BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012994
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 147/316 (46%), Gaps = 28/316 (8%)
Query: 49 KLEKIFAR--PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS 106
K K++ R + L GH + +A +P+ + S S D ++LW+ N + + +
Sbjct: 38 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWN-RNGQLLQTLT 95
Query: 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSF 166
GH +VRG+ S DG+ + S D TVKLWN L + L + +S
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----------QTLTGH--SSSV 142
Query: 167 WAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W V +G A+A V +WN N Q + + + +V V F+P + +A+ +
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DGQTIASASD 200
Query: 225 DRSITLYDLRMSSPARKVIMRTKS-NSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283
D+++ L++ R + + + S ++++P + +A++D ++ + +
Sbjct: 201 DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN--RNGQLLQ 256
Query: 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 343
GH S+V + + P G+ + S D+T++++ NG + + T V+ V FS D
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPD 314
Query: 344 ASYVISGSDDTNLRLW 359
+ S SDD ++LW
Sbjct: 315 GQTIASASDDKTVKLW 330
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 146/316 (46%), Gaps = 28/316 (8%)
Query: 49 KLEKIFAR--PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS 106
K K++ R + L GH ++ +A P+ + S S D ++LW+ N + + +
Sbjct: 243 KTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWN-RNGQLLQTLT 300
Query: 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSF 166
GH +V G+ S DG+ + S D TVKLWN L + L + +S
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-----------QTLTGH--SSSV 347
Query: 167 WAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W V +G A+A V +WN N Q + + + +V V F+P + +A+ +
Sbjct: 348 WGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASD 405
Query: 225 DRSITLYDLRMSSPARKVIMRTKSN-SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283
D+++ L++ R + + + S ++++P + +A++D ++ + +
Sbjct: 406 DKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWN--RNGQLLQ 461
Query: 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 343
GH S+V + +SP G+ + S D+T++++ NG + + T V V FS D
Sbjct: 462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPD 519
Query: 344 ASYVISGSDDTNLRLW 359
+ S SDD ++LW
Sbjct: 520 GQTIASASDDKTVKLW 535
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 145/316 (45%), Gaps = 28/316 (8%)
Query: 49 KLEKIFAR--PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS 106
K K++ R + L GH + +A +P+ + S S D ++LW+ N + + +
Sbjct: 284 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWN-RNGQHLQTLT 341
Query: 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSF 166
GH +V G+ S DG+ + S D TVKLWN L + L + +S
Sbjct: 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----------QTLTGH--SSSV 388
Query: 167 WAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
V +G A+A V +WN N Q + + + +V V F+P + +A+ +
Sbjct: 389 RGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DDQTIASASD 446
Query: 225 DRSITLYDLRMSSPARKVIMRTKS-NSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283
D+++ L++ R + + + S ++++P + +A++D ++ + +
Sbjct: 447 DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN--RNGQLLQ 502
Query: 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 343
GH S+V + +SP G+ + S D+T++++ NG + + T V+ V FS D
Sbjct: 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPD 560
Query: 344 ASYVISGSDDTNLRLW 359
+ S S D ++LW
Sbjct: 561 GQTIASASSDKTVKLW 576
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 118/255 (46%), Gaps = 24/255 (9%)
Query: 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFW 167
H +VRG+ S DG+ + S D TVKLWN L + L + +S W
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----------QTLTGH--SSSVW 61
Query: 168 AVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD 225
V +G A+A V +WN N Q + + + +V V F+P + +A+ + D
Sbjct: 62 GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD 119
Query: 226 RSITLYDLRMSSPARKVIMRTKSN-SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV 284
+++ L++ R + + + S ++++P + +A++D ++ + +
Sbjct: 120 KTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN--RNGQLLQT 175
Query: 285 HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344
GH S+V + +SP G+ + S D+T++++ NG + + T V V FS D
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDG 233
Query: 345 SYVISGSDDTNLRLW 359
+ S SDD ++LW
Sbjct: 234 QTIASASDDKTVKLW 248
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 49 KLEKIFAR--PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS 106
K K++ R + L GH + +A +P+ + S S D ++LW+ N + + +
Sbjct: 489 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWN-RNGQLLQTLT 546
Query: 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
GH +V G+ S DG+ + S +D TVKLWN
Sbjct: 547 GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 138/344 (40%), Gaps = 46/344 (13%)
Query: 39 VEYVRALTAAKLEKIFARPFIGALDGHRDGI--SCMAKNPNYLKGFFSGSMDGDIRLWDI 96
+E++ L ++ RP H D + +C +++ + S D ++++
Sbjct: 601 LEWINKKNITNLSRLVVRP-------HTDAVYHACFSEDGQRIA---SCGADKTLQVFKA 650
Query: 97 ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEP 156
+ + H+ V STD R + +C D VK+WN L E
Sbjct: 651 ETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHS---EQ 707
Query: 157 LAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPA 214
+ + NS H L AT + + +W+ N+ + N+ T++V RF+P
Sbjct: 708 VNCCHFTNS----SHHL---LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP- 759
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYD 274
+ +LA+ ++D ++ L+D S+ RK I + +P E M C +S D
Sbjct: 760 DDKLLASCSADGTLKLWD-ATSANERKSINVKQFFLNLEDPQEDMEVIVK---CCSWSAD 815
Query: 275 -SRKLDEAKC---------------VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318
+R + AK +H GH S + D+SP V + ++
Sbjct: 816 GARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNT 875
Query: 319 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362
+ RS+ + V V FS D S ++ SDD +RLW+ K
Sbjct: 876 DS-RSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/335 (18%), Positives = 117/335 (34%), Gaps = 66/335 (19%)
Query: 91 IRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXX 150
+ LW+ +R V GH V G+ S DG ++ D T++LW T
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE----TKKVCKNSA 925
Query: 151 XXXXEPLAVYVWKNSF--WAVDHQWEGDLFATAGAQVD------------------IWNH 190
+ + V +N AVDH L Q+D I
Sbjct: 926 VMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFG 985
Query: 191 NRSQPINSFQWGTDTVISVRFN----------PAEPNVLATTASDRSITLYDLRM----- 235
+ + I + + + RF A+ L +++ D I +++ ++
Sbjct: 986 DENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF 1045
Query: 236 ----SSPARKVIMRTKSNSISWN---PMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH 288
+ + S +SW+ ++ N N++ + + H
Sbjct: 1046 LRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD---------------FVCH 1090
Query: 289 ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR--VFCVKFSCDASY 346
+ V+ D S +F + S D+T +I+ ++ H R V C FS D++
Sbjct: 1091 QGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLP---LHELRGHNGCVRCSAFSVDSTL 1147
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
+ +G D+ +R+W E L + P + A H
Sbjct: 1148 LATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATH 1182
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 62 LDGHRDGISCMAKNPNYLKG--FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
L GH++ + K+ LK S S DG +++W+I + HQG V +S
Sbjct: 1046 LRGHQETV----KDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISH 1101
Query: 120 DGRILVSCGTDCTVKLWNVPV 140
D S D T K+W+ +
Sbjct: 1102 DATKFSSTSADKTAKIWSFDL 1122
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYV 347
H AV +S G+ + D+T+++F+ G + + V C FS D ++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGE-KLLEIKAHEDEVLCCAFSTDDRFI 678
Query: 348 ISGSDDTNLRLWKAKASE 365
+ S D +++W + E
Sbjct: 679 ATCSVDKKVKIWNSMTGE 696
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 38 AVEYVRALTAAKLEKIFARPFIGALDGHRDG-ISCMAKNPNYLKGFFSGSMDGDIRLWDI 96
AV+++R +L+ I R G +D + +SC +P +L+ G +G I + ++
Sbjct: 945 AVDHIR-----RLQLINGRT--GQIDYLTEAQVSCCCLSP-HLQYIAFGDENGAIEILEL 996
Query: 97 ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
N R H+ V + + D + L+S D +++WN
Sbjct: 997 VNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1037
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 8/110 (7%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141
F S S D ++W + + GH G VR S D +L + + +++WNV
Sbjct: 1106 FSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNG 1165
Query: 142 TLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQW--EGDLFATAGAQVDIWN 189
L E A + W D + +G + +AG + WN
Sbjct: 1166 EL--LHLCAPLSEEGAATH----GGWVTDLCFSPDGKMLISAGGYIKWWN 1209
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138
K S S D +I++W+ + + GHQ V+ + + R+L S D TVK+WN+
Sbjct: 1022 KTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNI 1078
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKS-NSISWNPMEPMNFTAANEDCNCYSY 273
+ N + T++ D + L+D+ T S+S P + F + D + +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLW 211
Query: 274 DSRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTK 330
D R E C GHES + I + P G F TGS D T R+F + Y H
Sbjct: 212 DVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 331 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 376
+ + V FS +++G DD N +W A +++ GVL + R
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 56/257 (21%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +SC + + S D LWDI + ++GH G V L+++ D
Sbjct: 139 LAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
R+ VS D + KLW+V + + +F + F
Sbjct: 197 RLFVSGACDASAKLWDVREG-------------------MCRQTFTGHESDINAICFFPN 237
Query: 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT-LYDLRMSSPAR 240
G N+F G+D F+ L T + D I + + S R
Sbjct: 238 G--------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 241 KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 300
++ A +D NC +D+ K D A V GH++ V + +
Sbjct: 284 LLL-------------------AGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGVTDD 323
Query: 301 GREFVTGSYDRTIRIFQ 317
G TGS+D ++I+
Sbjct: 324 GMAVATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 7/161 (4%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPMEPMN 260
T V+S+ P + + + A D S L+D+R R+ +S N+I + P
Sbjct: 184 TGDVMSLSLAP-DTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFP-NGNA 240
Query: 261 FTAANEDCNCYSYDSRKLDEAKCV-HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
F ++D C +D R E H + + +S +GR + G D ++
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 320 GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360
R RV C+ + D V +GS D+ L++W
Sbjct: 301 KA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 46/344 (13%)
Query: 39 VEYVRALTAAKLEKIFARPFIGALDGHRDGI--SCMAKNPNYLKGFFSGSMDGDIRLWDI 96
+E++ T L ++ RP H D + +C +++ + S D ++++
Sbjct: 602 LEWINKKTIKNLSRLVVRP-------HTDAVYHACFSQDGQRIA---SCGADKTLQVFKA 651
Query: 97 ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEP 156
+ H+ V S+D + +C D VK+W+ L
Sbjct: 652 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC 711
Query: 157 LAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPA 214
N L AT + +W+ N+ + N+ T++V RF+P
Sbjct: 712 CHFTNKSNHL----------LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP- 760
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYD 274
+ +LA+ ++D ++ L+D+R S+ RK I + S +P E + C +S D
Sbjct: 761 DDELLASCSADGTLRLWDVR-SANERKSINVKRFFLSSEDPPEDVEVIVK---CCSWSAD 816
Query: 275 SRKLDEAKC----------------VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318
K+ A +H GH S + D+SP V + ++
Sbjct: 817 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 876
Query: 319 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362
+ R + + V V FS D S ++ SDD +R+W+ K
Sbjct: 877 DS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 72/174 (41%), Gaps = 14/174 (8%)
Query: 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128
+SC +P +L+ G DG I++ ++ N R GH+ AVR + + DG+ L+S
Sbjct: 971 VSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1029
Query: 129 TDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIW 188
D +++WN + + + W+ D V +W
Sbjct: 1030 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFD------------GTVKVW 1077
Query: 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV 242
N + F TV+S + ++ ++T++D++ ++ + SP ++
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDLLSPLHEL 1130
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 150/376 (39%), Gaps = 73/376 (19%)
Query: 41 YVRALTAAKLEKIF---ARPFIGALDGHRDGISC--MAKNPNYLKGFFSGSMDGDIRLWD 95
Y+ +A K KI+ + D H + ++C N+L +GS D ++LWD
Sbjct: 678 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL-LATGSNDFFLKLWD 736
Query: 96 IANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT------LXXXXXX 149
+ + GH +V S D +L SC D T++LW+V A +
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 796
Query: 150 XXXXXEPLAVYVWKNSFWAVDHQWEGD-LFATAGAQVDIWNHNRSQPINSFQWGTDTVIS 208
E + V V K W+ D GD + A +V +++ + S + G + I
Sbjct: 797 SEDPPEDVEVIV-KCCSWSAD----GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 851
Query: 209 -VRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISW------NPMEPMNF 261
F+P + LA A ++ Y + + + ++ + +SW +P + +F
Sbjct: 852 YCDFSPYDH--LAVIA----LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSF 904
Query: 262 TAANEDCNCYSYDSRKL---------DEAKCVHMGHESAVM----------------DID 296
A++D ++++K+ E V +E+ V+ ID
Sbjct: 905 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 964
Query: 297 YSPTGR----------EFVT-GSYDRTIRIFQYNGGR--SREIYHTKRMQRVFCVKFSCD 343
Y P + E+V G D I+I + R S + H K ++ + +F+ D
Sbjct: 965 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI---QFTAD 1021
Query: 344 ASYVISGSDDTNLRLW 359
+IS S+D+ +++W
Sbjct: 1022 GKTLISSSEDSVIQVW 1037
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYV 347
H AV +S G+ + D+T+++F+ G + + V C FS D SY+
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYI 679
Query: 348 ISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHL 391
+ S D +++W + + + ++ + H N+ HL
Sbjct: 680 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH--FTNKSNHL 721
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141
F S S D ++W + + GH G VR S DG +L + + +++WNV
Sbjct: 1107 FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1166
Query: 142 TL 143
L
Sbjct: 1167 QL 1168
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 46 TAAKLEKIFARPFIG---ALDGHRDGISCMAKNPNYLKGFF--SGSMDGDIRLWDIANRR 100
+A K KI++ + L GH + C A + L G +G +G+IR+W++++ +
Sbjct: 1111 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS---LDGILLATGDDNGEIRIWNVSDGQ 1167
Query: 101 TV--CQ-------YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141
+ C + H G V + S D + LVS G +K WNV
Sbjct: 1168 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATG 1215
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR-VFCVKFSCDASY 346
H+ V+ S +F + S D+T +I+ ++ ++ K V C FS D
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFD--LLSPLHELKGHNGCVRCSAFSLDGIL 1148
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHP 372
+ +G D+ +R+W + L P
Sbjct: 1149 LATGDDNGEIRIWNVSDGQLLHSCAP 1174
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 46/344 (13%)
Query: 39 VEYVRALTAAKLEKIFARPFIGALDGHRDGI--SCMAKNPNYLKGFFSGSMDGDIRLWDI 96
+E++ T L ++ RP H D + +C +++ + S D ++++
Sbjct: 595 LEWINKKTIKNLSRLVVRP-------HTDAVYHACFSQDGQRIA---SCGADKTLQVFKA 644
Query: 97 ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEP 156
+ H+ V S+D + +C D VK+W+ L
Sbjct: 645 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC 704
Query: 157 LAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPA 214
N L AT + +W+ N+ + N+ T++V RF+P
Sbjct: 705 CHFTNKSNHL----------LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP- 753
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYD 274
+ +LA+ ++D ++ L+D+R S+ RK I + S +P E + C +S D
Sbjct: 754 DDELLASCSADGTLRLWDVR-SANERKSINVKRFFLSSEDPPEDVEVIVK---CCSWSAD 809
Query: 275 SRKLDEAKC----------------VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318
K+ A +H GH S + D+SP V + ++
Sbjct: 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869
Query: 319 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362
+ R + + V V FS D S ++ SDD +R+W+ K
Sbjct: 870 DS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 72/174 (41%), Gaps = 14/174 (8%)
Query: 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128
+SC +P +L+ G DG I++ ++ N R GH+ AVR + + DG+ L+S
Sbjct: 964 VSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1022
Query: 129 TDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIW 188
D +++WN + + + W+ D V +W
Sbjct: 1023 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFD------------GTVKVW 1070
Query: 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV 242
N + F TV+S + ++ ++T++D++ ++ + SP ++
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDLLSPLHEL 1123
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 150/376 (39%), Gaps = 73/376 (19%)
Query: 41 YVRALTAAKLEKIF---ARPFIGALDGHRDGISC--MAKNPNYLKGFFSGSMDGDIRLWD 95
Y+ +A K KI+ + D H + ++C N+L +GS D ++LWD
Sbjct: 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL-LATGSNDFFLKLWD 729
Query: 96 IANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT------LXXXXXX 149
+ + GH +V S D +L SC D T++LW+V A +
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789
Query: 150 XXXXXEPLAVYVWKNSFWAVDHQWEGD-LFATAGAQVDIWNHNRSQPINSFQWGTDTVIS 208
E + V V K W+ D GD + A +V +++ + S + G + I
Sbjct: 790 SEDPPEDVEVIV-KCCSWSAD----GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844
Query: 209 -VRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISW------NPMEPMNF 261
F+P + LA A ++ Y + + + ++ + +SW +P + +F
Sbjct: 845 YCDFSPYDH--LAVIA----LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSF 897
Query: 262 TAANEDCNCYSYDSRKL---------DEAKCVHMGHESAVM----------------DID 296
A++D ++++K+ E V +E+ V+ ID
Sbjct: 898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957
Query: 297 YSPTGR----------EFVT-GSYDRTIRIFQYNGGR--SREIYHTKRMQRVFCVKFSCD 343
Y P + E+V G D I+I + R S + H K ++ + +F+ D
Sbjct: 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI---QFTAD 1014
Query: 344 ASYVISGSDDTNLRLW 359
+IS S+D+ +++W
Sbjct: 1015 GKTLISSSEDSVIQVW 1030
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYV 347
H AV +S G+ + D+T+++F+ G + + V C FS D SY+
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYI 672
Query: 348 ISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHL 391
+ S D +++W + + + ++ + H N+ HL
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH--FTNKSNHL 714
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141
F S S D ++W + + GH G VR S DG +L + + +++WNV
Sbjct: 1100 FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159
Query: 142 TL 143
L
Sbjct: 1160 QL 1161
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 46 TAAKLEKIFARPFIG---ALDGHRDGISCMAKNPNYLKGFF--SGSMDGDIRLWDIANRR 100
+A K KI++ + L GH + C A + L G +G +G+IR+W++++ +
Sbjct: 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS---LDGILLATGDDNGEIRIWNVSDGQ 1160
Query: 101 TV--CQ-------YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141
+ C + H G V + S D + LVS G +K WNV
Sbjct: 1161 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATG 1208
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR-VFCVKFSCDASY 346
H+ V+ S +F + S D+T +I+ ++ ++ K V C FS D
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFD--LLSPLHELKGHNGCVRCSAFSLDGIL 1141
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHP 372
+ +G D+ +R+W + L P
Sbjct: 1142 LATGDDNGEIRIWNVSDGQLLHSCAP 1167
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKS-NSISWNPMEPMNFTAANEDCNCYSY 273
+ N + T++ D + L+D+ T S+S P + F + D + +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLW 211
Query: 274 DSRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTK 330
D R E C GHES + I + P G F TGS D T R+F + Y H
Sbjct: 212 DVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 331 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 376
+ + V FS +++G DD N +W A +++ GVL + R
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 56/257 (21%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +SC + + S D LWDI + ++GH G V L+++ D
Sbjct: 139 LAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
R+ VS D + KLW+V + + +F + F
Sbjct: 197 RLFVSGACDASAKLWDVREG-------------------MCRQTFTGHESDINAICFFPN 237
Query: 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT-LYDLRMSSPAR 240
G N+F G+D F+ L T + D I + + S R
Sbjct: 238 G--------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 241 KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 300
++ A +D NC +D+ K D A V GH++ V + +
Sbjct: 284 LLL-------------------AGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGVTDD 323
Query: 301 GREFVTGSYDRTIRIFQ 317
G TGS+D ++I+
Sbjct: 324 GMAVATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 7/161 (4%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPMEPMN 260
T V+S+ P + + + A D S L+D+R R+ +S N+I + P
Sbjct: 184 TGDVMSLSLAP-DTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFP-NGNA 240
Query: 261 FTAANEDCNCYSYDSRKLDEAKCV-HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
F ++D C +D R E H + + +S +GR + G D ++
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 320 GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360
R RV C+ + D V +GS D+ L++W
Sbjct: 301 KA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKS-NSISWNPMEPMNFTAANEDCNCYSY 273
+ N + T++ D + L+D+ T S+S P + F + D + +
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLW 222
Query: 274 DSRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTK 330
D R E C GHES + I + P G F TGS D T R+F + Y H
Sbjct: 223 DVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 279
Query: 331 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 376
+ + V FS +++G DD N +W A +++ GVL + R
Sbjct: 280 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 325
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 56/257 (21%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +SC + + S D LWDI + ++GH G V L+++ D
Sbjct: 150 LAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 207
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
R+ VS D + KLW+V + + +F + F
Sbjct: 208 RLFVSGACDASAKLWDVREG-------------------MCRQTFTGHESDINAICFFPN 248
Query: 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT-LYDLRMSSPAR 240
G N+F G+D F+ L T + D I + + S R
Sbjct: 249 G--------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 241 KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 300
++ A +D NC +D+ K D A V GH++ V + +
Sbjct: 295 LLL-------------------AGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGVTDD 334
Query: 301 GREFVTGSYDRTIRIFQ 317
G TGS+D ++I+
Sbjct: 335 GMAVATGSWDSFLKIWN 351
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPMEPMN 260
T V+S+ P + + + A D S L+D+R R+ +S N+I + P
Sbjct: 195 TGDVMSLSLAP-DTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFP-NGNA 251
Query: 261 FTAANEDCNCYSYDSRKLDEAKCVHMGHES---AVMDIDYSPTGREFVTGSYDRTIRIFQ 317
F ++D C +D R + + + H++ + + +S +GR + G D ++
Sbjct: 252 FATGSDDATCRLFDLRA--DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
Query: 318 YNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360
R RV C+ + D V +GS D+ L++W
Sbjct: 310 ALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKS-NSISWNPMEPMNFTAANEDCNCYSY 273
+ N + T++ D + L+D+ T S+S P + F + D + +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLW 211
Query: 274 DSRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTK 330
D R E C GHES + I + P G F TGS D T R+F + Y H
Sbjct: 212 DVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 331 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 376
+ + V FS +++G DD N +W A +++ GVL + R
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 56/257 (21%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +SC + + S D LWDI + ++GH G V L+++ D
Sbjct: 139 LAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
R+ VS D + KLW+V + + +F + F
Sbjct: 197 RLFVSGACDASAKLWDVREG-------------------MCRQTFTGHESDINAICFFPN 237
Query: 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT-LYDLRMSSPAR 240
G N+F G+D F+ L T + D I + + S R
Sbjct: 238 G--------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 241 KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 300
++ A +D NC +D+ K D A V GH++ V + +
Sbjct: 284 LLL-------------------AGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGVTDD 323
Query: 301 GREFVTGSYDRTIRIFQ 317
G TGS+D ++I+
Sbjct: 324 GMAVATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 7/161 (4%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPMEPMN 260
T V+S+ P + + + A D S L+D+R R+ +S N+I + P
Sbjct: 184 TGDVMSLSLAP-DTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFP-NGNA 240
Query: 261 FTAANEDCNCYSYDSRKLDEAKCV-HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
F ++D C +D R E H + + +S +GR + G D ++
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 320 GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360
R RV C+ + D V +GS D+ L++W
Sbjct: 301 KA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKS-NSISWNPMEPMNFTAANEDCNCYSY 273
+ N + T++ D + L+D+ T S+S P + F + D + +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLW 211
Query: 274 DSRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY-HTK 330
D R E C GHES + I + P G F TGS D T R+F + Y H
Sbjct: 212 DVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 331 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 376
+ + V FS +++G DD N +W A +++ GVL + R
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 56/257 (21%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH +SC + + S D LWDI + ++GH G V L+++ D
Sbjct: 139 LAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 122 RILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA 181
R+ VS D + KLW+V + + +F + F
Sbjct: 197 RLFVSGACDASAKLWDVREG-------------------MCRQTFTGHESDINAICFFPN 237
Query: 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT-LYDLRMSSPAR 240
G N+F G+D F+ L T + D I + + S R
Sbjct: 238 G--------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 241 KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 300
++ A +D NC +D+ K D A V GH++ V + +
Sbjct: 284 LLL-------------------AGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGVTDD 323
Query: 301 GREFVTGSYDRTIRIFQ 317
G TGS+D ++I+
Sbjct: 324 GMAVATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 7/161 (4%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPMEPMN 260
T V+S+ P + + + A D S L+D+R R+ +S N+I + P
Sbjct: 184 TGDVMSLSLAP-DTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFP-NGNA 240
Query: 261 FTAANEDCNCYSYDSRKLDEAKCV-HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
F ++D C +D R E H + + +S +GR + G D ++
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 320 GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360
R RV C+ + D V +GS D+ L++W
Sbjct: 301 KA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 63 DGHRDGISCMAKNPNYLK-GFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
+GHRD +SC+ +PN L+ S S D +++W+++N + +GH G V + VS DG
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 122 RILVSCGTDCTVKLWNV 138
+ S G D V LW++
Sbjct: 574 SLCASGGKDGVVLLWDL 590
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
SGS DG++RLWD+A + ++ GH V + S D R +VS D T+KLWN
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 12/167 (7%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFT 262
TD V ++ +++ + + D+SI L+ L A V R + + +E + +
Sbjct: 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHF--VEDVVLS 439
Query: 263 AANEDCNCYSYDS--RKLDEAKCV----HMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 316
+ + S+D R D A V +GH V+ + +S R+ V+ S DRTI+++
Sbjct: 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
Query: 317 QYNGGRSREIYHTKRMQR--VFCVKFSCDA--SYVISGSDDTNLRLW 359
G I R V CV+FS + ++S S D +++W
Sbjct: 500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLW---------DIANRRTVCQYSGHQG 110
G + H D ++ +A + S S D I LW +A RR +GH
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRR----LTGHSH 431
Query: 111 AVRGLTVSTDGRILVSCGTDCTVKLWNV 138
V + +S+DG+ +S D ++LW++
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDL 459
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 62 LDGHRDGISCMAKNPNYLKGFF--SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
L GH +S +A +P+ G SG DG + LWD+A + + YS +V +
Sbjct: 557 LAGHTGYVSTVAVSPD---GSLCASGGKDGVVLLWDLAEGKKL--YSLEANSVIHALCFS 611
Query: 120 DGRILVSCGTDCTVKLWNV 138
R + T+ +K+W++
Sbjct: 612 PNRYWLCAATEHGIKIWDL 630
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/371 (19%), Positives = 146/371 (39%), Gaps = 59/371 (15%)
Query: 32 LRPQEKAVEYVRALTAAKLEKIFARPFIG---------------ALDGHRDGISCMAKNP 76
+R Q+K +E L AK E P AL GHR ++ + +P
Sbjct: 59 IRLQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHP 118
Query: 77 NYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
+ S S D I++WD GH +V+ ++ G++L SC D T+KLW
Sbjct: 119 VF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Query: 137 NVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ 194
+ +++ GD +A + +W
Sbjct: 178 DFQGFECIRTMHGHDHNVSSVSIMP------------NGDHIVSASRDKTIKMWEVQTGY 225
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSN---SI 251
+ +F + V VR N + ++A+ ++D+++ ++ +++ K +R + I
Sbjct: 226 CVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVW--VVATKECKAELREHRHVVECI 282
Query: 252 SWNPMEPMNFTAANEDCNCYSYDSRK------------------LDEAKCVH--MGHESA 291
SW P ++++ +E + S K + C+ +GH++
Sbjct: 283 SWAP--ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 292 VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS 351
V + + G+ ++ + D+T+R++ Y R + + V + F A YV++GS
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE-HFVTSLDFHKTAPYVVTGS 399
Query: 352 DDTNLRLWKAK 362
D +++W+ +
Sbjct: 400 VDQTVKVWECR 410
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 7/172 (4%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS-NSISWNPMEPMNFTAA 264
V V F+P +V+ + + D +I ++D R + T S IS++ + +
Sbjct: 111 VTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL-LASC 168
Query: 265 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 324
+ D +D + + + +H GH+ V + P G V+ S D+TI++++ G
Sbjct: 169 SADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 325 EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 376
+ + T + V V+ + D + + S S+D +R+W E L RE R
Sbjct: 228 KTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL--REHR 276
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY--HTKRMQRVFCVKFSCDA 344
GH S V + + P V+ S D TI+++ Y G HT +Q + F
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD---ISFDHSG 162
Query: 345 SYVISGSDDTNLRLWKAKASEQLGVLH 371
+ S S D ++LW + E + +H
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMH 189
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 37 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 89
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 90 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 143
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 197 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 255
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 138
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 173
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 96
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTL 120
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 107 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 165
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 166 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 225
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 226 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 285
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 286 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 325
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 53 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 109
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 110 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 166
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 167 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 218 SPNGKYILAATL-DNTLKLWD 237
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 16 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 68
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 69 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 122
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 176 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 234
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 117
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 152
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 75
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTL 99
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 86 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 144
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 145 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 204
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 205 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 264
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 265 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 304
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 32 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 88
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 89 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 145
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 146 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 197 SPNGKYILAATL-DNTLKLWD 216
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 78
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 79 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 244
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 127
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 85
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 275 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 314
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 42 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 98
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 99 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 155
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 156 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 207 SPNGKYILAATL-DNTLKLWD 226
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 94
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 95 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 148
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 260
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 143
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 178
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 101
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTL 125
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 40/211 (18%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS 118
+ L GH + + C NP SGS D +R+WD+ + + H V + +
Sbjct: 122 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 180
Query: 119 TDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXXXEPL--AVYV 161
DG ++VS D ++W N PV+ + L + +
Sbjct: 181 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240
Query: 162 W--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNRSQPINSFQWG 202
W KN + + + G + +G++ V IWN + + Q
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
Query: 203 TDTVISVRFNPAEPNVLATTA--SDRSITLY 231
TD VIS +P E N++A+ A +D++I L+
Sbjct: 301 TDVVISTACHPTE-NIIASAALENDKTIKLW 330
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 58 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 114
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 115 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 171
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 172 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 223 SPNGKYILAATL-DNTLKLWD 242
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 78
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 79 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 244
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 127
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 85
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 275 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 314
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 42 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 98
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 99 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 155
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 156 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 207 SPNGKYILAATL-DNTLKLWD 226
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 72
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 73 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 238
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 121
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 79
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTL 103
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 269 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 308
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 36 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 92
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 149
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 150 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 201 SPNGKYILAATL-DNTLKLWD 220
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 72
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 73 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 238
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 121
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 79
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTL 103
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 269 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 308
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 36 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 92
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 149
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 150 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 201 SPNGKYILAATL-DNTLKLWD 220
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 44 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 96
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 97 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 150
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 204 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 262
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 145
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 180
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 103
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTL 127
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 40/211 (18%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS 118
+ L GH + + C NP SGS D +R+WD+ + + H V + +
Sbjct: 124 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 182
Query: 119 TDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXXXEPL--AVYV 161
DG ++VS D ++W N PV+ + L + +
Sbjct: 183 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 242
Query: 162 W--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNRSQPINSFQWG 202
W KN + + + G + +G++ V IWN + + Q
Sbjct: 243 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
Query: 203 TDTVISVRFNPAEPNVLATTA--SDRSITLY 231
TD VIS +P E N++A+ A +D++I L+
Sbjct: 303 TDVVISTACHPTE-NIIASAALENDKTIKLW 332
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 60 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 116
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 117 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 173
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 174 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 225 SPNGKYILAATL-DNTLKLWD 244
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 19 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 71
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 72 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 125
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 237
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 120
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 155
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 78
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTL 102
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 89 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 147
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 148 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 207
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 208 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 267
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 268 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 307
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 35 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 91
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 92 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 148
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 149 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 200 SPNGKYILAATL-DNTLKLWD 219
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 78
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 79 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 244
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 127
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 85
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 96 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 275 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 314
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 42 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 98
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 99 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 155
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 156 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 207 SPNGKYILAATL-DNTLKLWD 226
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 21 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 73
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 74 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 127
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 181 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 239
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 122
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 157
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 80
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTL 104
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 91 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 149
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 150 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 210 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 269
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 270 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 309
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 37 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 93
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 94 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 150
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 151 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 202 SPNGKYILAATL-DNTLKLWD 221
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 25 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 77
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 78 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 131
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 185 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 243
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 126
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 161
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 84
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTL 108
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 95 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 153
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 154 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 214 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 273
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 274 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 313
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 41 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 97
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 98 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 154
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 155 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 206 SPNGKYILAATL-DNTLKLWD 225
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 75
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 76 -WSSDS----NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 241
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 124
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 159
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I LY
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLY 311
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 82
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTL 106
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 39 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 95
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 152
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 153 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 204 SPNGKYILAATL-DNTLKLWD 223
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 75
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 76 -WSSDS----NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 241
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 124
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 159
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 82
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTL 106
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 40/208 (19%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH + + C NP SGS D +R+WD+ + + H V + + DG
Sbjct: 106 LKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 122 RILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXXXEPL--AVYVW-- 162
++VS D ++W N PV+ + L + +W
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 163 ------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNRSQPINSFQWGTDT 205
KN + + + G + +G++ V IWN + + Q TD
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 206 VISVRFNPAEPNVLATTA--SDRSITLY 231
VIS +P E N++A+ A +D++I L+
Sbjct: 285 VISTACHPTE-NIIASAALENDKTIKLF 311
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 39 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 95
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 152
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 153 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 204 SPNGKYILAATL-DNTLKLWD 223
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 75
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 76 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 241
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 124
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K L L A H
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVH 159
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 82
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTL 106
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + H
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQT 271
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 39 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 95
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC---LKTLPAHS 152
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 153 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 204 SPNGKYILAATL-DNTLKLWD 223
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 23/236 (9%)
Query: 178 FATAGAQ---VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234
F GA+ + IW+ + + Q + S+ + P+ + L + + DR++ ++DLR
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLR 195
Query: 235 MSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSR------KLDEAKCVHMGH 288
+ + + +++ +P + A + D +DS +LD GH
Sbjct: 196 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255
Query: 289 ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR-----------EIYHTKRMQRVFC 337
+ +V + ++ G+ V+GS DR+++++ ++ E+ + V
Sbjct: 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315
Query: 338 VKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPE 393
V + + Y++SGS D + W K+ L +L + R AV N PE
Sbjct: 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLML--QGHRNSVISVAVANGSSLGPE 369
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 45/177 (25%)
Query: 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANED 267
SV F+P + LAT A DR I ++D+ RK++M
Sbjct: 128 SVCFSP-DGKFLATGAEDRLIRIWDIE----NRKIVM----------------------- 159
Query: 268 CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 327
+ GHE + +DY P+G + V+GS DRT+RI+ G+
Sbjct: 160 ----------------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 328 HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAV 384
+ V D Y+ +GS D +R+W ++ + L + + ++V
Sbjct: 204 SIEDGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 16/175 (9%)
Query: 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-------SGHQGAVRGLTVS 118
DG++ +A +P K +GS+D +R+WD V + +GH+ +V + +
Sbjct: 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 119 TDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLF 178
DG+ +VS D +VKLWN+ A Y+ F + D +
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNAN-NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 324
Query: 179 ATAGAQ---VDIWNHNRSQPINSFQWGTDTVISVRFNPA-----EPNVLATTASD 225
+G++ V W+ P+ Q ++VISV E NV AT + D
Sbjct: 325 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 379
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 113/306 (36%), Gaps = 61/306 (19%)
Query: 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD 130
C + + +L +G+ D IR+WDI NR+ V GH+ + L G LVS D
Sbjct: 130 CFSPDGKFLA---TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 131 CTVKLWNVPVA----TLXXXXXXXXXXXEPL-AVYVWKNSFWAVDHQWEGDLFATAGAQV 185
TV++W++ TL P Y+ S W+ + G V
Sbjct: 187 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLV 242
Query: 186 DIWNHNRSQPINSFQWG-TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM 244
+ R N G D+V SV F +V++ + DRS+ L++L+
Sbjct: 243 E-----RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQ---------- 286
Query: 245 RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC--VHMGHESAVMDIDYSPTGR 302
A N+ DS+ + C ++GH+ V+ + +
Sbjct: 287 -----------------NANNKS------DSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323
Query: 303 EFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY------VISGSDDTNL 356
++GS DR + + G + R V V + +S +GS D
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHR-NSVISVAVANGSSLGPEYNVFATGSGDCKA 382
Query: 357 RLWKAK 362
R+WK K
Sbjct: 383 RIWKYK 388
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 53 IFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAV 112
I R + L GH I + P+ K SGS D +R+WD+ + S G
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT 210
Query: 113 RGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143
DG+ + + D V++W+ L
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/272 (18%), Positives = 115/272 (42%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L + D +K+W +A
Sbjct: 23 AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 75
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 76 -WSSDS----NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D T++++ Y+ G+ + Y + ++ +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-Y 241
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 124
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K + L L A H
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 159
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 82
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTL 106
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + + H
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ A +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 39 EWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 95
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHS 152
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 153 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D ++ L+D
Sbjct: 204 SPNGKYILAATL-DNTLKLWD 223
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/272 (18%), Positives = 114/272 (41%), Gaps = 33/272 (12%)
Query: 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
+GH AV + S +G L S D +K+W +A
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA------- 75
Query: 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223
W+ D +L +A + IW+ + + + + + ++ V FNP + N++ + +
Sbjct: 76 -WSSD----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF-------TAANEDCNCYSYDSR 276
D S+ ++D++ + + + +P+ ++F +++ D C +D+
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHS-------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336
K + V + +SP G+ + + D ++++ Y+ G+ + Y + ++ +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK-Y 241
Query: 337 CV--KFSCDAS-YVISGSDDTNLRLWKAKASE 365
C+ FS +++SGS+D + +W + E
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH+ + D+ +S V+ S D+T++I+ + G+ + VFC F+ ++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNL 124
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381
++SGS D ++R+W K L L A H
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVH 159
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH AV + +SP G + S D+ I+I+ G+ + ++ + V +S D++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNL 82
Query: 347 VISGSDDTNLRLWKAKASEQLGVL 370
++S SDD L++W + + L L
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTL 106
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 40/221 (18%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108
K+ + + + L GH + + C NP SGS D +R+WD+ + H
Sbjct: 93 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLW---------------NVPVATLXXXXXXXXXX 153
V + + DG ++VS D ++W N PV+ +
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 154 XEPL--AVYVW--------------KNSFWAV--DHQWEGDLFATAGAQ---VDIWNHNR 192
L + +W KN + + + G + +G++ V IWN
Sbjct: 212 AATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQT 271
Query: 193 SQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLY 231
+ + Q TD VIS +P E N++A+ A +D++I L+
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 24/201 (11%)
Query: 40 EYVRALTAAKLEKIFAR---PFIGALDGHRDGISCMA--KNPNYLKGFFSGSMDGDIRLW 94
E++ + +A KL KI+ F + GH+ GIS +A + N L S S D +++W
Sbjct: 39 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL---VSASDDKTLKIW 95
Query: 95 DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXX 154
D+++ + + GH V + ++VS D +V++W+V
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC---LKTLPAHS 152
Query: 155 EPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-VRF 211
+P++ AV +G L ++ IW+ Q + + + +S V+F
Sbjct: 153 DPVS---------AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 212 NPAEPNVLATTASDRSITLYD 232
+P +LA T D + L+D
Sbjct: 204 SPNGKYILAATL-DNDLKLWD 223
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 113/278 (40%), Gaps = 66/278 (23%)
Query: 85 GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLX 144
GS D IR+++ V + H +R + V ++S D TVKLWN
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN------- 125
Query: 145 XXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTD 204
W+N+ WA++ +EG H
Sbjct: 126 -----------------WENN-WALEQTFEG--------------HEHF----------- 142
Query: 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPM--EPMN 260
V+ V FNP +P+ A+ DR++ ++ L S+P + + N + + P+ +P
Sbjct: 143 -VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201
Query: 261 FTAANE-DCNCYSYDSRKLDEAKCVHM--GHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317
TA+++ + Y ++ CV GH S V + PT ++GS D T++I+
Sbjct: 202 ITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 318 YNGGRSREIYHTKRMQRVFCVKF--SCDASYVISGSDD 353
+ + + + ++R +C+ + +Y+ SG D+
Sbjct: 257 SSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDN 293
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 15/185 (8%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFT 262
+D V + F+P EP VL T S R + L++ R + ++ P+ F
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGR-VELWNYETQVEVRSI-------QVTETPVRAGKFI 64
Query: 263 AANEDCNCYSYDSR------KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 316
A S D R E H + I PT ++GS D T++++
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 317 QYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPREQ 375
+ + E V CV F+ D S SG D +++W S L ++
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 376 RKHAY 380
R Y
Sbjct: 185 RGVNY 189
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST- 119
+GH + C+A NP F SG +D +++W + ++ ++ G RG+
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG--QSTPNFTLTTGQERGVNYVDY 192
Query: 120 ----DGRILVSCGTDCTVKLWN 137
D +++ D T+K+W+
Sbjct: 193 YPLPDKPYMITASDDLTIKIWD 214
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 287 GHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC--D 343
GHE VM + ++P F +G DRT++++ T + + V V + D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 344 ASYVISGSDDTNLRLWKAKASEQLGVL 370
Y+I+ SDD +++W + + L
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
+ S D I++WD + V GH V I++S D T+K+WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 113/278 (40%), Gaps = 66/278 (23%)
Query: 85 GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLX 144
GS D IR+++ V + H +R + V ++S D TVKLWN
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN------- 125
Query: 145 XXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTD 204
W+N+ WA++ +EG H
Sbjct: 126 -----------------WENN-WALEQTFEG--------------HEHF----------- 142
Query: 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPM--EPMN 260
V+ V FNP +P+ A+ DR++ ++ L S+P + + N + + P+ +P
Sbjct: 143 -VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201
Query: 261 FTAANE-DCNCYSYDSRKLDEAKCVHM--GHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317
TA+++ + Y ++ CV GH S V + PT ++GS D T++I+
Sbjct: 202 ITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 318 YNGGRSREIYHTKRMQRVFCVKF--SCDASYVISGSDD 353
+ + + + ++R +C+ + +Y+ SG D+
Sbjct: 257 SSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDN 293
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 15/185 (8%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFT 262
+D V + F+P EP VL T S R + L++ R + ++ P+ F
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGR-VELWNYETQVEVRSI-------QVTETPVRAGKFI 64
Query: 263 AANEDCNCYSYDSR------KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 316
A S D R E H + I PT ++GS D T++++
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 317 QYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPREQ 375
+ + E V CV F+ D S SG D +++W S L ++
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 376 RKHAY 380
R Y
Sbjct: 185 RGVNY 189
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST- 119
+GH + C+A NP F SG +D +++W + ++ ++ G RG+
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG--QSTPNFTLTTGQERGVNYVDY 192
Query: 120 ----DGRILVSCGTDCTVKLWN 137
D +++ D T+K+W+
Sbjct: 193 YPLPDKPYMITASDDLTIKIWD 214
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 287 GHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC--D 343
GHE VM + ++P F +G DRT++++ T + + V V + D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 344 ASYVISGSDDTNLRLWKAKASEQLGVL 370
Y+I+ SDD +++W + + L
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
+ S D I++WD + V GH V I++S D T+K+WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 113/278 (40%), Gaps = 66/278 (23%)
Query: 85 GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLX 144
GS D IR+++ V + H +R + V ++S D TVKLWN
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN------- 125
Query: 145 XXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTD 204
W+N+ WA++ +EG H
Sbjct: 126 -----------------WENN-WALEQTFEG--------------HEH------------ 141
Query: 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTK--SNSISWNPM--EPMN 260
V+ V FNP +P+ A+ DR++ ++ L S+P + + N + + P+ +P
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201
Query: 261 FTAANE-DCNCYSYDSRKLDEAKCVHM--GHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317
TA+++ + Y ++ CV GH S V + PT ++GS D T++I+
Sbjct: 202 ITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 318 YNGGRSREIYHTKRMQRVFCVKF--SCDASYVISGSDD 353
+ + + + ++R +C+ + +Y+ SG D+
Sbjct: 257 SSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDN 293
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST-- 119
+GH + C+A NP F SG +D +++W + ++ ++ G RG+
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG--QSTPNFTLTTGQERGVNYVDYY 193
Query: 120 ---DGRILVSCGTDCTVKLWNVP----VATL 143
D +++ D T+K+W+ VATL
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 15/185 (8%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFT 262
+D V + F+P EP VL TLY R+ + + +S ++ P+ F
Sbjct: 13 SDRVKGIDFHPTEPWVLT--------TLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 263 AANEDCNCYSYDSR------KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 316
A S D R E H + I PT ++GS D T++++
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 317 QYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPREQ 375
+ + E V CV F+ D S SG D +++W S L ++
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 376 RKHAY 380
R Y
Sbjct: 185 RGVNY 189
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 12/196 (6%)
Query: 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV 242
+V+IWN+ + S Q V + +F A N + + D I +++ + KV
Sbjct: 35 GRVEIWNYETQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFNY---NTGEKV 90
Query: 243 IMRTKS----NSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 298
+ SI+ +P +P + + +D ++ + GHE VM + ++
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPYVLSGS-DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 299 PTG-REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC--DASYVISGSDDTN 355
P F +G DRT++++ T + + V V + D Y+I+ SDD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 356 LRLWKAKASEQLGVLH 371
+++W + + L
Sbjct: 210 IKIWDYQTKSCVATLE 225
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
+ S D I++WD + V GH V I++S D T+K+WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 22/274 (8%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD 120
AL GH +S +A + S S D +RLWD+ T ++ GHQ V + S D
Sbjct: 71 ALTGHNHFVSDLALSQENCFAI-SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 121 GRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDH-QWEGDLFA 179
R ++S G + +KLWN+ + + ++ + + + Q FA
Sbjct: 130 NRQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 180 TAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYD-LRMS 236
+ G ++ +WN N Q +F+ V + +P +AT D+ + ++D L ++
Sbjct: 189 SVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLT 246
Query: 237 SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM---------- 286
P R+ + N I++NP + + A D ++ +A +
Sbjct: 247 YPQREFDAGSTINQIAFNP--KLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEG 304
Query: 287 --GHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318
G + ++ G++ G D IR F +
Sbjct: 305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH V D+ S ++ S+D+T+R++ G + + + V+ V FS D
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQ 132
Query: 347 VISGSDDTNLRLW 359
++S + ++LW
Sbjct: 133 ILSAGAEREIKLW 145
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 127/310 (40%), Gaps = 78/310 (25%)
Query: 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC 127
G+ C+ + + SG D I++WD +GH G+V L + D R++++
Sbjct: 135 GVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITG 189
Query: 128 GTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDI 187
+D TV++W+V
Sbjct: 190 SSDSTVRVWDV------------------------------------------------- 200
Query: 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA----RKVI 243
N + +N+ + V+ +RFN ++ T + DRSI ++D M+SP R+V+
Sbjct: 201 ---NTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWD--MASPTDITLRRVL 252
Query: 244 MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 303
+ ++ +++ + +A+ D +++ + + ++ GH+ + + Y R
Sbjct: 253 VGHRA-AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYRD--RL 308
Query: 304 FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363
V+GS D TIR++ G + + V C++F D ++SG+ D +++W A
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365
Query: 364 SEQLGVLHPR 373
+ L PR
Sbjct: 366 A-----LDPR 370
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117
F+ L+GH+ GI+C+ + SGS D IRLWDI + GH+ VR +
Sbjct: 288 FVRTLNGHKRGIACLQYRDRLV---VSGSSDNTIRLWDIECGACLRVLEGHEELVR--CI 342
Query: 118 STDGRILVSCGTDCTVKLWNVPVA 141
D + +VS D +K+W++ A
Sbjct: 343 RFDNKRIVSGAYDGKIKVWDLVAA 366
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 113/278 (40%), Gaps = 66/278 (23%)
Query: 85 GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLX 144
GS D IR+++ V + H +R + V ++S D TVKLWN
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN------- 125
Query: 145 XXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTD 204
W+N+ WA++ +EG H
Sbjct: 126 -----------------WENN-WALEQTFEG--------------HEH------------ 141
Query: 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTK--SNSISWNPM--EPMN 260
V+ V FNP +P+ A+ DR++ ++ L S+P + + N + + P+ +P
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201
Query: 261 FTAANE-DCNCYSYDSRKLDEAKCVHM--GHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317
TA+++ + Y ++ CV GH S V + PT ++GS D T++I+
Sbjct: 202 ITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 318 YNGGRSREIYHTKRMQRVFCVKF--SCDASYVISGSDD 353
+ + + + ++R +C+ + +Y+ SG D+
Sbjct: 257 SSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDN 293
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 15/185 (8%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFT 262
+D V + F+P EP VL T S R + L++ R + ++ P+ F
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGR-VELWNYETQVEVRSI-------QVTETPVRAGKFI 64
Query: 263 AANEDCNCYSYDSR------KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 316
A S D R E H + I PT ++GS D T++++
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 317 QYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPREQ 375
+ + E V CV F+ D S SG D +++W S L ++
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 376 RKHAY 380
R Y
Sbjct: 185 RGVNY 189
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST- 119
+GH + C+A NP F SG +D +++W + ++ ++ G RG+
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG--QSTPNFTLTTGQERGVNYVDY 192
Query: 120 ----DGRILVSCGTDCTVKLWN 137
D +++ D T+K+W+
Sbjct: 193 YPLPDKPYMITASDDLTIKIWD 214
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 287 GHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC--D 343
GHE VM + ++P F +G DRT++++ T + + V V + D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 344 ASYVISGSDDTNLRLWKAKASEQLGVLH 371
Y+I+ SDD +++W + + L
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLE 225
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
+ S D I++WD + V GH V I++S D T+K+WN
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 21/216 (9%)
Query: 121 GRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFAT 180
G +L SCG D +++W + + W G+ A+
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC---------GNYLAS 78
Query: 181 AG--AQVDIWNHNRS--QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236
A A IW N+ + + + + + V SV + P+ N+LAT + D+S+ ++++
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEE 137
Query: 237 SPARKV-IMRTKSNSIS---WNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM-GHESA 291
V ++ + + + W+P + + +A+ +D Y + D C + GHES
Sbjct: 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD-TVKLYREEEDDWVCCATLEGHEST 196
Query: 292 VMDIDYSPTGREFVTGSYDRTIRIF-QYNGGRSREI 326
V + + P+G+ + S DRT+RI+ QY G + +
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 116/322 (36%), Gaps = 57/322 (17%)
Query: 63 DGHRDGISCMAKNP--NYLKGFFSGSMDGDIRLW--DIANRRTVCQYSGHQGAVRGLTVS 118
+GH+ + +A +P NYL S S D +W + + V GH+ V+ + +
Sbjct: 58 EGHQRTVRKVAWSPCGNYLA---SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA 114
Query: 119 TDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLF 178
G +L +C D +V +W V + + VW S +L
Sbjct: 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS---------QELL 165
Query: 179 ATAGAQ--VDIWNHNRSQPI--NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234
A+A V ++ + + + TV S+ F+P+ LA+ + DR++ ++ R
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIW--R 222
Query: 235 MSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 294
P + + + SW + C + SR + D
Sbjct: 223 QYLPGNEQGVACSGSDPSWKCI-----------CTLSGFHSR--------------TIYD 257
Query: 295 IDYSPTGREFVTGSYDRTIRIFQYNGGRSREI--------YHTKRMQRVFCVKFSC-DAS 345
I + T D IR+FQ + + H Q V CV ++ +
Sbjct: 258 IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317
Query: 346 YVISGSDDTNLRLWKAKASEQL 367
+ S SDD + WK + E L
Sbjct: 318 LLASCSDDGEVAFWKYQRPEGL 339
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC--QYSGHQGAVRGLT 116
+ L+ H + + +P+ + S S D ++L+ VC GH+ V L
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 117 VSTDGRILVSCGTDCTVKLW 136
G+ L SC D TV++W
Sbjct: 202 FDPSGQRLASCSDDRTVRIW 221
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 128/314 (40%), Gaps = 42/314 (13%)
Query: 61 ALDGHRDG-ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
L GH D I+C+ N + SGS D +++W + + GH G V +
Sbjct: 113 VLKGHDDHVITCLQFCGNRI---VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 169
Query: 120 DGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFA 179
+ I++S TD T+K+WN E + S H E + +
Sbjct: 170 N--IIISGSTDRTLKVWNAETG-------------ECIHTLYGHTSTVRCMHLHEKRVVS 214
Query: 180 TA-GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP 238
+ A + +W+ Q ++ V +VR + + + A D + ++D P
Sbjct: 215 GSRDATLRVWDIETGQCLHVLM---GHVAAVRCVQYDGRRVVSGAYDFMVKVWD-----P 266
Query: 239 ARKVIMRT---KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM--GHESAVM 293
+ + T +N + + ++ + + D + +D ++ C+H GH+S
Sbjct: 267 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWD---VETGNCIHTLTGHQSLTS 323
Query: 294 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH--TKRMQRVFCVKFSCDASYVISGS 351
++ V+G+ D T++I+ G+ + K V C++F + ++VI+ S
Sbjct: 324 GMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSS 379
Query: 352 DDTNLRLWKAKASE 365
DD ++LW K E
Sbjct: 380 DDGTVKLWDLKTGE 393
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 83/216 (38%), Gaps = 39/216 (18%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS 118
I L GH + CM + K SGS D +R+WDI + + GH AVR V
Sbjct: 192 IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQ 246
Query: 119 TDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPL---AVYVWKNSF------WAV 169
DGR +VS D VK+W+ T L ++V S W V
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306
Query: 170 D-----HQWEGDLFATAGAQ--------------VDIWNHNRSQPINSFQWGT---DTVI 207
+ H G T+G + V IW+ Q + + Q V
Sbjct: 307 ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI 243
++FN N + T++ D ++ L+DL+ R ++
Sbjct: 367 CLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLV 399
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 77/158 (48%), Gaps = 16/158 (10%)
Query: 217 NVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSR 276
N++ + ++DR++ +++ + T +++ + + + D +D
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHT--STVRCMHLHEKRVVSGSRDATLRVWD-- 225
Query: 277 KLDEAKCVH--MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR--M 332
++ +C+H MGH +AV + Y GR V+G+YD ++++ + HT +
Sbjct: 226 -IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWD---PETETCLHTLQGHT 279
Query: 333 QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370
RV+ ++F D +V+SGS DT++R+W + + L
Sbjct: 280 NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 24/174 (13%)
Query: 222 TASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL--- 278
T++ R + L++ R+ S +R +R M AA C YD R++
Sbjct: 199 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA---VRCVQYDGRRVVSG 255
Query: 279 -----------DEAKCVH--MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE 325
+ C+H GH + V + + G V+GS D +IR++ G
Sbjct: 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNC-- 311
Query: 326 IYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHA 379
HT + + ++SG+ D+ +++W K + L L + + A
Sbjct: 312 -IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN----RRTVCQYSGHQGAVRGLTVSTD 120
H+ ++C+ N N++ + S DG ++LWD+ R V SG G V +++
Sbjct: 361 HQSAVTCLQFNKNFV---ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 417
Query: 121 GRILVSCGT 129
+++ + G+
Sbjct: 418 TKLVCAVGS 426
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE--IYHTKRMQRVFCVKFSCDA 344
GH+ V+ G V+GS D T++++ G+ + HT +
Sbjct: 116 GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW-----SSQMRD 169
Query: 345 SYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIV 398
+ +ISGS D L++W A+ E + L Y R HL E KR+V
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTL---------YGHTSTVRCMHLHE-KRVV 213
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 9/188 (4%)
Query: 177 LFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP-NVLATTASDRSITLYDLRM 235
L A+ +W+ Q + SF V+ + P+E N + D+ ++D+R
Sbjct: 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 236 SSPARKV-IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVM- 293
+ + NS+ + P F + ++D C YD R E ES +
Sbjct: 230 GQCVQAFETHESDVNSVRYYPSGDA-FASGSDDATCRLYDLRADREVAI--YSKESIIFG 286
Query: 294 --DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS 351
+D+S +GR G D TI ++ G I RV ++ S D + SGS
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE-NRVSTLRVSPDGTAFCSGS 345
Query: 352 DDTNLRLW 359
D LR+W
Sbjct: 346 WDHTLRVW 353
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 175 GDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYD 232
G+ F + G + +W+ Q + +F+ V SVR+ P+ + A+ + D + LYD
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYD 268
Query: 233 LRMSSPARKVIMRTK------SNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM 286
LR R+V + +K ++S+ ++ + F N D +D K +
Sbjct: 269 LRAD---REVAIYSKESIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVLKGSRVS-ILF 323
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIF 316
GHE+ V + SP G F +GS+D T+R++
Sbjct: 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 15/196 (7%)
Query: 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS 248
N N + S T+ + + F ++ +L T + D + L+D+ S + +
Sbjct: 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQIL-TASGDGTCALWDVE-SGQLLQSFHGHGA 197
Query: 249 NSISWN--PMEPMN-FTAANEDCNCYSYDSRKLDEAKCVHM--GHESAVMDIDYSPTGRE 303
+ + + P E N F + D +D R +CV HES V + Y P+G
Sbjct: 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS---GQCVQAFETHESDVNSVRYYPSGDA 254
Query: 304 FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF---CVKFSCDASYVISGSDDTNLRLWK 360
F +GS D T R++ R IY + + +F V FS + +G +D + +W
Sbjct: 255 FASGSDDATCRLYDLRADREVAIYSKESI--IFGASSVDFSLSGRLLFAGYNDYTINVWD 312
Query: 361 AKASEQLGVLHPREQR 376
++ +L E R
Sbjct: 313 VLKGSRVSILFGHENR 328
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 11/172 (6%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDL------RMSSPARKVIMRTKSNSISWNPMEPM 259
V++ + P+ +A D ++Y L M++ + V M T S M
Sbjct: 109 VMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 260 NFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP--TGREFVTGSYDRTIRIFQ 317
A+ D C +D + H GH + V+ +D +P TG FV+G D+ ++
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 318 YNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 369
G+ + + T V V++ SGSDD RL+ +A ++ +
Sbjct: 227 MRSGQCVQAFETHE-SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
F+G D I +WD+ V GH+ V L VS DG S D T+++W
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQ---GAVRGLTVSTDGRILVSCGTDCTVKLWNV 138
F SGS D RL+D+ R V YS GA + S GR+L + D T+ +W+V
Sbjct: 255 FASGSDDATCRLYDLRADREVAIYSKESIIFGA-SSVDFSLSGRLLFAGYNDYTINVWDV 313
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 58 FIGALDGHRDGISCMAKNPNYLKG-FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLT 116
+ + GH + C+ P+ F SG D +WD+ + + V + H+ V +
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 247
Query: 117 VSTDGRILVSCGTDCTVKLWNV 138
G S D T +L+++
Sbjct: 248 YYPSGDAFASGSDDATCRLYDL 269
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 15/179 (8%)
Query: 208 SVRFNPAEPNVLATTASDRSITLYDL----RMSSPARKVIMRTKSN--SISWNPMEPMNF 261
S ++ P + L T + D++ L+D+ R+S + ++ S+S N + F
Sbjct: 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF 221
Query: 262 TAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 321
+ + D +D R A + GHE + + + P G+ F TGS D T R+F G
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281
Query: 322 RSREIYHTK------RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE---QLGVLH 371
++Y+ + + V V FS + +G + + +W +E LG L
Sbjct: 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 20/172 (11%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPMEPMN 260
T V+S+ N N+ + + D ++ L+DLR++S A + + NS+ + P +
Sbjct: 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQR 263
Query: 261 FTAANEDCNCYSYDSRKLDEAKCVHM------GHESAVMDIDYSPTGREFVTG------- 307
F ++D C +D R + + + V + +S +GR G
Sbjct: 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323
Query: 308 SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 359
+D + N G + + R+ C+ S D S + +GS D NL++W
Sbjct: 324 VWDTLLAEMVLNLGTLQNSHE----GRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 18/225 (8%)
Query: 167 WAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR 226
W + W + A+ ++ +WN SQ ++ + V+ F P +V A D
Sbjct: 74 WTPEKNWI--VSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV-ACGGLDS 130
Query: 227 SITLYDLRMSS------PARKVIMRTK--SNSISWNPMEPMNFTAANEDCNCYSYDSRKL 278
+ ++++L + P +V+ K ++S + P + + D C +D
Sbjct: 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG 190
Query: 279 DEAKCVHM----GHESAVMDIDY-SPTGREFVTGSYDRTIRIFQYN-GGRSREIYHTKRM 332
GH + V+ + S F++GS D T+R++ R+ YH
Sbjct: 191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG 250
Query: 333 QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRK 377
+ VKF D +GSDD RL+ + QL V + R
Sbjct: 251 D-INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 105/285 (36%), Gaps = 74/285 (25%)
Query: 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-----SGHQGA 111
P L GH+ S P+ +GS D LWD+ + + + SGH
Sbjct: 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207
Query: 112 VRGLTV-STDGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVD 170
V L++ S + + +S D TV+LW++ + + + Y
Sbjct: 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITS------------RAVRTY---------- 245
Query: 171 HQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITL 230
H EGD + SV+F P + T + D + L
Sbjct: 246 HGHEGD-----------------------------INSVKFFP-DGQRFGTGSDDGTCRL 275
Query: 231 YDLRMS--------SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK 282
+D+R P R S++++ + F A + +CY +D+ L
Sbjct: 276 FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF-AGYSNGDCYVWDT--LLAEM 332
Query: 283 CVHMG-----HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 322
+++G HE + + S G TGS+D+ ++I+ ++G R
Sbjct: 333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 27/248 (10%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + +++S D T+K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 141 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWN 254
F G ++ I+ + ++A+ D I L++L + + + S++++
Sbjct: 188 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 255 PMEPMNFTAANEDCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 309
P A +S D + L D+ + G+ +A + + +S G+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYT 306
Query: 310 DRTIRIFQ 317
D IR++Q
Sbjct: 307 DNVIRVWQ 314
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH V D + G ++ S+D+T+R++ G + + + + V V AS
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASM 121
Query: 347 VISGSDDTNLRLWKAKA 363
+ISGS D +++W K
Sbjct: 122 IISGSRDKTIKVWTIKG 138
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN 265
V S+ + +PN+L + + D+ TL +++ +K + +S + ++ TA
Sbjct: 20 VTSLATSAGQPNLLLSASRDK--TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 77
Query: 266 EDCNCYSYDS--RKLDEAKCV----HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
S+D R D A +GH+S VM +D ++GS D+TI+++
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 320 GG-RSREIYHTKRMQRVFCV---KFSCDASYVISGSDDTNLRLW 359
G + + H + +V V K D+ +IS +D ++ W
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 27/248 (10%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + +++S D T+K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 141 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWN 254
F G ++ I+ + ++A+ D I L++L + + + S++++
Sbjct: 188 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 255 PMEPMNFTAANEDCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 309
P A +S D + L D+ + G+ A + + +S G+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 310 DRTIRIFQ 317
D IR++Q
Sbjct: 307 DNVIRVWQ 314
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 250 SISWNPMEPMNFTAANEDCNCYSY----DSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 305
S++ + +P +A+ D S+ D +K GH V D + G +
Sbjct: 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL 81
Query: 306 TGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363
+ S+D+T+R++ G + + + + V V AS +ISGS D +++W K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN 265
V S+ + +PN+L + + D+ TL +++ +K + +S + ++ TA
Sbjct: 20 VTSLATSAGQPNLLLSASRDK--TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 77
Query: 266 EDCNCYSYDS--RKLDEAKCV----HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
S+D R D A +GH+S VM +D ++GS D+TI+++
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 320 GG-RSREIYHTKRMQRVFCV---KFSCDASYVISGSDDTNLRLW 359
G + + H + +V V K D+ +IS +D ++ W
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 27/248 (10%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + +++S D T+K+W +
Sbjct: 75 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 134
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 135 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWN 254
F G ++ I+ + ++A+ D I L++L + + + S++++
Sbjct: 182 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 240
Query: 255 PMEPMNFTAANEDCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 309
P A +S D + L D+ + G+ A + + +S G+ G
Sbjct: 241 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 300
Query: 310 DRTIRIFQ 317
D IR++Q
Sbjct: 301 DNVIRVWQ 308
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 250 SISWNPMEPMNFTAANEDCNCYSY----DSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 305
S++ + +P +A+ D S+ D +K GH V D + G +
Sbjct: 16 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL 75
Query: 306 TGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363
+ S+D+T+R++ G + + + + V V AS +ISGS D +++W K
Sbjct: 76 SASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSRDKTIKVWTIKG 132
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN 265
V S+ + +PN+L + + D+ TL +++ +K + +S + ++ TA
Sbjct: 14 VTSLATSAGQPNLLLSASRDK--TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 71
Query: 266 EDCNCYSYDS--RKLDEAKCV----HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
S+D R D A +GH+S VM +D ++GS D+TI+++
Sbjct: 72 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
Query: 320 GG-RSREIYHTKRMQRVFCV---KFSCDASYVISGSDDTNLRLW 359
G + + H + +V V K D+ +IS +D ++ W
Sbjct: 132 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 175
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 27/248 (10%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + +++S D T+K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 141 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWN 254
F G ++ I+ + ++A+ D I L++L + + + S++++
Sbjct: 188 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 255 PMEPMNFTAANEDCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 309
P A +S D + L D+ + G+ A + + +S G+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 310 DRTIRIFQ 317
D IR++Q
Sbjct: 307 DNVIRVWQ 314
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 250 SISWNPMEPMNFTAANEDCNCYSY----DSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 305
S++ + +P +A+ D S+ D +K GH V D + G +
Sbjct: 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL 81
Query: 306 TGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363
+ S+D+T+R++ G + + + + V V AS +ISGS D +++W K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN 265
V S+ + +PN+L + + D+ TL +++ +K + +S + ++ TA
Sbjct: 20 VTSLATSAGQPNLLLSASRDK--TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 77
Query: 266 EDCNCYSYDS--RKLDEAKCV----HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
S+D R D A +GH+S VM +D ++GS D+TI+++
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 320 GG-RSREIYHTKRMQRVFCV---KFSCDASYVISGSDDTNLRLW 359
G + + H + +V V K D+ +IS +D ++ W
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 27/248 (10%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + +++S D T+K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 141 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWN 254
F G ++ I+ + ++A+ D I L++L + + + S++++
Sbjct: 188 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 255 PMEPMNFTAANEDCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 309
P A +S D + L D+ + G+ A + + +S G+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 310 DRTIRIFQ 317
D IR++Q
Sbjct: 307 DNVIRVWQ 314
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH V D + G ++ S+D+T+R++ G + + + + V V AS
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK-SDVMSVDIDKKASM 121
Query: 347 VISGSDDTNLRLWKAKA 363
+ISGS D +++W K
Sbjct: 122 IISGSRDKTIKVWTIKG 138
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN 265
V S+ + +PN+L + + D+ TL +++ +K + +S + ++ TA
Sbjct: 20 VTSLATSAGQPNLLLSASRDK--TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 77
Query: 266 EDCNCYSYDS--RKLDEAKCV----HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
S+D R D A +GH+S VM +D ++GS D+TI+++
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 320 GG-RSREIYHTKRMQRVFCV---KFSCDASYVISGSDDTNLRLW 359
G + + H + +V V K D+ +IS +D ++ W
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 20/221 (9%)
Query: 107 GHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
GHQ GL+ + + L+S D T+ LW++ AT V ++
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-ATPKEHRVIDAKNIFTGHTAVVEDV 241
Query: 166 FWAVDHQWEGDLFATAG--AQVDIW---NHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220
W + H+ LF + ++ IW N+N S+P ++ T V + FNP +LA
Sbjct: 242 AWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 221 TTASDRSITLYDLRMSSPARKVIMRTKSN--SISWNPMEPMNFTAANEDCNCYSYDSRKL 278
T ++D+++ L+DLR K + W+P ++ D + +D K+
Sbjct: 299 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 358
Query: 279 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
G E + D + P F+ G + I F +N
Sbjct: 359 --------GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 391
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 34/232 (14%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI----ANRRTVCQ---YSGHQGAVRG 114
L GH+ ++ NPN S S D I LWDI R + ++GH V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 115 LTVSTDGRILV-SCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQW 173
+ L S D + +W+ T + V SF + +
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWD----TRNNNTSKPSHTVDAHTAEVNCLSF----NPY 292
Query: 174 EGDLFATAGAQ--VDIWN-HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITL 230
+ AT A V +W+ N ++SF+ D + V+++P +LA++ +DR + +
Sbjct: 293 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 352
Query: 231 YDLRM-----------SSPARKVIMR----TKSNSISWNPMEPMNFTAANED 267
+DL P + + K + SWNP EP + +ED
Sbjct: 353 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 404
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
SGS DG +RLWD+ T ++ GH V + S+D R +VS D T+KLWN
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--REIYHTKRMQRVFCVKFSCDA 344
GH V D+ S G+ ++GS+D T+R++ G + R + HTK V V FS D
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK---DVLSVAFSSDN 140
Query: 345 SYVISGSDDTNLRLW 359
++SGS D ++LW
Sbjct: 141 RQIVSGSRDKTIKLW 155
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 63 DGHRDGISCMAKNPNYLKGFF-SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
+ H + +SC+ +PN S D +++W++AN + + GH G + +TVS DG
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 122 RILVSCGTDCTVKLWNV 138
+ S G D LW++
Sbjct: 228 SLCASGGKDGQAMLWDL 244
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRG----- 114
G L GH ++ +A P + S S D I +W + T Y Q A+RG
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--NYGIPQRALRGHSHFV 89
Query: 115 --LTVSTDGRILVSCGTDCTVKLWNVPVAT 142
+ +S+DG+ +S D T++LW++ T
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGT 119
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 286 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 345
+GH V+ + +S R+ V+GS D+TI+++ G + + V CV+FS ++S
Sbjct: 125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184
Query: 346 --YVISGSDDTNLRLW 359
++S D +++W
Sbjct: 185 NPIIVSCGWDKLVKVW 200
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
SGS DG +RLWD+ T ++ GH V + S+D R +VS D T+KLWN
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--REIYHTKRMQRVFCVKFSCDA 344
GH V D+ S G+ ++GS+D T+R++ G + R + HTK V V FS D
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK---DVLSVAFSSDN 117
Query: 345 SYVISGSDDTNLRLW 359
++SGS D ++LW
Sbjct: 118 RQIVSGSRDKTIKLW 132
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 63 DGHRDGISCMAKNPNYLKGFF-SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
+ H + +SC+ +PN S D +++W++AN + + GH G + +TVS DG
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 122 RILVSCGTDCTVKLWNV 138
+ S G D LW++
Sbjct: 205 SLCASGGKDGQAMLWDL 221
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRG----- 114
G L GH ++ +A P + S S D I +W + T Y Q A+RG
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--NYGIPQRALRGHSHFV 66
Query: 115 --LTVSTDGRILVSCGTDCTVKLWNVPVAT 142
+ +S+DG+ +S D T++LW++ T
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGT 96
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 286 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 345
+GH V+ + +S R+ V+GS D+TI+++ G + + V CV+FS ++S
Sbjct: 102 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 161
Query: 346 --YVISGSDDTNLRLW 359
++S D +++W
Sbjct: 162 NPIIVSCGWDKLVKVW 177
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 20/221 (9%)
Query: 107 GHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
GHQ GL+ + + L+S D T+ LW++ AT V ++
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-ATPKEHRVIDAKNIFTGHTAVVEDV 237
Query: 166 FWAVDHQWEGDLFATAG--AQVDIW---NHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220
W + H+ LF + ++ IW N+N S+P ++ T V + FNP +LA
Sbjct: 238 AWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 221 TTASDRSITLYDLRMSSPARKVIMRTKSN--SISWNPMEPMNFTAANEDCNCYSYDSRKL 278
T ++D+++ L+DLR K + W+P ++ D + +D K+
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Query: 279 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
G E + D + P F+ G + I F +N
Sbjct: 355 --------GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 34/232 (14%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI----ANRRTVCQ---YSGHQGAVRG 114
L GH+ ++ NPN S S D I LWDI R + ++GH V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 115 LTVSTDGRILV-SCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQW 173
+ L S D + +W+ T + V SF + +
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWD----TRNNNTSKPSHTVDAHTAEVNCLSF----NPY 288
Query: 174 EGDLFATAGAQ--VDIWN-HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITL 230
+ AT A V +W+ N ++SF+ D + V+++P +LA++ +DR + +
Sbjct: 289 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348
Query: 231 YDLRM-----------SSPARKVIMR----TKSNSISWNPMEPMNFTAANED 267
+DL P + + K + SWNP EP + +ED
Sbjct: 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 20/221 (9%)
Query: 107 GHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNS 165
GHQ GL+ + + L+S D T+ LW++ AT V ++
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-ATPKEHRVIDAKNIFTGHTAVVEDV 239
Query: 166 FWAVDHQWEGDLFATAG--AQVDIW---NHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220
W + H+ LF + ++ IW N+N S+P ++ T V + FNP +LA
Sbjct: 240 AWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 221 TTASDRSITLYDLRMSSPARKVIMRTKSN--SISWNPMEPMNFTAANEDCNCYSYDSRKL 278
T ++D+++ L+DLR K + W+P ++ D + +D K+
Sbjct: 297 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 356
Query: 279 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
G E + D + P F+ G + I F +N
Sbjct: 357 --------GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 389
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 34/232 (14%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI----ANRRTVCQ---YSGHQGAVRG 114
L GH+ ++ NPN S S D I LWDI R + ++GH V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 115 LTVSTDGRILV-SCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQW 173
+ L S D + +W+ T + V SF + +
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWD----TRNNNTSKPSHTVDAHTAEVNCLSF----NPY 290
Query: 174 EGDLFATAGAQ--VDIWN-HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITL 230
+ AT A V +W+ N ++SF+ D + V+++P +LA++ +DR + +
Sbjct: 291 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 350
Query: 231 YDLRM-----------SSPARKVIMR----TKSNSISWNPMEPMNFTAANED 267
+DL P + + K + SWNP EP + +ED
Sbjct: 351 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 402
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 27/248 (10%)
Query: 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--- 139
S S D +RLWD+A T ++ GH+ V + + ++S D T+K+W +
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC 140
Query: 140 VATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGD-----LFATAGAQVDIWNHNRSQ 194
+ATL L W + V ++ D + A V WN N+ Q
Sbjct: 141 LATL-------------LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWN 254
F G ++ I+ + ++A+ D I L++L + + + S++++
Sbjct: 188 IEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFS 246
Query: 255 PMEPMNFTAANEDCNCYSYDSRKL-DEAKCVHMGHESA----VMDIDYSPTGREFVTGSY 309
P A +S D + L D+ + G+ A + + +S G+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 310 DRTIRIFQ 317
D IR++Q
Sbjct: 307 DNVIRVWQ 314
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 250 SISWNPMEPMNFTAANEDCNCYSY----DSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 305
S++ + +P +A+ D S+ D +K GH V D + G +
Sbjct: 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL 81
Query: 306 TGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363
+ S+D+T+R++ G + + + V V AS +ISGS D +++W K
Sbjct: 82 SASWDKTLRLWDVATGETYQRF-VGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG 138
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRG 114
G L+GH ++ +A + S S D + W + V + GH V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 115 LTVSTDGRILVSCGTDCTVKLWNV 138
T++ DG +S D T++LW+V
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDV 94
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 12/164 (7%)
Query: 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN 265
V S+ + +PN+L + + D+ TL +++ +K + +S + ++ TA
Sbjct: 20 VTSLATSAGQPNLLLSASRDK--TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 77
Query: 266 EDCNCYSYDS--RKLDEAKCV----HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319
S+D R D A +GH+S V +D ++GS D+TI+++
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK 137
Query: 320 GG-RSREIYHTKRMQRVFCV---KFSCDASYVISGSDDTNLRLW 359
G + + H + +V V K D+ +IS +D ++ W
Sbjct: 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 65 HRDGISCMAKNPNY-LKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI 123
H D +SC+ +P+ SG D +++WD+A R V GH V +TVS DG +
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 124 LVSCGTDCTVKLWNV 138
S D +LW++
Sbjct: 211 CASSDKDGVARLWDL 225
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 239 ARKVIMRTKSNSI-SWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 297
A KV+ ++ ++ SW P N + +C+ Y R+L+ GH + V D+
Sbjct: 28 ATKVVSTSRDKTLLSWGP----NPDRHSSECS-YGLPDRRLE-------GHSAFVSDVAL 75
Query: 298 SPTGREFVTGSYDRTIRIFQYNGGRSREIY--HTKRMQRVFCVKFSCDASYVISGSDDTN 355
S G V+ S+D ++R++ G+ + + HTK V V FS D ++SG D
Sbjct: 76 SNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTK---DVLSVAFSPDNRQIVSGGRDNA 132
Query: 356 LRLWKAKA 363
LR+W K
Sbjct: 133 LRVWNVKG 140
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 277 KLDEAKCVH--MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR 334
L +C + +GH V+ + +SP R+ V+G D +R++ G +
Sbjct: 95 NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW 154
Query: 335 VFCVKF--SCDASYVISGSDDTNLRLW 359
V CV+F S DA ++SG D +++W
Sbjct: 155 VSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 104/263 (39%), Gaps = 21/263 (7%)
Query: 62 LDGHRDGIS--CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
L+GH +S ++ N N+ S S D +RLW++ N + ++ GH V + S
Sbjct: 63 LEGHSAFVSDVALSNNGNFA---VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 120 DGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFA 179
D R +VS G D +++WNV + + + +
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRF---------SPSLDAPVIV 170
Query: 180 TAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS 237
+ G V +W+ + + + T+ V SV +P + ++ A++ D L+DL
Sbjct: 171 SGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGE 229
Query: 238 PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD-EAKCVHMGHESAV---M 293
++ N I ++P A + + +++ + E H G + V +
Sbjct: 230 ALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECV 289
Query: 294 DIDYSPTGREFVTGSYDRTIRIF 316
I +S G +G D IR++
Sbjct: 290 SIAWSADGSTLYSGYTDNVIRVW 312
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 114/290 (39%), Gaps = 20/290 (6%)
Query: 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIA---NRRTVCQYS--GHQGAVRGLTVSTDGRI 123
+ C N + ++G G +++WDI+ N+ V Q +R + DG
Sbjct: 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Query: 124 LVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGA 183
L+ G T+ +W++ T A+ + +S +G+
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN------- 164
Query: 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI 243
+ +W+ + + FQ TD + + + L T D ++ +DLR ++
Sbjct: 165 -IAVWDLHNQTLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222
Query: 244 MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 303
++ S+ + P E N K D+ + +H+ HES V+ + ++ G+
Sbjct: 223 FTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPDKYQ-LHL-HESCVLSLKFAYCGKW 279
Query: 304 FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 353
FV+ D + ++ G S I+ +K V S D Y+++GS D
Sbjct: 280 FVSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVTGSGD 327
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH ID S G + TG D T+R + G R++ ++F + + +
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG--RQLQQHDFTSQIFSLGYCPTGEW 238
Query: 347 VISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAV 384
+ G + +N+ E L V P + + H + V
Sbjct: 239 LAVGMESSNV--------EVLHVNKPDKYQLHLHESCV 268
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 23/204 (11%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWD--IANRRTVCQYSGHQGAVRGLTVST 119
+ GH+ + C++ N + L SGS G I D IAN + + GH V GL +
Sbjct: 172 MAGHQARVGCLSWNRHVLS---SGSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCGLAWRS 227
Query: 120 DGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFA 179
DG L S G D V++W+ + + +A W W+ +L A
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA--------WC---PWQSNLLA 276
Query: 180 TAGA----QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA-SDRSITLYDLR 234
T G Q+ WN +N+ G+ V S+ ++P +++T D +++++
Sbjct: 277 TGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335
Query: 235 MSSPARKVIMRTKSNSISWNPMEP 258
S ++V + + ++ + P
Sbjct: 336 SSGLTKQVDIPAHDTRVLYSALSP 359
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 219 LATTASDRSITLYDLRMSSPA-RKVIMRTKSNSISWNPMEP--MNFTAANEDCNCYSYDS 275
LA+ +D + ++D R S P K +++W P + + D + +++
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291
Query: 276 RKLDEAKCVHMGHESAVMDIDYSPTGREFVT--GSYDRTIRIFQYNG-GRSREIYHTKRM 332
V G S V + +SP +E ++ G D + I+ Y+ G ++++
Sbjct: 292 ATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD 349
Query: 333 QRVFCVKFSCDASYVISGSDDTNLRLWK 360
RV S D + + + D NL+ W+
Sbjct: 350 TRVLYSALSPDGRILSTAASDENLKFWR 377
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 13/157 (8%)
Query: 174 EGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS--DRSIT 229
+G A+ G V IW+ S P + V +V + P + N+LAT D+ I
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287
Query: 230 LYDLRMSSPARKVIMRTKSNSISWNP-----MEPMNFTAANEDCNCYSYDSRKLDEAKCV 284
++ + V ++ S+ W+P M F + + + +SY S L + +
Sbjct: 288 FWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF--PDNNLSIWSYSSSGLTKQVDI 345
Query: 285 HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ-YNG 320
H++ V+ SP GR T + D ++ ++ Y+G
Sbjct: 346 -PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 36 EKAVEYVRALTAAKLEKIFARPFIGAL--DGHRDGISCMAKNPNYLKGFFSGSMDGDIRL 93
+K + + A T A++ + A + +L H I P+ +S S G +
Sbjct: 283 DKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342
Query: 94 WDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138
DI T YS +S DGRIL + +D +K W V
Sbjct: 343 VDIPAHDTRVLYSA---------LSPDGRILSTAASDENLKFWRV 378
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 20/94 (21%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR------TVCQYSG-------- 107
L GHR I ++ +P Y + S D ++LWD+ RR T+ Q++G
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDV--RRASGCLITLDQHNGKKSQAVES 239
Query: 108 ----HQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137
H G V GL ++DG L++ GTD ++LWN
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 121/333 (36%), Gaps = 51/333 (15%)
Query: 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--------RTVCQYSGHQGAVRGLT 116
H GI+ + P + SG DG I L+D+ N + VC V +
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 117 VST------DGRILVSCGTDCTVKLWNV-PVATLXXXXXXXXXXXEPLAVYVWKNSFWAV 169
V T D + S D T+K+W+ + T ++ K+ AV
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 170 DHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT 229
T G +V + + + Q +++V ++P +LAT ++D +
Sbjct: 162 ---------GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 230 LYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCN--CYSYDSRKL--------- 278
L+D+R +S +I + N +E N TA N N C++ D L
Sbjct: 213 LWDVRRASGC--LITLDQHNGKKSQAVESAN-TAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 279 -------DEAKCVHMGH--ESAVMDIDYSPT---GREFVTGSYDRTIRIFQYNGGRSREI 326
E V+ G ++ + ++ + EFV Y TI ++ G +
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM 329
Query: 327 YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 359
+ V C F + + SGS D N+ W
Sbjct: 330 LK-GHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 80/231 (34%), Gaps = 73/231 (31%)
Query: 208 SVRFNPAEPNVLATTASDRSITLYDLRMSS-----PARKV---------IMRTKSNSISW 253
++ P E + + SD I LYDL SS + V + R ++ W
Sbjct: 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW 107
Query: 254 NPMEPMNFTAANEDCNCYSYDSRKLDEA-------------------------------- 281
P + FT+++ D +D+ L A
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPK 167
Query: 282 ---------KCVHM--GHESAVMDIDYSP-TGREFVTGSYDRTIRIF------------- 316
C H+ GH ++ + +SP T S D ++++
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 317 QYNGGRSR--EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365
Q+NG +S+ E +T +V + F+ D ++++ D +RLW + E
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 99/242 (40%), Gaps = 28/242 (11%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVAT 142
SG + D+RL GHQ GL+ + + L+S D T+ LW++
Sbjct: 164 SGECNPDLRL------------RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVP 211
Query: 143 LXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN---HNRSQPIN 197
V ++ W + H+ LF + ++ IW+ +N S+P +
Sbjct: 212 KEGKVVDAKTIFTGHTAVV-EDVSWHLLHE---SLFGSVADDQKLMIWDTRSNNTSKPSH 267
Query: 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPME 257
S T V + FNP +LAT ++D+++ L+DL R + ++ S + +
Sbjct: 268 SVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL------RNLKLKLHSFESHKDEIF 321
Query: 258 PMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317
+ ++ NE S R+L+ +G E + D + P F+ G + I F
Sbjct: 322 QVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFS 381
Query: 318 YN 319
+N
Sbjct: 382 WN 383
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA---------NRRTVCQYSGHQGAV 112
L GH+ ++ NPN S S D I LWDI+ + +T+ ++GH V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI--FTGHTAVV 230
Query: 113 RGLTVSTDGRILV-SCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDH 171
++ L S D + +W+ T + V SF +
Sbjct: 231 EDVSWHLLHESLFGSVADDQKLMIWD----TRSNNTSKPSHSVDAHTAEVNCLSF----N 282
Query: 172 QWEGDLFATAGAQ--VDIWN-HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSI 228
+ + AT A V +W+ N ++SF+ D + V+++P +LA++ +DR +
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 229 TLYDLRM-----------SSPARKVIMR----TKSNSISWNPMEPMNFTAANED 267
++DL P + + K + SWNP EP + +ED
Sbjct: 343 NVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 396
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 95/244 (38%), Gaps = 32/244 (13%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVAT 142
SG + D+RL GHQ GL+ +++ L+S D TV LW++
Sbjct: 166 SGECNPDLRL------------RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP 213
Query: 143 LXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN---HNRSQPIN 197
+ V ++ W + H+ LF + ++ IW+ + S+P +
Sbjct: 214 KEGKIVDAKAIFTGHSAVV-EDVAWHLLHE---SLFGSVADDQKLXIWDTRSNTTSKPSH 269
Query: 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSN--SISWNP 255
T V + FNP +LAT ++D+++ L+DLR K + W+P
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 256 MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 315
NE S R+L+ +G E + D + P F+ G + I
Sbjct: 330 H--------NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 316 FQYN 319
F +N
Sbjct: 382 FSWN 385
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 177 LFATAGAQ--VDIWN-HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDL 233
+ AT A V +W+ N +++F+ D + V ++P +LA++ +DR + ++DL
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 234 RM-----------SSPARKVIMR----TKSNSISWNPMEPMNFTAANED 267
P + + K + SWNP EP + +ED
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 25/174 (14%)
Query: 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPAR-------KVIMRTKSN-----SISWNPM 256
R+ P P+++AT + ++D PA+ +R + + +SWN
Sbjct: 132 ARYXPQNPHIIATKTPSSDVLVFDY-TKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSN 190
Query: 257 EPMNFTAANEDCNCYSYD------SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY- 309
+ +A++D +D K+ +AK + GH + V D+ + E + GS
Sbjct: 191 LSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLL-HESLFGSVA 249
Query: 310 -DRTIRIFQYNGGRSREIYH--TKRMQRVFCVKFSCDASYVI-SGSDDTNLRLW 359
D+ + I+ + + H V C+ F+ + +++ +GS D + LW
Sbjct: 250 DDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD 120
+LD I +A +P+ K SG++DG I ++DIA + + GH +R LT S D
Sbjct: 159 SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 121 GRILVSCGTDCTVKLWNVPVATL 143
++LV+ D +K+++V A L
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANL 240
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 135/309 (43%), Gaps = 36/309 (11%)
Query: 65 HRDGISCMAKNPNYLKG---FFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVST 119
H D I +A N + +GS+D +++W + R Q+S GHQ V + +S
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 120 DGRILVSCGTDCTVKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFA 179
I S D ++LW++ + V W +F + D Q+
Sbjct: 91 TLPIAASSSLDAHIRLWDLE-------NGKQIKSIDAGPVDAWTLAF-SPDSQYLAT--G 140
Query: 180 TAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239
T +V+I+ + S ++S+ ++P + LA+ A D I ++D+
Sbjct: 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATG--- 196
Query: 240 RKVIMRTKSNSISWNPMEPMNFT-------AANEDCNCYSYDSRKLDEAKCVHMGHESAV 292
K++ + +++ P+ + F+ A++D YD + + A + GH S V
Sbjct: 197 -KLLHTLEGHAM---PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGHASWV 251
Query: 293 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT--KRMQRVFCVKFSCDASYVISG 350
+++ + P FV+ S D++++++ +R HT +V+ VK++ + S ++S
Sbjct: 252 LNVAFCPDDTHFVSSSSDKSVKVWDVG---TRTCVHTFFDHQDQVWGVKYNGNGSKIVSV 308
Query: 351 SDDTNLRLW 359
DD + ++
Sbjct: 309 GDDQEIHIY 317
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST 119
G L GH + +A P+ F S S D +++WD+ R V + HQ V G+ +
Sbjct: 242 GTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300
Query: 120 DGRILVSCGTDCTVKLWNVPV 140
+G +VS G D + +++ P+
Sbjct: 301 NGSKIVSVGDDQEIHIYDCPI 321
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 95/244 (38%), Gaps = 32/244 (13%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVAT 142
SG + D+RL GHQ GL+ +++ L+S D TV LW++
Sbjct: 166 SGECNPDLRL------------RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP 213
Query: 143 LXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN---HNRSQPIN 197
+ V ++ W + H+ LF + ++ IW+ + S+P +
Sbjct: 214 KEGKIVDAKAIFTGHSAVV-EDVAWHLLHE---SLFGSVADDQKLMIWDTRSNTTSKPSH 269
Query: 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSN--SISWNP 255
T V + FNP +LAT ++D+++ L+DLR K + W+P
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 256 MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 315
NE S R+L+ +G E + D + P F+ G + I
Sbjct: 330 H--------NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 316 FQYN 319
F +N
Sbjct: 382 FSWN 385
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 177 LFATAGAQ--VDIWN-HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDL 233
+ AT A V +W+ N +++F+ D + V ++P +LA++ +DR + ++DL
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 234 RM-----------SSPARKVIMR----TKSNSISWNPMEPMNFTAANED 267
P + + K + SWNP EP + +ED
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 398
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 25/174 (14%)
Query: 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPAR-------KVIMRTKSN-----SISWNPM 256
R+ P P+++AT + ++D PA+ +R + + +SWN
Sbjct: 132 ARYMPQNPHIIATKTPSSDVLVFDY-TKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSN 190
Query: 257 EPMNFTAANEDCNCYSYD------SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY- 309
+ +A++D +D K+ +AK + GH + V D+ + E + GS
Sbjct: 191 LSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLL-HESLFGSVA 249
Query: 310 -DRTIRIFQYNGGRSREIYHT--KRMQRVFCVKFSCDASYVI-SGSDDTNLRLW 359
D+ + I+ + + H V C+ F+ + +++ +GS D + LW
Sbjct: 250 DDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 110/273 (40%), Gaps = 47/273 (17%)
Query: 74 KNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT- 132
K NYL G+ +++LWD+ ++ + + H V L+ ++ ++S G+
Sbjct: 157 KEGNYLA---VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGH 210
Query: 133 -----VKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--V 185
V++ VATL WA D G A+ G V
Sbjct: 211 IHHHDVRVAEHHVATLSGHSQEVCGLR------------WAPD----GRHLASGGNDNLV 254
Query: 186 DIWNHNRSQ----PINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLYDLRMSSPA 239
++W + P+ +F V +V + P + NVLAT SDR I ++++ +
Sbjct: 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Query: 240 RKVIMRTKSNSISWNPMEPMNFTA---ANEDCNCYSYDSR-KLDEAKCVHMGHESAVMDI 295
V ++ SI W+P + A + Y + K+ E K GH S V+ +
Sbjct: 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK----GHTSRVLSL 370
Query: 296 DYSPTGREFVTGSYDRTIRI---FQYNGGRSRE 325
SP G + + D T+R+ F+ + R RE
Sbjct: 371 TMSPDGATVASAAADETLRLWRCFELDPARRRE 403
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRT-KSNSISWNPMEPMNFTAANEDCNCYSY 273
E N LA S + L+D++ R + + + S+SWN ++ + + + +
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI---LSSGSRSGHIHHH 214
Query: 274 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI------Y 327
D R + GH V + ++P GR +G D + ++ G +
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Query: 328 HTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 359
H ++ V + + G+ D ++R+W
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGS--MDGDIRLWDIANRRTVCQYSGHQGAVRGLT 116
+ A+D H + + +P+Y K SG + +W V + GH V LT
Sbjct: 314 LSAVDAHSQ-VCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 371
Query: 117 VSTDGRILVSCGTDCTVKLW 136
+S DG + S D T++LW
Sbjct: 372 MSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 110/273 (40%), Gaps = 47/273 (17%)
Query: 74 KNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT- 132
K NYL G+ +++LWD+ ++ + + H V L+ ++ ++S G+
Sbjct: 168 KEGNYLA---VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGH 221
Query: 133 -----VKLWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--V 185
V++ VATL WA D G A+ G V
Sbjct: 222 IHHHDVRVAEHHVATLSGHSQEVCGLR------------WAPD----GRHLASGGNDNLV 265
Query: 186 DIWNHNRSQ----PINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLYDLRMSSPA 239
++W + P+ +F V +V + P + NVLAT SDR I ++++ +
Sbjct: 266 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 240 RKVIMRTKSNSISWNPMEPMNFTA---ANEDCNCYSYDSR-KLDEAKCVHMGHESAVMDI 295
V ++ SI W+P + A + Y + K+ E K GH S V+ +
Sbjct: 326 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK----GHTSRVLSL 381
Query: 296 DYSPTGREFVTGSYDRTIRI---FQYNGGRSRE 325
SP G + + D T+R+ F+ + R RE
Sbjct: 382 TMSPDGATVASAAADETLRLWRCFELDPARRRE 414
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRT-KSNSISWNPMEPMNFTAANEDCNCYSY 273
E N LA S + L+D++ R + + + S+SWN ++ + + + +
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI---LSSGSRSGHIHHH 225
Query: 274 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI------Y 327
D R + GH V + ++P GR +G D + ++ G +
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Query: 328 HTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 359
H ++ V + + G+ D ++R+W
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGS--MDGDIRLWDIANRRTVCQYSGHQGAVRGLT 116
+ A+D H + + +P+Y K SG + +W V + GH V LT
Sbjct: 325 LSAVDAHSQ-VCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 382
Query: 117 VSTDGRILVSCGTDCTVKLW 136
+S DG + S D T++LW
Sbjct: 383 MSPDGATVASAAADETLRLW 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLYDLRMSSPARKVIMRTKSNSIS 252
P+ +F V +V + P + NVLAT SDR I ++++ + V ++ SI
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 247
Query: 253 WNPMEPMNFTA---ANEDCNCYSYDSR-KLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 308
W+P + A + Y + K+ E K GH S V+ + SP G + +
Sbjct: 248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK----GHTSRVLSLTMSPDGATVASAA 303
Query: 309 YDRTIRIFQ 317
D T+R+++
Sbjct: 304 ADETLRLWR 312
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 10/168 (5%)
Query: 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRT-KSNSISWNPMEPMNFTAANEDCNCYSY 273
E N LA S + L+D++ R + + + S+SWN ++ + + + +
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI---LSSGSRSGHIHHH 134
Query: 274 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI------Y 327
D R + GH V + ++P GR +G D + ++ G +
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Query: 328 HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQ 375
H ++ V + + G+ D ++R+W + L + Q
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS--MDGDIRLWDIANRRTVCQYS 106
++ + + + A+D H + + +P+Y K SG + +W V +
Sbjct: 224 RIWNVCSGACLSAVDAHSQ-VCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELK 281
Query: 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
GH V LT+S DG + S D T++LW
Sbjct: 282 GHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 255 PMEPMNFTAANE---DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR 311
P P NF A D C+ K M H V+D+ +S G + T S D+
Sbjct: 50 PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108
Query: 312 TIRIFQYNGGRSREI-YHTKRMQRVFCVK---FSCDASYVISGSDDTNLRLWKAKASEQL 367
T +++ + ++ +I H ++ + +K +SC V++GS D L+ W ++S +
Sbjct: 109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSC----VMTGSWDKTLKFWDTRSSNPM 164
Query: 368 GVLHPREQ 375
VL E+
Sbjct: 165 MVLQLPER 172
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 67 DGISCMAKNPNYLKGFF--SGSMDGDIRLWDIANRRTVCQYSG--HQGAVRGLTVSTDGR 122
D I C++ +P L G F +GS D+R W++ + + H G V + S DG
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 123 ILVSCGTDCTVKLWNV 138
+ + D T K+W++
Sbjct: 100 KVFTASCDKTAKMWDL 115
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117
F+G L GH + ++ + N + SGS D + +WD+A + + SGH +
Sbjct: 262 FVGVLRGHXASVRTVSGHGNIV---VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY 318
Query: 118 STDGRILVSCGTDCTVKLWNVPVATL 143
+ + +S D T+++W++ L
Sbjct: 319 DHERKRCISASXDTTIRIWDLENGEL 344
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY--HTKRMQRVFCVKFSCDA 344
GH+ V + Y+ G V+GS DRT+R++ G ++ H ++ + V++ +
Sbjct: 160 GHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NI 217
Query: 345 SYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAY 380
Y+++GS D L +WK + P +H Y
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSV----PDHGEEHDY 249
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 56 RPFIGALDGHRDGISCMAKNPNYLKG--FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVR 113
+ F+ L GH G+ + Y G SGS D +R+WDI + GH VR
Sbjct: 152 KKFLLQLSGHDGGVWALK----YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 207
Query: 114 GLTVSTDGRI--LVSCGTDCTVKLWNVP 139
L + I +V+ D T+ +W +P
Sbjct: 208 CLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH D I + K S S D IR+WD+ N GH V L +S
Sbjct: 306 LSGHTDRIYSTIYDHER-KRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD-- 362
Query: 122 RILVSCGTDCTVKLWN 137
+ LVS D +++ W+
Sbjct: 363 KFLVSAAADGSIRGWD 378
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH ++V + S G V+GSYD T+ ++ + I + R++ + +
Sbjct: 268 GHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYIL-SGHTDRIYSTIYDHERKR 324
Query: 347 VISGSDDTNLRLWKAKASE 365
IS S DT +R+W + E
Sbjct: 325 CISASXDTTIRIWDLENGE 343
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/263 (19%), Positives = 111/263 (42%), Gaps = 26/263 (9%)
Query: 80 KGFFSGSMDGDIRLWDIANRRTV-----CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVK 134
KG S G + LW+I + ++ +Y H V+ L+V +DG VS G D +VK
Sbjct: 106 KGILVASDSGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGKDFSVK 164
Query: 135 LWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR 192
+W++ + +A K++ +F + G ++ +W+ +
Sbjct: 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDT-----------IFLSCGEDGRILLWDTRK 213
Query: 193 SQPINSFQW-GTDTV-ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS-N 249
+P + +DT+ SV ++P + + A +++L +++ A+ + +++
Sbjct: 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNIT 273
Query: 250 SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTGS 308
++++ + +EDC D+ + + + H V + +SP +F T
Sbjct: 274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFR--DLSHRDFVTGVAWSPLDHSKFTTVG 331
Query: 309 YDRTIRIFQY-NGGRSREIYHTK 330
+D + + GR+ + TK
Sbjct: 332 WDHKVLHHHLPSEGRTENLIATK 354
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117
F+G L GH + ++ + N + SGS D + +WD+A + + SGH +
Sbjct: 262 FVGVLRGHMASVRTVSGHGNIV---VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318
Query: 118 STDGRILVSCGTDCTVKLWNVPVATL 143
+ + +S D T+++W++ L
Sbjct: 319 DHERKRCISASMDTTIRIWDLENGEL 344
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY--HTKRMQRVFCVKFSCDA 344
GH+ V + Y+ G V+GS DRT+R++ G ++ H ++ + V++ +
Sbjct: 160 GHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NI 217
Query: 345 SYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAY 380
Y+++GS D L +WK + P +H Y
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSV----PDHGEEHDY 249
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 56 RPFIGALDGHRDGISCMAKNPNYLKG--FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVR 113
+ F+ L GH G+ + Y G SGS D +R+WDI + GH VR
Sbjct: 152 KKFLLQLSGHDGGVWALK----YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 207
Query: 114 GLTVSTDGRI--LVSCGTDCTVKLWNVP 139
L + I +V+ D T+ +W +P
Sbjct: 208 CLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121
L GH D I + K S SMD IR+WD+ N + GH V L +S
Sbjct: 306 LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-- 362
Query: 122 RILVSCGTDCTVKLWN 137
+ LVS D +++ W+
Sbjct: 363 KFLVSAAADGSIRGWD 378
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346
GH ++V + S G V+GSYD T+ ++ + I + R++ + +
Sbjct: 268 GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR 324
Query: 347 VISGSDDTNLRLWKAKASEQLGVLH 371
IS S DT +R+W + E + L
Sbjct: 325 CISASMDTTIRIWDLENGELMYTLQ 349
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 280 EAKCVHM--GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFC 337
+ KC+++ GH + Y + ++ S D TIRI+ G E+ +T +
Sbjct: 299 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---ELMYTLQGHTALV 355
Query: 338 VKFSCDASYVISGSDDTNLRLWKA 361
+++S + D ++R W A
Sbjct: 356 GLLRLSDKFLVSAAADGSIRGWDA 379
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 114/315 (36%), Gaps = 36/315 (11%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYS-------GHQGAVRGLTVSTDGRILVSCGTDCTVK 134
F S DG I L++ + + H G+V GLT S DG + S D T+K
Sbjct: 205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 264
Query: 135 LWNVPVATLXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQ 194
+WNV + + +W + + +A ++ N
Sbjct: 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTK---------QALVSISANGFINFVNPELGS 315
Query: 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS-----PARKVIMRTKSN 249
I+ ++G + I+ + A+ L + ++ I +D+ P M T
Sbjct: 316 -IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 374
Query: 250 SISWNPMEPMNFTAANED-CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 308
+ S + FT + +D +D +K V S + + S G V
Sbjct: 375 TTSKGDL----FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 430
Query: 309 YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK---AKASE 365
Y I Y+ G+ E+ + CV S D +V G D+ + ++K A SE
Sbjct: 431 YK---HIAIYSHGKLTEVPISYNSS---CVALSNDKQFVAVGGQDSKVHVYKLSGASVSE 484
Query: 366 QLGVLHPREQRKHAY 380
++HP E A+
Sbjct: 485 VKTIVHPAEITSVAF 499
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI--ANRRTVCQYSGHQGAVRGLTVSTDGR 122
H ++C++ +P+ ++ +GS+D + +W++ + + H + + +
Sbjct: 535 HTAKVACVSWSPDNVR-LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 593
Query: 123 ILVSCGTDCTVKLWNVP 139
+VS G D +K WNVP
Sbjct: 594 TIVSAGQDSNIKFWNVP 610
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTK-SNSISWNPMEPMNFTAANE 266
SV F P+ P + + + D ++ +++ TK +S+ +NP + F +
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTGG 210
Query: 267 DCNCYSY---DSRK---LDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317
D Y D K ++ ++ H +V + +SP G + + S D+TI+I+
Sbjct: 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 268 CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 327
+ Y + E K + H + + + +S G V + D++ ++ Y+ + E+
Sbjct: 472 VHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLV--ATDQSRKVIPYSVANNFELA 527
Query: 328 HTK----RMQRVFCVKFSCDASYVISGSDDTNLRLW 359
HT +V CV +S D + +GS D ++ +W
Sbjct: 528 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 52 KIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111
+I + G L GH IS + N K S S DG +R+W N + + GH +
Sbjct: 233 QITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS 291
Query: 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143
+ + D ++ +SC D +V+LW++ TL
Sbjct: 292 IVSASWVGDDKV-ISCSMDGSVRLWSLKQNTL 322
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 82/199 (41%), Gaps = 13/199 (6%)
Query: 177 LFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236
L+ GA +++ N +R+ PI S +W D + + +L S + ++L+ +
Sbjct: 134 LWNKTGALLNVLNFHRA-PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET 192
Query: 237 SPARKVIMRTKSNS-----ISWNPMEPMNFTAANEDCNCYSYD-SRKLDEAKCVHMGHES 290
+ + + W ++ F + Y + K K + GH
Sbjct: 193 GGSSINAENHSGDGSLGVDVEW--VDDDKFVIPGPKGAIFVYQITEKTPTGKLI--GHHG 248
Query: 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 350
+ ++++ T + ++ S D T+RI+ G S+ ++ Q + + D VIS
Sbjct: 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGD-DKVISC 306
Query: 351 SDDTNLRLWKAKASEQLGV 369
S D ++RLW K + L +
Sbjct: 307 SMDGSVRLWSLKQNTLLAL 325
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 30/194 (15%)
Query: 219 LATTASDRSITLYDLRMSSPARKVIMRTKSN---SISW-NPMEPMNFTAANEDCNCYSY- 273
LAT +SDRS+ ++D+R +R ++W +PM + + D +
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 274 DSRKLDEAKCVHMGHESAVMDIDYSP--TGREFVTGSYDRTIRIFQYNGGRSREIYHTKR 331
+ E H GH+S+V + ++P G GS D I + Y G E+
Sbjct: 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN 147
Query: 332 MQRVFCVKFSCDASYV-------------------ISGSDDTNLRLWKAKASEQLGVLHP 372
+ C S + V SG D ++LWK + Q
Sbjct: 148 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW----K 203
Query: 373 REQRKHAYHEAVKN 386
EQ+ A+ + V++
Sbjct: 204 EEQKLEAHSDWVRD 217
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLW---DIANRRTVCQYSGHQGAVR--- 113
G+L H G + PNY+K F SG D I+LW + + + H VR
Sbjct: 165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219
Query: 114 -----GLTVST------DGRILVSCGTDCTVKLWN 137
GL ST DGR+ + D + W+
Sbjct: 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS 254
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--- 120
GH + I+ + +P S S D +RLW+I V + G +G R +S D
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDL 166
Query: 121 -GRILVSCGTDCTVKLWNV 138
G ++SCG D ++KLW +
Sbjct: 167 LGEKIMSCGMDHSLKLWRI 185
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 167 WAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W D L A AG++ + I N Q I + + + ++F+P +PN+L + +
Sbjct: 72 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 131
Query: 225 DRSITLYDLRMSS 237
D ++ L++++ +
Sbjct: 132 DHALRLWNIQTDT 144
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--- 120
GH + I+ + +P S S D +RLW+I V + G +G R +S D
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDL 207
Query: 121 -GRILVSCGTDCTVKLWNV 138
G ++SCG D ++KLW +
Sbjct: 208 LGEKIMSCGMDHSLKLWRI 226
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 167 WAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W D L A AG++ + I N Q I + + + ++F+P +PN+L + +
Sbjct: 113 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 172
Query: 225 DRSITLYDLRMSS 237
D ++ L++++ +
Sbjct: 173 DHALRLWNIQTDT 185
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--- 120
GH + I+ + +P S S D +RLW+I V + G +G R +S D
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDL 171
Query: 121 -GRILVSCGTDCTVKLWNV 138
G ++SCG D ++KLW +
Sbjct: 172 LGEKIMSCGMDHSLKLWRI 190
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 167 WAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W D L A AG++ + I N Q I + + + ++F+P +PN+L + +
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 136
Query: 225 DRSITLYDLRMSS 237
D ++ L++++ +
Sbjct: 137 DHALRLWNIQTDT 149
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--- 120
GH + I+ + +P S S D +RLW+I V + G +G R +S D
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDL 170
Query: 121 -GRILVSCGTDCTVKLWNV 138
G ++SCG D ++KLW +
Sbjct: 171 LGEKIMSCGMDHSLKLWRI 189
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 167 WAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W D L A AG++ + I N Q I + + + ++F+P +PN+L + +
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 135
Query: 225 DRSITLYDLRMSS 237
D ++ L++++ +
Sbjct: 136 DHALRLWNIQTDT 148
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--- 120
GH + I+ + +P S S D +RLW+I V + G +G R +S D
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDL 170
Query: 121 -GRILVSCGTDCTVKLWNV 138
G ++SCG D ++KLW +
Sbjct: 171 LGEKIMSCGMDHSLKLWRI 189
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 167 WAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224
W D L A AG++ + I N Q I + + + ++F+P +PN+L + +
Sbjct: 76 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK 135
Query: 225 DRSITLYDLRMSS 237
D ++ L++++ +
Sbjct: 136 DHALRLWNIQTDT 148
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 8/174 (4%)
Query: 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVAT 142
SGS D I++WD+A + + Y H V + S + +SC D + LW+
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
Query: 143 LXXXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWG 202
P ++ W Q E +F V + + + + S
Sbjct: 204 PASQIGCSAPGYLPTSL-AWH------PQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH 256
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPM 256
+ V + F+P LA+ + D S+ + D +S R R +W+P+
Sbjct: 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPL 310
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Query: 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM 244
+ +W+ + ++S++ V V +P + +V + + D I L+D R PA ++
Sbjct: 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC 210
Query: 245 RTKS---NSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG--HESAVMDIDYSP 299
S++W+P + F +E+ D++ CV H V + +SP
Sbjct: 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS---TSCVLSSAVHSQCVTGLVFSP 267
Query: 300 TGREFVTG-SYDRTIRIF 316
F+ S D ++ +
Sbjct: 268 HSVPFLASLSEDCSLAVL 285
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 15 RERSQDLQRVYHNYDPNLRPQEK----AVEYVRALTAAK---LEKIFARPFIGALDGH-- 65
E ++ Y N D NL ++ + R + A K EK+ + + LDGH
Sbjct: 19 EENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDF 78
Query: 66 ------RDGISCMAKNPNY---------LKGFFSGSMDGDIRLWD--IANRRTVCQYSGH 108
RDG S M K +Y ++ F G+ +GDI++ D +R + Q H
Sbjct: 79 LFNTIIRDG-SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ--AH 135
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138
+ L G L+S D +K+W+V
Sbjct: 136 VSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 80 KGFFSGSMDGDIRLW---DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
+ S S D +++W D +N RT+ GH+ V + + GR ++S D T++LW
Sbjct: 149 EALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Query: 137 NVPVAT 142
T
Sbjct: 206 ECGTGT 211
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 302 REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361
R F+ G+ + I++ N REI + + +KF +IS S D L++W
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREI-DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Query: 362 K 362
K
Sbjct: 166 K 166
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 286 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR 331
+GH + V DI GR ++ S D TIR+++ G + ++ K
Sbjct: 175 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 220
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 15 RERSQDLQRVYHNYDPNLRPQEK----AVEYVRALTAAK---LEKIFARPFIGALDGH-- 65
E ++ Y N D NL ++ + R + A K EK+ + + LDGH
Sbjct: 22 EENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDF 81
Query: 66 ------RDGISCMAKNPNY---------LKGFFSGSMDGDIRLWD--IANRRTVCQYSGH 108
RDG S M K +Y ++ F G+ +GDI++ D +R + Q H
Sbjct: 82 LFNTIIRDG-SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ--AH 138
Query: 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138
+ L G L+S D +K+W+V
Sbjct: 139 VSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 80 KGFFSGSMDGDIRLW---DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
+ S S D +++W D +N RT+ GH+ V + + GR ++S D T++LW
Sbjct: 152 EALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Query: 137 NVPVAT 142
T
Sbjct: 209 ECGTGT 214
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 302 REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361
R F+ G+ + I++ N REI + + +KF +IS S D L++W
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREI-DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Query: 362 K 362
K
Sbjct: 169 K 169
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 286 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR 331
+GH + V DI GR ++ S D TIR+++ G + ++ K
Sbjct: 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 223
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141
F S S DG I+L D + Y GH+ V + + +G I VSCG D TV++W+
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDI-VSCGEDRTVRIWSKENG 256
Query: 142 TL 143
+L
Sbjct: 257 SL 258
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 57 PFIGALD--GHRDGISCMAKNPNYLKGFFSGSMDGDIRLW---DIANRR----TVCQYSG 107
I LD H+ I +A P + +GS D + +W + A+R + G
Sbjct: 47 TLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105
Query: 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLW 136
H+ V+G+ S DG L +C D +V +W
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIW 134
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 212 NPAEPNVLATTASDRSITLY---DLRMSSPARKVIMRTKSNSISWNPME--PMNFTAANE 266
+P +LA+ + D + ++ + R S A + NS+ W P E PM A+++
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Query: 267 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-------------GREFVTGSYDRTI 313
+ + H V ++P R+FVTG D +
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 314 RIFQYN 319
+I++YN
Sbjct: 183 KIWKYN 188
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 62/319 (19%), Positives = 129/319 (40%), Gaps = 45/319 (14%)
Query: 85 GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLX 144
G+M ++L + + RT H ++ + G + + TD +++LW++ A
Sbjct: 1 GAMGSMVKLAEFS--RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA--- 55
Query: 145 XXXXXXXXXXEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQ-PINS--- 198
+P+A + F +D + A A +++++ N + INS
Sbjct: 56 -------DSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMAR 108
Query: 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS----------SPARKVIMRTKS 248
F + +V +V+FN + NVLA+ ++ I ++D+ +P + + +
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168
Query: 249 NSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHES-------AVMDIDYSPTG 301
S++WN F +A +D + E +H+ + S + +++ P
Sbjct: 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKE--VIHLSYTSPNSGIKQQLSVVEWHPKN 226
Query: 302 REFV---TGS-YDRTIRIFQY-NGGRSREIYHTKRMQRVFCVKFSC--DASYVISGSDDT 354
V TGS D +I I+ N + + + + + + C D ++S D
Sbjct: 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW-CHQDEHLLLSSGRDN 285
Query: 355 NLRLWKAKASEQLGVLHPR 373
+ LW +++EQL R
Sbjct: 286 TVLLWNPESAEQLSQFPAR 304
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138
FS S D +W N + GH G + + V + V+ D ++KLW+V
Sbjct: 47 LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY 105
+G LDGH I + + + K +GS D I+LWD++N + V +
Sbjct: 67 LGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATW 112
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 287 GHESAVMDIDYSPTGREFVTGSYDRTIRI-FQYNGGRSREIYHTKRMQRVFCVKFSCDAS 345
GHE + + Y+ G + S D + + + NG R + ++ + C
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL--DGHTGTIWSIDVDCFTK 87
Query: 346 YVISGSDDTNLRLW 359
Y ++GS D +++LW
Sbjct: 88 YCVTGSADYSIKLW 101
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 212 NPAEPNVLATTASDRSITLY---DLRMSSPARKVIMRTKSNSISWNPME--PMNFTAANE 266
+P +LA+ + D + ++ + R S A + NS+ W P E P+ A+++
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 267 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-------------GREFVTGSYDRTI 313
+ + H V ++P R+FVTG D +
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 314 RIFQYN 319
+I++YN
Sbjct: 183 KIWKYN 188
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/130 (18%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLR---MSSPARKVIMRTKSNS-----ISWN 254
T V+ + + P NV+A+ + D ++ ++++ + P R+ ++ + ++ ++W+
Sbjct: 81 TAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH 140
Query: 255 PMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG---HESAVMDIDYSPTGREFVTGSYDR 311
P +A D +D A + +G H + +D+S G T D+
Sbjct: 141 PTAQNVLLSAGXDNVILVWDVGT--GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 312 TIRIFQYNGG 321
+R+ + G
Sbjct: 199 RVRVIEPRKG 208
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 212 NPAEPNVLATTASDRSITLY---DLRMSSPARKVIMRTKSNSISWNPME--PMNFTAANE 266
+P +LA+ + D + ++ + R S A + NS+ W P E P+ A+++
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Query: 267 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-------------GREFVTGSYDRTI 313
+ + H V ++P R+FVTG D +
Sbjct: 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 184
Query: 314 RIFQYN 319
+I++YN
Sbjct: 185 KIWKYN 190
>pdb|3JTY|A Chain A, Crystal Structure Of A Benf-Like Porin From Pseudomonas
Fluorescens Pf-5
pdb|3JTY|B Chain B, Crystal Structure Of A Benf-Like Porin From Pseudomonas
Fluorescens Pf-5
pdb|3JTY|C Chain C, Crystal Structure Of A Benf-Like Porin From Pseudomonas
Fluorescens Pf-5
pdb|3JTY|D Chain D, Crystal Structure Of A Benf-Like Porin From Pseudomonas
Fluorescens Pf-5
Length = 402
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 44 ALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC 103
AL A+L+ I+++ FI + G + N GFF G DG R D+ NR
Sbjct: 198 ALWNAQLKDIYSQQFINLIHSQPLGDWTLGANL----GFFYGKEDGSARAGDMENRTWSG 253
Query: 104 QYSGHQGA 111
+S G
Sbjct: 254 LFSAKYGG 261
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 258 PMNFTAANEDCNCYSYDSR--KLDEAKCVHMGHESAVMDIDYSPTGREFV-TGSYDRTIR 314
PM +D + Y K + H S V D+++SP EFV T DR I
Sbjct: 173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232
Query: 315 IFQYNGGRSREIYHTKR---MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365
F G + + +F + + + G+D T +R+W S+
Sbjct: 233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSK 285
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI 96
I +L G R + C+ ++PN +G DG + +WD+
Sbjct: 229 ILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDV 266
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 212 NPAEPNVLATTASDRSITLY---DLRMSSPARKVIMRTKSNSISWNPME--PMNFTAANE 266
+P +LA+ + D + ++ + R S A + NS+ W P E P+ A+++
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 267 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT-------------GREFVTGSYDRTI 313
+ + H V ++P R+FVTG D +
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 314 RIFQYN 319
+I++YN
Sbjct: 183 KIWKYN 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,064,520
Number of Sequences: 62578
Number of extensions: 509159
Number of successful extensions: 1889
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 569
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)