGSFLLGRDP--KTGK-Q-LPCPAELLRLTIPRATYTQTHMDFIIEAFKH 437 (467)
T ss_dssp HSTTSCGGGCHHHHHHHHHHHH-HCEECEEESHHHHCBCT--TTCS-B-CCCSCCEEEECCCTTTSCHHHHHHHHHHHHH
T ss_pred hcccCCcccccHHHHHHHHHHh-cCceecccccccccccc--cccc-c-ccCccCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0 0000 111255678888 55 59998652211 00000 0000 0 001237999999988 899999999999999
Q ss_pred HHhcc
Q 012991 439 LVEEG 443 (452)
Q Consensus 439 ~~~~~ 443 (452)
+++..
T Consensus 438 ~l~~~ 442 (467)
T 2oqx_A 438 VKENA 442 (467)
T ss_dssp HHHSG
T ss_pred HHhhh
Confidence 98753
No 210
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.90 E-value=1.3e-22 Score=199.53 Aligned_cols=286 Identities=14% Similarity=0.129 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHH-HHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE--ecChhHHHHHHHHHhhcccccCCCCC
Q 012991 53 KSVLADQQKWQL-KFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISL--VDNATTAAAIVLQQIGRGFTEGRFHR 129 (452)
Q Consensus 53 ~~v~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~--t~g~t~a~~~~~~~l~~~~~~~~~~~ 129 (452)
..|++++.+... .....++..+.+. ....+++++.+++++|.+ ..+++ ++||++|+..++.++ +++
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~-~~~~~~Le~~lA~l~g~e--~alv~p~~~sGt~Ai~~al~al--------l~~ 100 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYD-DEGRDTLERVYATVFKTE--AALVRPQIISGTHAISTVLFGI--------LRP 100 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTT-CHHHHHHHHHHHHHHTCS--EEEEETTSCSHHHHHHHHHHHH--------CCT
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCC-hhHHHHHHHHHHHHhCCC--cEEEECCCccHHHHHHHHHHHh--------cCC
Confidence 346777666431 1111222222222 334788999999999995 44444 899999999999887 589
Q ss_pred CCEEEEeC-CcchhHHHHHH------HHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec---
Q 012991 130 NDTVLMLH-CAFQAVKKSIQ------AYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH--- 198 (452)
Q Consensus 130 g~~Vl~~~-~~~~s~~~~~~------~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~--- 198 (452)
||+|++++ +.|.+....+. ..+...|++++.+++ +.++.+ ++++++++ .+++++|++++
T Consensus 101 GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~----~~~g~~d~e~l~~ai------~~~tklV~i~~s~g 170 (409)
T 3jzl_A 101 DDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPL----LENGDVDFPRIAKKM------TPKTKMIGIQRSRG 170 (409)
T ss_dssp TCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCC----CTTSCCCHHHHHHHC------CTTEEEEEEECSCT
T ss_pred CCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCC----CCCCCcCHHHHHHhc------cCCCeEEEEECCCC
Confidence 99999998 89988654431 113556999999854 334444 89999999 57899999999
Q ss_pred -cCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCccccccccCccEEEEcCcccCcCCC--CcEEEEEecCcccc
Q 012991 199 -ITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFCPP--SVAFLYCRKSILSS 273 (452)
Q Consensus 199 -~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g~~--G~G~l~~~~~~~~~ 273 (452)
++||+|.+.|+++|+++|++ +|+ ++++|++++.+....+....++|++++|+||+++|+. ..|+++.++++++.
T Consensus 171 ~p~nptg~v~~l~~I~~la~~~~~~~-~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~ 249 (409)
T 3jzl_A 171 YADRPSFTIEKIKEMIVFVKNINPEV-IVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDL 249 (409)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHCTTC-EEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHH
T ss_pred CCCCCcCccccHHHHHHHHHhhCCCC-EEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHH
Confidence 99999999999999999999 999 8999999988764344445689999999999865531 13899999887775
Q ss_pred CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-c-
Q 012991 274 DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-E- 351 (452)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~- 351 (452)
+...... .+.+. ..+. ... ....+++-+.. ....+++..+++.++.+.|.++ ++++...+ +
T Consensus 250 -l~~~~~~--~~~g~-----~~g~-~~~---~~~~~l~gl~~----~~~r~~~~~~~a~~la~~L~~~-g~~v~p~~~~~ 312 (409)
T 3jzl_A 250 -CGYRLTT--PGIGR-----EAGA-SLY---SLLEMYQGFFL----APHVTAQAIKGARFTAAMLAEF-GVEADPVWDAP 312 (409)
T ss_dssp -HHHHHSC--TTTGG-----GCCC-CTT---CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSC
T ss_pred -HHHHhcc--ccccc-----cccc-cHH---HHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCC
Confidence 2110000 00000 0011 111 12223333332 3445667788899999999987 66663221 1
Q ss_pred cccceEEEEcCCccccCChhhHHHHHHHHhhh
Q 012991 352 ICAAMVMVGLPSRLRVMGEDDALRLRGHLRVR 383 (452)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 383 (452)
....++.|.+. +.....++++.|...
T Consensus 313 ~~~~i~~i~l~------~~~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 313 RTDLIQSVSFH------NKEKMVAFAQAIQAA 338 (409)
T ss_dssp CSSSCCEEECS------CHHHHHHHHHHHHHT
T ss_pred CccEEEEEEeC------CHHHHHHHHHHHHhc
Confidence 11236777775 355677888998653
No 211
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.89 E-value=1.3e-22 Score=200.87 Aligned_cols=331 Identities=11% Similarity=0.045 Sum_probs=207.6
Q ss_pred CCCeEEeccCCC-C-CCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCCC----CCcEE--EecCh
Q 012991 37 QHGVARINNGSF-G-SCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NADD----VGEIS--LVDNA 107 (452)
Q Consensus 37 ~~~~~~l~~~~~-~-~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~----~~~i~--~t~g~ 107 (452)
...++.|..+.+ + ..|+.+.+++.+. .......|....+..++++.+++++ +... +++|. .|.||
T Consensus 40 ~~~~i~l~~g~~~d~~~~~~v~~a~~~a------~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g 113 (409)
T 4eu1_A 40 AKRKVNLSIGVYRDDADQPFVLECVKQA------TLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGG 113 (409)
T ss_dssp CSSCEECCCSSCCCTTSCCCCCHHHHTC------CCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHH
T ss_pred CcCceeeeeeEEECCCCCEeecHHHHhc------CccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccc
Confidence 457899988875 3 3344466776654 1112223444455678999999976 5531 46774 59999
Q ss_pred hHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhcccc
Q 012991 108 TTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKK 186 (452)
Q Consensus 108 t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~ 186 (452)
++++..+...+. ...++||+|++++|.|.+....+ +..|.+++.+++.. ++.+.+ +++|++.+++.
T Consensus 114 ~ga~~~~~~~~~-----~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~--~~~~~~d~~~l~~~l~~~-- 180 (409)
T 4eu1_A 114 TGALRIGGDLLN-----RFVANCNRIYGPDVGYPNHESIF----AKAGMELTPYSYYD--PATKGLNLAGMLECLDKA-- 180 (409)
T ss_dssp HHHHHHHHHHGG-----GTSSSCCEEEEESSCCTHHHHHH----HHTTCEEEEECCEE--TTTTEECHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHH-----HhcCCCCEEEEeCCCcHhHHHHH----HHcCCeEEEEEeec--CcCCcCcHHHHHHHHHhC--
Confidence 999988765432 13578999999999999876655 44699999995421 122333 89999998642
Q ss_pred CCCceEEEEEeccCCCCcccccHH---HHHHHHHHcCCCEEEEecccccCCcc------c---cc-cccCccEEEEcCcc
Q 012991 187 DGKMIRLAIIDHITSMPCVVIPVR---KLVKICRDEGVDQVFVDAAHAMGSIK------I---DV-KEIGADFYVSNLHK 253 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~l~---~i~~l~~~~~~~~~ivD~a~~~g~~~------~---~~-~~~~~d~~~~s~~K 253 (452)
.++++++++++++||||.+++.+ +|+++|++||+ ++|+|++++..... . .+ ......+++.|++|
T Consensus 181 -~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~-~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 258 (409)
T 4eu1_A 181 -PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNH-IPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSK 258 (409)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTT
T ss_pred -CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCc-EEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcc
Confidence 24577888899999999999855 58999999999 89999997643321 1 11 11123467889999
Q ss_pred cCcCCCC--cEEE--EEe-cC----ccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHH---HHhhcCHH
Q 012991 254 WFFCPPS--VAFL--YCR-KS----ILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFV---SRFEGGID 321 (452)
Q Consensus 254 ~l~g~~G--~G~l--~~~-~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~g~~ 321 (452)
. +|++| +|++ ++. ++ ++.. + ... ......+++...+.++..+++.. .++....+
T Consensus 259 ~-~g~~G~riG~~~~v~~~~~~~~~l~~~-~-~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (409)
T 4eu1_A 259 N-FGLYGHRCGALHISTASAEEAKRLVSQ-L-ALL-----------IRPMYNNPPLYGAWVVSSILKDPQLTALWKKELK 324 (409)
T ss_dssp T-SSCGGGCCEEEEEECSSHHHHHHHHHH-H-HHH-----------HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred c-ccCccCCceEEEEEeCCHHHHHHHHHH-H-HHH-----------HhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6 66666 6886 443 44 3322 0 000 00011223333333344444321 00011357
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCC
Q 012991 322 GIMQRNHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDD 398 (452)
Q Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~ 398 (452)
.++++++++++++.+.|.+++. +.+..++. +.++|..+ +. ++...|.+++||.+.+
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~--~~~~~~~~----------~~-~~~~~ll~~~gv~v~p-------- 383 (409)
T 4eu1_A 325 QMSSRIAEVRKRLVSELKACGSVHDWSHIERQV--GMMAYTGL----------TR-EQVELLRSEYHIYMTL-------- 383 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSC--SSEEECCC----------CH-HHHHHHHHHHCEECCT--------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceecCCc--eEEEEeCC----------CH-HHHHHHHHcCCEEEcC--------
Confidence 7888899999999999988621 44333332 44555332 23 3445555556999841
Q ss_pred CCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHH
Q 012991 399 GQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 399 ~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
..|++++.. +.+|+++++++|++++
T Consensus 384 ----------------~~Ri~~~~~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 384 ----------------NGRAAVSGL-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ----------------TCEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred ----------------CCEEEEEec-CHhhHHHHHHHHHHHh
Confidence 138888754 5667999999999876
No 212
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.89 E-value=9.9e-22 Score=196.12 Aligned_cols=326 Identities=12% Similarity=0.110 Sum_probs=206.4
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|+.++.|.+++.+.+.... . + ....+...+++++++++++ + .++++|++|||+|+..++..+. ..
T Consensus 69 lG~~~p~v~~a~~~~~~~~~----~-~-~~~~~~~~~l~~~la~~~~-~-~~~v~~~~sGsea~~~ai~~a~------~~ 134 (434)
T 3l44_A 69 TGHAHPHITKAITTAAENGV----L-Y-GTPTALEVKFAKMLKEAMP-A-LDKVRFVNSGTEAVMTTIRVAR------AY 134 (434)
T ss_dssp SCBTCHHHHHHHHHHHHHCS----C-C-SSCCHHHHHHHHHHHHHCT-T-CSEEEEESSHHHHHHHHHHHHH------HH
T ss_pred cCCCCHHHHHHHHHHHHhCc----C-C-CCCCHHHHHHHHHHHHhCC-C-CCEEEEeCchHHHHHHHHHHHH------Hh
Confidence 34567889999998876521 1 1 1134566788899999987 3 5899999999999999998652 11
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCc-------------------EEEEEeCCCCCCChHHHHHHHHHHHhccccCC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGG-------------------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDG 188 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-------------------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 188 (452)
.++++|++.++.|++........ .|. .+..+ +.++ +++|++++++. .
T Consensus 135 ~~~~~vi~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~le~~l~~~---~ 200 (434)
T 3l44_A 135 TGRTKIMKFAGCYHGHSDLVLVA---AGSGPSTLGTPDSAGVPQSIAQEVITV----PFNN----VETLKEALDKW---G 200 (434)
T ss_dssp HCCCEEEEETTCCCCSSGGGGBC----------CCCBSSTTCCHHHHTTEEEE----CTTC----HHHHHHHHHHH---G
T ss_pred hCCCEEEEEcCccCCCcHHHHhh---cCCcccccCCCCcCCCCCcCCCceEec----Cccc----HHHHHHHHHhC---C
Confidence 36789999999887643322110 111 22233 2222 67888888642 2
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc---CCc-cccccccCccEEEEcCcccCcCCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM---GSI-KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~---g~~-~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|+. |.. ..+.....+|++++ +|.+.++..
T Consensus 201 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~i-llI~DEv~~g~~~g~~~~~~~~~~~~di~t~--sK~~~~G~~ 277 (434)
T 3l44_A 201 HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGA-LVIYDEVITAFRFMYGGAQDLLGVTPDLTAL--GKVIGGGLP 277 (434)
T ss_dssp GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTC-EEEEECTTTTTTSSSSCHHHHHTCCCSEEEE--EGGGGTTSS
T ss_pred CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCC-EEEEeccccceeccccHHHHHcCCCCCeeeh--hhhhcCCcC
Confidence 57889999988888999887 9999999999999 8999999872 211 11222334677655 498766666
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
+|++++++++++. +. +......+ .+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|.+
T Consensus 278 iG~~~~~~~i~~~-~~-~~~~~~~~--------~t~~~~~~a~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~ 342 (434)
T 3l44_A 278 IGAYGGKKEIMEQ-VA-PLGPAYQA--------GTMAGNPASMASGIACLEVLQQ-----EGLYEKLDELGATLEKGILE 342 (434)
T ss_dssp CEEEEECHHHHTT-BT-TTSSBCCC--------CTTTTCHHHHHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEcHHHHHh-hc-cCCCcccC--------CCCCcCHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHHH
Confidence 8999898888775 21 11000000 0112233333333444444331 45677778888888888876
Q ss_pred HcC-CCcCCCcccccceEEEEcCCcccc-------CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 341 AWG-TSLGSPPEICAAMVMVGLPSRLRV-------MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 341 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
+.. ..+.......+.++++.+...... .+.....++.+.|.++ ||.+..+ .
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~--------------------~ 401 (434)
T 3l44_A 343 QAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPS--------------------K 401 (434)
T ss_dssp HHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSS--------------------T
T ss_pred HHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeec--------------------C
Confidence 521 112111223366777766321000 0122346788888775 9998632 1
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.+|+++ ..|++|+++++++|+++++.
T Consensus 402 ~~~~rl~~--~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 402 YEAWFLTT--EHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp TCCEECCT--TCCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEec--ccCHHHHHHHHHHHHHHHHH
Confidence 24689875 45999999999999999865
No 213
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.89 E-value=1.4e-21 Score=196.93 Aligned_cols=354 Identities=13% Similarity=0.086 Sum_probs=220.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|..++.|.+++.+.+.... ..... ....+...++.++++++++.+ .+.++|++||++|+..++..+...+...-
T Consensus 67 ~lGh~~p~v~~A~~~~l~~~~-~~~~~--~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Aik~a~~~~~~~g 142 (476)
T 3i5t_A 67 QVGYGRREIVDAMAHQAMVLP-YASPW--YMATSPAARLAEKIATLTPGD-LNRIFFTTGGSTAVDSALRFSEFYNNVLG 142 (476)
T ss_dssp TTCBCCHHHHHHHHHHHHHCC-CCCTT--TCBCHHHHHHHHHHHTTSSTT-CCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhcc-CcccC--ccCCHHHHHHHHHHHhcCCCC-cCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 356678889999999886531 11111 234566788999999999764 57999999999999999997642211100
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh------c---CcEEEEEeCCCCC---C-Ch---HHH-HHHHHHHHhccccCCC
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR------A---GGSVVEVQLPFPL---A-SE---EEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~------~---g~~v~~~~~~~~~---~-~~---~~~-~~~l~~~i~~~~~~~~ 189 (452)
...+++|++.++.|++.......+... . ...+..++.+... + +. ... +++|++.+++.. .+
T Consensus 143 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~ 220 (476)
T 3i5t_A 143 RPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PD 220 (476)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GG
T ss_pred CCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC--CC
Confidence 133579999999998765443221000 0 0123344332110 1 11 111 678888886321 25
Q ss_pred ceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc----cc-ccccCccEEEEcCcccCcCC-
Q 012991 190 MIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK----ID-VKEIGADFYVSNLHKWFFCP- 258 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~----~~-~~~~~~d~~~~s~~K~l~g~- 258 (452)
++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|+ +|-.. .. .....+|++++| |++.++
T Consensus 221 ~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gi-llI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G~ 297 (476)
T 3i5t_A 221 TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDI-LYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA--KGVTSGY 297 (476)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTTS
T ss_pred CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEecccCCccccCceeeecccCCCcchhhhh--hhhcCCC
Confidence 7899999999999998665 8999999999999 899999987 43221 22 333457888765 987765
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|++++++++++. +. +... ..+ ......+.+.+..++.+..++++.+.+ +.+.++.+++.+++++.|
T Consensus 298 ~plg~v~~~~~i~~~-~~-~~~~---~~~-~~~~~~t~~~np~a~aAa~aaL~~~~~-----~~~~~~~~~~~~~l~~~L 366 (476)
T 3i5t_A 298 VPLGGLAISEAVLAR-IS-GENA---KGS-WFTNGYTYSNQPVACAAALANIELMER-----EGIVDQAREMADYFAAAL 366 (476)
T ss_dssp SCCEEEEECHHHHHT-TS-GGGC---TTC-EECCCCTTTTCHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEECHHHHHH-Hh-cCCc---ccc-cccccCCCCcCHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHH
Confidence 457999999888775 21 1100 000 000000112233333444445555442 456778888899999998
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccCCh-----hhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVMGE-----DDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.++............+.++++.+.+....... .....+.+.|.++ ||.+... +
T Consensus 367 ~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~---------------------g 424 (476)
T 3i5t_A 367 ASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFEL-GLIVRPL---------------------G 424 (476)
T ss_dssp HTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHT-TEECEEE---------------------T
T ss_pred HHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHC-CCEEEec---------------------C
Confidence 86532222222223466777766421000000 0255788888775 9998631 2
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+++||+++...|++++++++++|+++++.
T Consensus 425 ~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 425 DLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 69999988888999999999999999864
No 214
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.89 E-value=2.4e-22 Score=198.33 Aligned_cols=259 Identities=16% Similarity=0.160 Sum_probs=182.8
Q ss_pred HHHHHHHHHHhHhCCCCCCcEEE--ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeC-CcchhHHHHH-------HHH
Q 012991 81 GILESRAAVKDLINADDVGEISL--VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLH-CAFQAVKKSI-------QAY 150 (452)
Q Consensus 81 ~~~~~~~~la~~~~~~~~~~i~~--t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~-~~~~s~~~~~-------~~~ 150 (452)
..+++++.+++++|++ ..+++ ++||++|+..++.++ +++||+|++++ +.|.+....+ ...
T Consensus 74 ~~~~Le~~lA~l~g~e--~alv~p~~~sGt~Ai~~al~al--------l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~ 143 (427)
T 3i16_A 74 GRDSLDAVYARVFNTE--SALVRPHFVNGTHALGAALFGN--------LRPGNTMLSVCGEPYDTLHDVIGITENSNMGS 143 (427)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEETTCCSHHHHHHHHHHHH--------CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCC
T ss_pred HHHHHHHHHHHHhCCc--ceEEeCCCccHHHHHHHHHHHH--------hCCCCEEEEeCCCccHHHHHHHhccccchHHH
Confidence 4788999999999995 44554 899999999999987 58999999998 8998765444 011
Q ss_pred HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec----cCCCCcccccHHHHHHHHHH--cCCCE
Q 012991 151 VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH----ITSMPCVVIPVRKLVKICRD--EGVDQ 223 (452)
Q Consensus 151 a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~~ 223 (452)
+...|++++.+++ +.++.+ ++++++++++ .+++++|++++ ++||+|.+.|+++|+++|++ +|+ +
T Consensus 144 l~~~G~~~~~v~~----~~~g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~-~ 214 (427)
T 3i16_A 144 LKEFGINYKQVDL----KEDGKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDI-I 214 (427)
T ss_dssp TGGGTCEEEECCC----CTTSSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTS-E
T ss_pred HHHcCCEEEEecC----ccCCCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCC-E
Confidence 3556999999843 334444 8999999952 26899999999 99999999999999999999 999 7
Q ss_pred EEEecccccCCccccccccCccEEEEcCcccCcC---CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCc
Q 012991 224 VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFC---PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300 (452)
Q Consensus 224 ~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g---~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (452)
+++|++++.+.........++|+++.|+||+++| +.| |+++.++++++. +...... .+. +....
T Consensus 215 livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~g-G~i~~~~~li~~-l~~~~~~--~~~---------g~~~~ 281 (427)
T 3i16_A 215 CFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTG-GYLAGTKDCIEK-TSYRLTV--PGI---------GGECG 281 (427)
T ss_dssp EEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSC-EEEEECHHHHHH-HHHHHSC--TTT---------GGGCC
T ss_pred EEEECCCccccccCCccccCCeEEEecCcccCCCCCCceE-EEEEECHHHHHH-HHHhccc--Ccc---------CccCC
Confidence 9999999887643444456899999999998655 444 999999888875 2110000 000 11111
Q ss_pred cccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHH
Q 012991 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRG 378 (452)
Q Consensus 301 ~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (452)
....+...+++-+.. ....+++..+++.++.+.|+++ ++++...+. ....++.|.+. +.....++++
T Consensus 282 ~~~~~a~~~l~gl~~----~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~~i~~i~l~------~~~~~~~f~~ 350 (427)
T 3i16_A 282 STFGVVRSMYQGLFL----APHISMEALKGAILCSRIMELA-GFEVMPKYDEKRSDIIQSIKFN------DKDKLIEFCK 350 (427)
T ss_dssp CCTTCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCEEEECS------SHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCccEEEEEEEC------CHHHHHHHHH
Confidence 111113334444442 3455677888999999999987 556632211 11227777775 3456778888
Q ss_pred HHhh
Q 012991 379 HLRV 382 (452)
Q Consensus 379 ~L~~ 382 (452)
.|..
T Consensus 351 ~l~~ 354 (427)
T 3i16_A 351 GIQT 354 (427)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8864
No 215
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.89 E-value=4.7e-22 Score=195.88 Aligned_cols=344 Identities=13% Similarity=0.041 Sum_probs=213.6
Q ss_pred HHHHhhhcc-CCCCeEEeccCCC------CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCC--
Q 012991 27 AEIRDEFSH-HQHGVARINNGSF------GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NAD-- 96 (452)
Q Consensus 27 ~~ir~~~~~-~~~~~~~l~~~~~------~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-- 96 (452)
-.+.+.+.. ..+++|+|..|.+ .+.|+.+.++.. ..... . ....|....+..++|+++++++ +..
T Consensus 17 ~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~-~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~ 91 (405)
T 3k7y_A 17 LKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTEN-Y---KEKPYLLGNGTEDFSTLTQNLIFGNNSK 91 (405)
T ss_dssp HHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHH-C---CCCCCCTTSSCHHHHHHHHHHHHCSSCT
T ss_pred HHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCC-C---CCCCCCCCCCcHHHHHHHHHHHcCCCCc
Confidence 344444443 2467899998852 245677888776 33111 1 1123444566788888888876 321
Q ss_pred --CCC--cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHH
Q 012991 97 --DVG--EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEE 172 (452)
Q Consensus 97 --~~~--~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 172 (452)
+++ ++++|+|+++|+.+++.++. .+.+ |+|++++|.|++....+ +..|.+++.+++.. +++..
T Consensus 92 ~~~~~~i~i~~t~G~~~al~~~~~~l~------~~~~-d~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~--~~~~~ 158 (405)
T 3k7y_A 92 YIEDKKICTIQCIGGTGAIFVLLEFLK------MLNV-ETLYVTNPPYINHVNMI----ESRGFNLKYINFFD--YNLID 158 (405)
T ss_dssp TTTTTCEEEEEEEHHHHHHHHHHHHHH------TTTC-CEEEEESSCCHHHHHHH----HTTTCEEEEECCEE--TTTTE
T ss_pred cccccceEEEEcCchHHHHHHHHHHHH------hcCC-CEEEEeCCCCHhHHHHH----HHcCCeEEEEeccc--cccCC
Confidence 134 35899999999999998874 2237 99999999999876555 55699999995421 11233
Q ss_pred H-HHHHHHHHhccccCCCceEEEEEecc-CCCCcccccH---HHHHHHHHHcCCCEEEEecccccCCcc--------c-c
Q 012991 173 I-INEFKKGIEKGKKDGKMIRLAIIDHI-TSMPCVVIPV---RKLVKICRDEGVDQVFVDAAHAMGSIK--------I-D 238 (452)
Q Consensus 173 ~-~~~l~~~i~~~~~~~~~~~lv~~~~~-~n~tG~~~~l---~~i~~l~~~~~~~~~ivD~a~~~g~~~--------~-~ 238 (452)
+ ++.|++.+++ .+++++|+++.+ +||||.+++. ++|+++|++|++ ++|+|+++..-... + .
T Consensus 159 ~d~~~l~~~l~~----~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~-~vi~De~Y~~l~~~~~~~~~~~~~~ 233 (405)
T 3k7y_A 159 INYDLFLNDLRN----IPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKH-VIIFDIAYQGFGHTNLEEDVLLIRK 233 (405)
T ss_dssp ECHHHHHHHHHH----SCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCC-EEEEEESCTTTSSSSTTGGGHHHHH
T ss_pred cCHHHHHHHHHh----CCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCe-EEEEecCcccccCCCcccchHHHHH
Confidence 4 8999999864 245678877655 8999999984 467889999999 79999997632211 0 0
Q ss_pred c-cccCccEEEEcCcccCcCCCC--cEEEEE---ecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH
Q 012991 239 V-KEIGADFYVSNLHKWFFCPPS--VAFLYC---RKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF 312 (452)
Q Consensus 239 ~-~~~~~d~~~~s~~K~l~g~~G--~G~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 312 (452)
+ ....--+++.|++|. ++++| +|++++ +++++.. +...... ........++...+.++..+++.
T Consensus 234 ~~~~~~~~i~~~S~SK~-~~l~GlRiG~~~~~~~~~~~~~~-~~~~l~~--------~~~~~~~~~~~~~q~~~~~~l~~ 303 (405)
T 3k7y_A 234 FEEKNIAFSVCQSFSKN-MSLYGERAGALHIVCKNQEEKKI-VFNNLCF--------IVRKFYSSPVIHTNRILCQLLNN 303 (405)
T ss_dssp HHTTTCCEEEEEECTTT-SCCTTTTEEEEEEECSSHHHHHH-HHHHHHH--------HHHTTTSSCCHHHHHHHHHHHHC
T ss_pred HHhcCCcEEEEeeCCcc-CCCccccceEEEEEeCCHHHHHH-HHHHHHH--------HHhcccCCCcHHHHHHHHHHhCC
Confidence 1 111234677899996 77666 788764 3333322 1000000 00000012222333333333321
Q ss_pred H---HHhhcCHHHHHHHHHHHHHHHHHHHH----HHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhh
Q 012991 313 V---SRFEGGIDGIMQRNHEQALKMARMLA----NAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRV 382 (452)
Q Consensus 313 ~---~~~~~g~~~~~~~~~~~~~~l~~~L~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 382 (452)
- ..+...++.++++++++++.+.+.|. ++.. +.+..+++ +.++|+.++ . +.++.| +
T Consensus 304 ~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~g--g~f~~~~l~----------~-~~~~~L-~ 369 (405)
T 3k7y_A 304 QNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQR--GLFSFVPLL----------A-KIAEHL-K 369 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCC--SSEEECGGG----------G-GGTTTT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCc--eEEEecCCC----------H-HHHHHH-H
Confidence 0 11111356677888999999999998 7631 45555544 667776553 1 334667 5
Q ss_pred hcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 383 RFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 383 ~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++||.+.+ .+ |||++.. ++++|+.++++|+++++.
T Consensus 370 ~~gV~v~p----------------------~~--Ris~a~~-~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 370 THHIYIIN----------------------NG--RINVSGI-TKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp TTTEECCT----------------------TS--EEEGGGC-CTTHHHHHHHHHHHHHHC
T ss_pred HCCEeecC----------------------CC--eEEEecc-CHHHHHHHHHHHHHHHhh
Confidence 67999841 12 9999753 678899999999998763
No 216
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.89 E-value=9.4e-23 Score=208.43 Aligned_cols=358 Identities=11% Similarity=0.054 Sum_probs=206.0
Q ss_pred eEEeccCCCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhH-----hC--C-C-CCCcEEEecChhHH
Q 012991 40 VARINNGSFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDL-----IN--A-D-DVGEISLVDNATTA 110 (452)
Q Consensus 40 ~~~l~~~~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-----~~--~-~-~~~~i~~t~g~t~a 110 (452)
++.|..+.++..++.+.+++.+.... .. |....+..++++.+++. ++ . . ++++|++|+|++++
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~~-~~-------Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~ea 177 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGILG-CN-------YPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAA 177 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHT-CS-------CCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhhc-CC-------CCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHH
Confidence 56676666666666677766654421 11 11122223344443332 22 2 1 25799999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCC
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGK 189 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~ 189 (452)
+.+++.++... ..+++||+|++++|.|++....... ...|.+++.++.+. +....+ +++|++.+ ..
T Consensus 178 l~~~~~~l~~~---~l~~~Gd~Vlv~~P~y~~~~~~~~~--~~~g~~~~~v~~~~--~~~~~~d~~~l~~~~------~~ 244 (546)
T 2zy4_A 178 MAYIFESLKLN---GLLKAGDKVAIGMPVFTPYIEIPEL--AQYALEEVAINADP--SLNWQYPDSELDKLK------DP 244 (546)
T ss_dssp HHHHHHHHHHT---TSSCTTCEEEEEESCCHHHHHHHHS--TTSCCEEEEEECBG--GGTTBCCHHHHGGGG------ST
T ss_pred HHHHHHHhhhh---hcCCCCCEEEEeCCCCccHHHHHHH--cCCCcEEEEEecCc--ccCCCCCHHHHHHhh------CC
Confidence 99999874210 0257899999999999987554321 23478888885421 111123 78888776 57
Q ss_pred ceEEEEEeccCCCCcccccH---HHHHHHH--HHcCCCEEEEecccccCCc-cccccc--cCccEEEEcCcccCcCCCC-
Q 012991 190 MIRLAIIDHITSMPCVVIPV---RKLVKIC--RDEGVDQVFVDAAHAMGSI-KIDVKE--IGADFYVSNLHKWFFCPPS- 260 (452)
Q Consensus 190 ~~~lv~~~~~~n~tG~~~~l---~~i~~l~--~~~~~~~~ivD~a~~~g~~-~~~~~~--~~~d~~~~s~~K~l~g~~G- 260 (452)
++++|++++++||||.+++. ++|+++| +++|+ ++|+|++++.... ...+.. .+.++++.|++|+ +|.+|
T Consensus 245 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~-~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~-~g~~Gl 322 (546)
T 2zy4_A 245 AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDL-MILTDDVYGTFADDFQSLFAICPENTLLVYSFSKY-FGATGW 322 (546)
T ss_dssp TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTC-EEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTT-TTCGGG
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCc-EEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccc-cCCCCc
Confidence 89999999999999999985 4578888 77899 8999999875432 111111 1356889999996 67667
Q ss_pred -cEEEEEecC-ccccCCCCCc-------eeccCC-CCc-cc---------------ccccccccCccccccHH--HHHHH
Q 012991 261 -VAFLYCRKS-ILSSDMHHPV-------VSHEFG-NGL-PI---------------ESAWIGTRDYSAQLVIP--SAVTF 312 (452)
Q Consensus 261 -~G~l~~~~~-~~~~~l~~~~-------~~~~~~-~~~-~~---------------~~~~~~~~~~~~~~~~~--~al~~ 312 (452)
+|+++++++ +++. +.... +...+. ... +. ........+...+.++. +...+
T Consensus 323 RiG~~~~~~~~l~~~-l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~al 401 (546)
T 2zy4_A 323 RLGVVAAHQQNVFDL-ALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFAL 401 (546)
T ss_dssp CEEEEEEESSCHHHH-HHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHH-HHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHH
Confidence 799999876 5443 10000 000000 000 00 00001112222222211 01123
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCcccc--CC--------hh-hHHHHHHHHh
Q 012991 313 VSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRV--MG--------ED-DALRLRGHLR 381 (452)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~-~~~~l~~~L~ 381 (452)
+.+.+.-.+.+++.++++.+.+.+.|. . ++.+..+. .+.++|+.++.+... .. .. +...+.+.|.
T Consensus 402 l~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~ 477 (546)
T 2zy4_A 402 MDEADEYKHTLKQLIRRRETTLYRELG-M-PPLRDENA--VDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIAD 477 (546)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTB--CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCC--eeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHH
Confidence 221101245556666666666666653 2 22222222 366778887421000 00 01 2334556665
Q ss_pred hhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 382 VRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 382 ~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+ .||.+.++..+. ...+++||++.. .+++++++++++|++++++
T Consensus 478 ~-~gV~v~pG~~F~---------------~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 478 E-TGIVLLPGRGFG---------------SNRPSGRASLAN-LNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp H-HSCCCEESSCTT---------------CSSCEEEEESSS-SCHHHHHHHHHHHHHHHHH
T ss_pred H-CCEEEeCccccC---------------CCCCeEEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence 5 599998776652 235789999973 4788999999999888753
No 217
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.88 E-value=4.8e-21 Score=190.75 Aligned_cols=329 Identities=11% Similarity=0.040 Sum_probs=205.2
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|+.++.+.+++.+.+.... .+.+ ..+...++.++++++++ + .++++|++||++|+..++.... . .
T Consensus 66 lG~~~p~v~~a~~~~~~~~~-----~~~~-~~~~~~~la~~l~~~~~-~-~~~v~~~~ggsea~~~al~~a~-~-----~ 131 (427)
T 3fq8_A 66 CGHAHPEVIEALKVAMEKGT-----SFGA-PCALENVLAEMVNDAVP-S-IEMVRFVNSGTEACMAVLRIMR-A-----Y 131 (427)
T ss_dssp TCBTCHHHHHHHHHHHTTCS-----CCSS-CCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHH-H-----H
T ss_pred cCCCCHHHHHHHHHHHHhCC-----CcCC-CCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHH-H-----h
Confidence 34568889999988765321 1122 45677889999999997 3 5899999999999999996431 1 2
Q ss_pred CCCCEEEEeCCcchhHHHHHHHH----HHh------cC------cEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAY----VTR------AG------GSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~----a~~------~g------~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
..+++|++.++.|++........ ... .| ..+..++ .++ +++|++.+++. .+++
T Consensus 132 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d----~~~le~~l~~~---~~~~ 200 (427)
T 3fq8_A 132 TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP----YND----LEAVKALFAEN---PGEI 200 (427)
T ss_dssp HCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEE----TTC----HHHHHHHHHHS---TTTE
T ss_pred hCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecC----CCC----HHHHHHHHHhC---CCCE
Confidence 34578999888887632211000 000 01 1133342 222 68888888643 3578
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc---CCc-cccccccCccEEEEcCcccCcCCCCcEE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM---GSI-KIDVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~---g~~-~~~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|+. |.. ..+.....+|++++| |++.++..+|+
T Consensus 201 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~~G~ 277 (427)
T 3fq8_A 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDA-LLVFDEVITGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGA 277 (427)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTC-EEEEECTTTBTTTBTTHHHHHTTCCCSEEEEC--GGGGTTSSCEE
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccccccCcchhhHhcCCCCChhhhh--hhhhCCcceEE
Confidence 99999999999999998 9999999999999 8999999972 111 112223356776555 98765444899
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG 343 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~ 343 (452)
+++++++++. +. +......+ .+.+.+...+.+..++++.+.+ +.+.++++++.+++++.|.++..
T Consensus 278 ~~~~~~~~~~-~~-~~~~~~~~--------~t~~~~~~~~aa~~aal~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~ 342 (427)
T 3fq8_A 278 YGGKREIMQL-VA-PAGPMYQA--------GTLSGNPLAMTAGIKTLELLRQ-----PGTYEYLDQITKRLSDGLLAIAQ 342 (427)
T ss_dssp EEECHHHHTT-BT-TTSSBCCC--------CTTTTCHHHHHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcHHHHHh-hc-cCCCcccc--------CCCCcCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888775 21 11000000 0011233333333344444331 45677788888888888876521
Q ss_pred -CCcCCCcccccceEEEEcCCccc-------cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccce
Q 012991 344 -TSLGSPPEICAAMVMVGLPSRLR-------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGY 415 (452)
Q Consensus 344 -~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (452)
..+.......+.++++.+++... ..+.....++.+.|.++ ||.+..+. ..
T Consensus 343 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~--------------------~~- 400 (427)
T 3fq8_A 343 ETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQ--------------------FE- 400 (427)
T ss_dssp HTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST--------------------TS-
T ss_pred hCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCC--------------------CC-
Confidence 12222222346788888753100 01122356788888765 99985321 12
Q ss_pred EEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 416 ARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 416 iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
|++++..+|++|+++++++|++++++
T Consensus 401 -r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 401 -AGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp -CEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 44445557999999999999998753
No 218
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.88 E-value=2.1e-20 Score=183.22 Aligned_cols=336 Identities=15% Similarity=0.079 Sum_probs=210.6
Q ss_pred CCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHH
Q 012991 69 QPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQ 148 (452)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~ 148 (452)
++....+.....+.+.+...+.+++|.++....++++|+|.+..+++.+.+|.. ..+++.|++++..|.|+.+++.
T Consensus 87 ~~~~~~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~----~~~~~~viv~r~aHkSv~kAl~ 162 (450)
T 3bc8_A 87 QPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----RPKAKYIIWPRIDQKSCFKSMV 162 (450)
T ss_dssp CCSBHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH----CTTCCEEEEECCCCHHHHHHHH
T ss_pred CccccCCcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchh----hcCCCEEEEECCcHHHHHHHHH
Confidence 343333344567788899999999999855567999999855555555554432 1236899999999999988876
Q ss_pred HHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEe
Q 012991 149 AYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 149 ~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD 227 (452)
. .|++++++++.. .++...+ ++.|+++|++.. ...+.+|+.+..++.+|.+.|+++|+++|++||+ ++|||
T Consensus 163 l----~Gl~p~~v~~~~-~~~~~~id~~~le~aI~~~~--~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi-~l~VD 234 (450)
T 3bc8_A 163 T----AGFEPVVIENVL-EGDELRTDLKAVEAKIQELG--PEHILCLHSTTACFAPRVPDRLEELAVICANYDI-PHVVN 234 (450)
T ss_dssp H----TTCEEEEECCEE-ETTEEECCHHHHHHHHHHHC--GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTC-CEEEE
T ss_pred H----cCCeeEEEEeee-cCccCCcCHHHHHHHHHhcC--CCCEEEEEEECCcCCCceecCHHHHHHHHHHCCC-eEEEE
Confidence 5 599999996421 1234455 999999998642 1245556665445446689999999999999999 59999
Q ss_pred cccccCCccc---ccc--c-cCccEEEEcCcccCcCCCCcEEEEEec-CccccCCCCCceeccCCCCcccccccccccCc
Q 012991 228 AAHAMGSIKI---DVK--E-IGADFYVSNLHKWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300 (452)
Q Consensus 228 ~a~~~g~~~~---~~~--~-~~~d~~~~s~~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (452)
+||+.-.... ... . -++|+++.|.|||++.|.|.+++++++ +.+.. + ...+.+. .+++|
T Consensus 235 ~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~-~-----~~~~~g~------~s~Sp-- 300 (450)
T 3bc8_A 235 NAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD-I-----SKMYPGR------ASASP-- 300 (450)
T ss_dssp CTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHH-H-----HHHSCSC------BCSHH--
T ss_pred CCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHH-H-----HHHhhcC------CcccH--
Confidence 9998633211 111 1 269999999999999999989988863 33332 1 0011110 01122
Q ss_pred cccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCccccCChhhHHHHH
Q 012991 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLR 377 (452)
Q Consensus 301 ~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (452)
.+.++..+..... +|+.++.++..++++++++.|.+++ +.++...+.. ..-..+.+.. +......+..++.
T Consensus 301 --sL~l~~~l~~~G~--~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~-~~~~~~~l~~-~~~~~~~D~tkl~ 374 (450)
T 3bc8_A 301 --SLDVLITLLSLGC--SGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN-PISLAMTLKT-IDGHHDKAVTQLG 374 (450)
T ss_dssp --HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTC-SSEEEEECTT-TSSSSSCHHHHHH
T ss_pred --HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccC-CCcceeeccc-ccccccCCCceeE
Confidence 1223333322222 2566777777889999999999888 8877665432 1112233321 0111134556666
Q ss_pred HHHhhh--cceEeee--------cccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 378 GHLRVR--FGVEVPI--------HYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 378 ~~L~~~--~gI~v~~--------~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
-.+... .|..+.. +.....-|.+.. .....++-+.++..++++|+++++++|+++.+..
T Consensus 375 i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E-------~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~ 443 (450)
T 3bc8_A 375 SMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHAD-------NYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 443 (450)
T ss_dssp HHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSS-------CCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCccceeeecccccchhHHHHHHcCCeee-------cCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 666432 1333320 000000011100 2345678888888899999999999999997653
No 219
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.88 E-value=4.6e-23 Score=205.07 Aligned_cols=335 Identities=10% Similarity=-0.015 Sum_probs=213.0
Q ss_pred CCCeEEeccCCCCC-CcHHHHHHHHHHHHHHhcCCchhhhhhhhH-H---HHHHHHHHHhHhC------CCCCCcEEEec
Q 012991 37 QHGVARINNGSFGS-CPKSVLADQQKWQLKFLQQPDDFYFNSLRK-G---ILESRAAVKDLIN------ADDVGEISLVD 105 (452)
Q Consensus 37 ~~~~~~l~~~~~~~-~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~la~~~~------~~~~~~i~~t~ 105 (452)
...++.|+.+.+.. .|+.+.+++.+.+. ..+...+.|.... + ..++|++++++++ ++ +++|++|+
T Consensus 55 ~~~~i~l~~g~~~~~~~~~v~~a~~~~l~---~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~-~~~iv~t~ 130 (427)
T 2hox_A 55 QGCSADVASGDGLFLEEYWKQHKEASAVL---VSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAK-DRYIVFGV 130 (427)
T ss_dssp TTCCEECCSCCCGGGHHHHTTSHHHHCEE---ECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCT-TCEEEEES
T ss_pred CCceEEecCcCCCCCCCHHHHHhHHhhhh---cCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCC-CCEEEEeC
Confidence 34577888776653 33455556554431 1111111122222 3 5778888888886 43 68999999
Q ss_pred ChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccc
Q 012991 106 NATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGK 185 (452)
Q Consensus 106 g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~ 185 (452)
|+++++.+++.++.+......+++||+|+++.|.|++....+ +..|.+++.+.+ + ++.|++++
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~----d-----~~~l~~~~---- 193 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT----KYFDKKGYVWAG----N-----AANYVNVS---- 193 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH----HHSCBTTEEEEE----E-----GGGGTTCS----
T ss_pred CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHH----HHcCCeeeeecC----C-----HHHHHHhh----
Confidence 999999999998721000000478999999999998876555 445777665432 2 46666666
Q ss_pred cCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-ccccccCccEEEEcCcccCcCCCC--cE
Q 012991 186 KDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK-IDVKEIGADFYVSNLHKWFFCPPS--VA 262 (452)
Q Consensus 186 ~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~-~~~~~~~~d~~~~s~~K~l~g~~G--~G 262 (452)
.+++++|++++|+||||.+++ +. ++ ++ ..+.|+++...... .++. .+.++++.|+||. +|++| +|
T Consensus 194 --~~~~k~v~l~~p~NPtG~~~~-~~----l~--~~-~~i~d~~~~~~~~s~~~~~-~~~~i~~~S~SK~-~g~~G~RiG 261 (427)
T 2hox_A 194 --NPEQYIEMVTSPNNPEGLLRH-AV----IK--GC-KSIYDMVYYWPHYTPIKYK-ADEDILLFTMSKF-TGHSGSRFG 261 (427)
T ss_dssp --CGGGEEEEEESSCTTTCCCCC-CS----ST--TC-EEEEECTTCSTTTSCCCSC-BCCSEEEEEHHHH-TSCGGGCCE
T ss_pred --cCCceEEEEcCCCCCcccccH-HH----Hc--CC-CEEEeecccCCCCCccccC-CCceEEEEeChhc-CCCCCceEE
Confidence 457899999999999999999 42 22 67 58889876432211 1222 4578999999995 77777 89
Q ss_pred EEEEe-cCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHH--------hhcCHHHHHHHHHHHHHH
Q 012991 263 FLYCR-KSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSR--------FEGGIDGIMQRNHEQALK 333 (452)
Q Consensus 263 ~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~g~~~~~~~~~~~~~~ 333 (452)
+++++ +++++. + .... .......+...+.++..+++...+ +..-++..++++++++++
T Consensus 262 ~~~~~~~~l~~~-l-~~~~-----------~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (427)
T 2hox_A 262 WALIKDESVYNN-L-LNYM-----------TKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVN 328 (427)
T ss_dssp EEEECCHHHHHH-H-HHHH-----------HHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHH-H-HHHH-----------HhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 99994 666654 1 1110 000112233333333334432211 011245567788888999
Q ss_pred HHHHHHHHcCCCc--CC-Cc---------ccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCC
Q 012991 334 MARMLANAWGTSL--GS-PP---------EICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQP 401 (452)
Q Consensus 334 l~~~L~~~~~~~~--~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~ 401 (452)
+.+.|.+++++.+ .. +. ...+.++|+.++. +..++.+.|.+++||.+.++..+.
T Consensus 329 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--------~~~~~~~~ll~~~gI~v~pg~~f~------ 394 (427)
T 2hox_A 329 ITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--------EEDKDCYQTFQNGRINTQNGVGFE------ 394 (427)
T ss_dssp HHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--------GGGCSHHHHHHHTTEECEEGGGGT------
T ss_pred HHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--------cHHHHHHHHHHHCCEEEcCCCccC------
Confidence 9999988767665 22 21 1226788888861 334566766545699998776652
Q ss_pred CCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 402 QAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 402 ~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++++|+|+.. ++++++++++.|+++++.
T Consensus 395 ---------~~~~~~Ris~~~--~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 395 ---------ASSRYVRLSLIK--TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp ---------SCTTEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred ---------CCCCEEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 135799999985 889999999999999865
No 220
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.88 E-value=9.6e-22 Score=194.05 Aligned_cols=303 Identities=17% Similarity=0.165 Sum_probs=198.1
Q ss_pred HHHHhhhccCCCCeEEeccCCCCCCcHHHHHHHHHHHHHHh-cCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEE--
Q 012991 27 AEIRDEFSHHQHGVARINNGSFGSCPKSVLADQQKWQLKFL-QQPDDFYFNSLRKGILESRAAVKDLINADDVGEISL-- 103 (452)
Q Consensus 27 ~~ir~~~~~~~~~~~~l~~~~~~~~p~~v~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~-- 103 (452)
.++++.|+.. +.+++.|. ..|++++.+...... ..+...+.+. +...+++++.+++++|.+ ..+++
T Consensus 29 ~~~~~~~~~~-~~i~~~n~-------~~Vl~a~~~~~~~~~~~~~~~gy~Y~-~~g~~~Le~~lA~l~g~e--~alv~p~ 97 (427)
T 3hvy_A 29 NDVEKEFKYY-DEIREYNQ-------LKVLKAFQEERISESHFTNSSGYGYN-DIGRDSLDRVYANIFNTE--SAFVRPH 97 (427)
T ss_dssp HHHHHHHHHH-HHHHHHHH-------HHHHHHHHHTTCCGGGSCCCCTTCTT-CHHHHHHHHHHHHHHTCS--EEEEETT
T ss_pred HHHHHHHHHH-HHHHHhhH-------HHHHHHHHHHHHHHHhcccCcCCCCC-chhHHHHHHHHHHHhCCC--ceEEeCC
Confidence 4445555532 34445553 457777766432110 0111222222 224788999999999995 34443
Q ss_pred ecChhHHHHHHHHHhhcccccCCCCCCCEEEEeC-CcchhHHHHHH-------HHHHhcCcEEEEEeCCCCCCChHHH-H
Q 012991 104 VDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLH-CAFQAVKKSIQ-------AYVTRAGGSVVEVQLPFPLASEEEI-I 174 (452)
Q Consensus 104 t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~-~~~~s~~~~~~-------~~a~~~g~~v~~~~~~~~~~~~~~~-~ 174 (452)
++|||+|+..++.++ +++||+|++++ +.|.+....+. ..+...|++++.++. +++.+ +
T Consensus 98 ~~sGt~A~~~al~al--------l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-----~~~~~d~ 164 (427)
T 3hvy_A 98 FVNGTHAIGAALFGN--------LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-----KDGKVDI 164 (427)
T ss_dssp CCSHHHHHHHHHHHT--------CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-----BTTBCCH
T ss_pred CCcHHHHHHHHHHHh--------cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-----CCCCcCH
Confidence 789999999999876 68999999998 89987653330 113456999998843 22333 8
Q ss_pred HHHHHHHhccccCCCceEEEEEec----cCCCCcccccHHHHHHHHHH--cCCCEEEEecccccCCccccccccCccEEE
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDH----ITSMPCVVIPVRKLVKICRD--EGVDQVFVDAAHAMGSIKIDVKEIGADFYV 248 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~ 248 (452)
+++++++++ .++|++|++++ ++||+|.+.|+++|+++|++ +|+ ++++|++++.+.........++|+++
T Consensus 165 e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~-~livD~a~~~~~~~~~p~~~gaDiv~ 239 (427)
T 3hvy_A 165 NTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENV-IVFVDNCYGEFVEEKEPTDVGADIIA 239 (427)
T ss_dssp HHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSS-EEEEECTTCTTTSSSCGGGGTCSEEE
T ss_pred HHHHHHhhC----CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCC-EEEEECCccccccCCCCcccCCeEEE
Confidence 999999953 26899999999 99999999999999999999 899 89999999887643333445789999
Q ss_pred EcCcccCcC---CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHH
Q 012991 249 SNLHKWFFC---PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQ 325 (452)
Q Consensus 249 ~s~~K~l~g---~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~ 325 (452)
.|+||+++| +.| |+++.++++++. +...... .+.+.. ..++. .....+++-+.. ....++
T Consensus 240 ~S~sK~lgg~g~~~G-G~i~~~~~li~~-l~~~~~~--~~~g~~------~~~~~---~~a~~~~~gl~~----~~~r~~ 302 (427)
T 3hvy_A 240 GSLIKNIGGGIATTG-GYIAGKEEYVTQ-ATFRVTV--PGIGGE------CGSTF---GVMRSLYEGLFM----APHVTI 302 (427)
T ss_dssp EETTSGGGTTTCCSC-EEEEECHHHHHH-HHHHHSC--TTTGGG------CCCCT---TCHHHHHHHHHH----HHHHHH
T ss_pred ECCcccccccccceE-EEEEECHHHHHH-HHHHhhc--CCcccc------cCCCH---HHHHHHHHhHhH----HHHHHH
Confidence 999998766 454 999999888775 2110000 011000 01111 112333333332 344566
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcc--cccceEEEEcCCccccCChhhHHHHHHHHhh
Q 012991 326 RNHEQALKMARMLANAWGTSLGSPPE--ICAAMVMVGLPSRLRVMGEDDALRLRGHLRV 382 (452)
Q Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 382 (452)
+..+++.++.+.|.++ ++++...+. ....++.|.+. +.....++++.|..
T Consensus 303 ~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~li~~~~l~------~~~~~~~f~~~l~~ 354 (427)
T 3hvy_A 303 EAVKGAVFCARIMELA-GFDVLPKYNDKRTDIIQAIKFN------DEKKLIDFIKGIQT 354 (427)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSEEEEECS------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCeecCCCCCCCceEEEEEeCC------CHHHHHHHHHHhcc
Confidence 7888999999999987 566532221 11237777774 34566778888854
No 221
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.88 E-value=2.8e-21 Score=192.88 Aligned_cols=337 Identities=13% Similarity=0.117 Sum_probs=211.6
Q ss_pred CCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
+..++.+..+ ..+..++.+.+++.+.+... . . +. ...+...+++++++++++ . .++++|++|||+|+.
T Consensus 55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~--~-~--~~-~~~~~~~~l~~~la~~~~-~-~~~v~~~~sgseA~~ 126 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGHKHPRVLEAVEEALARG--W-L--YG-APGEAEVLLAEKILGYVK-R-GGMIRFVNSGTEATM 126 (434)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--S-C--CS-SCCHHHHHHHHHHHHHHC-T-TCEEEEESSHHHHHH
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC--C-C--CC-CCCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHH
Confidence 4445555433 23556788999999887541 1 1 11 134567889999999995 2 479999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHH----------HhcCc------EEEEEeCCCCCCChHHHHHH
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYV----------TRAGG------SVVEVQLPFPLASEEEIINE 176 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a----------~~~g~------~v~~~~~~~~~~~~~~~~~~ 176 (452)
.++.+. +. +.++++|++.++.|++.......++ ...|+ .+..++ .++ ++.
T Consensus 127 ~al~~a-r~-----~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~----~~d----~~~ 192 (434)
T 2epj_A 127 TAIRLA-RG-----YTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTP----YND----VEA 192 (434)
T ss_dssp HHHHHH-HH-----HHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEE----TTC----HHH
T ss_pred HHHHHH-HH-----hhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecC----CCC----HHH
Confidence 999862 11 2456788888888876432210000 00122 244443 222 678
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCc---c--ccccccCccEE
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSI---K--IDVKEIGADFY 247 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~---~--~~~~~~~~d~~ 247 (452)
|++.+++. .+++++|+++..++++|.+.| +++|.++|++||+ ++|+|++|+ |.. . .+.....+|++
T Consensus 193 le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~-g~~~g~~~~~~~~~~~~di~ 267 (434)
T 2epj_A 193 LERVFAEY---GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA-LLILDEVVT-GFRLGLEGAQGYFNIEGDII 267 (434)
T ss_dssp HHHHHHHH---GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC-EEEEEETTT-TTTSSTTHHHHHHTCCCSEE
T ss_pred HHHHHHhC---CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC-EEEEEcchh-ceeCCcchhhHHhCCCCCee
Confidence 88888632 247889999888888999988 9999999999999 899999998 221 0 11112347876
Q ss_pred EEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHH
Q 012991 248 VSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRN 327 (452)
Q Consensus 248 ~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~ 327 (452)
|++|+++++..+|++++++++++. +. +.... . ...+.+.+...+.+..++++.+.+ +.+.+++
T Consensus 268 --s~sK~l~~G~~~G~v~~~~~~~~~-l~-~~~~~-------~-~~~t~~~~~~~~aa~~a~l~~~~~-----~~~~~~~ 330 (434)
T 2epj_A 268 --VLGKIIGGGFPVGAVAGSREVMSL-LT-PQGKV-------F-NAGTFNAHPITMAAGLATLKALEE-----EPVYSVS 330 (434)
T ss_dssp --EEEGGGGTTSSCEEEEECHHHHTT-BT-TTSSB-------C-CCCTTTTCHHHHHHHHHHHHHHHH-----SCHHHHH
T ss_pred --eecchhcCCcceeeeeecHHHHHh-hc-cCCCc-------c-cCCCCCcCHHHHHHHHHHHHHHHh-----cCHHHHH
Confidence 455987664347999999887765 21 11000 0 000112333344445556665553 3456778
Q ss_pred HHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCcc--c-----cCChhhHHHHHHHHhhhcceEeeecccCCCC
Q 012991 328 HEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRL--R-----VMGEDDALRLRGHLRVRFGVEVPIHYQAPKD 397 (452)
Q Consensus 328 ~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~ 397 (452)
+++.+++.+.|.++. ++.. .....+.++++.+++.. . ..+..+..++.+.|.++ ||.+..+.
T Consensus 331 ~~~~~~l~~~L~~~~~~~~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----- 402 (434)
T 2epj_A 331 REAAKALEEAASEVLDRTGLPY--TINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFIAPSN----- 402 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCE--EEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST-----
T ss_pred HHHHHHHHHHHHHHHhhCCCcE--EEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEEeccC-----
Confidence 888888888887652 3321 11123678888876200 0 00123466788888764 99985321
Q ss_pred CCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 398 DGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
...+|++ ..+|++|+++++++|++++++
T Consensus 403 ---------------~~~~~~~--~~~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 403 ---------------LEAVFTG--LPHQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp ---------------TSCEECC--TTCSHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCcEEEe--ccCCHHHHHHHHHHHHHHHHH
Confidence 1346665 456999999999999998764
No 222
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.88 E-value=8.7e-21 Score=188.99 Aligned_cols=325 Identities=12% Similarity=0.079 Sum_probs=209.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|+.++.|.+++.+.+..... + ....+...+++++++++++ + .++++|++|||+|+..++..+. ..
T Consensus 67 lG~~~p~v~~A~~~~~~~~~~-----~-~~~~~~~~~l~~~la~~~~-~-~~~v~~~~~Gsea~~~ai~~a~------~~ 132 (429)
T 3k28_A 67 HGHANDRVVEALKAVAERGTS-----F-GAPTEIENKLAKLVIERVP-S-IEIVRMVNSGTEATMSALRLAR------GY 132 (429)
T ss_dssp TCBSCHHHHHHHHHHHHHCSC-----C-SSCCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHH------HH
T ss_pred cCCCCHHHHHHHHHHHhhCcC-----c-CCCCHHHHHHHHHHHHhCC-C-CCEEEEeCChHHHHHHHHHHHH------Hh
Confidence 345688899999988765311 1 1234567888999999987 2 5899999999999999998652 11
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCc-------------------EEEEEeCCCCCCChHHHHHHHHHHHhccccCC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGG-------------------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDG 188 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-------------------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 188 (452)
.++++|++.++.|++....... ..|. .+..++ .++ +++|++++++. .
T Consensus 133 ~~~~~vi~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d----~~~le~~l~~~---~ 198 (429)
T 3k28_A 133 TGRNKILKFIGCYHGHGDSLLI---KAGSGVATLGLPDSPGVPEGVAKNTITVA----YND----LESVKYAFEQF---G 198 (429)
T ss_dssp HTCCEEEEEETCCCCSCGGGCS---SCCTTC-----CCCTTCCHHHHTTEEEEE----TTC----HHHHHHHHHHH---G
T ss_pred hCCCEEEEECCCcCCCcHHHHH---hcCCcccccCCCCcCCCCCcccCceeecC----CCC----HHHHHHHHHhC---C
Confidence 3567899988888754322110 0111 222331 122 67888888642 2
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccC---Cc-cccccccCccEEEEcCcccCcCCCC
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMG---SI-KIDVKEIGADFYVSNLHKWFFCPPS 260 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g---~~-~~~~~~~~~d~~~~s~~K~l~g~~G 260 (452)
+++++|+++.+++++|.+.+ +++|.++|++||+ ++|+|++|..- .. ..+.....+|++++ +|++.++..
T Consensus 199 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~g~~~g~~~~~~~~~~~~di~t~--sK~~~~G~~ 275 (429)
T 3k28_A 199 DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGA-LLIFDEVMTGFRVAYNCGQGYYGVTPDLTCL--GKVIGGGLP 275 (429)
T ss_dssp GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTSSTTHHHHHHTCCCSEEEE--CGGGGTTSC
T ss_pred CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC-EEEEeccccccccCcchHHHHhCCCCceehh--hhhhcCCCC
Confidence 57889999988888999988 9999999999999 89999998621 10 11122234677665 598766555
Q ss_pred cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 012991 261 VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLAN 340 (452)
Q Consensus 261 ~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 340 (452)
+|++++++++++. +. +.. ....+.+......++.+++..+... . +.+.++++++++++++.|.+
T Consensus 276 iG~~~~~~~~~~~-~~-~~~-----------~~~~~~t~~~~~~a~aaa~aal~~~--~-~~~~~~~~~~~~~l~~~L~~ 339 (429)
T 3k28_A 276 VGAYGGKAEIMRQ-VA-PSG-----------PIYQAGTLSGNPLAMAAGYETLVQL--T-PESYVEFERKAEMLEAGLRK 339 (429)
T ss_dssp CEEEEECHHHHTT-BT-TTS-----------SBCCCCTTTTCHHHHHHHHHHHHTC--C-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcHHHHhh-hc-cCC-----------CccccCCCCCChHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHH
Confidence 8999999888775 21 110 0001111222334444455555543 3 67888889999999999887
Q ss_pred HcC-CCcCCCcccccceEEEEcCCccc-------cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCc
Q 012991 341 AWG-TSLGSPPEICAAMVMVGLPSRLR-------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGII 412 (452)
Q Consensus 341 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
+.. ..........+.++++.+.+... ..+.....++.+.|.++ ||.+..+ .
T Consensus 340 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~--------------------~ 398 (429)
T 3k28_A 340 AAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPS--------------------Q 398 (429)
T ss_dssp HHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSS--------------------T
T ss_pred HHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecC--------------------C
Confidence 521 12222222336677777642100 01223356788888775 9998532 1
Q ss_pred cceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 413 TGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 413 ~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+.+|+++ .+|++|+++++++|++++++
T Consensus 399 ~~~~r~~~--~~t~e~i~~~l~~l~~~l~~ 426 (429)
T 3k28_A 399 FEGLFLST--VHSDADIEATIAAAEIAMSK 426 (429)
T ss_dssp TSCBCCCT--TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEC--CCCHHHHHHHHHHHHHHHHH
Confidence 24678865 45999999999999999865
No 223
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.88 E-value=2.1e-21 Score=201.32 Aligned_cols=311 Identities=12% Similarity=0.040 Sum_probs=213.1
Q ss_pred hhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCc
Q 012991 77 SLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGG 156 (452)
Q Consensus 77 ~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~ 156 (452)
.+.....++++.+|+++|++ ..+++++|++.|+..++.++ +++||+|++++++|.|+..++ ...|+
T Consensus 192 ~~~g~i~eaE~~lA~~fGa~--~a~~v~nGts~An~~ai~al--------~~pGD~VLv~r~~H~S~~~~l----~lsGa 257 (715)
T 3n75_A 192 DHSGPHKEAEQYIARVFNAD--RSYMVTNGTSTANKIVGMYS--------APAGSTILIDRNCHKSLTHLM----MMSDV 257 (715)
T ss_dssp TTBTHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHH--------CCTTCEEEEESSCCHHHHHHH----HHSCC
T ss_pred CCcHHHHHHHHHHHHHhCCC--CceEECcHHHHHHHHHHHHh--------CCCCCEEEECCCccHHHHHHH----HHcCC
Confidence 44556899999999999996 55666677789999999987 589999999999999988775 44699
Q ss_pred EEEEEeCCCCCCCh--------HH-HHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEe
Q 012991 157 SVVEVQLPFPLASE--------EE-IINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 157 ~v~~~~~~~~~~~~--------~~-~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD 227 (452)
++++++... +.. .. .++.+++++++.+. .+++++++++++ |++|.+.|+++|+++|+++ .+++|
T Consensus 258 ~pv~v~~~~--~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~---~livD 330 (715)
T 3n75_A 258 TPIYFRPTR--NAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK---SIHFD 330 (715)
T ss_dssp EEEEECCCB--CTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCS---EEEEE
T ss_pred EEEEEeccc--cccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcC---cEEEc
Confidence 999996531 111 11 27889999975311 123458999999 8999999999999999754 37899
Q ss_pred cccccCCc--cc--ccccc--C--ccEE---EEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCccccccccc
Q 012991 228 AAHAMGSI--KI--DVKEI--G--ADFY---VSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIG 296 (452)
Q Consensus 228 ~a~~~g~~--~~--~~~~~--~--~d~~---~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (452)
+||+.+.. +. +...+ + +|++ +.|+||++.|+.+.|+++++++.... ..... ....+++
T Consensus 331 EAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~-~~~~~----------~~~~~ST 399 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEE-TFNEA----------YMMHTTT 399 (715)
T ss_dssp CTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHH-HHHHH----------HHHTSCS
T ss_pred cccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHH-HHHHH----------HHhhcCC
Confidence 99986641 11 11111 2 5765 89999998888788999998763221 00000 1223357
Q ss_pred ccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC------CCcCCCccc------------------
Q 012991 297 TRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG------TSLGSPPEI------------------ 352 (452)
Q Consensus 297 ~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~~~~------------------ 352 (452)
++++..++++.++++++... .| +.++++..++++++++.|.++++ +++..++.-
T Consensus 400 Spsy~~~AsldaA~~~~~~~-~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~ 477 (715)
T 3n75_A 400 SPHYGIVASTETAAAMMKGN-AG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFK 477 (715)
T ss_dssp SCCHHHHHHHHHHHHHHSHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCT
T ss_pred CchHHHHHHHHHHHHHHHhh-cc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCccccccccc
Confidence 88888888898888887631 13 45778899999999999988753 233322210
Q ss_pred ---c------cceEEEEcCCcccc----CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEec
Q 012991 353 ---C------AAMVMVGLPSRLRV----MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARIS 419 (452)
Q Consensus 353 ---~------~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 419 (452)
. ..=+.+..+..... ..+.++..+.+.|++ +||.+-.. +...+-+-
T Consensus 478 ~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~-~~I~~E~~--------------------d~~~vl~l 536 (715)
T 3n75_A 478 NIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDE-HGIVVEKT--------------------GPYNLLFL 536 (715)
T ss_dssp TCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHH-TTCCCSEE--------------------ETTEEEEE
T ss_pred ccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHH-CCCEEEec--------------------CCCcEEEE
Confidence 0 00123333321000 115677889999965 59987422 12455555
Q ss_pred ccccCCHHHHHHHHHHHHHHHhc
Q 012991 420 HQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 420 ~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
++..+|.+++++|+++|.++.+.
T Consensus 537 ~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 537 FSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHH
Confidence 66667999999999999988653
No 224
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.88 E-value=9.4e-21 Score=190.08 Aligned_cols=338 Identities=12% Similarity=0.048 Sum_probs=200.6
Q ss_pred CCCeEEeccCC----CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHH
Q 012991 37 QHGVARINNGS----FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAA 112 (452)
Q Consensus 37 ~~~~~~l~~~~----~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~ 112 (452)
+..++.+..+. .++.++.+.+++.+.+... . .+. ...+..+++.+++++.++ + .+++++++||++|+.
T Consensus 56 g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~--~---~~~-~~~~~~~~la~~l~~~~~-~-~~~v~~~~gg~eA~~ 127 (453)
T 2cy8_A 56 GNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG--V---QYA-ASHPLEVRWAERIVAAFP-S-IRKLRFTGSGTETTL 127 (453)
T ss_dssp CCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT--C---SSC-SSCHHHHHHHHHHHHHCT-T-CSEEEEESCHHHHHH
T ss_pred CCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC--C---CCC-CCCHHHHHHHHHHHhhCC-C-CCEEEEeCCHHHHHH
Confidence 34455554332 3456788999998877541 1 111 245667888888888876 3 589999999999999
Q ss_pred HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHH-------hcCcE------EEEEeCCCCCCChHHHHHHHHH
Q 012991 113 IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVT-------RAGGS------VVEVQLPFPLASEEEIINEFKK 179 (452)
Q Consensus 113 ~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~-------~~g~~------v~~~~~~~~~~~~~~~~~~l~~ 179 (452)
.++.+. +. +.++++|++.++.|++.......... ..|+. +..+ +.++ +++|++
T Consensus 128 ~al~~a-r~-----~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~d----~~~le~ 193 (453)
T 2cy8_A 128 LALRVA-RA-----FTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLI----RPDD----IEGMRE 193 (453)
T ss_dssp HHHHHH-HH-----HHCCCEEEEECC----------------------------CGGGEEEE----CTTC----HHHHHH
T ss_pred HHHHHH-HH-----hhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeec----CCCC----HHHHHH
Confidence 999862 11 13457888888988865443322110 01322 2333 2222 688888
Q ss_pred HHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCc-c----ccccccCccEEEEc
Q 012991 180 GIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSI-K----IDVKEIGADFYVSN 250 (452)
Q Consensus 180 ~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~-~----~~~~~~~~d~~~~s 250 (452)
++++. .+++++|+++..++++|.+.| +++|.++|++||+ ++|+|++|+ |.. . .+.....+|++ |
T Consensus 194 ~l~~~---~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s 266 (453)
T 2cy8_A 194 VFANH---GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGA-LFILDEVIS-GFRVGNHGMQALLDVQPDLT--C 266 (453)
T ss_dssp HHHHH---GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTC-EEEEECTTT-TTTTCTTHHHHHHTCCCSEE--E
T ss_pred HHHhc---CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecCcc-ccccCchhhhHHhCCCCcEE--E
Confidence 88632 247889988887788999887 9999999999999 899999997 331 0 11112346876 5
Q ss_pred CcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHH-HHHhhcCHHHHHHHHHH
Q 012991 251 LHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTF-VSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 251 ~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~g~~~~~~~~~~ 329 (452)
++|++.++..+|++++++++++. +..... +. .....+.+.+...+.+..++++. + . +.+.+++++
T Consensus 267 ~sK~l~~G~~~G~v~~~~~~~~~-l~~~~~----~~---~~~~~t~~~n~~~~aa~~aal~~~~-~-----~~~~~~~~~ 332 (453)
T 2cy8_A 267 LAKASAGGLPGGILGGREDVMGV-LSRGSD----RK---VLHQGTFTGNPITAAAAIAAIDTIL-E-----DDVCAKIND 332 (453)
T ss_dssp EEGGGGTTSSCEEEEECHHHHTT-SSSCC----------------CCCCHHHHHHHHHHHHHHH-H-----TTHHHHHHH
T ss_pred EChhhhCCcceEEEechHHHHHH-hccccC----CC---ceeCCCCCCCHHHHHHHHHHHHHHh-h-----hhHHHHHHH
Confidence 56987754458999999887765 221000 00 00000112333344444455555 4 2 235677788
Q ss_pred HHHHHHHHHHHHc-CCCcCCCcccccceEEEEcCC-----c---ccc-----CChhhHHHHHHHHhhhcceEeeecccCC
Q 012991 330 QALKMARMLANAW-GTSLGSPPEICAAMVMVGLPS-----R---LRV-----MGEDDALRLRGHLRVRFGVEVPIHYQAP 395 (452)
Q Consensus 330 ~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~-----~---~~~-----~~~~~~~~l~~~L~~~~gI~v~~~~~~~ 395 (452)
+.+++.+.|.++. ...+.......+.++++.++. . ... .+..+..++.+.|.++ ||.++.
T Consensus 333 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gv~v~~----- 406 (453)
T 2cy8_A 333 LGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE-GVDIGG----- 406 (453)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT-TEECBT-----
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC-CeEEeC-----
Confidence 8888888887652 111111111236788888762 0 000 0122456788888764 999831
Q ss_pred CCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 396 KDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
. +.+|++ ..++++|+++++++|+++++.
T Consensus 407 ---------------~--~~~~l~--~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 407 ---------------R--GSVFLS--AQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp ---------------T--TEEECC--TTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------C--CCEEee--ccCCHHHHHHHHHHHHHHHHH
Confidence 1 236765 456999999999999988753
No 225
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.87 E-value=5.4e-21 Score=192.53 Aligned_cols=341 Identities=15% Similarity=0.107 Sum_probs=207.7
Q ss_pred CCCCcHHHHHHHHHHHHHH-hcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccc---
Q 012991 48 FGSCPKSVLADQQKWQLKF-LQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFT--- 123 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~--- 123 (452)
.|..++.+.+++.+.+... ..+..........++.+++.+.++++++.+ .+.++|++||++|+..++..+...+.
T Consensus 77 lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~-~~~v~f~~sGseA~~~Aik~a~~~~~~~~ 155 (472)
T 1ohv_A 77 IGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENAFKTIFMWYRSKE 155 (472)
T ss_dssp SCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTT-CCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCC-cCEEEEeCCchhHHHHHHHHHHHHhhhhc
Confidence 4566788999998865322 112211111112345555666666666543 57999999999999999986531100
Q ss_pred cC--------------CCCCC---CEEEEeCCcchhHHHHHHHHHH-----hcCcEE---EEEeCCC---CCC-C--hH-
Q 012991 124 EG--------------RFHRN---DTVLMLHCAFQAVKKSIQAYVT-----RAGGSV---VEVQLPF---PLA-S--EE- 171 (452)
Q Consensus 124 ~~--------------~~~~g---~~Vl~~~~~~~s~~~~~~~~a~-----~~g~~v---~~~~~~~---~~~-~--~~- 171 (452)
+. .-.+| ++|++.++.|++.......+.. ..+... ..++++. +.. . ..
T Consensus 156 ~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 235 (472)
T 1ohv_A 156 RGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQ 235 (472)
T ss_dssp HTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHH
T ss_pred cCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccch
Confidence 00 00134 8999999998886554432211 112211 1222210 100 0 11
Q ss_pred ---H-HHHHHHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc-cCCcc--cccc
Q 012991 172 ---E-IINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA-MGSIK--IDVK 240 (452)
Q Consensus 172 ---~-~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~-~g~~~--~~~~ 240 (452)
. .+++|++++++......++++|+++..+|++|.+.| +++|.++|++||+ ++|+|++|+ +|... +...
T Consensus 236 ~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~-lli~DEv~~g~g~~g~~~~~~ 314 (472)
T 1ohv_A 236 QEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGC-AFLVDEVQTGGGSTGKFWAHE 314 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTC-EEEEECTTTTTTTTSSSSGGG
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCC-EEEEeCcccCCCCCCCchhcc
Confidence 2 278888888642111127899999988999999877 9999999999999 899999997 44432 2333
Q ss_pred ccC----ccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHh
Q 012991 241 EIG----ADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRF 316 (452)
Q Consensus 241 ~~~----~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 316 (452)
..+ +|++++| |++ ..| |+++ ++++... .+.. .+ .+.+.+...+.+..++++.+.+
T Consensus 315 ~~gv~~~~Di~t~s--K~~--l~G-G~~~-~~~~~~~---~~~~---~~--------~T~~~~~~~~aaa~aal~~~~~- 373 (472)
T 1ohv_A 315 HWGLDDPADVMTFS--KKM--MTG-GFFH-KEEFRPN---APYR---IF--------NTWLGDPSKNLLLAEVINIIKR- 373 (472)
T ss_dssp GGCCSSCCSEEEEC--GGG--SSE-EEEE-CGGGSCS---SSSS---SC--------CSSSSCHHHHHHHHHHHHHHHH-
T ss_pred ccCCCCCCCEEEEc--ccc--ccC-CccC-chhhccc---cccc---cc--------CccCccHHHHHHHHHHHHHHHh-
Confidence 333 7887655 973 123 6655 5444211 1110 00 0112233444555566666654
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHc-CCC-cCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 317 EGGIDGIMQRNHEQALKMARMLANAW-GTS-LGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 317 ~~g~~~~~~~~~~~~~~l~~~L~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
+.+.++++++++++++.|.++. ++. .+......+.++++.++ +..+...+.+.|.++ ||.+...
T Consensus 374 ----~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~------~~~~~~~~~~~l~~~-Gv~~~~~--- 439 (472)
T 1ohv_A 374 ----EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP------DESIRNKLISIARNK-GVMLGGC--- 439 (472)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS------SHHHHHHHHHHHHHT-TEECEEE---
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeC------ChhHHHHHHHHHHHC-CeEEecC---
Confidence 2357788899999999998762 222 11111223667777765 233566788888774 9998532
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++||++++..+|++||++++++|++++++
T Consensus 440 -----------------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 440 -----------------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp -----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1369999999999999999999999998764
No 226
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.87 E-value=4.4e-20 Score=183.90 Aligned_cols=327 Identities=13% Similarity=0.105 Sum_probs=202.6
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
|..++.+.+++.+.+.... . +. .+.+...++.++++++++ . .++++|++|||+|++.++..+. . ..
T Consensus 68 G~~~p~v~~A~~~~~~~~~----~-~~-~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGsea~~~al~~a~-~-----~~ 133 (429)
T 4e77_A 68 GHNHPAIRQAVIEAVERGL----S-FG-APTEMEVKMAQLVTDLVP-T-MDMVRMVNSGTEATMSAIRLAR-G-----YT 133 (429)
T ss_dssp CBTCHHHHHHHHHHHTTCS----C-CS-SCCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHH-H-----HH
T ss_pred CCCCHHHHHHHHHHHHhCc----c-cC-CCCHHHHHHHHHHHhhCC-C-CCEEEEeCcHHHHHHHHHHHHH-H-----hh
Confidence 4567889999988775421 1 11 134667889999999987 3 5899999999999999998542 1 24
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCc-----------------EEEEEeCCCCCCChHHHHHHHHHHHhccccCCCce
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGG-----------------SVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMI 191 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~-----------------~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 191 (452)
++++|++.++.|++........ ...+. .+..+ +.++ +++|++.+++. .+++
T Consensus 134 ~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d----~~~le~~l~~~---~~~~ 201 (429)
T 4e77_A 134 GRDKIIKFEGCYHGHADCLLVK-AGSGALTLGQPNSPGVPTDFAKHTLTC----TYND----LASVRQAFEQY---PQEV 201 (429)
T ss_dssp CCCEEEEETTCCCC-------------------CCCTTSCGGGGTTEEEE----CTTC----HHHHHHHHHHS---TTTE
T ss_pred CCCEEEEEcCccCCCChhhhhh-cCCcccccCCCCcCCCCCccCCceeec----CCCC----HHHHHHHHHhc---CCCE
Confidence 5678999888888765422110 00010 11222 1112 68888888642 3578
Q ss_pred EEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccc---cCCc-cccccccCccEEEEcCcccCcCCCCcEE
Q 012991 192 RLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHA---MGSI-KIDVKEIGADFYVSNLHKWFFCPPSVAF 263 (452)
Q Consensus 192 ~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~---~g~~-~~~~~~~~~d~~~~s~~K~l~g~~G~G~ 263 (452)
++|+++..++++|.+.+ +++|.++|++||+ ++|+|++|+ .|.. ..+.....+|++++ +|++.++..+|+
T Consensus 202 ~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~-lli~DEv~~g~r~g~~~~~~~~~~~pdi~t~--sK~~~~G~~~G~ 278 (429)
T 4e77_A 202 ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGA-LLIIDEVMTGFRVALAGAQDYYHVIPDLTCL--GKIIGGGMPVGA 278 (429)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC-EEEEEETTTBTTTBTTCHHHHTTCCCSEEEE--EGGGGTTSCCEE
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEeccccCcccCcchHHHhcCCCCCeeee--cccccCCCCeEE
Confidence 88888877777888888 9999999999999 899999998 2221 11222334687654 598765555899
Q ss_pred EEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-
Q 012991 264 LYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW- 342 (452)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~- 342 (452)
+++++++++. +.... . .....+.+.+...+.+..++++.+.+ +.+.++.+++.+++++.|.++.
T Consensus 279 ~~~~~~~~~~-l~~~~-~--------~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~ 343 (429)
T 4e77_A 279 FGGRREVMNA-LAPTG-P--------VYQAGTLSGNPIAMAAGFACLTEISQ-----VGVYETLTELTDSLATGLRHAAK 343 (429)
T ss_dssp EEECHHHHTT-BTTTS-S--------BCC--CCCCCHHHHHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHH-hccCC-C--------ccccCCCCCCHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888775 22110 0 00000112333344444445554431 4556777788888888876642
Q ss_pred CCCcCCCcccccceEEEEcCCccc--------cCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccc
Q 012991 343 GTSLGSPPEICAAMVMVGLPSRLR--------VMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITG 414 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
...+.......+.++++.+++... ..+.....++.+.|.++ ||.+..+. ..
T Consensus 344 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~--------------------~~ 402 (429)
T 4e77_A 344 EENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSA--------------------FE 402 (429)
T ss_dssp HTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSST--------------------TS
T ss_pred hCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecC--------------------CC
Confidence 112222222347788888763200 00112346788888775 99986321 13
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
.+|++ ..+|++|+++++++|++++++
T Consensus 403 ~~~~~--~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 403 AGFMS--LAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp CEECC--TTCCHHHHHHHHHHHHHHHTT
T ss_pred CEEEe--ccCCHHHHHHHHHHHHHHHHh
Confidence 46665 446999999999999998753
No 227
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.86 E-value=3.9e-20 Score=178.63 Aligned_cols=317 Identities=16% Similarity=0.133 Sum_probs=209.4
Q ss_pred HHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCC-CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeC
Q 012991 85 SRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHR-NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQL 163 (452)
Q Consensus 85 ~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~-g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~ 163 (452)
+..+++.+ |.+.....++++|+|.++.+++.+.++.- ++ +++||+++.+|.|+.+++.. .|++++++++
T Consensus 122 ~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~-----rpg~d~VIvpRn~HKSv~kAliL----~Gl~Pv~V~p 191 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHK-----RPKAKYIIWPRIDQKSCFKSMIT----AGFEPVVIEN 191 (501)
T ss_dssp HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHH-----CTTCCEEEEECCCCHHHHHHHHH----TTCEEEEECE
T ss_pred HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcc-----cCCCCEEEEecchHHHHHHHHHH----cCCeEEEEee
Confidence 44455554 99855568999999977776666654311 23 49999999999999998865 5999999965
Q ss_pred CCCCCChHHH-HHHHHHHHhccccCCCceEEEEEecc-CCCCcccccHHHHHHHHHHcCCCEEEEecccccCCcc-----
Q 012991 164 PFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHI-TSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSIK----- 236 (452)
Q Consensus 164 ~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~-~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~~----- 236 (452)
... ++...+ +++++++|+++ +.+..++++..+ ++-.+...|+++|+++|++||+ +++||+||+.-...
T Consensus 192 ~~d-~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gI-pllVDeAhGah~~~~~~lp 266 (501)
T 3hl2_A 192 VLE-GDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDI-PHIVNNAYGVQSSKCMHLI 266 (501)
T ss_dssp EEE-TTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTC-CEEEECTTCTTCHHHHHHH
T ss_pred eec-ccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCC-eEEEeCcchhhhhhhhhhH
Confidence 211 122334 89999999864 323334444444 3334566899999999999999 69999998763321
Q ss_pred ccccccC-ccEEEEcCcccCcCCCCcEEEEEec-CccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHH
Q 012991 237 IDVKEIG-ADFYVSNLHKWFFCPPSVAFLYCRK-SILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVS 314 (452)
Q Consensus 237 ~~~~~~~-~d~~~~s~~K~l~g~~G~G~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 314 (452)
...-..+ +|+++.|.||++..|.|.++++.++ +++++ + ...++|+.+..+.+.+..++..+.
T Consensus 267 ~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~-~---------------~~~yPGr~S~Spsldl~~tLL~lG 330 (501)
T 3hl2_A 267 QQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE-I---------------SKMYPGRASASPSLDVLITLLSLG 330 (501)
T ss_dssp HHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHH-H---------------HHTSCSCBCSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHH-H---------------HHhCCCCCCCcHHHHHHHHHHHHH
Confidence 1222346 9999999999999998866666654 34443 1 111235555666666666776666
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeec
Q 012991 315 RFEGGIDGIMQRNHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIH 391 (452)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~ 391 (452)
.- |++++.++..+++++|.+.|.++.. -++...+.+ ..-+.+.+.. +....+.+..++-..|..+ +|--+..
T Consensus 331 r~--Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n-~is~a~tl~~-~~~~~~~~~t~~gs~Lf~r-~vsG~Rv 405 (501)
T 3hl2_A 331 SN--GYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHN-PISLAMTLKT-LDEHRDKAVTQLGSMLFTR-QVSGARV 405 (501)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTC-SSEEEEECTT-SCTTTSCHHHHHHHHHHHT-TCCSCEE
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCC-ceeEEEeccc-ccccccccHHHHHHHHHhc-CCCccee
Confidence 54 8999999999999999999988643 345444432 3345566531 1111123456777777654 5542211
Q ss_pred -----------ccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhccc
Q 012991 392 -----------YQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEGQ 444 (452)
Q Consensus 392 -----------~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~~ 444 (452)
+.+.+-|.+.. ...-.++-++.....+.+||+.+++.|.+++....
T Consensus 406 v~~~~~~~i~g~~f~~~g~h~~-------~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~ 462 (501)
T 3hl2_A 406 VPLGSMQTVSGYTFRGFMSHTN-------NYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVR 462 (501)
T ss_dssp ECTTCCEEETTEEESSTTTTSS-------CCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCceEECCeeecCcccCCC-------CCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 11111121111 23356899998888999999999999999997654
No 228
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.86 E-value=2.9e-20 Score=184.94 Aligned_cols=335 Identities=15% Similarity=0.113 Sum_probs=209.1
Q ss_pred CCCCeEEeccC----CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHH
Q 012991 36 HQHGVARINNG----SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAA 111 (452)
Q Consensus 36 ~~~~~~~l~~~----~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~ 111 (452)
.+..++.|..+ ..++.++.+.+++.+.+... . . +. ...+...+++++++++++ + .+++++++||++|+
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~-~--~~-~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~ea~ 121 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG--L-T--FG-APSPLEVALAKKVKRAYP-F-VDLVRFVNSGTEAT 121 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--S-C--CS-SCCHHHHHHHHHHHHHCT-T-CCEEEEESSHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhC--C-C--CC-CCCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHH
Confidence 34455555443 23566788999999887541 1 1 11 135567889999999986 3 58999999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHH----------hcCc------EEEEEeCCCCCCChHHHHH
Q 012991 112 AIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVT----------RAGG------SVVEVQLPFPLASEEEIIN 175 (452)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~----------~~g~------~v~~~~~~~~~~~~~~~~~ 175 (452)
..++... +. +.++++|++.++.|++........+. ..|+ .+..+ +..+ ++
T Consensus 122 ~~al~~a-r~-----~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~----~~~d----~~ 187 (424)
T 2e7u_A 122 MSALRLA-RG-----YTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVL----EYND----PE 187 (424)
T ss_dssp HHHHHHH-HH-----HHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEE----CTTC----HH
T ss_pred HHHHHHH-HH-----hhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeC----CCCC----HH
Confidence 9998852 11 23458899999988864322110000 0121 23444 2222 67
Q ss_pred HHHHHHhccccCCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEecccccCCc-c----ccccccCccE
Q 012991 176 EFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAMGSI-K----IDVKEIGADF 246 (452)
Q Consensus 176 ~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~-~----~~~~~~~~d~ 246 (452)
+|++.+++. .+++++|+++..++++|.+.| +++|.++ ++||+ ++|+|++|+ |.. . .+.....+|+
T Consensus 188 ~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~-~lI~DEv~~-g~~~g~~~~~~~~~~~~di 261 (424)
T 2e7u_A 188 GLREVLKRR---GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV-LLIADEVMT-GFRLAFGGATELLGLKPDL 261 (424)
T ss_dssp HHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC-EEEEECTTT-TTTSSTTHHHHHHTCCCSE
T ss_pred HHHHHHHhC---CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC-EEEEecCcc-ccccchhHHHHHhCCCcch
Confidence 888888532 246788888776667999887 9999999 99999 899999998 221 0 1111234687
Q ss_pred EEEcCcccCcCCCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHH
Q 012991 247 YVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQR 326 (452)
Q Consensus 247 ~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~ 326 (452)
+ |++|+++++..+|++++++++++. +. +.... + .. .+.+.+...+.+..++++.+.+ .+.+.++
T Consensus 262 ~--s~sK~l~~G~~~G~~~~~~~~~~~-~~-~~~~~-~-----~~--~t~~~~~~~~aaa~aal~~~~~----~~~~~~~ 325 (424)
T 2e7u_A 262 V--TLGKILGGGLPAAAYAGRREIMEK-VA-PLGPV-Y-----QA--GTLSGNPLAMAAGLATLELLEE----NPGYYAY 325 (424)
T ss_dssp E--EECGGGGTTSSCEEEEECHHHHTT-BT-TTSSB-C-----CC--CTTCSCHHHHHHHHHHHHHHHH----CTHHHHH
T ss_pred h--hhhhhhhCCcceEEEEEcHHHHhh-hc-ccCCc-c-----cC--CCCCCCHHHHHHHHHHHHHHHh----ccHHHHH
Confidence 6 556987654448999999887765 22 11000 0 00 0112233344444556665543 1567888
Q ss_pred HHHHHHHHHHHHHHHc---CCCcCCCcccccceEEEEcCCcc-c------cCChhhHHHHHHHHhhhcceEeeecccCCC
Q 012991 327 NHEQALKMARMLANAW---GTSLGSPPEICAAMVMVGLPSRL-R------VMGEDDALRLRGHLRVRFGVEVPIHYQAPK 396 (452)
Q Consensus 327 ~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~ 396 (452)
++++.+++.+.|.++. ++.. .....+.++++.++... . ..+..+..++.+.|.+ .||.+..+.
T Consensus 326 ~~~~~~~l~~~L~~~~~~~~~~~--~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~---- 398 (424)
T 2e7u_A 326 LEDLGARLEAGLKEVLKEKGLPH--TVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSN---- 398 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC--EEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSS----
T ss_pred HHHHHHHHHHHHHHHHHhCCCce--EEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccC----
Confidence 8999999999988752 3321 11123678888876210 0 0012345678888876 599986321
Q ss_pred CCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHH
Q 012991 397 DDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILL 439 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~ 439 (452)
...+|++ ..+|++|+++++++|+++
T Consensus 399 ----------------~~~~~~~--~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 399 ----------------FEAAFLS--VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp ----------------SSCEECC--TTCCHHHHHHHHHHHHHH
T ss_pred ----------------CCceEee--ccCCHHHHHHHHHHHHHh
Confidence 1346666 446999999999999876
No 229
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.85 E-value=5.9e-21 Score=189.34 Aligned_cols=259 Identities=12% Similarity=0.125 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHhHhCCCCCCcEE--EecChhHHHHHHHHHhhcccccCCCCCCCEEEEeC-CcchhHHHHHH------HH
Q 012991 80 KGILESRAAVKDLINADDVGEIS--LVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLH-CAFQAVKKSIQ------AY 150 (452)
Q Consensus 80 ~~~~~~~~~la~~~~~~~~~~i~--~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~-~~~~s~~~~~~------~~ 150 (452)
...+++++.+++++|.+ ...+ +++|||+|+..++.++ +++||+|++++ +.|.+....+. ..
T Consensus 65 ~~~~~l~~~la~~~g~~--~~~~~i~~~sGt~Ai~~al~al--------~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~ 134 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAE--AGLVRPQIISGTHAISTALFGI--------LRPGDELLYITGKPYDTLEEIVGVRGKGVGS 134 (431)
T ss_dssp HHHHHHHHHHHHHTTCS--EECCBTTSCSHHHHHHHHHHTT--------CCTTCEEEECSSSCCTTHHHHTTSSSCSSSC
T ss_pred hhHHHHHHHHHHHhCCC--cccccceeeCHHHHHHHHHHHh--------CCCCCEEEEeCCCCchhHHHHHhhcccccch
Confidence 45788999999999986 2222 1347899999999876 58999999998 89988655442 11
Q ss_pred HHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEec----cCCCCcccccHHHHHHHHHH--cCCCE
Q 012991 151 VTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH----ITSMPCVVIPVRKLVKICRD--EGVDQ 223 (452)
Q Consensus 151 a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~----~~n~tG~~~~l~~i~~l~~~--~~~~~ 223 (452)
++..|++++.++. +.++.+ ++++++++ .+++++|++++ +++++|...++++|+++|++ +|+ +
T Consensus 135 ~~~~G~~~~~v~~----~~~~~~d~e~l~~~l------~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~-~ 203 (431)
T 3ht4_A 135 FKEYNIGYNAVPL----TEGGLVDFEAVAAAI------HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDV-V 203 (431)
T ss_dssp SGGGTCEEEECCB----CTTSSBCHHHHHHHC------CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTC-E
T ss_pred HHHcCCEEEEeCC----CCCCCcCHHHHHhhc------CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCC-E
Confidence 2446899999854 333444 89999999 57899999996 44555556678899999999 999 8
Q ss_pred EEEecccccCCccccccccCccEEEEcCcccCcC---CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCc
Q 012991 224 VFVDAAHAMGSIKIDVKEIGADFYVSNLHKWFFC---PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDY 300 (452)
Q Consensus 224 ~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~g---~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (452)
+++|++++.+........+++|+++.|++|+++| +.| |+++.++++++. +.........+.. ..++.
T Consensus 204 livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~-l~~~~~~~~~g~~--------~~~~~ 273 (431)
T 3ht4_A 204 VFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEA-CAYRLTSPGIGAE--------AGASL 273 (431)
T ss_dssp EEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHH-HHHHHSCTTTTTS--------CSCCC
T ss_pred EEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHH-HHHHhccCCcccc--------cCccH
Confidence 9999999987754444456789999999998766 677 999999887765 2110000001100 01111
Q ss_pred cccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-c-cccceEEEEcCCccccCChhhHHHHHH
Q 012991 301 SAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWGTSLGSPP-E-ICAAMVMVGLPSRLRVMGEDDALRLRG 378 (452)
Q Consensus 301 ~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (452)
. ....+++.+.. .....++..+++.++.+.|.++ ++++...+ . ....++.+.++ +.....++++
T Consensus 274 ~---~~~~~~~~l~~----~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l~------~~~~~~~~~~ 339 (431)
T 3ht4_A 274 Y---SLQEMYQGFFL----APHVAGQALKGAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQFD------DKDRMIAFCQ 339 (431)
T ss_dssp S---CSHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEECC------CHHHHHHHHH
T ss_pred H---HHHHHHhHhhh----HHHHHHHHHHHHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEeC------CHHHHHHHHH
Confidence 1 11223333332 3445677788899999999987 66653221 1 12336677775 3456778888
Q ss_pred HHhhh
Q 012991 379 HLRVR 383 (452)
Q Consensus 379 ~L~~~ 383 (452)
.|.+.
T Consensus 340 ~l~~~ 344 (431)
T 3ht4_A 340 AIQYA 344 (431)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88653
No 230
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.85 E-value=3.2e-20 Score=182.89 Aligned_cols=351 Identities=11% Similarity=-0.029 Sum_probs=211.6
Q ss_pred HHHhhhccCCCCeEEeccCC------CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHh-CCCC-CC
Q 012991 28 EIRDEFSHHQHGVARINNGS------FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLI-NADD-VG 99 (452)
Q Consensus 28 ~ir~~~~~~~~~~~~l~~~~------~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~-~~ 99 (452)
.+.+.|.....+.|+|..|. -.+.++.|.++........ .. ..|.+..+..++++++++++ |-.. .+
T Consensus 34 ~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~----~~-~~Y~p~~G~p~lr~aia~~~~g~~~~~~ 108 (420)
T 4h51_A 34 DLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMN----LD-YEYLPISGYQPFIDEAVKIIYGNTVELE 108 (420)
T ss_dssp HHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTT----CC-CCCCCTTCCHHHHHHHHHHHHC---CGG
T ss_pred HHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCC----CC-CCCCCcCChHHHHHHHHHHhcCCCcccc
Confidence 34445554445678887773 2255577888877665321 11 12445567788888888875 3211 12
Q ss_pred --cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcE-EEEEeCCCCCCChHHH-HH
Q 012991 100 --EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGS-VVEVQLPFPLASEEEI-IN 175 (452)
Q Consensus 100 --~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~-~~ 175 (452)
..+.|.|||.|+..++..+.+. ...+||+|++++|.|+++...+.. .|.+ +...+.. . .+...+ .+
T Consensus 109 ~~~~~qt~ggtga~~~a~~~l~~~----~~~pgd~V~ip~P~w~~y~~i~~~----aG~~~V~~~~~~-~-~~~~~~d~~ 178 (420)
T 4h51_A 109 NLVAVQTLSGTGAVSLGAKLLTRV----FDAETTPIYLSDPTWPNHYGVVKA----AGWKNICTYAYY-D-PKTVSLNFE 178 (420)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHTTT----SCTTTSCEEEEESCCTHHHHHHHH----TTCCCEEEEECE-E-GGGTEECHH
T ss_pred ccceeeecCchHHHHHHHHHHHHh----cCCCCCEEEEecCCchhHHHHHHH----cCCeEEEeeccc-c-ccccCCCHH
Confidence 3356899999998888877543 257999999999999987665543 5765 4444321 1 111112 55
Q ss_pred HHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCCCEEEEecccccCCc---ccc-------cccc
Q 012991 176 EFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGVDQVFVDAAHAMGSI---KID-------VKEI 242 (452)
Q Consensus 176 ~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~~~~ivD~a~~~g~~---~~~-------~~~~ 242 (452)
.+.+.++.. ++++.+++++.++||||..++ +++|+++|+++++ +++.|+++..... ..+ ....
T Consensus 179 ~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~-~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~ 254 (420)
T 4h51_A 179 GMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHH-QVFFDSAYQGYASGSLDTDAYAARLFARRG 254 (420)
T ss_dssp HHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred HHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCc-eEeeehhhhhhccCCcccchHHHHhHHhhC
Confidence 566655543 578889999999999999987 5578999999999 7999998753221 111 1111
Q ss_pred CccEEEEcCcccCcCCCC--cEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHH---HHHHhh
Q 012991 243 GADFYVSNLHKWFFCPPS--VAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVT---FVSRFE 317 (452)
Q Consensus 243 ~~d~~~~s~~K~l~g~~G--~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~ 317 (452)
..-+++.|++|. ++.+| +|++.+..+..+. ......... ...+.....++...+......+. +...+.
T Consensus 255 ~~~i~~~s~SK~-~~~~G~RvG~~~~~~~~~~~--~~~~~~~l~----~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~ 327 (420)
T 4h51_A 255 IEVLLAQSFSKN-MGLYSERAGTLSLLLKDKTK--RADVKSVMD----SLIREEYTCPPAHGARLAHLILSNNELRKEWE 327 (420)
T ss_dssp CCCEEEEECTTT-SCCGGGCEEEEEEECSCHHH--HHHHHHHHH----HHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHH
T ss_pred ceEEEEeccccc-cccccCceEEEEecccCHHH--HHHHHHHHH----HhhhcccCcchHHHHHHHHHHhcCHHHHHHHH
Confidence 234677899996 78777 8998887665543 000000000 00000112233323322222222 111111
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHcC---CCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccC
Q 012991 318 GGIDGIMQRNHEQALKMARMLANAWG---TSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQA 394 (452)
Q Consensus 318 ~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~ 394 (452)
..++.++++++++++.+.+.|.+... |....++. +.|.+. +.+.++ ++.|. ++||++..
T Consensus 328 ~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~--GmF~~~----------gls~e~-v~~L~-e~~Vy~~~---- 389 (420)
T 4h51_A 328 AELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQI--GMFSFL----------GLSKAQ-CEYCQ-NHNIFITV---- 389 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCC--SSEEEC----------CCCHHH-HHHHH-HTTEECCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCC--ceEEec----------CcCHHH-HHHHH-hCCEEEcC----
Confidence 24678888999999999999988621 22112222 444442 334443 46775 46998731
Q ss_pred CCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 395 PKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
.+ |||++.. +.+.|++++++|.+++++-
T Consensus 390 ------------------~g--Ris~Agl-~~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 390 ------------------SG--RANMAGL-THETALMLAQTINDAVRNV 417 (420)
T ss_dssp ------------------TC--EEEGGGC-CHHHHHHHHHHHHHHHC--
T ss_pred ------------------CC--EEEeccC-CHHHHHHHHHHHHHHHHHh
Confidence 12 9999753 7889999999999998763
No 231
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.85 E-value=3.4e-20 Score=178.23 Aligned_cols=352 Identities=16% Similarity=0.130 Sum_probs=221.3
Q ss_pred CeEEeccCCCCCCcHHHHHHHHHHHHHHhc--CCch-hhh--hhhhHHHHHHHHHHHhHhCCCCCCcE---EEecChhHH
Q 012991 39 GVARINNGSFGSCPKSVLADQQKWQLKFLQ--QPDD-FYF--NSLRKGILESRAAVKDLINADDVGEI---SLVDNATTA 110 (452)
Q Consensus 39 ~~~~l~~~~~~~~p~~v~e~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~~~~~la~~~~~~~~~~i---~~t~g~t~a 110 (452)
..+.|= ++-...++.|++++...+..-+. +|.. +|+ ...++...-+.++.+++||++ .... +-.-||+.|
T Consensus 55 ~~ieLI-ASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~-~A~w~VNVQP~SGs~A 132 (490)
T 3ou5_A 55 RGLELI-ASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD-PAQWGVNVQPYSGSPA 132 (490)
T ss_dssp HSEECC-TTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCC-TTTEEEECCCSSHHHH
T ss_pred cCceEe-cCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCC-ccccCCCCCcCCHHHH
Confidence 344443 45667888899998877654322 2332 222 234556677888999999996 4432 456789999
Q ss_pred HHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHH----HHHhcCcEEEEEeCCCCCCC-hHHH-HHHHHHHHhcc
Q 012991 111 AAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQA----YVTRAGGSVVEVQLPFPLAS-EEEI-INEFKKGIEKG 184 (452)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~----~a~~~g~~v~~~~~~~~~~~-~~~~-~~~l~~~i~~~ 184 (452)
+..++.++ ++|||+|+..+..|.++...-.. -....|.-+..++. +++. .+.+ ++++++..++
T Consensus 133 N~avy~Al--------l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y--~vd~~t~~IDyd~~~~~A~~- 201 (490)
T 3ou5_A 133 NLAVYTAL--------LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY--KLNPKTGLIDYNQLALTARL- 201 (490)
T ss_dssp HHHHHHHH--------CC-CCCEECBC----------------------------CB--CEETTTTEECHHHHHHHHHH-
T ss_pred HHHHHHHH--------cCCCCEEEecccCCCCcccccccCCCccccccccccccccc--ccCCCCCcccHHHHHHHHhh-
Confidence 99999988 69999999877665554221100 00112333333332 3342 3445 8999998874
Q ss_pred ccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCCc-----cccccccCccEEEEcCcccCcCCC
Q 012991 185 KKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGSI-----KIDVKEIGADFYVSNLHKWFFCPP 259 (452)
Q Consensus 185 ~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~~-----~~~~~~~~~d~~~~s~~K~l~g~~ 259 (452)
.+|++|++-.-. .-..+|++++.+||++.|+ ++++|.+|-.|.+ +-.+. .+|++++|.||+|.||+
T Consensus 202 ----~kPklIi~G~Sa--Y~r~id~~~~reIAd~vGA-~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPr 272 (490)
T 3ou5_A 202 ----FRPRLIIAGTSA--YARLIDYARMREVCDEVKA-HLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGAR 272 (490)
T ss_dssp ----HCCSEEEECCSS--CCSCCCHHHHHHHHHHHTC-EEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCS
T ss_pred ----cCCCeEEECCcc--CccccCHHHHHHHHhhccc-EEEechhhhhhhhcccccCCccc--cceEEeccccccccCCC
Confidence 689999995544 4568899999999999999 8999999976543 32332 38999999999999999
Q ss_pred CcEEEEEecCcccc----------CCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHH
Q 012991 260 SVAFLYCRKSILSS----------DMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHE 329 (452)
Q Consensus 260 G~G~l~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~ 329 (452)
| |+++++++.... ++...+-..-|++ ..|.|....+++...++.....- .++.+.+++.+
T Consensus 273 G-G~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg-------~qggp~~h~IAAkAVaf~Ea~~p--~fk~Ya~qVv~ 342 (490)
T 3ou5_A 273 S-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPS-------LQGGPHNHAIAAVAVALKQACTP--MFREYSLQVLK 342 (490)
T ss_dssp C-EEEEEECSEEEECC--CCEEECCCHHHHHHHHTTT-------TCSSCCHHHHHHHHHHHHHHHSH--HHHHHHHHHHH
T ss_pred c-eEEEeccccccccccccchhHHHHHHHHHhhcCcc-------ccccchHHHHHHHHHHHHHHHhH--hHHHHHHHHHH
Confidence 8 999998764321 0000000000111 11445555556655555543322 57888999999
Q ss_pred HHHHHHHHHHHHcCCCcCCCcccccceEEEEcCCccccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCC
Q 012991 330 QALKMARMLANAWGTSLGSPPEICAAMVMVGLPSRLRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKD 409 (452)
Q Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 409 (452)
+++.|.+.|.+. |+.++... ...+.+++.+.. .+.+.++..+.|.+ .||.+..-..+....
T Consensus 343 NAkaLA~~L~~~-G~~vvsGg-TdnHlvLvDl~~-----~g~tG~~ae~~Le~-agItvNkN~iP~D~s----------- 403 (490)
T 3ou5_A 343 NARAMADALLER-GYSLVSGG-TDNHLVLVDLRP-----KGLDGARAERVLEL-VSITANKNTCPGDRS----------- 403 (490)
T ss_dssp HHHHHHHHHHHT-TCEEGGGS-CSSSEEEEECGG-----GTCCHHHHHHHHHH-TTEECEEECCTTCCC-----------
T ss_pred HHHHHHHHHHhC-CCeeecCC-CCceEEEEeccc-----cCCCHHHHHHHHHH-cCcEECCCCCCCCCC-----------
Confidence 999999999987 88876532 336788887642 24567777777754 699985433332111
Q ss_pred CCccceEEecccccC----CHHHHHHHHHHHHHHHh
Q 012991 410 GIITGYARISHQVYN----TLEDYEKFRDAVILLVE 441 (452)
Q Consensus 410 ~~~~~~iRis~~~~~----t~~di~~l~~~l~~~~~ 441 (452)
...++.|||+....+ +++|++++.+.|.+++.
T Consensus 404 p~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 404 AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 244678999986554 47899999999988775
No 232
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.81 E-value=1e-18 Score=173.02 Aligned_cols=327 Identities=10% Similarity=0.076 Sum_probs=204.4
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.|.+++.+.+.... .... ......++.+.|++.+.. .+.+.|++|||+|++.++.. +|.+
T Consensus 101 lGH~hp~v~~Av~~q~~~~~----~~~~--~~~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~Aikl-Ar~~----- 166 (454)
T 4ao9_A 101 YGHSAPEIRDAVIEAMQGGI----NLTG--HNLLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTA-ALHF----- 166 (454)
T ss_dssp TCSCCHHHHHHHHHHHHTCS----CCCS--EESSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHH-HHHH-----
T ss_pred ccCCCHHHHHHHHHHHhcCC----CccC--CcHHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHH-HHhc-----
Confidence 45677789999988775421 1111 123345678888988864 47999999999999999984 4443
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhc--CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRA--GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
..+++|+....+|++............ ...+..+ |.++ .+.+++.+++. .+++++|+++......|.
T Consensus 167 tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~----p~nd----~~~l~~~l~~~---~~~iAavIvEPv~g~~G~ 235 (454)
T 4ao9_A 167 TGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL----PYND----AQTARAQIERH---GPEIAVVLVEPMQGASGC 235 (454)
T ss_dssp HTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE----CTTC----HHHHHHHHHHT---GGGEEEEEECSEESTTTC
T ss_pred ccCCeEEEEeCCcCCccccccccccCccCCCCcccC----CCch----HHHHHHHHhhc---CCceEEEEeccccCCCCc
Confidence 345789998888887432211000000 1233333 3333 57777777654 467899999999999999
Q ss_pred ccc----HHHHHHHHHHcCCCEEEEecccccCCccc----cccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCC
Q 012991 206 VIP----VRKLVKICRDEGVDQVFVDAAHAMGSIKI----DVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHH 277 (452)
Q Consensus 206 ~~~----l~~i~~l~~~~~~~~~ivD~a~~~g~~~~----~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~ 277 (452)
+.| +++|.++|++||+ ++|+|++++ |-... ......+|+++++ |.++|+..+|.+.+++++.+. + .
T Consensus 236 ~~p~~~fL~~lr~lc~~~g~-lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~ei~~~-~-~ 309 (454)
T 4ao9_A 236 IPGQPDFLQALRESATQVGA-LLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRADVMAL-F-D 309 (454)
T ss_dssp EECCHHHHHHHHHHHHHHTC-EEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHGG-G-C
T ss_pred cCCchhhHHHHHHHHhhcCC-EEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHHHHHHH-H-h
Confidence 987 8899999999999 899999987 42211 1123358998877 877776668999999988875 2 2
Q ss_pred CceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCcCCCcccccce
Q 012991 278 PVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAWG-TSLGSPPEICAAM 356 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~ 356 (452)
+.... ..+.+|-+. .-+++.+++..++.+ ..+.+.+++.++.++|++.|.++.. ..+.......+.+
T Consensus 310 ~~~~~---------~~h~~T~~g-nPla~AAala~L~~l--~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m 377 (454)
T 4ao9_A 310 PRTGP---------LAHSGTFNN-NVMTMAAGYAGLTKL--FTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSL 377 (454)
T ss_dssp TTTCS---------CCCCCTTTT-CHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTE
T ss_pred hccCC---------ccccCCCCC-CHHHHHHHHHHHHHH--hccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceE
Confidence 21000 001122221 223344455555443 2356778888888999888876521 1222222233556
Q ss_pred EEEEcCCc--ccc-----CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHH
Q 012991 357 VMVGLPSR--LRV-----MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDY 429 (452)
Q Consensus 357 ~~~~~~~~--~~~-----~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di 429 (452)
+.+.+-+. ... .+..-...+...|.++ ||++++ .+.+.+++. +|++||
T Consensus 378 ~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p----------------------~~~~~~s~~--~T~~dI 432 (454)
T 4ao9_A 378 MNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSP----------------------RGFVVLSLP--LTDADI 432 (454)
T ss_dssp EEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCT----------------------TCEEECCTT--CCHHHH
T ss_pred EEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcC----------------------CCCEEEeCC--CCHHHH
Confidence 66554211 000 0111224566667665 999741 134555555 599999
Q ss_pred HHHHHHHHHHHhc
Q 012991 430 EKFRDAVILLVEE 442 (452)
Q Consensus 430 ~~l~~~l~~~~~~ 442 (452)
|++++++++++.+
T Consensus 433 d~~l~al~~~l~~ 445 (454)
T 4ao9_A 433 DRYVAAIGSFIGG 445 (454)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 233
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.81 E-value=1.4e-17 Score=165.53 Aligned_cols=342 Identities=15% Similarity=0.155 Sum_probs=214.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCC
Q 012991 47 SFGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGR 126 (452)
Q Consensus 47 ~~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~ 126 (452)
..|...+.+.+++.+.+... .+... .....+...++.++|++++..+..+.++|++|||+|++.++. ++|.+
T Consensus 77 ~lGh~~p~v~~Ai~~q~~~~-~~~~~--~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~Alk-lAr~~---- 148 (456)
T 4atq_A 77 SVGASDPAVVAAVQEAAAHF-THTCF--MVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVK-VARLA---- 148 (456)
T ss_dssp TTCTTCHHHHHHHHHHHHHC-SCCTT--TTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHH-HHHHH----
T ss_pred hcCCCCHHHHHHHHHHHhhc-cCccc--CccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHH-HHhhh----
Confidence 45677788999999887653 11111 122234456778888998875434688999999999999998 45544
Q ss_pred CCCCCEEEEeCCcchhHHHHHHHHHHh-----c-----CcEEEEEeCCCCCC------ChHHH----HHHHHHHHhcccc
Q 012991 127 FHRNDTVLMLHCAFQAVKKSIQAYVTR-----A-----GGSVVEVQLPFPLA------SEEEI----INEFKKGIEKGKK 186 (452)
Q Consensus 127 ~~~g~~Vl~~~~~~~s~~~~~~~~a~~-----~-----g~~v~~~~~~~~~~------~~~~~----~~~l~~~i~~~~~ 186 (452)
..+.+|+....+||+.......+... . ...+..+|.+.+.. .+... .+.+++.+.
T Consensus 149 -t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---- 223 (456)
T 4atq_A 149 -TGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIG---- 223 (456)
T ss_dssp -HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTC----
T ss_pred -hcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhc----
Confidence 44678999999988865443221100 0 12344554432211 11111 233333331
Q ss_pred CCCceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCcc----ccccccCccEEEEcCcccCcC
Q 012991 187 DGKMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSIK----IDVKEIGADFYVSNLHKWFFC 257 (452)
Q Consensus 187 ~~~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~~----~~~~~~~~d~~~~s~~K~l~g 257 (452)
..++.+|+++......|.+.| +++|.++|++||+ ++|+|+++.. |-.. .+.....+|+++++ |.++|
T Consensus 224 -~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gi-llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lgg 299 (456)
T 4atq_A 224 -GDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGI-VFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAG 299 (456)
T ss_dssp -GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTC-EEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGT
T ss_pred -CCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCC-ceEecccccccCCccccccccccCCCCchhhhh--hcccC
Confidence 457899999999888898866 8899999999999 9999999864 3221 22223458999887 77776
Q ss_pred CCCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 012991 258 PPSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARM 337 (452)
Q Consensus 258 ~~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~ 337 (452)
...+|.+++++++.+. + .+.. . ..+|.| +..+..+..++++.+.+ +.+.++.+++.+++.+.
T Consensus 300 g~P~~av~~~~~i~~~-~-~~~~---~------~~Tf~g--npla~aaala~L~~i~~-----~~l~~~~~~~g~~l~~~ 361 (456)
T 4atq_A 300 GLPLSAITGRADLLDA-V-HPGG---L------GGTYGG--NPVACAAALAAIDTMEQ-----HDLNGRARHIEELALGK 361 (456)
T ss_dssp TSSCEEEEEEHHHHTT-S-CTTS---S------CCSSSS--CHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHH
T ss_pred cCCceeeEecHHHHhc-c-cccC---C------CCCCCC--ChHHHHhhHHHHHHHhh-----ccHHHHHHHHHHHHHHH
Confidence 6668999999988775 2 2210 0 111122 22233334445555553 34577778888888888
Q ss_pred HHHHcC-C-----CcCCCcccccceEEEEcCCc-cccCChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCC
Q 012991 338 LANAWG-T-----SLGSPPEICAAMVMVGLPSR-LRVMGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDG 410 (452)
Q Consensus 338 L~~~~~-~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 410 (452)
|.++.. + .++......+.++.+.+.+. ....+..-...+.+.+.++ |+.+....
T Consensus 362 L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~-Gvl~~~~g------------------ 422 (456)
T 4atq_A 362 LRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTCG------------------ 422 (456)
T ss_dssp HHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT-TEECEEEC------------------
T ss_pred HHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHC-CCEEEecC------------------
Confidence 776521 1 12222223466766665321 1111122346788888775 99875321
Q ss_pred CccceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 411 IITGYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 411 ~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
..++.||+.+....|++||++++++|.+.++.
T Consensus 423 ~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 423 TYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 23468999999888999999999999999864
No 234
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.76 E-value=1.9e-16 Score=157.93 Aligned_cols=353 Identities=11% Similarity=0.091 Sum_probs=213.8
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCC
Q 012991 48 FGSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRF 127 (452)
Q Consensus 48 ~~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~ 127 (452)
.|...+.+.+++.+.+...... +..+. ...+...++.++|+++.+.+ .+.+.|++|||+|++.++. ++|+|....-
T Consensus 81 lGh~~p~v~~Ai~~q~~~l~~~-~~~~~-~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGsEA~e~AiK-lAr~~~~~~g 156 (473)
T 4e3q_A 81 AGFDHKGLIDAAKAQYERFPGY-HAFFG-RMSDQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVK-MLWFLHAAEG 156 (473)
T ss_dssp TCSCCHHHHHHHHHHHHHCCCC-CCCTT-EEEHHHHHHHHHHHHHSSCS-SCEEEEESSHHHHHHHHHH-HHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHHhcccc-ccccc-ccCHHHHHHHHHHHhhCCCC-ccEEEEeCchHHHHHHHHH-HHHHHHHhcC
Confidence 3567788999999887764211 11111 12344566888899988764 5799999999999999998 4454432222
Q ss_pred CC-CCEEEEeCCcchhHHHHHHHHHH-----hcC---cEEEEEeCCC------CCCChHHH----HHHHHHHHhccccCC
Q 012991 128 HR-NDTVLMLHCAFQAVKKSIQAYVT-----RAG---GSVVEVQLPF------PLASEEEI----INEFKKGIEKGKKDG 188 (452)
Q Consensus 128 ~~-g~~Vl~~~~~~~s~~~~~~~~a~-----~~g---~~v~~~~~~~------~~~~~~~~----~~~l~~~i~~~~~~~ 188 (452)
++ ..+|+....+|++.......+.. ..+ ..+..++.+. ..+....+ .+++++.+.+. ..
T Consensus 157 ~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~ 234 (473)
T 4e3q_A 157 KPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQRE--GA 234 (473)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH--CG
T ss_pred CCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhh--CC
Confidence 33 45788888888875443322110 001 1223333210 11111111 46667766542 13
Q ss_pred CceEEEEEeccCCCCccccc----HHHHHHHHHHcCCCEEEEeccccc-CCcc----ccccccCccEEEEcCcccCcCC-
Q 012991 189 KMIRLAIIDHITSMPCVVIP----VRKLVKICRDEGVDQVFVDAAHAM-GSIK----IDVKEIGADFYVSNLHKWFFCP- 258 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~~~~----l~~i~~l~~~~~~~~~ivD~a~~~-g~~~----~~~~~~~~d~~~~s~~K~l~g~- 258 (452)
+++++|+++......|.+.| +++|.++|++||+ ++|.|+++.. |-.. .+.....+|+++++ |.+.|+
T Consensus 235 ~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gi-lLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~ 311 (473)
T 4e3q_A 235 DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDI-PVISDEVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGF 311 (473)
T ss_dssp GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-CEEEECTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTS
T ss_pred CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccce-EEeccCccccCCcccchhHHHhcCCCCChHHhc--ccccCCC
Confidence 57899999999988898876 7899999999999 8999999863 3221 12223468999887 877665
Q ss_pred CCcEEEEEecCccccCCCCCceeccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 012991 259 PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARML 338 (452)
Q Consensus 259 ~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L 338 (452)
..+|.+++++++.+. +...... . .......++.| +..+..+..++++.+.+ +.+.++.+++..+|.+.|
T Consensus 312 ~Pl~av~~~~~i~~~-~~~~~~~--~-~~~~hg~T~~G--npla~Aaala~L~~i~~-----~~l~~~~~~~g~~l~~~L 380 (473)
T 4e3q_A 312 FPMGAVILGPELSKR-LETAIEA--I-EEFPHGFTASG--HPVGCAIALKAIDVVMN-----EGLAENVRRLAPRFEERL 380 (473)
T ss_dssp SCCEEEEECHHHHHH-HHHHHHH--H-SCCCCCCTTTT--CHHHHHHHHHHHHHHHH-----SSHHHHHHHHHHHHHHHH
T ss_pred CCcccccccHHHHHH-hcccccc--c-cccccCCCCCC--Ccchhhhhhhhhhhhcc-----ccHHHHHHHHHHHHHHHH
Confidence 458999999888764 1000000 0 00000111112 11222233334455443 456778888999999999
Q ss_pred HHHcCCCcCCCcccccceEEEEcCCccccC-----ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCcc
Q 012991 339 ANAWGTSLGSPPEICAAMVMVGLPSRLRVM-----GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIIT 413 (452)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (452)
.++.....+......+.++.+.+-...... +..-...+.+.+.++ |+.+.. .+
T Consensus 381 ~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~---------------------~g 438 (473)
T 4e3q_A 381 KHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-GLICRP---------------------LG 438 (473)
T ss_dssp HHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEE---------------------ET
T ss_pred HHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHC-CcEEEe---------------------cC
Confidence 887432222222234566666542110100 011245688888775 998852 13
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHHhc
Q 012991 414 GYARISHQVYNTLEDYEKFRDAVILLVEE 442 (452)
Q Consensus 414 ~~iRis~~~~~t~~di~~l~~~l~~~~~~ 442 (452)
+.+|++++...|++|++.+++++++.+++
T Consensus 439 ~~i~l~PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 439 QSVVLCPPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 58999998888999999999999998865
No 235
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.61 E-value=5.9e-20 Score=183.07 Aligned_cols=329 Identities=11% Similarity=0.037 Sum_probs=202.5
Q ss_pred CCCcHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCC
Q 012991 49 GSCPKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFH 128 (452)
Q Consensus 49 ~~~p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~ 128 (452)
|..++.|.+++.+.+.... . + ..+.+...++.++|+++++ . .+.++|++||++|+..++..+ | ...
T Consensus 115 Gh~~p~V~~Av~~q~~~~~---~--~-~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~a-r-----~~t 180 (465)
T 2yky_A 115 GHSHPVIRAAVERALAVGL---N--L-STQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATA-T-----AIT 180 (465)
Confidence 4556779999988765421 1 1 1235567889999999985 2 468999999999999998854 2 124
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCccccc
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP 208 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~ 208 (452)
.+++|++.+..|++.......-....|+....+.. +.+ .++.|++++++. .+++++|+++...+++|.+.|
T Consensus 181 gr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~--~~~----d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~ 251 (465)
T 2yky_A 181 GRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLG--VYN----DVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPA 251 (465)
Confidence 56899999999887544322000112331111111 221 167888888532 267899999887777998877
Q ss_pred ----HHHHHHHHHHcCCCEEEEecccccCCcc----ccccccCccEEEEcCcccCcCCCCcEEEEEecCccccCCCCCce
Q 012991 209 ----VRKLVKICRDEGVDQVFVDAAHAMGSIK----IDVKEIGADFYVSNLHKWFFCPPSVAFLYCRKSILSSDMHHPVV 280 (452)
Q Consensus 209 ----l~~i~~l~~~~~~~~~ivD~a~~~g~~~----~~~~~~~~d~~~~s~~K~l~g~~G~G~l~~~~~~~~~~l~~~~~ 280 (452)
+++|.++|++||+ ++|+|++++ +... .+.....+|++ +++|+++++..+|++++++++++. + .+..
T Consensus 252 ~~~~l~~l~~l~~~~g~-llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~-l-~~~~ 325 (465)
T 2yky_A 252 ERAFLDLLRAEASRCGA-LLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMER-F-DPAR 325 (465)
Confidence 8999999999999 799999998 5221 11112246765 567987664447999999988875 2 2200
Q ss_pred eccCCCCcccccccccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCCcccccceEEE
Q 012991 281 SHEFGNGLPIESAWIGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQALKMARMLANAW-GTSLGSPPEICAAMVMV 359 (452)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~ 359 (452)
.+ . .....+.+.+...+.+..++++.+.+ +.+.+++.++.+++++.|.++. ...+.......+.++++
T Consensus 326 ---~g-~--~~~~~T~~~npla~aAa~aaL~~l~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i 394 (465)
T 2yky_A 326 ---DG-A--FAHAGTFNNNILTMSAGHAALTQIYT-----RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTI 394 (465)
Confidence 00 0 00000112233344444556666653 3467788888888888887652 12222222234677777
Q ss_pred EcCCcc--ccC-----ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHH
Q 012991 360 GLPSRL--RVM-----GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKF 432 (452)
Q Consensus 360 ~~~~~~--~~~-----~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l 432 (452)
.+++.. ... +......+.+.|.++ ||.+.+... +. ++ ..+|++||+++
T Consensus 395 ~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-GV~v~p~~~--------------------~~--~s--~~~t~edid~~ 449 (465)
T 2yky_A 395 HFSRAPIRSAGDVRAADQQLKELFFFHMLRK-GIYLAPRGM--------------------YA--LS--LEIADAGRDAF 449 (465)
Confidence 664200 000 011245688888765 999853221 11 33 44699999999
Q ss_pred HHHHHHHHhc
Q 012991 433 RDAVILLVEE 442 (452)
Q Consensus 433 ~~~l~~~~~~ 442 (452)
+++|+++++.
T Consensus 450 l~~l~~~l~~ 459 (465)
T 2yky_A 450 AEALADFIGE 459 (465)
Confidence 9999998864
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.65 E-value=3.3e-15 Score=158.74 Aligned_cols=354 Identities=12% Similarity=0.080 Sum_probs=200.7
Q ss_pred CCCCC-cHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccC
Q 012991 47 SFGSC-PKSVLADQQKWQLKFLQQPDDFYFNSLRKGILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEG 125 (452)
Q Consensus 47 ~~~~~-p~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~ 125 (452)
..|.. .+.+.+++.+.+..+. +.. +.....+...++.++|+++++.+..+.++|++||++|++.++....++|...
T Consensus 393 ~lGh~~~p~i~~Ai~~Q~~~l~-h~~--~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~ 469 (831)
T 4a0g_A 393 GPDPTFQAELAREMGYTAARFG-HVM--FPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVD 469 (831)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHS-SCC--CTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHhhcc-ccc--ccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhh
Confidence 34555 6679999998887652 211 1111234456788999999874324689999999999999998653544321
Q ss_pred CCC---------CCCEEEEeCCcchhHHHHHHHHHHh----c--------CcEE-------------EEEeCCCC-----
Q 012991 126 RFH---------RNDTVLMLHCAFQAVKKSIQAYVTR----A--------GGSV-------------VEVQLPFP----- 166 (452)
Q Consensus 126 ~~~---------~g~~Vl~~~~~~~s~~~~~~~~a~~----~--------g~~v-------------~~~~~~~~----- 166 (452)
.-. ...+||..+..|++.......+... . +..+ ..++.+..
T Consensus 470 ~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~ 549 (831)
T 4a0g_A 470 HNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIA 549 (831)
T ss_dssp TTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCC
T ss_pred cCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccc
Confidence 111 1347888888888755444322110 0 1111 11222110
Q ss_pred -----CCCh--------------HHHHHHHHHHHhccc--cCCCceEEEEEecc-CCCCccccc----HHHHHHHHHHcC
Q 012991 167 -----LASE--------------EEIINEFKKGIEKGK--KDGKMIRLAIIDHI-TSMPCVVIP----VRKLVKICRDEG 220 (452)
Q Consensus 167 -----~~~~--------------~~~~~~l~~~i~~~~--~~~~~~~lv~~~~~-~n~tG~~~~----l~~i~~l~~~~~ 220 (452)
.++. ....+.|++.+++.. ....++++|+++.. .+..|.+.+ +++|.++|++||
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~g 629 (831)
T 4a0g_A 550 PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRK 629 (831)
T ss_dssp SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTT
T ss_pred cccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcC
Confidence 0010 011467777775311 11457899999986 788888875 889999999999
Q ss_pred CCEEEEecccc-cCCccc----cccccCccEEEEcCcccCcCC-CCcEEEEEecCccccCCCCCceeccCCCCccccccc
Q 012991 221 VDQVFVDAAHA-MGSIKI----DVKEIGADFYVSNLHKWFFCP-PSVAFLYCRKSILSSDMHHPVVSHEFGNGLPIESAW 294 (452)
Q Consensus 221 ~~~~ivD~a~~-~g~~~~----~~~~~~~d~~~~s~~K~l~g~-~G~G~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 294 (452)
+ ++|+|+++. +|-... +.....+|+++++ |.+.|+ ..+|++++++++.+. +........+. ...
T Consensus 630 i-lLI~DEV~tGfGRtG~~fa~e~~gv~PDiitls--K~L~gG~~Plgav~~~~~i~~~-~~~~~~~~~~~----hg~-- 699 (831)
T 4a0g_A 630 I-PVIFDEVFTGFWRLGVETTTELLGCKPDIACFA--KLLTGGMVPLAVTLATDAVFDS-FSGDSKLKALL----HGH-- 699 (831)
T ss_dssp C-CEEEECTTTTTTTTSBSSTHHHHSSCCSEEEEC--GGGGTTSSCCEEEEECHHHHHT-TCSSCGGGSCC----CCC--
T ss_pred C-eEEEEcCccccccCCCchhhHhcCCCCcEEEEe--cccccCccCcEEEEECHHHHHH-Hhcccccccce----eec--
Confidence 9 799999876 433221 1112357888655 987664 247999999888775 22110000000 000
Q ss_pred ccccCccccccHHHHHHHHHHhhcCHHHHHHHHHHHHH--------HHHHHHHHHcCCCcCCCcccccceEEEEcCCccc
Q 012991 295 IGTRDYSAQLVIPSAVTFVSRFEGGIDGIMQRNHEQAL--------KMARMLANAWGTSLGSPPEICAAMVMVGLPSRLR 366 (452)
Q Consensus 295 ~~~~~~~~~~~~~~al~~~~~~~~g~~~~~~~~~~~~~--------~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (452)
+.+.+..+..+..++++.+.+. + +.++..++.+ .+.+.+.+.+.+. .....+.++.+.+.....
T Consensus 700 T~~g~Pla~Aaala~L~~i~~~--~---l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~---~vrg~Gl~~~iel~~~~~ 771 (831)
T 4a0g_A 700 SYSAHAMGCATAAKAIQWFKDP--E---TNHNITSQGKTLRELWDEELVQQISSHSAVQ---RVVVIGTLFALELKADAS 771 (831)
T ss_dssp TTTTCHHHHHHHHHHHHHHHCT--T---TCTTBCTTSSBBCCCSCHHHHHHHHHSTTEE---EEEEETTEEEEEEC----
T ss_pred CCcccHHHHHHHHHHHHHHHhh--H---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCce---eEeecccEEEEEEecCcc
Confidence 1112222333444556655531 2 2222222222 2334444443322 222335666666631100
Q ss_pred c--CChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHHHHhcc
Q 012991 367 V--MGEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVILLVEEG 443 (452)
Q Consensus 367 ~--~~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~~~~~~ 443 (452)
. .+...+.++.+.|.++ ||.+++ .++.||++++..+|++||++++++|++++++-
T Consensus 772 ~~~~~~~~a~~~~~~l~e~-Gv~v~p---------------------~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 772 NSGYASLYAKSLLIMLRED-GIFTRP---------------------LGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp -----CHHHHHHHHHHHHT-TEECCC---------------------BTTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ccccchHHHHHHHHHHHHC-CcEEEe---------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 0 0112456788888775 999852 13689999888889999999999999998753
No 237
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=66.02 E-value=24 Score=31.21 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=51.1
Q ss_pred HhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChH
Q 012991 92 LINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEE 171 (452)
Q Consensus 92 ~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~ 171 (452)
+|++. ..+++.+|++.++-.++.-. +.+.|-+|++.+-.-.........+ ...|.++..+.. +..+..
T Consensus 4 ~f~L~--gKvalVTGas~GIG~aia~~-------la~~Ga~Vvi~~~~~~~~~~~~~~l-~~~g~~~~~~~~--Dv~~~~ 71 (255)
T 4g81_D 4 LFDLT--GKTALVTGSARGLGFAYAEG-------LAAAGARVILNDIRATLLAESVDTL-TRKGYDAHGVAF--DVTDEL 71 (255)
T ss_dssp TTCCT--TCEEEETTCSSHHHHHHHHH-------HHHTTCEEEECCSCHHHHHHHHHHH-HHTTCCEEECCC--CTTCHH
T ss_pred CcCCC--CCEEEEeCCCcHHHHHHHHH-------HHHCCCEEEEEECCHHHHHHHHHHH-HhcCCcEEEEEe--eCCCHH
Confidence 45664 56777777666554433211 2367778877654433333334443 445666666643 333433
Q ss_pred HHHHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 172 EIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 172 ~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
.+.+.+++..++ -.++.+++.+...+..+.+
T Consensus 72 ~v~~~~~~~~~~----~G~iDiLVNNAG~~~~~~~ 102 (255)
T 4g81_D 72 AIEAAFSKLDAE----GIHVDILINNAGIQYRKPM 102 (255)
T ss_dssp HHHHHHHHHHHT----TCCCCEEEECCCCCCCCCG
T ss_pred HHHHHHHHHHHH----CCCCcEEEECCCCCCCCCh
Confidence 333333333332 3567777776655554444
No 238
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=55.87 E-value=18 Score=30.75 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=31.6
Q ss_pred CCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEE
Q 012991 188 GKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVF 225 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~i 225 (452)
+-.|..|+++-..|..|.....+++.+++++||+ .++
T Consensus 157 Gl~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l-~ii 193 (204)
T 1tks_A 157 GLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGI-KII 193 (204)
T ss_dssp TSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTC-CEE
T ss_pred CCCceEEEEEEeECCCCCcCCHHHHHHHHHHcCC-cEE
Confidence 5678888888665889999999999999999999 454
No 239
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=49.24 E-value=1.1e+02 Score=26.01 Aligned_cols=130 Identities=10% Similarity=0.099 Sum_probs=70.5
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEe--cChhHHHHHHHHHhhccccc--CCCCCCCEEEEe--CCc-chhHHHHHHHHHHhc
Q 012991 82 ILESRAAVKDLINADDVGEISLV--DNATTAAAIVLQQIGRGFTE--GRFHRNDTVLML--HCA-FQAVKKSIQAYVTRA 154 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t--~g~t~a~~~~~~~l~~~~~~--~~~~~g~~Vl~~--~~~-~~s~~~~~~~~a~~~ 154 (452)
+...-+.+.++++.. .+.+. -=++.++..++..+...+.. .....+.+|++. ..+ |.=-...+..+.+..
T Consensus 43 l~p~m~~VG~lw~~g---~i~v~q~~~aa~~~~~~l~~l~~~l~~~~~~~~~~~~vll~~v~gd~HdiG~~iv~~~l~~~ 119 (215)
T 3ezx_A 43 LSVGMKIVGDKFEAA---EIFLPQIMMSGKAMSNAMEVLTPELEKNKKEGEEAGLAITFVAEGDIHDIGHRLVTTMLGAN 119 (215)
T ss_dssp HHHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHHHHHHTSSCCC---CCEEEEEECTTCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC---CCcHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCeEEEEeCCCChhHHHHHHHHHHHHHC
Confidence 445666677777653 22221 12334444444333221111 011223466654 334 433345556666888
Q ss_pred CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEE--eccCCCCcccccHHHHHHHHHHcC----CCEEEEec
Q 012991 155 GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAII--DHITSMPCVVIPVRKLVKICRDEG----VDQVFVDA 228 (452)
Q Consensus 155 g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~--~~~~n~tG~~~~l~~i~~l~~~~~----~~~~ivD~ 228 (452)
|.++..+...-| ++++.++++ ..++++|.+ +... +.....++++.+.+++.+ + .+++=|
T Consensus 120 G~~Vi~LG~~vp-------~e~iv~~~~-----~~~~d~v~l~~S~l~--~~~~~~~~~~i~~l~~~~~~~~v-~v~vGG 184 (215)
T 3ezx_A 120 GFQIVDLGVDVL-------NENVVEEAA-----KHKGEKVLLVGSALM--TTSMLGQKDLMDRLNEEKLRDSV-KCMFGG 184 (215)
T ss_dssp SCEEEECCSSCC-------HHHHHHHHH-----HTTTSCEEEEEECSS--HHHHTHHHHHHHHHHHTTCGGGS-EEEEES
T ss_pred CCeEEEcCCCCC-------HHHHHHHHH-----HcCCCEEEEEchhcc--cCcHHHHHHHHHHHHHcCCCCCC-EEEEEC
Confidence 999998843222 566666665 357788888 6543 345556888888887764 6 677776
Q ss_pred c
Q 012991 229 A 229 (452)
Q Consensus 229 a 229 (452)
+
T Consensus 185 ~ 185 (215)
T 3ezx_A 185 A 185 (215)
T ss_dssp S
T ss_pred C
Confidence 5
No 240
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=46.18 E-value=1.2e+02 Score=25.62 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=60.9
Q ss_pred CCEEEEe--CCc-chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 130 NDTVLML--HCA-FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 130 g~~Vl~~--~~~-~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
+.+|++. ..+ |.--...+..+.+..|.++..+....| .+++.+++++ .++++|.++... +...
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp-------~~~l~~~~~~-----~~~d~v~lS~~~--~~~~ 153 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIE-------PGKFVEAVKK-----YQPDIVGMSALL--TTTM 153 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBC-------HHHHHHHHHH-----HCCSEEEEECCS--GGGT
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCC-------HHHHHHHHHH-----cCCCEEEEeccc--cccH
Confidence 3456654 323 443345555656888999998843211 5666666653 477888887653 3345
Q ss_pred ccHHHHHHHHHHcC----CCEEEEecccccCCccccccccCccEEEEc
Q 012991 207 IPVRKLVKICRDEG----VDQVFVDAAHAMGSIKIDVKEIGADFYVSN 250 (452)
Q Consensus 207 ~~l~~i~~l~~~~~----~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s 250 (452)
..++++.+.+++.+ + .+++=|+..... + ....++|.+..+
T Consensus 154 ~~~~~~i~~l~~~~~~~~~-~v~vGG~~~~~~--~-~~~~gad~~~~d 197 (210)
T 1y80_A 154 MNMKSTIDALIAAGLRDRV-KVIVGGAPLSQD--F-ADEIGADGYAPD 197 (210)
T ss_dssp HHHHHHHHHHHHTTCGGGC-EEEEESTTCCHH--H-HHHHTCSEECSS
T ss_pred HHHHHHHHHHHhcCCCCCC-eEEEECCCCCHH--H-HHHcCCeEEECC
Confidence 56788888887754 7 688877543211 1 123466665544
No 241
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=41.88 E-value=1.2e+02 Score=26.69 Aligned_cols=69 Identities=6% Similarity=0.114 Sum_probs=32.9
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCC
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSM 202 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~ 202 (452)
+.|.+|++..-.-.........+....|.++..+.. +..+...+.+.+++..++ -.++.+++.+.....
T Consensus 49 ~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--Dv~~~~~v~~~~~~~~~~----~g~id~lv~nAg~~~ 117 (277)
T 4fc7_A 49 RHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM--DVRAPPAVMAAVDQALKE----FGRIDILINCAAGNF 117 (277)
T ss_dssp TTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEEC--CTTCHHHHHHHHHHHHHH----HSCCCEEEECCCCCC
T ss_pred HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEc--CCCCHHHHHHHHHHHHHH----cCCCCEEEECCcCCC
Confidence 667777765443333333343333444666766654 333433322222222222 246677777665433
No 242
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=41.05 E-value=76 Score=25.38 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=39.3
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccH----HHHH-HHHHHcCCCEEEEecccc
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV----RKLV-KICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l----~~i~-~l~~~~~~~~~ivD~a~~ 231 (452)
.+.|.+.++ ..++..|++-.|-|+.|..-+. +..+ .++++.++++..+|+..+
T Consensus 44 ~~~l~~li~-----~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 44 LSRLSELIK-----DYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp HHHHHHHHT-----TSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHH-----HcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 788888886 4689999999998888887542 2333 455567887788899765
No 243
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=40.75 E-value=1.2e+02 Score=26.36 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=43.9
Q ss_pred HhCCCCCCcEEEecChhHHHHHH-HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCCh
Q 012991 92 LINADDVGEISLVDNATTAAAIV-LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASE 170 (452)
Q Consensus 92 ~~~~~~~~~i~~t~g~t~a~~~~-~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~ 170 (452)
++... ..+++.+|++.++-.. +..| .+.|.+|++..-.-.........+.+..+.++..+..+ ..+.
T Consensus 15 ~~~l~--~k~vlVTGas~gIG~aia~~l--------~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D--v~~~ 82 (266)
T 4egf_A 15 VLRLD--GKRALITGATKGIGADIARAF--------AAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAID--LAEP 82 (266)
T ss_dssp GGCCT--TCEEEETTTTSHHHHHHHHHH--------HHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECC--TTST
T ss_pred ccCCC--CCEEEEeCCCcHHHHHHHHHH--------HHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEec--CCCH
Confidence 34453 4556666665544332 2323 35666776654333322233333323246666666542 2332
Q ss_pred HHH---HHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 171 EEI---INEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 171 ~~~---~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
..+ .+.+.+.. .++.+++.+......+
T Consensus 83 ~~v~~~~~~~~~~~-------g~id~lv~nAg~~~~~ 112 (266)
T 4egf_A 83 DAPAELARRAAEAF-------GGLDVLVNNAGISHPQ 112 (266)
T ss_dssp THHHHHHHHHHHHH-------TSCSEEEEECCCCCCC
T ss_pred HHHHHHHHHHHHHc-------CCCCEEEECCCcCCCC
Confidence 222 33333332 4567777766544333
No 244
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=40.31 E-value=1.3e+02 Score=26.54 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|......+...++..|..+..+.. ...+...-.+.++..+ ..+++.|++..... .......+.+++.
T Consensus 19 ~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~i~~l~------~~~vdgiIi~~~~~-----~~~~~~~~~~~~~ 85 (305)
T 3g1w_A 19 WKRCLKGFEDAAQALNVTVEYRGA--AQYDIQEQITVLEQAI------AKNPAGIAISAIDP-----VELTDTINKAVDA 85 (305)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEC--SSSCHHHHHHHHHHHH------HHCCSEEEECCSST-----TTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCC--CcCCHHHHHHHHHHHH------HhCCCEEEEcCCCH-----HHHHHHHHHHHHC
Confidence 445556677777888999987421 1112222255566666 34677777754321 1234455666777
Q ss_pred CCCEEEEec
Q 012991 220 GVDQVFVDA 228 (452)
Q Consensus 220 ~~~~~ivD~ 228 (452)
+++.+++|.
T Consensus 86 ~iPvV~~~~ 94 (305)
T 3g1w_A 86 GIPIVLFDS 94 (305)
T ss_dssp TCCEEEESS
T ss_pred CCcEEEECC
Confidence 886666774
No 245
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=39.95 E-value=1.4e+02 Score=26.61 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=45.6
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH----HHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI----INEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
++..+++..+.|.-. ++++|+++..+.- .+..... +.++.+.++ ..++++|+++...++
T Consensus 178 ~~~~~v~~H~af~Yf-------~~~yGl~~~~~~~---~~~~~eps~~~l~~l~~~ik-----~~~v~~if~e~~~~~-- 240 (286)
T 3gi1_A 178 RSKTFVTQHTAFSYL-------AKRFGLKQLGISG---ISPEQEPSPRQLKEIQDFVK-----EYNVKTIFAEDNVNP-- 240 (286)
T ss_dssp SCCEEEEEESCCHHH-------HHHTTCEEEEEEC---SCC---CCHHHHHHHHHHHH-----HTTCCEEEECTTSCT--
T ss_pred CCCEEEEECCchHHH-------HHHCCCeEeeccc---cCCCCCCCHHHHHHHHHHHH-----HcCCCEEEEeCCCCh--
Confidence 467888877776433 6778999887642 1111112 455555555 367888888754432
Q ss_pred ccccHHHHHHHHHHcCCCEEE-Ee
Q 012991 205 VVIPVRKLVKICRDEGVDQVF-VD 227 (452)
Q Consensus 205 ~~~~l~~i~~l~~~~~~~~~i-vD 227 (452)
+-+..++++.|+ .++ +|
T Consensus 241 -----~~~~~la~~~g~-~v~~l~ 258 (286)
T 3gi1_A 241 -----KIAHAIAKSTGA-KVKTLS 258 (286)
T ss_dssp -----HHHHHHHHTTTC-EEEECC
T ss_pred -----HHHHHHHHHhCC-eEEEec
Confidence 334457889998 454 35
No 246
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=39.32 E-value=99 Score=27.52 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=48.1
Q ss_pred CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHH
Q 012991 137 HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKIC 216 (452)
Q Consensus 137 ~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~ 216 (452)
++-|......+...++..|.++...... .+...-.+.++..+ ..+++.|++..... ..+.+..+.+
T Consensus 14 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~l~------~~~vdgiIi~~~~~-----~~~~~~~~~~ 79 (313)
T 3m9w_A 14 LERWQKDRDIFVKKAESLGAKVFVQSAN---GNEETQMSQIENMI------NRGVDVLVIIPYNG-----QVLSNVVKEA 79 (313)
T ss_dssp SSTTHHHHHHHHHHHHHTSCEEEEEECT---TCHHHHHHHHHHHH------HTTCSEEEEECSST-----TSCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEECCC---CCHHHHHHHHHHHH------HcCCCEEEEeCCCh-----hhhHHHHHHH
Confidence 4456667778887788899999887531 12222245566666 35677777764332 1234566677
Q ss_pred HHcCCCEEEEec
Q 012991 217 RDEGVDQVFVDA 228 (452)
Q Consensus 217 ~~~~~~~~ivD~ 228 (452)
++.+++.+++|.
T Consensus 80 ~~~~iPvV~~~~ 91 (313)
T 3m9w_A 80 KQEGIKVLAYDR 91 (313)
T ss_dssp HTTTCEEEEESS
T ss_pred HHCCCeEEEECC
Confidence 788995556664
No 247
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=39.27 E-value=88 Score=27.42 Aligned_cols=76 Identities=8% Similarity=0.060 Sum_probs=45.2
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|......+...+...|.++...... .+.....+.++..+ ..+++.|++..... ....++.+.+++.
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~------~~~vdgiI~~~~~~-----~~~~~~~~~~~~~ 88 (293)
T 3l6u_A 23 AQRLINAFKAEAKANKYEALVATSQ---NSRISEREQILEFV------HLKVDAIFITTLDD-----VYIGSAIEEAKKA 88 (293)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECS---SCHHHHHHHHHHHH------HTTCSEEEEECSCT-----TTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCC---CCHHHHHHHHHHHH------HcCCCEEEEecCCh-----HHHHHHHHHHHHc
Confidence 4445566667678889999888532 12222255566666 35677777653321 1234555667777
Q ss_pred CCCEEEEecc
Q 012991 220 GVDQVFVDAA 229 (452)
Q Consensus 220 ~~~~~ivD~a 229 (452)
+++.+++|..
T Consensus 89 ~iPvV~~~~~ 98 (293)
T 3l6u_A 89 GIPVFAIDRM 98 (293)
T ss_dssp TCCEEEESSC
T ss_pred CCCEEEecCC
Confidence 8866667743
No 248
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=38.89 E-value=1e+02 Score=26.81 Aligned_cols=72 Identities=15% Similarity=0.033 Sum_probs=44.2
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|......+...++..|..+...... .+.....+.++..+ ..+++.|++..... .+..+.+++.
T Consensus 22 ~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~------~~~vdgiIi~~~~~--------~~~~~~l~~~ 84 (276)
T 3jy6_A 22 STELFKGISSILESRGYIGVLFDAN---ADIEREKTLLRAIG------SRGFDGLILQSFSN--------PQTVQEILHQ 84 (276)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECT---TCHHHHHHHHHHHH------TTTCSEEEEESSCC--------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHH------hCCCCEEEEecCCc--------HHHHHHHHHC
Confidence 4455566666678889999887532 12111144455555 46777777764331 5566677778
Q ss_pred CCCEEEEec
Q 012991 220 GVDQVFVDA 228 (452)
Q Consensus 220 ~~~~~ivD~ 228 (452)
+++.+++|.
T Consensus 85 ~iPvV~i~~ 93 (276)
T 3jy6_A 85 QMPVVSVDR 93 (276)
T ss_dssp SSCEEEESC
T ss_pred CCCEEEEec
Confidence 986666774
No 249
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=38.48 E-value=75 Score=29.38 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=8.4
Q ss_pred CCCEEEEeCCcchh
Q 012991 129 RNDTVLMLHCAFQA 142 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s 142 (452)
.|..|++.+.+-..
T Consensus 73 ~g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 73 DDRGVAVFSLEMSA 86 (338)
T ss_dssp TTCEEEEEESSSCH
T ss_pred cCCeEEEEeCCCCH
Confidence 55677766665444
No 250
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=38.42 E-value=31 Score=29.06 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=35.7
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCC-EEEEecccccCC
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVD-QVFVDAAHAMGS 234 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~-~~ivD~a~~~g~ 234 (452)
.++|+++++ .....|++- +|.+..++++.+.+|+++-. ++++|-..+++.
T Consensus 19 ~~~l~~al~------s~~~~ifll-----~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~ 69 (192)
T 3kts_A 19 QKDMEKILE------LDLTYMVML-----ETHVAQLKALVKYAQAGGKKVLLHADLVNGLKN 69 (192)
T ss_dssp SHHHHHHTT------SSCCEEEEC-----SEETTTHHHHHHHHHHTTCEEEEEGGGEETCCC
T ss_pred HHHHHHHHc------CCCCEEEEe-----cCcHHHHHHHHHHHHHcCCeEEEecCchhccCC
Confidence 478888884 445666663 36788999999999999731 566676665544
No 251
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=38.16 E-value=2e+02 Score=26.38 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=49.9
Q ss_pred CCCCCCEEEEeCCcchh-------HHHHHHHHHHhcCcEEEEEeCCCCC----CChHHH-HHHHHHHHhccccCCCceEE
Q 012991 126 RFHRNDTVLMLHCAFQA-------VKKSIQAYVTRAGGSVVEVQLPFPL----ASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 126 ~~~~g~~Vl~~~~~~~s-------~~~~~~~~a~~~g~~v~~~~~~~~~----~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
.+++||+|-+..|+.+. ...+...+ +..|.+++.-+..... .....- .++|.+++. ++.+++
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L-~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~-----Dp~i~a 82 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYL-LQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIR-----NPNVSC 82 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHH-HHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHH-----CTTEEE
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHH-HhCCCEEEEcccccccccccCCCHHHHHHHHHHHhh-----CCCCCE
Confidence 57999999988776532 33444554 5679999875432111 111223 788888886 688999
Q ss_pred EEEeccCCCCccccc
Q 012991 194 AIIDHITSMPCVVIP 208 (452)
Q Consensus 194 v~~~~~~n~tG~~~~ 208 (452)
|++.-...-+-.+.|
T Consensus 83 I~~~rGG~g~~rlL~ 97 (336)
T 3sr3_A 83 IMSTIGGMNSNSLLP 97 (336)
T ss_dssp EEESCCCSCGGGGGG
T ss_pred EEEccccccHHHHhh
Confidence 998877765555554
No 252
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=36.64 E-value=2.9e+02 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=20.9
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHH
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
.-||+-+..++.+||.++++..+..-
T Consensus 398 ~~ria~gsg~~~~~v~~ll~~~~~~~ 423 (443)
T 3dm5_A 398 IKRIARGSGTSTKDVKELLDQYRQMK 423 (443)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 45899888899999999988765543
No 253
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=36.00 E-value=73 Score=21.91 Aligned_cols=50 Identities=8% Similarity=0.178 Sum_probs=36.9
Q ss_pred ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 369 GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 369 ~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
+..+++.+...|... |+..... ..+++.|+-++.+.+.++.+.+++.|++
T Consensus 19 ~~~~A~~~~~~L~~~-g~~~~i~-------------------~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 19 VKANADSLASNAEAK-GFDSIVL-------------------LKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEE-------------------EETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-CCCeEEe-------------------cCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 356788899999765 7543221 1235788888888899999999999987
No 254
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=35.84 E-value=66 Score=27.31 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCceEEEEEecc-CCCCcccccHHHHHHHHHHcCCCEEE
Q 012991 188 GKMIRLAIIDHI-TSMPCVVIPVRKLVKICRDEGVDQVF 225 (452)
Q Consensus 188 ~~~~~lv~~~~~-~n~tG~~~~l~~i~~l~~~~~~~~~i 225 (452)
+-.|..|+++-. -|..|.....+++.+++++||+ .++
T Consensus 156 Gl~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l-~~i 193 (206)
T 3mio_A 156 GLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGL-ALI 193 (206)
T ss_dssp TSCSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTC-EEE
T ss_pred CCCceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCC-cEE
Confidence 567777777652 5678999999999999999999 555
No 255
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=35.68 E-value=1.2e+02 Score=26.66 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=26.4
Q ss_pred CcEEEecChhHHHHHHH-HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeC
Q 012991 99 GEISLVDNATTAAAIVL-QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQL 163 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~-~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~ 163 (452)
..+++.+|++.++-.++ ..| .+.|-+|++.+-.-.........+ +..|.++..+..
T Consensus 7 gKvalVTGas~GIG~aiA~~l--------a~~Ga~Vv~~~~~~~~~~~~~~~i-~~~g~~~~~~~~ 63 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKF--------ALNDSIVVAVELLEDRLNQIVQEL-RGMGKEVLGVKA 63 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHH--------HHTTCEEEEEESCHHHHHHHHHHH-HHTTCCEEEEEC
T ss_pred CCEEEEeCCCCHHHHHHHHHH--------HHcCCEEEEEECCHHHHHHHHHHH-HhcCCcEEEEEc
Confidence 45555555555544333 222 255666666543332222333332 444666666644
No 256
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=35.47 E-value=1.7e+02 Score=23.44 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=52.5
Q ss_pred CEEEEe--CC-cchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccc
Q 012991 131 DTVLML--HC-AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVI 207 (452)
Q Consensus 131 ~~Vl~~--~~-~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~ 207 (452)
.+|++. .. .|.--...+..+.+..|.++..+....| ++++.+++. ..++.+|.++...+ ....
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p-------~e~lv~aa~-----~~~~diV~lS~~~~--~~~~ 84 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQT-------PEQVAMAAV-----QEDVDVIGVSILNG--AHLH 84 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCC-------HHHHHHHHH-----HTTCSEEEEEESSS--CHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC-------HHHHHHHHH-----hcCCCEEEEEeech--hhHH
Confidence 456653 33 3444444555556778999998843211 566666665 35788888876543 4456
Q ss_pred cHHHHHHHHHHcC---CCEEEEecc
Q 012991 208 PVRKLVKICRDEG---VDQVFVDAA 229 (452)
Q Consensus 208 ~l~~i~~l~~~~~---~~~~ivD~a 229 (452)
.++++.+.+++.+ + .+++=|.
T Consensus 85 ~~~~~i~~L~~~g~~~i-~v~vGG~ 108 (161)
T 2yxb_A 85 LMKRLMAKLRELGADDI-PVVLGGT 108 (161)
T ss_dssp HHHHHHHHHHHTTCTTS-CEEEEEC
T ss_pred HHHHHHHHHHhcCCCCC-EEEEeCC
Confidence 6888888887754 6 5777654
No 257
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=35.41 E-value=1.2e+02 Score=27.25 Aligned_cols=75 Identities=8% Similarity=0.123 Sum_probs=43.9
Q ss_pred CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC-CChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccH
Q 012991 131 DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL-ASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV 209 (452)
Q Consensus 131 ~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~-~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l 209 (452)
..+++.++.|.-. ++++|++...+.-..+. ...-.-+.++.+.++ ..++++|+++...++
T Consensus 184 ~~~v~~H~af~Yf-------~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik-----~~~v~~if~e~~~~~------- 244 (294)
T 3hh8_A 184 KLIVTSEGCFKYF-------SKAYGVPSAYIWEINTEEEGTPDQISSLIEKLK-----VIKPSALFVESSVDR------- 244 (294)
T ss_dssp CCEEEEESCCHHH-------HHHHTCCEEEEESSCCSCCCCHHHHHHHHHHHH-----HSCCSCEEEETTSCS-------
T ss_pred cEEEEECChHHHH-------HHHcCCceeeccccCCCCCCCHHHHHHHHHHHH-----HcCCCEEEEeCCCCc-------
Confidence 5677776666433 56679887766421111 111122566666665 357778888654432
Q ss_pred HHHHHHHHHcCCCEEE
Q 012991 210 RKLVKICRDEGVDQVF 225 (452)
Q Consensus 210 ~~i~~l~~~~~~~~~i 225 (452)
+.+..++++.|+ .++
T Consensus 245 ~~~~~ia~~~g~-~v~ 259 (294)
T 3hh8_A 245 RPMETVSKDSGI-PIY 259 (294)
T ss_dssp HHHHHHHHHHCC-CEE
T ss_pred HHHHHHHHHhCC-cEE
Confidence 345677899998 454
No 258
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=35.32 E-value=58 Score=28.09 Aligned_cols=36 Identities=3% Similarity=-0.013 Sum_probs=29.6
Q ss_pred CCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEE
Q 012991 188 GKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVF 225 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~i 225 (452)
+-.|..|+++-. |..|.....+++.+++++||+ .++
T Consensus 176 Gl~Pa~VicEi~-~ddG~mar~~~l~~fA~~h~l-~~i 211 (227)
T 1snn_A 176 NLVPITTICEMM-GDDGNAMSKNETKRYAEKHNL-IYL 211 (227)
T ss_dssp TSCSEEEEEEEB-CTTSSBCCHHHHHHHHHHHTC-CEE
T ss_pred CCCceEEEEEEe-CCCCCcCCHHHHHHHHHHcCC-cEE
Confidence 567777777755 677999999999999999999 454
No 259
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=35.16 E-value=57 Score=22.73 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=36.9
Q ss_pred ChhhHHHHHHHHhhhcceEeeecccCCCCCCCCCCCCCCCCCCccceEEecccccCCHHHHHHHHHHHHH
Q 012991 369 GEDDALRLRGHLRVRFGVEVPIHYQAPKDDGQPQAGARDKDGIITGYARISHQVYNTLEDYEKFRDAVIL 438 (452)
Q Consensus 369 ~~~~~~~l~~~L~~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l~~ 438 (452)
+..+++.+...|... |+..... ...++.|+-++.+.+.++.+.+++.|++
T Consensus 19 ~~~~A~~l~~~L~~~-G~~a~i~-------------------~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 19 GAEQAETVRAQLAFE-GFDSKIT-------------------TNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEE-------------------ECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-CCCeEEE-------------------eCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 355788899999764 7643221 1235788888888899999999999987
No 260
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=34.33 E-value=68 Score=27.49 Aligned_cols=36 Identities=3% Similarity=0.012 Sum_probs=29.3
Q ss_pred CCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEE
Q 012991 188 GKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVF 225 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~i 225 (452)
+-.|..|+++-. +..|...+.+++.+++++||+ .++
T Consensus 165 Gl~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l-~~i 200 (217)
T 1g57_A 165 GFKPAGVLCELT-NDDGTMARAPECIEFANKHNM-ALV 200 (217)
T ss_dssp TSCSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTC-EEE
T ss_pred CCCceEEEEEEe-CCCCCccCHHHHHHHHHHcCC-CEE
Confidence 567777777644 678999999999999999999 554
No 261
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=34.23 E-value=91 Score=21.86 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=30.4
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEe
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD 227 (452)
..+..++++ ..+.++|++.+--.+ .-...|-.+|+++++++++++
T Consensus 16 ~~~v~kai~-----~gkaklViiA~D~~~----~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 16 TKQTVKALK-----RGSVKEVVVAKDADP----ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHT-----TTCEEEEEEETTSCH----HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHH-----cCCeeEEEEeCCCCH----HHHHHHHHHHHHcCCCEEEEC
Confidence 466667775 467888888654332 235678889999999645555
No 262
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=33.87 E-value=1.5e+02 Score=25.85 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH
Q 012991 139 AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD 218 (452)
Q Consensus 139 ~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~ 218 (452)
-|......+...++..|..+...... .+...-.+.++..+ ..+++.|++..... ....+..++.+.+++
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~------~~~vdgiIi~~~~~--~~~~~~~~~~~~~~~ 97 (298)
T 3tb6_A 29 IFPSIIRGIESYLSEQGYSMLLTSTN---NNPDNERRGLENLL------SQHIDGLIVEPTKS--ALQTPNIGYYLNLEK 97 (298)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHH------HTCCSEEEECCSST--TSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHH------HCCCCEEEEecccc--cccCCcHHHHHHHHh
Confidence 34556677777788889999888532 12222245555555 35677777754332 111233455566677
Q ss_pred cCCCEEEEec
Q 012991 219 EGVDQVFVDA 228 (452)
Q Consensus 219 ~~~~~~ivD~ 228 (452)
.+++.+++|.
T Consensus 98 ~~iPvV~~~~ 107 (298)
T 3tb6_A 98 NGIPFAMINA 107 (298)
T ss_dssp TTCCEEEESS
T ss_pred cCCCEEEEec
Confidence 7886666774
No 263
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=33.62 E-value=2.5e+02 Score=26.20 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=49.7
Q ss_pred CCCCCCEEEEeCCcchh-------HHHHHHHHHHhcCcEEEEEeCCCCC----CChHHH-HHHHHHHHhccccCCCceEE
Q 012991 126 RFHRNDTVLMLHCAFQA-------VKKSIQAYVTRAGGSVVEVQLPFPL----ASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 126 ~~~~g~~Vl~~~~~~~s-------~~~~~~~~a~~~g~~v~~~~~~~~~----~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
.+++||+|-+..|+.+. ...+...+ +..|.+|+.-+..... .....- .++|.+++. ++.+++
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L-~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~-----Dp~i~a 112 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFL-QRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVY-----NPDITC 112 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHH-HHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHT-----CTTEEE
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHH-HhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhh-----CCCCCE
Confidence 57899999988877532 23444444 5679999876432111 111223 788888885 678899
Q ss_pred EEEeccCCCCccccc
Q 012991 194 AIIDHITSMPCVVIP 208 (452)
Q Consensus 194 v~~~~~~n~tG~~~~ 208 (452)
|++.-...-+-.+.|
T Consensus 113 I~~~rGGyga~rlLp 127 (371)
T 3tla_A 113 IMSTIGGDNSNSLLP 127 (371)
T ss_dssp EEESCCCSCGGGGGG
T ss_pred EEEccccccHHHHHh
Confidence 998877765555554
No 264
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=33.43 E-value=2.7e+02 Score=25.29 Aligned_cols=77 Identities=9% Similarity=0.108 Sum_probs=49.6
Q ss_pred CCCCCCEEEEeCCcch-------hHHHHHHHHHHhcCcEEEEEeCCCCC----CChHHH-HHHHHHHHhccccCCCceEE
Q 012991 126 RFHRNDTVLMLHCAFQ-------AVKKSIQAYVTRAGGSVVEVQLPFPL----ASEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 126 ~~~~g~~Vl~~~~~~~-------s~~~~~~~~a~~~g~~v~~~~~~~~~----~~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
.+++||+|-+..|+.. ....+...+ +..|.+++.-+.-... .....- .++|.+++. ++.+++
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L-~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~-----Dp~i~a 81 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRL-TDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFN-----DSSVKA 81 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHH-HHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHH-----CTTEEE
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHH-HhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhh-----CCCCCE
Confidence 5799999888777532 233455554 6679999876432111 111223 788888886 688999
Q ss_pred EEEeccCCCCccccc
Q 012991 194 AIIDHITSMPCVVIP 208 (452)
Q Consensus 194 v~~~~~~n~tG~~~~ 208 (452)
|+..-...-+-.+.|
T Consensus 82 I~~~rGG~g~~rlL~ 96 (327)
T 4h1h_A 82 ILTVIGGFNSNQLLP 96 (327)
T ss_dssp EEESCCCSCGGGGGG
T ss_pred EEEcCCchhHHHHhh
Confidence 998877664455554
No 265
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=33.35 E-value=1.8e+02 Score=25.39 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=45.1
Q ss_pred hCCCCCCcEEEecChhHHHHH-HHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChH
Q 012991 93 INADDVGEISLVDNATTAAAI-VLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEE 171 (452)
Q Consensus 93 ~~~~~~~~i~~t~g~t~a~~~-~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~ 171 (452)
+... ..+++.+|++.++-. ++..| .+.|.+|++..-.-.........+ +..|.++..+.. +..+..
T Consensus 22 ~~l~--gk~~lVTGas~gIG~aia~~l--------a~~G~~V~~~~r~~~~~~~~~~~l-~~~~~~~~~~~~--Dv~d~~ 88 (271)
T 4ibo_A 22 FDLG--GRTALVTGSSRGLGRAMAEGL--------AVAGARILINGTDPSRVAQTVQEF-RNVGHDAEAVAF--DVTSES 88 (271)
T ss_dssp GCCT--TCEEEETTCSSHHHHHHHHHH--------HHTTCEEEECCSCHHHHHHHHHHH-HHTTCCEEECCC--CTTCHH
T ss_pred cCCC--CCEEEEeCCCcHHHHHHHHHH--------HHCCCEEEEEeCCHHHHHHHHHHH-HhcCCceEEEEc--CCCCHH
Confidence 4554 455666665554433 33333 356777777654333333333332 334656666643 333333
Q ss_pred HHHHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 172 EIINEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 172 ~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
.+.+.+++..++ ..++.+++.+......+
T Consensus 89 ~v~~~~~~~~~~----~g~iD~lv~nAg~~~~~ 117 (271)
T 4ibo_A 89 EIIEAFARLDEQ----GIDVDILVNNAGIQFRK 117 (271)
T ss_dssp HHHHHHHHHHHH----TCCCCEEEECCCCCCCC
T ss_pred HHHHHHHHHHHH----CCCCCEEEECCCCCCCC
Confidence 332333333322 34677777766544333
No 266
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=33.34 E-value=2.1e+02 Score=24.90 Aligned_cols=91 Identities=9% Similarity=0.062 Sum_probs=41.9
Q ss_pred cEEEecChhHHHHHH-HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHH
Q 012991 100 EISLVDNATTAAAIV-LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFK 178 (452)
Q Consensus 100 ~i~~t~g~t~a~~~~-~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~ 178 (452)
..++.+|++.++-.. +..| .+.|.+|++..-.-.........+ +..+.++..+.. +..+...+.+.++
T Consensus 5 k~~lVTGas~GIG~aia~~l--------a~~G~~V~~~~r~~~~~~~~~~~l-~~~~~~~~~~~~--Dv~d~~~v~~~~~ 73 (264)
T 3tfo_A 5 KVILITGASGGIGEGIAREL--------GVAGAKILLGARRQARIEAIATEI-RDAGGTALAQVL--DVTDRHSVAAFAQ 73 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHH--------HHTTCEEEEEESSHHHHHHHHHHH-HHTTCEEEEEEC--CTTCHHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHH--------HHCCCEEEEEECCHHHHHHHHHHH-HhcCCcEEEEEc--CCCCHHHHHHHHH
Confidence 445555555444332 2333 356777776543322222233332 334667777654 3334333222222
Q ss_pred HHHhccccCCCceEEEEEeccCCCCcc
Q 012991 179 KGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 179 ~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
+..++ ..++.+++.+......+.
T Consensus 74 ~~~~~----~g~iD~lVnnAG~~~~~~ 96 (264)
T 3tfo_A 74 AAVDT----WGRIDVLVNNAGVMPLSP 96 (264)
T ss_dssp HHHHH----HSCCCEEEECCCCCCCCC
T ss_pred HHHHH----cCCCCEEEECCCCCCCCC
Confidence 22222 246777777765544443
No 267
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=32.82 E-value=1.9e+02 Score=25.20 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=41.7
Q ss_pred CcEEEecChhHHHH-HHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHH
Q 012991 99 GEISLVDNATTAAA-IVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~-~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l 177 (452)
...++.+|++.++- .++..| .+.|.+|++..-.-......+....+..+.++..+.. +..+...+.+.+
T Consensus 29 ~k~vlITGas~gIG~~la~~l--------~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~v~~~~ 98 (271)
T 4iin_A 29 GKNVLITGASKGIGAEIAKTL--------ASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKF--DAASESDFIEAI 98 (271)
T ss_dssp CCEEEETTCSSHHHHHHHHHH--------HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEEC--CTTCHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHH--------HHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEEC--CCCCHHHHHHHH
Confidence 34555555554443 223333 2556666654332222223332223445666766654 233333322223
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
++..++ ..++..++.+......+.
T Consensus 99 ~~~~~~----~g~id~li~nAg~~~~~~ 122 (271)
T 4iin_A 99 QTIVQS----DGGLSYLVNNAGVVRDKL 122 (271)
T ss_dssp HHHHHH----HSSCCEEEECCCCCCCCC
T ss_pred HHHHHh----cCCCCEEEECCCcCCCcc
Confidence 322222 246777777665544433
No 268
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=32.73 E-value=1.7e+02 Score=25.49 Aligned_cols=92 Identities=11% Similarity=0.173 Sum_probs=40.9
Q ss_pred CcEEEecChhHHHHHH-HHHhhcccccCCCCCCCEEEEe-CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHH
Q 012991 99 GEISLVDNATTAAAIV-LQQIGRGFTEGRFHRNDTVLML-HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINE 176 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~-~~~l~~~~~~~~~~~g~~Vl~~-~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~ 176 (452)
..+++.+|++.++-.. +..| .+.|.+|++. ...-......... .+..|.++..+.. +..+...+.+.
T Consensus 18 ~k~~lVTGas~gIG~aia~~l--------~~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--Dv~~~~~v~~~ 86 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHL--------GRLGAKVVVNYANSTKDAEKVVSE-IKALGSDAIAIKA--DIRQVPEIVKL 86 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHH--------HHTTCEEEEEESSCHHHHHHHHHH-HHHTTCCEEEEEC--CTTSHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHH--------HHCCCEEEEEcCCCHHHHHHHHHH-HHhcCCcEEEEEc--CCCCHHHHHHH
Confidence 3555666655544332 2333 3567777663 3222222222222 2344666666654 33333332222
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
+++..++ -.++.+++.+......+.
T Consensus 87 ~~~~~~~----~g~id~lvnnAg~~~~~~ 111 (270)
T 3is3_A 87 FDQAVAH----FGHLDIAVSNSGVVSFGH 111 (270)
T ss_dssp HHHHHHH----HSCCCEEECCCCCCCCCC
T ss_pred HHHHHHH----cCCCCEEEECCCCCCCCC
Confidence 3332222 245667766655444443
No 269
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=32.42 E-value=1.2e+02 Score=27.00 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=42.4
Q ss_pred CcEEEecChhHHHHHHH-HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHH
Q 012991 99 GEISLVDNATTAAAIVL-QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~-~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l 177 (452)
..+++.+|++.++-.++ ..| .+.|-+|++.+-.-. .....++..|.+...+.. +..+...+-+.+
T Consensus 29 gKvalVTGas~GIG~aiA~~l--------a~~Ga~V~i~~r~~~----~l~~~~~~~g~~~~~~~~--Dv~~~~~v~~~~ 94 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRF--------VAEGARVFITGRRKD----VLDAAIAEIGGGAVGIQA--DSANLAELDRLY 94 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHH--------HHTTCEEEEEESCHH----HHHHHHHHHCTTCEEEEC--CTTCHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHH--------HHCCCEEEEEECCHH----HHHHHHHHcCCCeEEEEe--cCCCHHHHHHHH
Confidence 45666556555554333 333 367777776543322 222223444555555543 333333322222
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
++..++ -.++.+++.+...+..+.+
T Consensus 95 ~~~~~~----~G~iDiLVNNAG~~~~~~~ 119 (273)
T 4fgs_A 95 EKVKAE----AGRIDVLFVNAGGGSMLPL 119 (273)
T ss_dssp HHHHHH----HSCEEEEEECCCCCCCCCT
T ss_pred HHHHHH----cCCCCEEEECCCCCCCCCh
Confidence 222222 2567777776665554444
No 270
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=31.60 E-value=1.9e+02 Score=24.92 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=32.4
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
+.|.+|++..-.-.........+ +..|.++..+.. +..+...+.+.+++..+ . .++.+++.+......+.
T Consensus 29 ~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~--Dv~~~~~v~~~~~~~~~----~-g~id~lv~nAg~~~~~~ 98 (252)
T 3h7a_A 29 AEGFTVFAGRRNGEKLAPLVAEI-EAAGGRIVARSL--DARNEDEVTAFLNAADA----H-APLEVTIFNVGANVNFP 98 (252)
T ss_dssp HTTCEEEEEESSGGGGHHHHHHH-HHTTCEEEEEEC--CTTCHHHHHHHHHHHHH----H-SCEEEEEECCCCCCCCC
T ss_pred HCCCEEEEEeCCHHHHHHHHHHH-HhcCCeEEEEEC--cCCCHHHHHHHHHHHHh----h-CCceEEEECCCcCCCCC
Confidence 55666666543333323333332 334667777754 33333222222222221 1 46777777665544333
No 271
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=31.42 E-value=1.4e+02 Score=26.14 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|......+...++..|.++..... .+...-.+.++..+. .+++.|++..... .......+.+++.
T Consensus 17 ~~~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~i~~l~~------~~vdgiii~~~~~-----~~~~~~~~~~~~~ 81 (306)
T 8abp_A 17 FQTEWKFADKAGKDLGFEVIKIAV----PDGEKTLNAIDSLAA------SGAKGFVICTPDP-----KLGSAIVAKARGY 81 (306)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEEC----CSHHHHHHHHHHHHH------TTCCEEEEECSCG-----GGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHHHH------cCCCEEEEeCCCc-----hhhHHHHHHHHHC
Confidence 444556666667888998887742 222222566666663 5677777764321 1344555667778
Q ss_pred CCCEEEEe
Q 012991 220 GVDQVFVD 227 (452)
Q Consensus 220 ~~~~~ivD 227 (452)
+++.+++|
T Consensus 82 ~iPvV~~~ 89 (306)
T 8abp_A 82 DMKVIAVD 89 (306)
T ss_dssp TCEEEEES
T ss_pred CCcEEEeC
Confidence 99555667
No 272
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=31.11 E-value=1.2e+02 Score=27.21 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=46.5
Q ss_pred CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHH
Q 012991 138 CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR 217 (452)
Q Consensus 138 ~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~ 217 (452)
+-|.....++...++..|.++...... .+...-.+.++..+. .+++.|++..... .......+.++
T Consensus 16 ~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~~~~------~~vdgiIi~~~~~-----~~~~~~~~~~~ 81 (330)
T 3uug_A 16 ARWIDDGNNIVKQLQEAGYKTDLQYAD---DDIPNQLSQIENMVT------KGVKVLVIASIDG-----TTLSDVLKQAG 81 (330)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHH------HTCSEEEECCSSG-----GGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeeCC---CCHHHHHHHHHHHHH------cCCCEEEEEcCCc-----hhHHHHHHHHH
Confidence 345556677777788889998887421 122222566666663 4677777754321 23455667778
Q ss_pred HcCCCEEEEec
Q 012991 218 DEGVDQVFVDA 228 (452)
Q Consensus 218 ~~~~~~~ivD~ 228 (452)
+.|++.+++|.
T Consensus 82 ~~giPvV~~~~ 92 (330)
T 3uug_A 82 EQGIKVIAYDR 92 (330)
T ss_dssp HTTCEEEEESS
T ss_pred HCCCCEEEECC
Confidence 88995556664
No 273
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=30.72 E-value=2.3e+02 Score=24.55 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=41.7
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD 218 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~ 218 (452)
|......+...++..|..+... ..+.+... ...++..+ ..+++.|++...... ++..+.+++
T Consensus 28 ~~~~~~gi~~~a~~~g~~~~~~----~~~~~~~~~~~~~~~~~------~~~vdgiIi~~~~~~-------~~~~~~l~~ 90 (292)
T 3k4h_A 28 FPEVIRGISSFAHVEGYALYMS----TGETEEEIFNGVVKMVQ------GRQIGGIILLYSREN-------DRIIQYLHE 90 (292)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEC----CCCSHHHHHHHHHHHHH------TTCCCEEEESCCBTT-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEE----eCCCCHHHHHHHHHHHH------cCCCCEEEEeCCCCC-------hHHHHHHHH
Confidence 3445566666678889988776 32333222 33333333 467777777533211 245566777
Q ss_pred cCCCEEEEecc
Q 012991 219 EGVDQVFVDAA 229 (452)
Q Consensus 219 ~~~~~~ivD~a 229 (452)
.+++.+++|..
T Consensus 91 ~~iPvV~~~~~ 101 (292)
T 3k4h_A 91 QNFPFVLIGKP 101 (292)
T ss_dssp TTCCEEEESCC
T ss_pred CCCCEEEECCC
Confidence 78865667743
No 274
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=30.26 E-value=1.6e+02 Score=25.77 Aligned_cols=77 Identities=5% Similarity=0.011 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|......+...++..|.++...... ...+...-.+.++..+ ..+++.|++..... ..+....+.+++.
T Consensus 18 ~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~i~~l~------~~~vdgiii~~~~~-----~~~~~~~~~~~~~ 85 (297)
T 3rot_A 18 WTSLFQGAKKAAEELKVDLQILAPP-GANDVPKQVQFIESAL------ATYPSGIATTIPSD-----TAFSKSLQRANKL 85 (297)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCS-SSCCHHHHHHHHHHHH------HTCCSEEEECCCCS-----STTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcEEEEECCC-CcCCHHHHHHHHHHHH------HcCCCEEEEeCCCH-----HHHHHHHHHHHHC
Confidence 4445566767678889999887421 0012222256666666 35677777753321 1234556667778
Q ss_pred CCCEEEEec
Q 012991 220 GVDQVFVDA 228 (452)
Q Consensus 220 ~~~~~ivD~ 228 (452)
|++.+.+|.
T Consensus 86 giPvV~~~~ 94 (297)
T 3rot_A 86 NIPVIAVDT 94 (297)
T ss_dssp TCCEEEESC
T ss_pred CCCEEEEcC
Confidence 986566674
No 275
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=30.22 E-value=1.9e+02 Score=22.37 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=56.4
Q ss_pred cchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH
Q 012991 139 AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD 218 (452)
Q Consensus 139 ~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~ 218 (452)
.|.--...+..+.+..|.++..+....| ++++.+++.+ .++.+|.++...+ .....++++.+..++
T Consensus 15 ~HdiG~~~v~~~l~~~G~~Vi~lG~~~p-------~e~~v~~a~~-----~~~d~v~lS~~~~--~~~~~~~~~i~~l~~ 80 (137)
T 1ccw_A 15 CHAVGNKILDHAFTNAGFNVVNIGVLSP-------QELFIKAAIE-----TKADAILVSSLYG--QGEIDCKGLRQKCDE 80 (137)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEEEC-------HHHHHHHHHH-----HTCSEEEEEECSS--THHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCC-------HHHHHHHHHh-----cCCCEEEEEecCc--CcHHHHHHHHHHHHh
Confidence 4444445555556888999998743111 5666666653 5677888876553 334457777777776
Q ss_pred c---CCCEEEEecccccCCccc-----cccccCccEEEEc
Q 012991 219 E---GVDQVFVDAAHAMGSIKI-----DVKEIGADFYVSN 250 (452)
Q Consensus 219 ~---~~~~~ivD~a~~~g~~~~-----~~~~~~~d~~~~s 250 (452)
. ++ .+++=|+.-.+...+ -+...|+|.+...
T Consensus 81 ~g~~~i-~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~ 119 (137)
T 1ccw_A 81 AGLEGI-LLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAP 119 (137)
T ss_dssp TTCTTC-EEEEEESCSSSSCCHHHHHHHHHHTTCSEECCT
T ss_pred cCCCCC-EEEEECCCcCchHhhhhhHHHHHHCCCCEEECC
Confidence 5 46 677776543222111 1445567666544
No 276
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=30.10 E-value=2.2e+02 Score=24.81 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=40.4
Q ss_pred CcEEEecChhHHHHH-HHHHhhcccccCCCCCCCEEEEeCC-cchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHH
Q 012991 99 GEISLVDNATTAAAI-VLQQIGRGFTEGRFHRNDTVLMLHC-AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINE 176 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~-~~~~l~~~~~~~~~~~g~~Vl~~~~-~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~ 176 (452)
..+++.+|++.++-. ++..| .+.|.+|++..- .-......... .+..+.++..+.. +..+...+.+.
T Consensus 28 ~k~vlVTGas~gIG~aia~~l--------a~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--D~~d~~~v~~~ 96 (269)
T 4dmm_A 28 DRIALVTGASRGIGRAIALEL--------AAAGAKVAVNYASSAGAADEVVAA-IAAAGGEAFAVKA--DVSQESEVEAL 96 (269)
T ss_dssp TCEEEETTCSSHHHHHHHHHH--------HHTTCEEEEEESSCHHHHHHHHHH-HHHTTCCEEEEEC--CTTSHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHH--------HHCCCEEEEEeCCChHHHHHHHHH-HHhcCCcEEEEEC--CCCCHHHHHHH
Confidence 455555555544433 23333 356777766433 22222222222 2344666666654 33333332222
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
+++..++ ..++.+++.+......+
T Consensus 97 ~~~~~~~----~g~id~lv~nAg~~~~~ 120 (269)
T 4dmm_A 97 FAAVIER----WGRLDVLVNNAGITRDT 120 (269)
T ss_dssp HHHHHHH----HSCCCEEEECCCCCCCC
T ss_pred HHHHHHH----cCCCCEEEECCCCCCCC
Confidence 2222222 24567777766554433
No 277
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=29.16 E-value=2.1e+02 Score=25.06 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=31.2
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
+.|.+|++..-.-.........+ ...+.++..+.. +..+...+.+.+++..++ -.++.+++.+......+.
T Consensus 54 ~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~--Dl~d~~~v~~~~~~~~~~----~g~iD~lvnnAg~~~~~~ 124 (276)
T 3r1i_A 54 EAGAQVAVAARHSDALQVVADEI-AGVGGKALPIRC--DVTQPDQVRGMLDQMTGE----LGGIDIAVCNAGIVSVQA 124 (276)
T ss_dssp HTTCEEEEEESSGGGGHHHHHHH-HHTTCCCEEEEC--CTTCHHHHHHHHHHHHHH----HSCCSEEEECCCCCCCCC
T ss_pred HCCCEEEEEeCCHHHHHHHHHHH-HhcCCeEEEEEc--CCCCHHHHHHHHHHHHHH----cCCCCEEEECCCCCCCCC
Confidence 55666666433322222333332 334555555544 333433322222222222 145677777665444333
No 278
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=29.08 E-value=2.4e+02 Score=24.55 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCCCEEEEe-CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 128 HRNDTVLML-HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 128 ~~g~~Vl~~-~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
+.|.+|++. ...-......... .+..|.++..+.. +..+...+.+.+++..++ ..++.+++.+......+
T Consensus 53 ~~G~~V~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~--Dv~d~~~v~~~~~~~~~~----~g~iD~lvnnAg~~~~~ 123 (271)
T 3v2g_A 53 LEGAAVALTYVNAAERAQAVVSE-IEQAGGRAVAIRA--DNRDAEAIEQAIRETVEA----LGGLDILVNSAGIWHSA 123 (271)
T ss_dssp HTTCEEEEEESSCHHHHHHHHHH-HHHTTCCEEEEEC--CTTCHHHHHHHHHHHHHH----HSCCCEEEECCCCCCCC
T ss_pred HCCCEEEEEeCCCHHHHHHHHHH-HHhcCCcEEEEEC--CCCCHHHHHHHHHHHHHH----cCCCcEEEECCCCCCCC
Confidence 567777664 3322222222222 2344666666654 333333332223333322 24577777766544333
No 279
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=28.65 E-value=1.8e+02 Score=26.09 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|......+...+...|..+...... .+...-.+.++..+ ..+++.|++.... .+-+.+.+++++.
T Consensus 78 ~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~------~~~vdgiIi~~~~------~~~~~~~~~~~~~ 142 (338)
T 3dbi_A 78 FSELLFHAARMAEEKGRQLLLADGK---HSAEEERQAIQYLL------DLRCDAIMIYPRF------LSVDEIDDIIDAH 142 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECT---TSHHHHHHHHHHHH------HTTCSEEEECCSS------SCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHH------hCCCCEEEEeCCC------CChHHHHHHHHcC
Confidence 4455566666678889998887531 12111144455555 3567777764322 1235677888888
Q ss_pred CCCEEEEec
Q 012991 220 GVDQVFVDA 228 (452)
Q Consensus 220 ~~~~~ivD~ 228 (452)
+++.+++|.
T Consensus 143 ~iPvV~~~~ 151 (338)
T 3dbi_A 143 SQPIMVLNR 151 (338)
T ss_dssp SSCEEEESS
T ss_pred CCCEEEEcC
Confidence 985566674
No 280
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=28.49 E-value=2.3e+02 Score=24.78 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=42.1
Q ss_pred cchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHH
Q 012991 139 AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR 217 (452)
Q Consensus 139 ~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~ 217 (452)
-|.....++...++..|..+... ..+.+... .+.++..+ ..+++.|++..... + +++.+.++
T Consensus 26 f~~~~~~gi~~~a~~~g~~~~~~----~~~~~~~~~~~~~~~l~------~~~vdGiI~~~~~~------~-~~~~~~l~ 88 (295)
T 3hcw_A 26 FYINVLLGISETCNQHGYGTQTT----VSNNMNDLMDEVYKMIK------QRMVDAFILLYSKE------N-DPIKQMLI 88 (295)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEC----CCCSHHHHHHHHHHHHH------TTCCSEEEESCCCT------T-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE----cCCCChHHHHHHHHHHH------hCCcCEEEEcCccc------C-hHHHHHHH
Confidence 34556677777788889988766 22333222 33333333 46777777753321 1 24456667
Q ss_pred HcCCCEEEEec
Q 012991 218 DEGVDQVFVDA 228 (452)
Q Consensus 218 ~~~~~~~ivD~ 228 (452)
+.+++.|++|.
T Consensus 89 ~~~iPvV~i~~ 99 (295)
T 3hcw_A 89 DESMPFIVIGK 99 (295)
T ss_dssp HTTCCEEEESC
T ss_pred hCCCCEEEECC
Confidence 77886666774
No 281
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=28.47 E-value=83 Score=29.24 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHhHhCCCCCCcE-EEecC--------hhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcc
Q 012991 82 ILESRAAVKDLINADDVGEI-SLVDN--------ATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAF 140 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i-~~t~g--------~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~ 140 (452)
.+.+++.|.+.+|.+ .++| +++.. ..+.+..++..|.+ ..+++|.+++--..|
T Consensus 77 A~~m~~~L~~~~Gf~-~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~-----~a~pgD~llfYFSGH 138 (350)
T 4f6o_A 77 AHNIFNFLTNGYGYS-SDDIVILTDDQNDLVRVPTRANMIRAMQWLVK-----DAQPNDSLFLHYSGH 138 (350)
T ss_dssp HHHHHHHHHHHSCCC-GGGEEEEETTSSCGGGSCCHHHHHHHHHHHHT-----TCCTTCEEEEEEESC
T ss_pred HHHHHHHHHHhcCCC-ccceeeecccccccccCCCHHHHHHHHHHHHH-----hCCCCCEEEEEEcCC
Confidence 345566666667875 4555 45542 33455555555543 347899998833333
No 282
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=28.37 E-value=2.5e+02 Score=23.90 Aligned_cols=70 Identities=9% Similarity=0.081 Sum_probs=30.1
Q ss_pred CCCCEEEEeCC-cchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 128 HRNDTVLMLHC-AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 128 ~~g~~Vl~~~~-~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
+.|.+|++... .-......... .+..|.++..+.. +..+...+.+.+++..++ ..++.+++.+......+
T Consensus 26 ~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--Dv~d~~~v~~~~~~~~~~----~g~id~lv~nAg~~~~~ 96 (246)
T 3osu_A 26 EEGYNVAVNYAGSKEKAEAVVEE-IKAKGVDSFAIQA--NVADADEVKAMIKEVVSQ----FGSLDVLVNNAGITRDN 96 (246)
T ss_dssp HTTCEEEEEESSCHHHHHHHHHH-HHHTTSCEEEEEC--CTTCHHHHHHHHHHHHHH----HSCCCEEEECCCCCCCC
T ss_pred HCCCEEEEEeCCCHHHHHHHHHH-HHhcCCcEEEEEc--cCCCHHHHHHHHHHHHHH----cCCCCEEEECCCCCCCC
Confidence 56777765422 22222222222 2344666666644 333333222222222222 24567777666544333
No 283
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=28.04 E-value=2.3e+02 Score=24.37 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|......+...+...|..+...... .+...-.+.++..+ ..+++.+++.... . .......+.+++.
T Consensus 16 ~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~l~------~~~vdgiIi~~~~-~----~~~~~~~~~~~~~ 81 (271)
T 2dri_A 16 FVSLKDGAQKEADKLGYNLVVLDSQ---NNPAKELANVQDLT------VRGTKILLINPTD-S----DAVGNAVKMANQA 81 (271)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHT------TTTEEEEEECCSS-T----TTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcEEEEeCCC---CCHHHHHHHHHHHH------HcCCCEEEEeCCC-h----HHHHHHHHHHHHC
Confidence 4445566666677789888776421 12111144455555 4678888775322 1 1223344556677
Q ss_pred CCCEEEEec
Q 012991 220 GVDQVFVDA 228 (452)
Q Consensus 220 ~~~~~ivD~ 228 (452)
++|.+++|.
T Consensus 82 ~iPvV~i~~ 90 (271)
T 2dri_A 82 NIPVITLDR 90 (271)
T ss_dssp TCCEEEESS
T ss_pred CCcEEEecC
Confidence 886667774
No 284
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=28.02 E-value=4e+02 Score=25.38 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=21.0
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHH
Q 012991 415 YARISHQVYNTLEDYEKFRDAVILLV 440 (452)
Q Consensus 415 ~iRis~~~~~t~~di~~l~~~l~~~~ 440 (452)
.-||+-+..++.+||.++++..+..-
T Consensus 401 ~~ria~gsg~~~~~v~~ll~~~~~~~ 426 (433)
T 3kl4_A 401 MRRIAEGSGLEVEEVRELLEWYNNMN 426 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 35899888899999999988766544
No 285
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=28.01 E-value=2.6e+02 Score=24.17 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=40.4
Q ss_pred CcEEEecChhHHHHHH-HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHH
Q 012991 99 GEISLVDNATTAAAIV-LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~-~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l 177 (452)
..+++.+|++.++-.. +..| .+.|-+|++....-......+.......+.++..+.. +..+...+.+.+
T Consensus 25 ~k~vlITGas~gIG~~~a~~l--------~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Dl~~~~~v~~~~ 94 (269)
T 3gk3_A 25 KRVAFVTGGMGGLGAAISRRL--------HDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAV--DVADFESCERCA 94 (269)
T ss_dssp CCEEEETTTTSHHHHHHHHHH--------HTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEEC--CTTCHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHH--------HHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEe--cCCCHHHHHHHH
Confidence 3556666666554433 3333 3667777665422222222222112334555666544 333333322222
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
++..++ -.++.+++.+......+
T Consensus 95 ~~~~~~----~g~id~li~nAg~~~~~ 117 (269)
T 3gk3_A 95 EKVLAD----FGKVDVLINNAGITRDA 117 (269)
T ss_dssp HHHHHH----HSCCSEEEECCCCCCCB
T ss_pred HHHHHH----cCCCCEEEECCCcCCCc
Confidence 222222 14567777766544333
No 286
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=27.32 E-value=2.1e+02 Score=25.36 Aligned_cols=71 Identities=7% Similarity=0.057 Sum_probs=33.3
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
+.|-+|++..-.-.........+ ...+.++..+.. +..+...+.+.+++..++ ..++.+++.+......+.
T Consensus 53 ~~G~~V~~~~r~~~~~~~~~~~l-~~~~~~~~~~~~--Dv~d~~~v~~~~~~~~~~----~g~id~lvnnAg~~~~~~ 123 (301)
T 3tjr_A 53 RRGARLVLSDVDQPALEQAVNGL-RGQGFDAHGVVC--DVRHLDEMVRLADEAFRL----LGGVDVVFSNAGIVVAGP 123 (301)
T ss_dssp HTTCEEEEEESCHHHHHHHHHHH-HHTTCCEEEEEC--CTTCHHHHHHHHHHHHHH----HSSCSEEEECCCCCCCBC
T ss_pred HCCCEEEEEECCHHHHHHHHHHH-HhcCCceEEEEc--cCCCHHHHHHHHHHHHHh----CCCCCEEEECCCcCCCCC
Confidence 56667766544333332333332 334666666654 333433332233333222 246777777765544443
No 287
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=26.94 E-value=2.9e+02 Score=23.37 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=32.2
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
+.|.+|++..-.-......... .+..+.++..+.. +..+...+.+.+++..++ ..++..++.+......+.
T Consensus 27 ~~G~~v~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~~----~~~id~li~~Ag~~~~~~ 97 (247)
T 3lyl_A 27 SKGATVVGTATSQASAEKFENS-MKEKGFKARGLVL--NISDIESIQNFFAEIKAE----NLAIDILVNNAGITRDNL 97 (247)
T ss_dssp HTTCEEEEEESSHHHHHHHHHH-HHHTTCCEEEEEC--CTTCHHHHHHHHHHHHHT----TCCCSEEEECCCCCCCCC
T ss_pred HCCCEEEEEeCCHHHHHHHHHH-HHhcCCceEEEEe--cCCCHHHHHHHHHHHHHH----cCCCCEEEECCCCCCCCc
Confidence 5566776654333222222222 2344666666654 233332222222222222 346777777765544443
No 288
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=26.92 E-value=1.2e+02 Score=26.34 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcC
Q 012991 141 QAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEG 220 (452)
Q Consensus 141 ~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~ 220 (452)
......+...++..|.++...... .+.....+.++..+ ..+++.|++.... ........+.+++.+
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~------~~~vdgiIi~~~~-----~~~~~~~~~~~~~~~ 86 (291)
T 3l49_A 21 LKAYQAQIAEIERLGGTAIALDAG---RNDQTQVSQIQTLI------AQKPDAIIEQLGN-----LDVLNPWLQKINDAG 86 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHH------HHCCSEEEEESSC-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCC---CCHHHHHHHHHHHH------HcCCCEEEEeCCC-----hhhhHHHHHHHHHCC
Confidence 345566777788889999888531 12222245555555 3467777765322 112445566777789
Q ss_pred CCEEEEec
Q 012991 221 VDQVFVDA 228 (452)
Q Consensus 221 ~~~~ivD~ 228 (452)
++.+++|.
T Consensus 87 iPvV~~~~ 94 (291)
T 3l49_A 87 IPLFTVDT 94 (291)
T ss_dssp CCEEEESC
T ss_pred CcEEEecC
Confidence 86666774
No 289
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=26.85 E-value=1.8e+02 Score=26.27 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=42.7
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCC-ChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccc
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLA-SEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVI 207 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~ 207 (452)
++..+++..+.|.- +++++|++...+.-..+.. ....-+.+|.+.++ ..++++|+++...+
T Consensus 189 ~~~~~v~~H~af~Y-------fa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik-----~~~v~~If~e~~~~------ 250 (312)
T 2o1e_A 189 EKKEFITQHTAFGY-------LAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAK-----EHNVKVIYFEEIAS------ 250 (312)
T ss_dssp SCCEEEESSCTTHH-------HHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTT-----SSCCCEEECSSCCC------
T ss_pred CCCEEEEECCchHH-------HHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHH-----HcCCCEEEEeCCCC------
Confidence 46678887666543 3677899877652111101 11111455555554 45777777764432
Q ss_pred cHHHHHHHHHHcCCCEE
Q 012991 208 PVRKLVKICRDEGVDQV 224 (452)
Q Consensus 208 ~l~~i~~l~~~~~~~~~ 224 (452)
-+-+..++++.|+ .+
T Consensus 251 -~~~~~~ia~e~g~-~v 265 (312)
T 2o1e_A 251 -SKVADTLASEIGA-KT 265 (312)
T ss_dssp -HHHHHHHHHHTCC-EE
T ss_pred -hHHHHHHHHHhCC-cE
Confidence 2445567889998 44
No 290
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=26.62 E-value=3.4e+02 Score=24.19 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=44.1
Q ss_pred CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHH
Q 012991 138 CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR 217 (452)
Q Consensus 138 ~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~ 217 (452)
+-|.....++...+...|..+...... .+.....+.++..+ ..+++.|++...... +.+.+.++
T Consensus 75 ~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~------~~~vdGiIi~~~~~~-------~~~~~~l~ 138 (339)
T 3h5o_A 75 TVFLETLTGIETVLDAAGYQMLIGNSH---YDAGQELQLLRAYL------QHRPDGVLITGLSHA-------EPFERILS 138 (339)
T ss_dssp CTTHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHH------TTCCSEEEEECSCCC-------TTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHH------cCCCCEEEEeCCCCC-------HHHHHHHh
Confidence 445666777777788889998877431 12222244455555 467777766543221 13456667
Q ss_pred HcCCCEEEEec
Q 012991 218 DEGVDQVFVDA 228 (452)
Q Consensus 218 ~~~~~~~ivD~ 228 (452)
+.+++.+++|.
T Consensus 139 ~~~iPvV~~~~ 149 (339)
T 3h5o_A 139 QHALPVVYMMD 149 (339)
T ss_dssp HTTCCEEEEES
T ss_pred cCCCCEEEEee
Confidence 77886566664
No 291
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=26.38 E-value=2.5e+02 Score=25.74 Aligned_cols=86 Identities=15% Similarity=0.253 Sum_probs=44.5
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCcE---EEEEeCCCCCCChHHH-HHHHHHH--HhccccCCCceEEEEEeccCCC
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGS---VVEVQLPFPLASEEEI-INEFKKG--IEKGKKDGKMIRLAIIDHITSM 202 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~---v~~~~~~~~~~~~~~~-~~~l~~~--i~~~~~~~~~~~lv~~~~~~n~ 202 (452)
+|..++..+.++.-... .+++.|.. +.... + ++.... .+.++.. ++ ..++++|++.+.++.
T Consensus 57 ~g~~vlyId~E~s~~~~----ra~~lGvd~d~llv~~---~-~~~E~~~l~i~~~l~~i~-----~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 57 PDAVCLFYDSEFGITPA----YLRSMGVDPERVIHTP---V-QSLEQLRIDMVNQLDAIE-----RGEKVVVFIDSLGNL 123 (333)
T ss_dssp TTCEEEEEESSCCCCHH----HHHHTTCCGGGEEEEE---C-SBHHHHHHHHHHHHHTCC-----TTCCEEEEEECSTTC
T ss_pred CCceEEEEeccchhhHH----HHHHhCCCHHHeEEEc---C-CCHHHHHHHHHHHHHHhh-----ccCceEEEEeccccc
Confidence 36677766665543221 15666753 33332 2 233333 3322222 32 467999999999886
Q ss_pred Cc------cc--------cc-------HHHHHHHHHHcCCCEEEEe
Q 012991 203 PC------VV--------IP-------VRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 203 tG------~~--------~~-------l~~i~~l~~~~~~~~~ivD 227 (452)
.. .. .- +..|..+++++|+..+++.
T Consensus 124 ~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 124 ASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp BCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 42 11 11 2345567899998434444
No 292
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=26.37 E-value=3.1e+02 Score=23.54 Aligned_cols=87 Identities=10% Similarity=0.126 Sum_probs=39.9
Q ss_pred CcEEEecChhHHHHHHH-HHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHH
Q 012991 99 GEISLVDNATTAAAIVL-QQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~~-~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l 177 (452)
...++.+|++.++-..+ ..| .+.|.+|++..-.-.........+ ...+.++..+.. +..+...+...+
T Consensus 29 ~k~vlITGas~gIG~~la~~l--------~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~--D~~~~~~v~~~~ 97 (262)
T 3rkr_A 29 GQVAVVTGASRGIGAAIARKL--------GSLGARVVLTARDVEKLRAVEREI-VAAGGEAESHAC--DLSHSDAIAAFA 97 (262)
T ss_dssp TCEEEESSTTSHHHHHHHHHH--------HHTTCEEEEEESCHHHHHHHHHHH-HHTTCEEEEEEC--CTTCHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHH--------HHCCCEEEEEECCHHHHHHHHHHH-HHhCCceeEEEe--cCCCHHHHHHHH
Confidence 45555555554443322 223 356777776544333322333332 334667777754 333433322222
Q ss_pred HHHHhccccCCCceEEEEEeccC
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHIT 200 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~ 200 (452)
++..++ ..++.+|+.+...
T Consensus 98 ~~~~~~----~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 98 TGVLAA----HGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHH----HSCCSEEEECCCC
T ss_pred HHHHHh----cCCCCEEEECCCc
Confidence 222221 2456777776554
No 293
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=26.15 E-value=36 Score=32.96 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=26.9
Q ss_pred cCCCCcccccHHHHHHHHHHcCCCEEEEecc
Q 012991 199 ITSMPCVVIPVRKLVKICRDEGVDQVFVDAA 229 (452)
Q Consensus 199 ~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a 229 (452)
+.+..|+..+++++++-||+.|+ -||+|.+
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~Gi-~VilD~V 98 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNVGV-RIYVDAV 98 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred eCCCCCCHHHHHHHHHHHHHCCC-EEEEEEc
Confidence 45567999999999999999999 8999976
No 294
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=25.94 E-value=3.7e+02 Score=24.50 Aligned_cols=77 Identities=6% Similarity=0.077 Sum_probs=49.2
Q ss_pred CCCCCCEEEEeCCcchh-------HHHHHHHHHHhcCcEEEEEeCCCCCC----ChHHH-HHHHHHHHhccccCCCceEE
Q 012991 126 RFHRNDTVLMLHCAFQA-------VKKSIQAYVTRAGGSVVEVQLPFPLA----SEEEI-INEFKKGIEKGKKDGKMIRL 193 (452)
Q Consensus 126 ~~~~g~~Vl~~~~~~~s-------~~~~~~~~a~~~g~~v~~~~~~~~~~----~~~~~-~~~l~~~i~~~~~~~~~~~l 193 (452)
.+++||+|-+..|+... ...+...+ +..|.+++.-+...... ....- .++|.+++. ++.+++
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L-~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~-----Dp~i~a 81 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRL-TELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFR-----DPNVKA 81 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHH-HHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHH-----CTTEEE
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHH-HhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhh-----CCCCCE
Confidence 57999998887775432 23444444 66799998764321111 11223 788888886 678999
Q ss_pred EEEeccCCCCccccc
Q 012991 194 AIIDHITSMPCVVIP 208 (452)
Q Consensus 194 v~~~~~~n~tG~~~~ 208 (452)
|++.-...-+-.+.|
T Consensus 82 I~~~rGG~g~~rlL~ 96 (331)
T 4e5s_A 82 ILTTLGGYNSNGLLK 96 (331)
T ss_dssp EEESCCCSCGGGGGG
T ss_pred EEEccccccHHHHHh
Confidence 998877765455544
No 295
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.55 E-value=2.4e+02 Score=24.71 Aligned_cols=73 Identities=11% Similarity=-0.047 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD 218 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~ 218 (452)
|......+...+...|..+.... .+.+... .+.++..+ ..+++.|++...... ++..+.+++
T Consensus 42 ~~~~~~gi~~~a~~~g~~~~~~~----~~~~~~~~~~~~~~l~------~~~vdgiIi~~~~~~-------~~~~~~l~~ 104 (305)
T 3huu_A 42 NSDVLNGINQACNVRGYSTRMTV----SENSGDLYHEVKTMIQ------SKSVDGFILLYSLKD-------DPIEHLLNE 104 (305)
T ss_dssp HHHHHHHHHHHHHHHTCEEEECC----CSSHHHHHHHHHHHHH------TTCCSEEEESSCBTT-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEe----CCCChHHHHHHHHHHH------hCCCCEEEEeCCcCC-------cHHHHHHHH
Confidence 34455666666788899888763 2333222 33333333 467777777543321 144566677
Q ss_pred cCCCEEEEecc
Q 012991 219 EGVDQVFVDAA 229 (452)
Q Consensus 219 ~~~~~~ivD~a 229 (452)
.+++.|++|..
T Consensus 105 ~~iPvV~i~~~ 115 (305)
T 3huu_A 105 FKVPYLIVGKS 115 (305)
T ss_dssp TTCCEEEESCC
T ss_pred cCCCEEEECCC
Confidence 78866677753
No 296
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=25.41 E-value=2.9e+02 Score=23.71 Aligned_cols=70 Identities=10% Similarity=0.101 Sum_probs=31.3
Q ss_pred CCCCEEEEe-CCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 128 HRNDTVLML-HCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 128 ~~g~~Vl~~-~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
+.|.+|++. .-.-......... .+..|.++..+.. +..+...+.+.+++..++ ..++.+++.+......+
T Consensus 26 ~~G~~vv~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~--Dv~~~~~v~~~~~~~~~~----~g~id~lv~nAg~~~~~ 96 (258)
T 3oid_A 26 ENGYNIVINYARSKKAALETAEE-IEKLGVKVLVVKA--NVGQPAKIKEMFQQIDET----FGRLDVFVNNAASGVLR 96 (258)
T ss_dssp HTTCEEEEEESSCHHHHHHHHHH-HHTTTCCEEEEEC--CTTCHHHHHHHHHHHHHH----HSCCCEEEECCCCCCCS
T ss_pred HCCCEEEEEcCCCHHHHHHHHHH-HHhcCCcEEEEEc--CCCCHHHHHHHHHHHHHH----cCCCCEEEECCCCCCCC
Confidence 567776664 3332222222222 2344666666654 333333322222222222 24567777766544333
No 297
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=25.04 E-value=1.8e+02 Score=25.19 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=41.7
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|.....++...++..|..+...... .+...-.+.++..+ ..+++.|++.... + ....+..+.+++.
T Consensus 16 ~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~l~------~~~vdgiIi~~~~-~----~~~~~~~~~~~~~ 81 (283)
T 2ioy_A 16 FVTLKNGAEEKAKELGYKIIVEDSQ---NDSSKELSNVEDLI------QQKVDVLLINPVD-S----DAVVTAIKEANSK 81 (283)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHH------HTTCSEEEECCSS-T----TTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCC---CCHHHHHHHHHHHH------HcCCCEEEEeCCc-h----hhhHHHHHHHHHC
Confidence 4455566666677789888776421 12211145566656 3567777764322 1 1233344556777
Q ss_pred CCCEEEEec
Q 012991 220 GVDQVFVDA 228 (452)
Q Consensus 220 ~~~~~ivD~ 228 (452)
+++.+++|.
T Consensus 82 ~iPvV~~~~ 90 (283)
T 2ioy_A 82 NIPVITIDR 90 (283)
T ss_dssp TCCEEEESS
T ss_pred CCeEEEecC
Confidence 886556664
No 298
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.86 E-value=1.8e+02 Score=26.23 Aligned_cols=77 Identities=6% Similarity=0.144 Sum_probs=46.8
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|......+...++..|.++...... .+...-.+.++..+.+ ..+++.|++.. .. .....+.+.+++.
T Consensus 19 ~~~~~~g~~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~~i~~----~~~vDgiIi~~-~~-----~~~~~~~~~~~~~ 85 (350)
T 3h75_A 19 WVSYSQFMQAAARDLGLDLRILYAE---RDPQNTLQQARELFQG----RDKPDYLMLVN-EQ-----YVAPQILRLSQGS 85 (350)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHHHS----SSCCSEEEEEC-CS-----SHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECC---CCHHHHHHHHHHHHhc----CCCCCEEEEeC-ch-----hhHHHHHHHHHhC
Confidence 4455666777678889999887431 1222225667777741 14777777753 21 1345666777788
Q ss_pred CCCEEEEecc
Q 012991 220 GVDQVFVDAA 229 (452)
Q Consensus 220 ~~~~~ivD~a 229 (452)
+++.+++|..
T Consensus 86 giPvV~~~~~ 95 (350)
T 3h75_A 86 GIKLFIVNSP 95 (350)
T ss_dssp CCEEEEEESC
T ss_pred CCcEEEEcCC
Confidence 9965666743
No 299
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=24.68 E-value=3.2e+02 Score=23.51 Aligned_cols=72 Identities=8% Similarity=-0.005 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD 218 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~ 218 (452)
|.....++...++..|.++..... ..+..- .+.++..+ ..++..|++..... +-+.+ +.+++
T Consensus 36 ~~~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~------~~~vdgii~~~~~~------~~~~~-~~l~~ 98 (296)
T 3brq_A 36 FSELLFHAARMAEEKGRQLLLADG----KHSAEEERQAIQYLL------DLRCDAIMIYPRFL------SVDEI-DDIID 98 (296)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECC----TTSHHHHHHHHHHHH------HTTCSEEEEECSSS------CHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHH------hcCCCEEEEecCCC------ChHHH-HHHHh
Confidence 344556676667888998887732 222222 44555555 34676776654321 11233 44556
Q ss_pred -cCCCEEEEec
Q 012991 219 -EGVDQVFVDA 228 (452)
Q Consensus 219 -~~~~~~ivD~ 228 (452)
.+++.+++|.
T Consensus 99 ~~~iPvV~~~~ 109 (296)
T 3brq_A 99 AHSQPIMVLNR 109 (296)
T ss_dssp TCSSCEEEESC
T ss_pred cCCCCEEEEcc
Confidence 6886566664
No 300
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=24.56 E-value=2.6e+02 Score=24.61 Aligned_cols=66 Identities=9% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEecc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHI 199 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~ 199 (452)
+.|.+|++..-.-...........+..|.++..+.. +..+...+.+.+++..++ ..++.+++.+..
T Consensus 69 ~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--Dv~d~~~v~~~~~~~~~~----~g~iD~lvnnAg 134 (291)
T 3ijr_A 69 KEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPG--DLSDEQHCKDIVQETVRQ----LGSLNILVNNVA 134 (291)
T ss_dssp HTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEES--CTTSHHHHHHHHHHHHHH----HSSCCEEEECCC
T ss_pred HCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEEC--CCCCHHHHHHHHHHHHHH----cCCCCEEEECCC
Confidence 567777665333222223333323455667777754 333333322223332222 245677766544
No 301
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=24.21 E-value=2e+02 Score=24.20 Aligned_cols=72 Identities=7% Similarity=-0.026 Sum_probs=33.0
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
+.|.+|++..-...........+....+.++..+.. +..+. +.+++.+++......++.+++.+......+.
T Consensus 24 ~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~----~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~ 95 (235)
T 3l77_A 24 RDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHL--DVSKA----ESVEEFSKKVLERFGDVDVVVANAGLGYFKR 95 (235)
T ss_dssp HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEEC--CTTCH----HHHHHHCC-HHHHHSSCSEEEECCCCCCCCC
T ss_pred HCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEe--ccCCH----HHHHHHHHHHHHhcCCCCEEEECCccccccC
Confidence 566677665443333333333333344667777654 23332 3333332211100245777777665544443
No 302
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=24.01 E-value=3.5e+02 Score=23.29 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=42.2
Q ss_pred CcEEEecChhHHHHH-HHHHhhcccccCCCCCCCEEEEeCC-c-ch-hHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHH
Q 012991 99 GEISLVDNATTAAAI-VLQQIGRGFTEGRFHRNDTVLMLHC-A-FQ-AVKKSIQAYVTRAGGSVVEVQLPFPLASEEEII 174 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~-~~~~l~~~~~~~~~~~g~~Vl~~~~-~-~~-s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 174 (452)
..+++.+|++.++-. ++..| .+.|.+|++..- . -. ........ ....|.++..+.. +..+...+.
T Consensus 11 ~k~vlVTGas~GIG~aia~~l--------a~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~--Dv~d~~~v~ 79 (262)
T 3ksu_A 11 NKVIVIAGGIKNLGALTAKTF--------ALESVNLVLHYHQAKDSDTANKLKDE-LEDQGAKVALYQS--DLSNEEEVA 79 (262)
T ss_dssp TCEEEEETCSSHHHHHHHHHH--------TTSSCEEEEEESCGGGHHHHHHHHHH-HHTTTCEEEEEEC--CCCSHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHH--------HHCCCEEEEEecCccCHHHHHHHHHH-HHhcCCcEEEEEC--CCCCHHHHH
Confidence 344555555544433 33333 466777776422 1 11 11122222 2334677777755 333433332
Q ss_pred HHHHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 175 NEFKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 175 ~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
..+++..++ ..++.+++.+......+.
T Consensus 80 ~~~~~~~~~----~g~iD~lvnnAg~~~~~~ 106 (262)
T 3ksu_A 80 KLFDFAEKE----FGKVDIAINTVGKVLKKP 106 (262)
T ss_dssp HHHHHHHHH----HCSEEEEEECCCCCCSSC
T ss_pred HHHHHHHHH----cCCCCEEEECCCCCCCCC
Confidence 222222222 246788877766544443
No 303
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=23.84 E-value=2.6e+02 Score=25.23 Aligned_cols=73 Identities=10% Similarity=0.004 Sum_probs=34.0
Q ss_pred CCCCCEEEEeCC----cchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCC
Q 012991 127 FHRNDTVLMLHC----AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSM 202 (452)
Q Consensus 127 ~~~g~~Vl~~~~----~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~ 202 (452)
.+.|.+|+...- .-......+.......+.++..+.. +..+...+.+.+++..++ ..++.+++.+.....
T Consensus 26 ~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~--Dvtd~~~v~~~~~~~~~~----~g~iD~lVnnAG~~~ 99 (324)
T 3u9l_A 26 AGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLEL--DVQSQVSVDRAIDQIIGE----DGRIDVLIHNAGHMV 99 (324)
T ss_dssp HHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEEC--CTTCHHHHHHHHHHHHHH----HSCCSEEEECCCCCB
T ss_pred HHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEe--ecCCHHHHHHHHHHHHHH----cCCCCEEEECCCcCC
Confidence 366777775321 1111122222223344666666654 334443333333333332 246777777766544
Q ss_pred Ccc
Q 012991 203 PCV 205 (452)
Q Consensus 203 tG~ 205 (452)
.|.
T Consensus 100 ~~~ 102 (324)
T 3u9l_A 100 FGP 102 (324)
T ss_dssp CSC
T ss_pred CCC
Confidence 443
No 304
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=23.67 E-value=2.8e+02 Score=23.94 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=52.5
Q ss_pred cEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEe---CCc-------chhHHHHHHHHHHhcCcEEEEEeCCCCCCC
Q 012991 100 EISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLML---HCA-------FQAVKKSIQAYVTRAGGSVVEVQLPFPLAS 169 (452)
Q Consensus 100 ~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~---~~~-------~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~ 169 (452)
.++..|||.-+..++..+. +.|-+|+.. .+. |......+..+|+..|++...++++.+.
T Consensus 7 vvvl~SGGkDSs~al~~l~---------~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~-- 75 (237)
T 3rjz_A 7 VAVLYSGGKDSNYALYWAI---------KNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEK-- 75 (237)
T ss_dssp EEEECCSSHHHHHHHHHHH---------HTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------
T ss_pred EEEEecCcHHHHHHHHHHH---------HcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCc--
Confidence 4567788876655555543 345444321 111 1111234555688889999888764221
Q ss_pred hHHHHHHHHHHHhccccCCCceEEEEEeccCCCCccccc---HHHHHHHHHHcCC
Q 012991 170 EEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP---VRKLVKICRDEGV 221 (452)
Q Consensus 170 ~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~l~~~~~~ 221 (452)
+...+++.+++++. ....++ +|.+.. -.++-..|.+.|+
T Consensus 76 -~~e~e~l~~~l~~~-----~i~~vv-------~Gdi~s~yqr~r~e~vc~~~gl 117 (237)
T 3rjz_A 76 -EKEVEDLKRVLSGL-----KIQGIV-------AGALASKYQRKRIEKVAKELGL 117 (237)
T ss_dssp ---CHHHHHHHHTTS-----CCSEEE-------CC---CCSHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHHhc-----CCcEEE-------ECCcchHHHHHHHHHHHHHcCC
Confidence 11167788888531 333443 355542 4578889999998
No 305
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=23.58 E-value=1.8e+02 Score=24.90 Aligned_cols=74 Identities=8% Similarity=0.085 Sum_probs=42.5
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|......+...++..|.++...... .+.....+.++..+ ..+++.|++..... . . .+..+.+++.
T Consensus 17 ~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~------~~~vdgiIi~~~~~-~----~-~~~~~~~~~~ 81 (272)
T 3o74_A 17 YARIAKQLEQGARARGYQLLIASSD---DQPDSERQLQQLFR------ARRCDALFVASCLP-P----E-DDSYRELQDK 81 (272)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHH------HTTCSEEEECCCCC-S----S-CCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHH------HcCCCEEEEecCcc-c----c-HHHHHHHHHc
Confidence 4445666667788889999888532 12111244455555 35677777754331 1 1 2344556677
Q ss_pred CCCEEEEec
Q 012991 220 GVDQVFVDA 228 (452)
Q Consensus 220 ~~~~~ivD~ 228 (452)
+++.+++|.
T Consensus 82 ~iPvV~~~~ 90 (272)
T 3o74_A 82 GLPVIAIDR 90 (272)
T ss_dssp TCCEEEESS
T ss_pred CCCEEEEcc
Confidence 886666774
No 306
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=23.49 E-value=1.8e+02 Score=25.39 Aligned_cols=75 Identities=11% Similarity=0.014 Sum_probs=40.5
Q ss_pred CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHH
Q 012991 138 CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR 217 (452)
Q Consensus 138 ~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~ 217 (452)
+-|......+...++..|..+...... .+......+.+.+. ..+++.|++..... + ++..+.++
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~----~~~~~~~~~~~~l~-----~~~vdgiIi~~~~~------~-~~~~~~l~ 86 (288)
T 3gv0_A 23 GFTSQMVFGITEVLSTTQYHLVVTPHI----HAKDSMVPIRYILE-----TGSADGVIISKIEP------N-DPRVRFMT 86 (288)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEEECCBS----SGGGTTHHHHHHHH-----HTCCSEEEEESCCT------T-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCC----cchhHHHHHHHHHH-----cCCccEEEEecCCC------C-cHHHHHHh
Confidence 334555666766677789888876432 11111233333343 35666766653221 1 13445667
Q ss_pred HcCCCEEEEec
Q 012991 218 DEGVDQVFVDA 228 (452)
Q Consensus 218 ~~~~~~~ivD~ 228 (452)
+.+++.|++|.
T Consensus 87 ~~~iPvV~i~~ 97 (288)
T 3gv0_A 87 ERNMPFVTHGR 97 (288)
T ss_dssp HTTCCEEEESC
T ss_pred hCCCCEEEECC
Confidence 78886566664
No 307
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=23.31 E-value=3.9e+02 Score=23.68 Aligned_cols=79 Identities=6% Similarity=0.113 Sum_probs=45.3
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCccccc
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP 208 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~ 208 (452)
++..+++..+.|.-. ++++|++...+... .....-.-+.++.+.++ ..++++|+++...++
T Consensus 189 ~~~~~v~~H~af~Yf-------~~~yGl~~~~~~~~-~~eps~~~l~~l~~~ik-----~~~v~~If~e~~~~~------ 249 (291)
T 1pq4_A 189 PQRKFIVFHPSWAYF-------ARDYNLVQIPIEVE-GQEPSAQELKQLIDTAK-----ENNLTMVFGETQFST------ 249 (291)
T ss_dssp SCCEEEESSCCCHHH-------HHHTTCEEEESCBT-TBCCCHHHHHHHHHHHH-----TTTCCEEEEETTSCC------
T ss_pred CCCEEEEECCchHHH-------HHHCCCEEeecccC-CCCCCHHHHHHHHHHHH-----HcCCCEEEEeCCCCh------
Confidence 467788877776433 67789987665311 11111112555666665 467888888754432
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 012991 209 VRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 209 l~~i~~l~~~~~~~~~ivD 227 (452)
+-+..++++.|+..+.+|
T Consensus 250 -~~~~~ia~~~g~~v~~ld 267 (291)
T 1pq4_A 250 -KSSEAIAAEIGAGVELLD 267 (291)
T ss_dssp -HHHHHHHHHHTCEEEEEC
T ss_pred -HHHHHHHHHcCCeEEEEc
Confidence 223346888898333444
No 308
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=23.29 E-value=2.3e+02 Score=24.49 Aligned_cols=14 Identities=7% Similarity=-0.216 Sum_probs=7.9
Q ss_pred CceEEEEEeccCCC
Q 012991 189 KMIRLAIIDHITSM 202 (452)
Q Consensus 189 ~~~~lv~~~~~~n~ 202 (452)
.++.+++.+.....
T Consensus 87 g~id~lvnnAg~~~ 100 (262)
T 3pk0_A 87 GGIDVVCANAGVFP 100 (262)
T ss_dssp SCCSEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 35666766655443
No 309
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=22.97 E-value=2.5e+02 Score=24.88 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=39.9
Q ss_pred CcEEEecChhHHHHHH-HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcC-cEEEEEeCCCCCCChHHHHHH
Q 012991 99 GEISLVDNATTAAAIV-LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAG-GSVVEVQLPFPLASEEEIINE 176 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~-~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~~~ 176 (452)
..+++.+|++.++-.. +..| .+.|-+|++..-.-.........+ ...+ .++..+.. +..+...+.+.
T Consensus 41 ~k~vlVTGas~GIG~aia~~l--------a~~G~~V~~~~r~~~~~~~~~~~l-~~~~~~~~~~~~~--Dv~d~~~v~~~ 109 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVF--------ARAGANVAVAARSPRELSSVTAEL-GELGAGNVIGVRL--DVSDPGSCADA 109 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHH--------HHTTCEEEEEESSGGGGHHHHHHH-TTSSSSCEEEEEC--CTTCHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHH--------HHCCCEEEEEECCHHHHHHHHHHH-HhhCCCcEEEEEE--eCCCHHHHHHH
Confidence 4556666655544332 2333 355666666533322222333332 2223 45555544 33333332222
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCcc
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPCV 205 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG~ 205 (452)
+++..++ -.++.+++.+......+.
T Consensus 110 ~~~~~~~----~g~iD~lvnnAg~~~~~~ 134 (293)
T 3rih_A 110 ARTVVDA----FGALDVVCANAGIFPEAR 134 (293)
T ss_dssp HHHHHHH----HSCCCEEEECCCCCCCCC
T ss_pred HHHHHHH----cCCCCEEEECCCCCCCCC
Confidence 2222222 245667776655444333
No 310
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=22.70 E-value=2.7e+02 Score=24.13 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=42.1
Q ss_pred chhHHHHHHHHHHhc-CcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH
Q 012991 140 FQAVKKSIQAYVTRA-GGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD 218 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~ 218 (452)
|......+...++.. |..+..........+.....+.++..+ ..+++.|++..... .....+.+.+++
T Consensus 24 ~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~------~~~vdgiii~~~~~-----~~~~~~~~~~~~ 92 (304)
T 3gbv_A 24 WTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVI------EEQPDGVMFAPTVP-----QYTKGFTDALNE 92 (304)
T ss_dssp HHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHH------TTCCSEEEECCSSG-----GGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHH------hcCCCEEEECCCCh-----HHHHHHHHHHHH
Confidence 444556666667766 666655432111122222245555555 56787887754321 123455566677
Q ss_pred cCCCEEEEec
Q 012991 219 EGVDQVFVDA 228 (452)
Q Consensus 219 ~~~~~~ivD~ 228 (452)
.+++.+++|.
T Consensus 93 ~~iPvV~~~~ 102 (304)
T 3gbv_A 93 LGIPYIYIDS 102 (304)
T ss_dssp HTCCEEEESS
T ss_pred CCCeEEEEeC
Confidence 7886666774
No 311
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=22.25 E-value=68 Score=30.26 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=21.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEecccccCC
Q 012991 207 IPVRKLVKICRDEGVDQVFVDAAHAMGS 234 (452)
Q Consensus 207 ~~l~~i~~l~~~~~~~~~ivD~a~~~g~ 234 (452)
.++..|..+.+..++ ++++|.+|+.|.
T Consensus 298 ldl~~i~~lk~~~~l-pV~~D~th~~G~ 324 (385)
T 3nvt_A 298 LDISAVPILKKETHL-PVMVDVTHSTGR 324 (385)
T ss_dssp CCTTHHHHHHHHBSS-CEEEEHHHHHCC
T ss_pred cCHHHHHHHHHhcCC-CEEEcCCCCCCc
Confidence 578888777777899 589998887664
No 312
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=22.25 E-value=3.9e+02 Score=24.21 Aligned_cols=76 Identities=7% Similarity=0.005 Sum_probs=44.7
Q ss_pred CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCC-ChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCccccc
Q 012991 130 NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLA-SEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP 208 (452)
Q Consensus 130 g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~ 208 (452)
+..+++.++.|.- +++++|.+...+....+.. ....-+.++.+.++ ..++++|+.+...++
T Consensus 204 ~r~~v~~H~af~Y-------fa~~yGL~~~~~~~~~~~~eps~~~l~~l~~~ik-----~~~v~~If~e~~~~~------ 265 (321)
T 1xvl_A 204 QRFLVSCEGAFSY-------LARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVK-----TNNVPTIFCESTVSD------ 265 (321)
T ss_dssp GCEEEEEESTTHH-------HHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHH-----TTTCSEEEEETTSCS------
T ss_pred CCEEEEECchHHH-------HHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHH-----HcCCcEEEEeCCCCh------
Confidence 4578887666643 3677899987764211111 11112566666665 467888888755432
Q ss_pred HHHHHHHHHHcCCCEEE
Q 012991 209 VRKLVKICRDEGVDQVF 225 (452)
Q Consensus 209 l~~i~~l~~~~~~~~~i 225 (452)
+-+..++++.|+ .+.
T Consensus 266 -~~~~~iA~e~g~-~v~ 280 (321)
T 1xvl_A 266 -KGQKQVAQATGA-RFG 280 (321)
T ss_dssp -HHHHHHHTTTCC-EEE
T ss_pred -HHHHHHHHhcCC-cee
Confidence 334456888898 564
No 313
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=22.19 E-value=1.2e+02 Score=26.25 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=29.4
Q ss_pred CCceEEEEEeccCCC-----------CcccccHHHHHHHHHHcCCCEEEE
Q 012991 188 GKMIRLAIIDHITSM-----------PCVVIPVRKLVKICRDEGVDQVFV 226 (452)
Q Consensus 188 ~~~~~lv~~~~~~n~-----------tG~~~~l~~i~~l~~~~~~~~~iv 226 (452)
+-.|..|+++-. +. .|.....+++.+++++||+ .++.
T Consensus 165 Gl~PagVicEi~-~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L-~iit 212 (233)
T 1k4i_A 165 GKRPVAVISEIV-DDGQEVEGRAVRAAPGMLRGDECVAFARRWGL-KVCT 212 (233)
T ss_dssp TCCSBEEEEEBE-ECCEECTTSSCEESCEECCHHHHHHHHHHTTC-EEEE
T ss_pred CCCceEEEEEeC-CCcccccccccCCCCCcCCHHHHHHHHHHcCC-cEEE
Confidence 567777777644 45 6999999999999999999 5554
No 314
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=22.19 E-value=3.9e+02 Score=23.22 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=33.4
Q ss_pred CCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 128 HRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 128 ~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
+.|.+|++..-.-.........+ ...|.++..+.. +..+...+.+.+++..++ ..++.+++.+......+.+
T Consensus 46 ~~G~~V~~~~r~~~~~~~~~~~l-~~~~~~~~~~~~--Dv~d~~~v~~~~~~~~~~----~g~id~lv~nAg~~~~~~~ 117 (279)
T 3sju_A 46 ARGIAVYGCARDAKNVSAAVDGL-RAAGHDVDGSSC--DVTSTDEVHAAVAAAVER----FGPIGILVNSAGRNGGGET 117 (279)
T ss_dssp HTTCEEEEEESCHHHHHHHHHHH-HTTTCCEEEEEC--CTTCHHHHHHHHHHHHHH----HCSCCEEEECCCCCCCSCG
T ss_pred HCCCEEEEEeCCHHHHHHHHHHH-HhcCCcEEEEEC--CCCCHHHHHHHHHHHHHH----cCCCcEEEECCCCCCCCCh
Confidence 56777776543322222333332 334666666654 333433332233333322 2467777776655444433
No 315
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=22.16 E-value=2e+02 Score=24.62 Aligned_cols=73 Identities=8% Similarity=-0.049 Sum_probs=40.1
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|.....++...++..|.++...... ++...-.+.++..+ ..+.+.|++..... + +++.+.+++.
T Consensus 18 ~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~------~~~vdgii~~~~~~------~-~~~~~~l~~~ 81 (275)
T 3d8u_A 18 CAHFLPSFQQALNKAGYQLLLGYSD---YSIEQEEKLLSTFL------ESRPAGVVLFGSEH------S-QRTHQLLEAS 81 (275)
T ss_dssp HHHHHHHHHHHHHHTSCEECCEECT---TCHHHHHHHHHHHH------TSCCCCEEEESSCC------C-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHHHHHHH------hcCCCEEEEeCCCC------C-HHHHHHHHhC
Confidence 4445566666678889888766431 12111134455555 45677666654321 1 2344555667
Q ss_pred CCCEEEEec
Q 012991 220 GVDQVFVDA 228 (452)
Q Consensus 220 ~~~~~ivD~ 228 (452)
+++.+++|.
T Consensus 82 ~iPvV~~~~ 90 (275)
T 3d8u_A 82 NTPVLEIAE 90 (275)
T ss_dssp TCCEEEESS
T ss_pred CCCEEEEee
Confidence 886566774
No 316
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=21.74 E-value=2.5e+02 Score=24.38 Aligned_cols=91 Identities=9% Similarity=0.027 Sum_probs=39.5
Q ss_pred CcEEEecChhHHHHHH-HHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHH
Q 012991 99 GEISLVDNATTAAAIV-LQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEF 177 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~-~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l 177 (452)
..+++.+|++.++-.. +..| .+.|-+|++..-.-......... ....+.++..+.. +..+...+.+.+
T Consensus 28 ~k~~lVTGas~GIG~aia~~l--------a~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~--Dv~d~~~v~~~~ 96 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALEL--------ARRGAMVIGTATTEAGAEGIGAA-FKQAGLEGRGAVL--NVNDATAVDALV 96 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHH--------HHTTCEEEEEESSHHHHHHHHHH-HHHHTCCCEEEEC--CTTCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHH--------HHCCCEEEEEeCCHHHHHHHHHH-HHhcCCcEEEEEE--eCCCHHHHHHHH
Confidence 3555555555544332 2333 35566776654332222222222 2333555555543 333333322222
Q ss_pred HHHHhccccCCCceEEEEEeccCCCCc
Q 012991 178 KKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
++..++ -.++.+++.+......+
T Consensus 97 ~~~~~~----~g~iD~lvnnAg~~~~~ 119 (270)
T 3ftp_A 97 ESTLKE----FGALNVLVNNAGITQDQ 119 (270)
T ss_dssp HHHHHH----HSCCCEEEECCCCCCCB
T ss_pred HHHHHH----cCCCCEEEECCCCCCCC
Confidence 222222 24567777666544433
No 317
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=21.64 E-value=3.8e+02 Score=23.23 Aligned_cols=12 Identities=8% Similarity=0.061 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHH
Q 012991 425 TLEDYEKFRDAV 436 (452)
Q Consensus 425 t~~di~~l~~~l 436 (452)
+.+|+-..+-.|
T Consensus 247 ~p~dvA~~v~~L 258 (280)
T 3pgx_A 247 TADEVADVVAWL 258 (280)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 677766665554
No 318
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=21.40 E-value=82 Score=28.16 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=44.2
Q ss_pred CEEEEeCCcchhHHHHHHHHHHhcCcEEEEEe-CCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccH
Q 012991 131 DTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQ-LPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV 209 (452)
Q Consensus 131 ~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~-~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l 209 (452)
..+++..+.|.- +++++|.+...+. +....+..-.-+.++.+.++ ..++++|+++...++ -..
T Consensus 164 ~~~vt~H~af~Y-------~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik-----~~~v~~if~e~~~~~----~~~ 227 (282)
T 3mfq_A 164 RYLVTPHDAFNY-------FAASYDFTLYAPQGVSTDSEVANSDMIETVNLII-----DHNIKAIFTESTTNP----ERM 227 (282)
T ss_dssp CEEECSSSCCHH-------HHHHTTCEEECSSCSSSCSCCCHHHHHHHHHHHH-----HHTCCEEECBTTSCT----HHH
T ss_pred cEEEEECchHHH-------HHHHCCCeEecccccCCCCCCCHHHHHHHHHHHH-----HcCCCEEEEeCCCCh----HHH
Confidence 456665666543 3677899876542 10000111112555666665 357778877643321 125
Q ss_pred HHHHHHHHHcCCCEEEEe
Q 012991 210 RKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 210 ~~i~~l~~~~~~~~~ivD 227 (452)
+.|++++++.|+..++++
T Consensus 228 ~~l~~~a~~~g~~v~~l~ 245 (282)
T 3mfq_A 228 KKLQEAVKAKGGQVEVVT 245 (282)
T ss_dssp HHHHHHHHTTSCCCEEET
T ss_pred HHHHHHHHhcCCceEEec
Confidence 678888999997423433
No 319
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=21.38 E-value=3.7e+02 Score=24.50 Aligned_cols=76 Identities=5% Similarity=-0.052 Sum_probs=40.3
Q ss_pred HHHHHHHHhHhCCCCCCcEEEecChhH----------HHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHH
Q 012991 83 LESRAAVKDLINADDVGEISLVDNATT----------AAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVT 152 (452)
Q Consensus 83 ~~~~~~la~~~~~~~~~~i~~t~g~t~----------a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~ 152 (452)
.+..+.+.++.+-+ +.-|++|||+|. ++...+.++...+ .+.++|.++..-|-|+......-..+-
T Consensus 25 ~~~~~~~~~w~~d~-~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~h~~gl~~~~~~l 100 (358)
T 4gs5_A 25 AQAYDFMEKWLGGA-REFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL---SLGPGTRALVCLNVGYIAGLMMLVRGM 100 (358)
T ss_dssp HHHHHHHHHHHHTC-SEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT---TCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred cchhhHhhccCCCC-CEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh---CCCCCCEEEEECChHHHHHHHHHHHHH
Confidence 34444555665543 677888998873 2332233332222 357889888876654432222222233
Q ss_pred hcCcEEEEEe
Q 012991 153 RAGGSVVEVQ 162 (452)
Q Consensus 153 ~~g~~v~~~~ 162 (452)
..|..+...+
T Consensus 101 ~~g~~~~~~~ 110 (358)
T 4gs5_A 101 ELDWELTVTE 110 (358)
T ss_dssp HHTCEEEEEC
T ss_pred HhCcEEEecC
Confidence 3477766654
No 320
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=21.23 E-value=2.9e+02 Score=23.65 Aligned_cols=71 Identities=11% Similarity=0.007 Sum_probs=32.5
Q ss_pred CCCCEEEEeC-CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 128 HRNDTVLMLH-CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 128 ~~g~~Vl~~~-~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
+.|.+|++.. ..-.........+.+..+.++..+.. +..+...+.+.+++..++ ..++++++.+......+
T Consensus 44 ~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--Dl~~~~~v~~~~~~~~~~----~g~id~li~nAg~~~~~ 115 (267)
T 3gdg_A 44 EMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKC--QVDSYESCEKLVKDVVAD----FGQIDAFIANAGATADS 115 (267)
T ss_dssp HTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBC--CTTCHHHHHHHHHHHHHH----TSCCSEEEECCCCCCCS
T ss_pred HCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEec--CCCCHHHHHHHHHHHHHH----cCCCCEEEECCCcCCCC
Confidence 5566766643 22222133344434445667766644 233332222222222222 34677777766544333
No 321
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=21.16 E-value=2.3e+02 Score=20.56 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccH----HHHHH-HHHHcCCCEEEEecccc
Q 012991 171 EEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPV----RKLVK-ICRDEGVDQVFVDAAHA 231 (452)
Q Consensus 171 ~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l----~~i~~-l~~~~~~~~~ivD~a~~ 231 (452)
....+.|++.+++ .++..|++-.|-|+.|..-+. .+.++ +.++ ++++.++|+-.+
T Consensus 37 ~~~~~~l~~li~e-----~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DERlT 96 (98)
T 1iv0_A 37 EEDVEALLDFVRR-----EGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHH-----HTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHHH-----cCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCCCC
Confidence 3347888888863 467889998899988887663 23333 3344 776678888543
No 322
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=21.05 E-value=2.7e+02 Score=23.87 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=7.4
Q ss_pred CceEEEEEeccCC
Q 012991 189 KMIRLAIIDHITS 201 (452)
Q Consensus 189 ~~~~lv~~~~~~n 201 (452)
.++.+++.+....
T Consensus 82 g~id~lv~nAg~~ 94 (257)
T 3imf_A 82 GRIDILINNAAGN 94 (257)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4566666665433
No 323
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=20.92 E-value=2.3e+02 Score=24.20 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=45.7
Q ss_pred CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCc-eEEEEEeccCCCCcccccHHHHHHH
Q 012991 138 CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKM-IRLAIIDHITSMPCVVIPVRKLVKI 215 (452)
Q Consensus 138 ~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~-~~lv~~~~~~n~tG~~~~l~~i~~l 215 (452)
+-|......+...++..|.++...... .+.+..- .+.++..+. .+ ++.|++..... ....+..+.
T Consensus 13 ~~~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~~~i~~l~~------~~~vdgii~~~~~~-----~~~~~~~~~ 79 (276)
T 3ksm_A 13 AYWRQVYLGAQKAADEAGVTLLHRSTK--DDGDIAGQIQILSYHLS------QAPPDALILAPNSA-----EDLTPSVAQ 79 (276)
T ss_dssp THHHHHHHHHHHHHHHHTCEEEECCCS--STTCHHHHHHHHHHHHH------HSCCSEEEECCSST-----TTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEECCC--CCCCHHHHHHHHHHHHH------hCCCCEEEEeCCCH-----HHHHHHHHH
Confidence 345556677777788889998877421 1122222 556666663 35 77777754321 123455566
Q ss_pred HHHcCCCEEEEec
Q 012991 216 CRDEGVDQVFVDA 228 (452)
Q Consensus 216 ~~~~~~~~~ivD~ 228 (452)
+++.+++.+++|.
T Consensus 80 ~~~~~ipvV~~~~ 92 (276)
T 3ksm_A 80 YRARNIPVLVVDS 92 (276)
T ss_dssp HHHTTCCEEEESS
T ss_pred HHHCCCcEEEEec
Confidence 7777886666774
No 324
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=20.85 E-value=2e+02 Score=24.46 Aligned_cols=114 Identities=14% Similarity=0.143 Sum_probs=63.5
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEE--e-CCc-chhHHHHHHHHHHhcCcE
Q 012991 82 ILESRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLM--L-HCA-FQAVKKSIQAYVTRAGGS 157 (452)
Q Consensus 82 ~~~~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~--~-~~~-~~s~~~~~~~~a~~~g~~ 157 (452)
.+.+.+.+.+.+|.+....+++..-|..+-.+ +..+. .-..+-+++- + ++. -.+ . +...|.+
T Consensus 68 V~~L~~~i~~~Lg~~~~~~V~IvGaG~lG~aL-a~~~~------~~~~g~~iVg~~D~dp~~kiG--~-----~~i~Gvp 133 (212)
T 3keo_A 68 VKKLMNFFAEILNDHSTTNVMLVGCGNIGRAL-LHYRF------HDRNKMQISMAFDLDSNDLVG--K-----TTEDGIP 133 (212)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECCSHHHHHH-TTCCC------CTTSSEEEEEEEECTTSTTTT--C-----BCTTCCB
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECcCHHHHHH-HHhhh------cccCCeEEEEEEeCCchhccC--c-----eeECCeE
Confidence 67888889999998744567766666555332 22110 1122323332 2 333 111 0 0012444
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEecccccCC
Q 012991 158 VVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDAAHAMGS 234 (452)
Q Consensus 158 v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a~~~g~ 234 (452)
+.. .+++++.++ ..++..++++-|+. ..+++++.|.+.|+ --|..-+...-.
T Consensus 134 V~~-------------~~dL~~~v~-----~~~Id~vIIAvPs~------~aq~v~d~lv~~GI-k~I~nFap~~l~ 185 (212)
T 3keo_A 134 VYG-------------ISTINDHLI-----DSDIETAILTVPST------EAQEVADILVKAGI-KGILSFSPVHLT 185 (212)
T ss_dssp EEE-------------GGGHHHHC------CCSCCEEEECSCGG------GHHHHHHHHHHHTC-CEEEECSSSCCC
T ss_pred EeC-------------HHHHHHHHH-----HcCCCEEEEecCch------hHHHHHHHHHHcCC-CEEEEcCCcccC
Confidence 432 256777775 35677888876653 35789999999999 678776654333
No 325
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.77 E-value=1.1e+02 Score=26.79 Aligned_cols=73 Identities=11% Similarity=0.054 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|......+...++..|..+...... ++.....+.++..+ ..+++.|++..... ..++.+.+++.
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~------~~~vdgiIi~~~~~-------~~~~~~~~~~~ 86 (291)
T 3egc_A 23 FAEVASGVESEARHKGYSVLLANTA---EDIVREREAVGQFF------ERRVDGLILAPSEG-------EHDYLRTELPK 86 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHH------HTTCSEEEECCCSS-------CCHHHHHSSCT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHH------HCCCCEEEEeCCCC-------ChHHHHHhhcc
Confidence 3445566666678889999888532 12121144444444 35677777754332 23445556677
Q ss_pred CCCEEEEec
Q 012991 220 GVDQVFVDA 228 (452)
Q Consensus 220 ~~~~~ivD~ 228 (452)
+++.+++|.
T Consensus 87 ~iPvV~~~~ 95 (291)
T 3egc_A 87 TFPIVAVNR 95 (291)
T ss_dssp TSCEEEESS
T ss_pred CCCEEEEec
Confidence 886566774
No 326
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=20.62 E-value=3e+02 Score=23.83 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH-HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD 218 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~ 218 (452)
|.....++...+...|..+....+. ...+... .+.++..+ ..+++.+++..... .......+.+++
T Consensus 16 ~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~vdgiIi~~~~~-----~~~~~~~~~~~~ 82 (288)
T 1gud_A 16 WVDMKKGIEDEAKTLGVSVDIFASP--SEGDFQSQLQLFEDLS------NKNYKGIAFAPLSS-----VNLVMPVARAWK 82 (288)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECS--STTCHHHHHHHHHHHH------TSSEEEEEECCSSS-----STTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCC--CCCCHHHHHHHHHHHH------HcCCCEEEEeCCCh-----HHHHHHHHHHHH
Confidence 4445566666677789888776410 1222222 44555555 46788888753321 122233445566
Q ss_pred cCCCEEEEec
Q 012991 219 EGVDQVFVDA 228 (452)
Q Consensus 219 ~~~~~~ivD~ 228 (452)
.+++.+++|.
T Consensus 83 ~~iPvV~~~~ 92 (288)
T 1gud_A 83 KGIYLVNLDE 92 (288)
T ss_dssp TTCEEEEESS
T ss_pred CCCeEEEECC
Confidence 7885566664
No 327
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=20.44 E-value=2.7e+02 Score=24.04 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHc
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDE 219 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~ 219 (452)
|.....++...++..|.++...... .+...-.+.++..+ ..+++.|++.... . ....+..+.+++.
T Consensus 17 ~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~------~~~vdgiI~~~~~-~----~~~~~~~~~~~~~ 82 (290)
T 2fn9_A 17 FVVLAETAKQRAEQLGYEATIFDSQ---NDTAKESAHFDAII------AAGYDAIIFNPTD-A----DGSIANVKRAKEA 82 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHH------HTTCSEEEECCSC-T----TTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCC---CCHHHHHHHHHHHH------HcCCCEEEEecCC-h----HHHHHHHHHHHHC
Confidence 4445566666678889988877431 12111244555555 3467777765322 1 1223344556677
Q ss_pred CCCEEEEec
Q 012991 220 GVDQVFVDA 228 (452)
Q Consensus 220 ~~~~~ivD~ 228 (452)
+++.+++|.
T Consensus 83 ~iPvV~~~~ 91 (290)
T 2fn9_A 83 GIPVFCVDR 91 (290)
T ss_dssp TCCEEEESS
T ss_pred CCeEEEEec
Confidence 886566664
No 328
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=20.42 E-value=4.2e+02 Score=23.49 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=50.5
Q ss_pred HHHHHHhHhCCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCC
Q 012991 85 SRAAVKDLINADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLP 164 (452)
Q Consensus 85 ~~~~la~~~~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~ 164 (452)
+++++.-+-. ..|.+.+|||-. +.++. + | .+ ..+-..|...|+..+++.-.
T Consensus 82 l~ekI~l~~~----~gV~v~~GGTlf-E~~l~-----------q-g--------~~----~~yl~~~k~lGF~~IEISdG 132 (276)
T 1u83_A 82 LEEKISTLKE----HDITFFFGGTLF-EKYVS-----------Q-K--------KV----NEFHRYCTYFGCEYIEISNG 132 (276)
T ss_dssp HHHHHHHHHH----TTCEEEECHHHH-HHHHH-----------T-T--------CH----HHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHH----cCCeEeCCcHHH-HHHHH-----------c-C--------cH----HHHHHHHHHcCCCEEEECCC
Confidence 6666655532 356788888854 44443 1 1 12 22222377789999988421
Q ss_pred CCCCChHHH-HHHHHHHHhccccCCCceEEEEEec-cCCC-CcccccHHHHHHHHH---HcCCCEEEEec
Q 012991 165 FPLASEEEI-INEFKKGIEKGKKDGKMIRLAIIDH-ITSM-PCVVIPVRKLVKICR---DEGVDQVFVDA 228 (452)
Q Consensus 165 ~~~~~~~~~-~~~l~~~i~~~~~~~~~~~lv~~~~-~~n~-tG~~~~l~~i~~l~~---~~~~~~~ivD~ 228 (452)
.-.+ .++..+.|++. .+. .-|..+- --.+ .....+..++++.++ +.|+|.||+++
T Consensus 133 -----ti~l~~~~~~~lI~~a---~~~-f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 193 (276)
T 1u83_A 133 -----TLPMTNKEKAAYIADF---SDE-FLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEA 193 (276)
T ss_dssp -----SSCCCHHHHHHHHHHH---TTT-SEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-
T ss_pred -----cccCCHHHHHHHHHHH---Hhh-cEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 1112 34445555432 233 2233332 1112 022234444444444 45887778875
No 329
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=20.41 E-value=3.6e+02 Score=22.99 Aligned_cols=96 Identities=5% Similarity=0.032 Sum_probs=48.8
Q ss_pred CCCCCCcEEEecChhHHHHHHHHHhhcccccCCCCCCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHH
Q 012991 94 NADDVGEISLVDNATTAAAIVLQQIGRGFTEGRFHRNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEI 173 (452)
Q Consensus 94 ~~~~~~~i~~t~g~t~a~~~~~~~l~~~~~~~~~~~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 173 (452)
++. ...+++..||..|...+-. | ++.|-.|.+.+++.... +..+++..+++ ++.- +...
T Consensus 28 ~L~-gk~VLVVGgG~va~~ka~~-L--------l~~GA~VtVvap~~~~~---l~~l~~~~~i~--~i~~--~~~~---- 86 (223)
T 3dfz_A 28 DLK-GRSVLVVGGGTIATRRIKG-F--------LQEGAAITVVAPTVSAE---INEWEAKGQLR--VKRK--KVGE---- 86 (223)
T ss_dssp CCT-TCCEEEECCSHHHHHHHHH-H--------GGGCCCEEEECSSCCHH---HHHHHHTTSCE--EECS--CCCG----
T ss_pred EcC-CCEEEEECCCHHHHHHHHH-H--------HHCCCEEEEECCCCCHH---HHHHHHcCCcE--EEEC--CCCH----
Confidence 443 4578888888877665554 3 35666777766665432 33334444444 3321 1111
Q ss_pred HHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHHcCCCEEEEec
Q 012991 174 INEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRDEGVDQVFVDA 228 (452)
Q Consensus 174 ~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~ 228 (452)
+ .+ ....+|+.+ ||.-.--..|.+.|+ .+++.-++|.
T Consensus 87 -~----dL-------~~adLVIaA-----T~d~~~N~~I~~~ak-~gi~VNvvD~ 123 (223)
T 3dfz_A 87 -E----DL-------LNVFFIVVA-----TNDQAVNKFVKQHIK-NDQLVNMASS 123 (223)
T ss_dssp -G----GS-------SSCSEEEEC-----CCCTHHHHHHHHHSC-TTCEEEC---
T ss_pred -h----Hh-------CCCCEEEEC-----CCCHHHHHHHHHHHh-CCCEEEEeCC
Confidence 1 12 234566553 233333456777887 8884344553
No 330
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=20.35 E-value=2.3e+02 Score=24.58 Aligned_cols=73 Identities=11% Similarity=-0.028 Sum_probs=40.1
Q ss_pred chhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHH---HHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHH
Q 012991 140 FQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIIN---EFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKIC 216 (452)
Q Consensus 140 ~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~ 216 (452)
|.....++...++..|.++....... +. ..-.+ .++..+ ..+++.|++..... + .+..+.+
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~~--~~-~~~~~~~~~~~~l~------~~~vdgiIi~~~~~------~-~~~~~~l 86 (290)
T 2rgy_A 23 YGTILKQTDLELRAVHRHVVVATGCG--ES-TPREQALEAVRFLI------GRDCDGVVVISHDL------H-DEDLDEL 86 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCS--SS-CHHHHHHHHHHHHH------HTTCSEEEECCSSS------C-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCC--ch-hhhhhHHHHHHHHH------hcCccEEEEecCCC------C-HHHHHHH
Confidence 44455666666788899887764321 11 11133 455555 35677777754321 1 2333445
Q ss_pred HHcCCCEEEEec
Q 012991 217 RDEGVDQVFVDA 228 (452)
Q Consensus 217 ~~~~~~~~ivD~ 228 (452)
++.+++.+++|.
T Consensus 87 ~~~~iPvV~~~~ 98 (290)
T 2rgy_A 87 HRMHPKMVFLNR 98 (290)
T ss_dssp HHHCSSEEEESS
T ss_pred hhcCCCEEEEcc
Confidence 567886566774
No 331
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=20.34 E-value=64 Score=30.93 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=44.9
Q ss_pred CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHH
Q 012991 138 CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR 217 (452)
Q Consensus 138 ~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~ 217 (452)
..+.++...+..+ ...|+..+++.+ ..+.. . .++-.+.= +..+....|...+++++++-||
T Consensus 20 Gd~~gi~~~LdyL-~~LGv~~I~L~P---i~~~~----------~---~~GY~~~d--y~~idp~~Gt~~df~~lv~~aH 80 (441)
T 1lwj_A 20 GDFRGLKNAVSYL-KELGIDFVWLMP---VFSSI----------S---FHGYDVVD--FYSFKAEYGSEREFKEMIEAFH 80 (441)
T ss_dssp CCHHHHHHTHHHH-HHTTCCEEEECC---CEECS----------S---SSCCSCSE--EEEECTTTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHhhHHH-HHcCCCEEEeCC---CcCCC----------C---CCCCCccc--ccccCcccCCHHHHHHHHHHHH
Confidence 3455555555554 567888888853 21110 0 01222222 2223445699999999999999
Q ss_pred HcCCCEEEEecc
Q 012991 218 DEGVDQVFVDAA 229 (452)
Q Consensus 218 ~~~~~~~ivD~a 229 (452)
+.|+ -||+|.+
T Consensus 81 ~~Gi-~VilD~V 91 (441)
T 1lwj_A 81 DSGI-KVVLDLP 91 (441)
T ss_dssp HTTC-EEEEEEC
T ss_pred HCCC-EEEEEeC
Confidence 9999 8999976
No 332
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.32 E-value=4.2e+02 Score=22.94 Aligned_cols=86 Identities=12% Similarity=0.167 Sum_probs=53.8
Q ss_pred CCEEEEe--CC-cchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCccc
Q 012991 130 NDTVLML--HC-AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVV 206 (452)
Q Consensus 130 g~~Vl~~--~~-~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~ 206 (452)
+.+|++. .. .|.--...+..+.+..|.++..+...-| .+++.++++ ..++.+|.++...+ ...
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp-------~e~l~~~~~-----~~~~d~V~lS~l~~--~~~ 188 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVP-------AEEVLAAVQ-----KEKPIMLTGTALMT--TTM 188 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECC-------SHHHHHHHH-----HHCCSEEEEECCCT--TTT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC-------HHHHHHHHH-----HcCCCEEEEEeecc--CCH
Confidence 4466654 22 3444445556666888999998854222 355655554 25778888876543 345
Q ss_pred ccHHHHHHHHHHcC--CCEEEEeccc
Q 012991 207 IPVRKLVKICRDEG--VDQVFVDAAH 230 (452)
Q Consensus 207 ~~l~~i~~l~~~~~--~~~~ivD~a~ 230 (452)
..++++.+..++.+ + .+++=|+.
T Consensus 189 ~~~~~~i~~l~~~~~~~-~v~vGG~~ 213 (258)
T 2i2x_B 189 YAFKEVNDMLLENGIKI-PFACGGGA 213 (258)
T ss_dssp THHHHHHHHHHTTTCCC-CEEEESTT
T ss_pred HHHHHHHHHHHhcCCCC-cEEEECcc
Confidence 56788888777754 7 57776643
No 333
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=20.30 E-value=55 Score=31.53 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.4
Q ss_pred cCCCCcccccHHHHHHHHHHcCCCEEEEecc
Q 012991 199 ITSMPCVVIPVRKLVKICRDEGVDQVFVDAA 229 (452)
Q Consensus 199 ~~n~tG~~~~l~~i~~l~~~~~~~~~ivD~a 229 (452)
+....|...+++++++-||+.|+ -||+|.+
T Consensus 57 idp~~Gt~~dfk~Lv~~aH~~Gi-~VilD~V 86 (448)
T 1g94_A 57 LQSRGGNRAQFIDMVNRCSAAGV-DIYVDTL 86 (448)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHCCC-EEEEEEe
Confidence 44567889999999999999999 8999976
No 334
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=20.29 E-value=1.7e+02 Score=25.98 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=45.3
Q ss_pred CCCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEeCCCCC-CChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccc
Q 012991 129 RNDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQLPFPL-ASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVI 207 (452)
Q Consensus 129 ~g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~-~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~ 207 (452)
++..+++..+.|.-. ++++|.+...+.-..+. .....-+.+|.+.++ ..++++|+++...++
T Consensus 176 ~~~~~v~~H~af~Yf-------~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik-----~~~v~~if~e~~~~~----- 238 (284)
T 3cx3_A 176 TQKTFVTQHTAFSYL-------AKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVK-----TYKVKTIFTESNASS----- 238 (284)
T ss_dssp SCCCEEEEESCCHHH-------HHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHH-----HTTCCCEEECSSSCC-----
T ss_pred CCCEEEEECCchHHH-------HHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHH-----HcCCCEEEEeCCCCc-----
Confidence 456788877776433 67789987765421111 111112566666665 357778877654432
Q ss_pred cHHHHHHHHHHcCCCEEEEe
Q 012991 208 PVRKLVKICRDEGVDQVFVD 227 (452)
Q Consensus 208 ~l~~i~~l~~~~~~~~~ivD 227 (452)
+-+..++++.|+..+.+|
T Consensus 239 --~~~~~ia~~~g~~v~~l~ 256 (284)
T 3cx3_A 239 --KVAETLVKSTGVGLKTLN 256 (284)
T ss_dssp --HHHHHHHSSSSCCEEECC
T ss_pred --HHHHHHHHHcCCeEEEec
Confidence 334556888888433444
No 335
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=20.25 E-value=3.5e+02 Score=23.21 Aligned_cols=17 Identities=0% Similarity=-0.138 Sum_probs=9.4
Q ss_pred CceEEEEEeccCCCCcc
Q 012991 189 KMIRLAIIDHITSMPCV 205 (452)
Q Consensus 189 ~~~~lv~~~~~~n~tG~ 205 (452)
.++.+++.+......+.
T Consensus 86 g~id~lvnnAg~~~~~~ 102 (265)
T 3lf2_A 86 GCASILVNNAGQGRVST 102 (265)
T ss_dssp CSCSEEEECCCCCCCBC
T ss_pred CCCCEEEECCCCCCCCC
Confidence 45667766655444333
No 336
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=20.16 E-value=3.2e+02 Score=24.60 Aligned_cols=75 Identities=7% Similarity=0.064 Sum_probs=43.9
Q ss_pred CCEEEEeCCcchhHHHHHHHHHHhcCcEEEEEe-CCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCccccc
Q 012991 130 NDTVLMLHCAFQAVKKSIQAYVTRAGGSVVEVQ-LPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIP 208 (452)
Q Consensus 130 g~~Vl~~~~~~~s~~~~~~~~a~~~g~~v~~~~-~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~ 208 (452)
+..+++.++.|.- +++++|++...+. +.......-.-+..+.+.++ ..++++|+++...++
T Consensus 190 ~~~~v~~H~af~Y-------fa~~yGl~~~~~~~i~~~~ePs~~~l~~l~~~ik-----~~~v~~If~e~~~~~------ 251 (307)
T 3ujp_A 190 QRFLVSCEGAFSY-------LARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVK-----TNNVPTIFCESTVSD------ 251 (307)
T ss_dssp GCEEEEEESTTHH-------HHHHTTCEEEEEESSCCSSCCCHHHHHHHHHHHH-----TTTCSEEEEETTSCS------
T ss_pred CCEEEEECchHHH-------HHHHCCCcEEEeeccCCCCCCCHHHHHHHHHHHH-----hcCCcEEEEeCCCCh------
Confidence 4567776666543 3677899987653 11011111122566666665 467888888754443
Q ss_pred HHHHHHHHHHcCCCEE
Q 012991 209 VRKLVKICRDEGVDQV 224 (452)
Q Consensus 209 l~~i~~l~~~~~~~~~ 224 (452)
+.+..++++.|+ .+
T Consensus 252 -k~~~~ia~e~g~-~v 265 (307)
T 3ujp_A 252 -KGQKQVAQATGA-RF 265 (307)
T ss_dssp -HHHHHTTTTTCC-EE
T ss_pred -HHHHHHHHHhCC-ce
Confidence 445667888888 55
No 337
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=20.15 E-value=2.9e+02 Score=23.85 Aligned_cols=74 Identities=7% Similarity=-0.140 Sum_probs=40.5
Q ss_pred cchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHHH
Q 012991 139 AFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICRD 218 (452)
Q Consensus 139 ~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~~ 218 (452)
-|.....++...++..|.++............ .+.++..+ ..+++.|++..... . + +..+.+++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~---~~~~~~l~------~~~vdgiIi~~~~~-~----~--~~~~~l~~ 85 (287)
T 3bbl_A 22 ILDQFLSSMVREAGAVNYFVLPFPFSEDRSQI---DIYRDLIR------SGNVDGFVLSSINY-N----D--PRVQFLLK 85 (287)
T ss_dssp THHHHHHHHHHHHHHTTCEEEECCCCSSTTCC---HHHHHHHH------TTCCSEEEECSCCT-T----C--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEeCCCchHHH---HHHHHHHH------cCCCCEEEEeecCC-C----c--HHHHHHHh
Confidence 34556677777778889888765321111111 34444444 45677777754322 1 1 33344556
Q ss_pred cCCCEEEEec
Q 012991 219 EGVDQVFVDA 228 (452)
Q Consensus 219 ~~~~~~ivD~ 228 (452)
.+++.+.+|.
T Consensus 86 ~~iPvV~~~~ 95 (287)
T 3bbl_A 86 QKFPFVAFGR 95 (287)
T ss_dssp TTCCEEEESC
T ss_pred cCCCEEEECC
Confidence 7886566664
No 338
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=20.06 E-value=3.4e+02 Score=24.27 Aligned_cols=74 Identities=12% Similarity=-0.014 Sum_probs=42.7
Q ss_pred CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHHHHHHHhccccCCCceEEEEEeccCCCCcccccHHHHHHHHH
Q 012991 138 CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINEFKKGIEKGKKDGKMIRLAIIDHITSMPCVVIPVRKLVKICR 217 (452)
Q Consensus 138 ~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~l~~ 217 (452)
+-|......+...++..|..+...... .+.....+.++..+ ..+++.|++..... + +...+.++
T Consensus 81 ~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~l~------~~~vdGiIi~~~~~------~-~~~~~~l~ 144 (344)
T 3kjx_A 81 MVFPEVLTGINQVLEDTELQPVVGVTD---YLPEKEEKVLYEML------SWRPSGVIIAGLEH------S-EAARAMLD 144 (344)
T ss_dssp SSHHHHHHHHHHHHTSSSSEEEEEECT---TCHHHHHHHHHHHH------TTCCSEEEEECSCC------C-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHH------hCCCCEEEEECCCC------C-HHHHHHHH
Confidence 345556667777677889988776431 12222244555555 45677777753321 1 24456667
Q ss_pred HcCCCEEEEe
Q 012991 218 DEGVDQVFVD 227 (452)
Q Consensus 218 ~~~~~~~ivD 227 (452)
+.+++.+++|
T Consensus 145 ~~~iPvV~i~ 154 (344)
T 3kjx_A 145 AAGIPVVEIM 154 (344)
T ss_dssp HCSSCEEEEE
T ss_pred hCCCCEEEEe
Confidence 7888656664
No 339
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=20.02 E-value=3.7e+02 Score=22.82 Aligned_cols=91 Identities=10% Similarity=-0.027 Sum_probs=40.2
Q ss_pred CcEEEecChhHHHHHH-HHHhhcccccCCCCCCCEEEEeC-CcchhHHHHHHHHHHhcCcEEEEEeCCCCCCChHHHHHH
Q 012991 99 GEISLVDNATTAAAIV-LQQIGRGFTEGRFHRNDTVLMLH-CAFQAVKKSIQAYVTRAGGSVVEVQLPFPLASEEEIINE 176 (452)
Q Consensus 99 ~~i~~t~g~t~a~~~~-~~~l~~~~~~~~~~~g~~Vl~~~-~~~~s~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~ 176 (452)
...++.+|++.++-.. +..| .+.|.+|++.. ..-......... ....+.++..+.. +..+...+.+.
T Consensus 13 ~k~vlITGas~giG~~ia~~l--------~~~G~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--Dv~~~~~v~~~ 81 (256)
T 3ezl_A 13 QRIAYVTGGMGGIGTSICQRL--------HKDGFRVVAGCGPNSPRRVKWLED-QKALGFDFYASEG--NVGDWDSTKQA 81 (256)
T ss_dssp CEEEEETTTTSHHHHHHHHHH--------HHTTEEEEEEECTTCSSHHHHHHH-HHHTTCCCEEEEC--CTTCHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHH--------HHCCCEEEEEeCCCHHHHHHHHHH-HHhcCCeeEEEec--CCCCHHHHHHH
Confidence 4556666665554332 2223 35566666532 222222222222 2334555555543 23333322222
Q ss_pred HHHHHhccccCCCceEEEEEeccCCCCc
Q 012991 177 FKKGIEKGKKDGKMIRLAIIDHITSMPC 204 (452)
Q Consensus 177 l~~~i~~~~~~~~~~~lv~~~~~~n~tG 204 (452)
+++..++ ..++.+++.+......+
T Consensus 82 ~~~~~~~----~g~id~lv~~Ag~~~~~ 105 (256)
T 3ezl_A 82 FDKVKAE----VGEIDVLVNNAGITRDV 105 (256)
T ss_dssp HHHHHHH----TCCEEEEEECCCCCCCC
T ss_pred HHHHHHh----cCCCCEEEECCCCCCCC
Confidence 2222222 34677777766544433
Done!